AlfalfaGEDB | Msa0254560

M. sativa cultivar zhongmu-4 / Msa0254560

KEGG: -
GO: -
PFAM: PF05687.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0254560	XP_003596275.1	99.381	323	2	0	1	323	1	323	0.0	659

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0254560	sp\|Q9ZV88\|BEH4_ARATH	69.760	334	81	8	1	323	1	325	5.43e-131	379

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0254560	G7IR05	99.381	323	2	0	1	323	1	323	0.0	659

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TFs/TRs:

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Gene ID	Type	Classification
Msa0254560	TF	BES1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0254560	Msa0293860	0.927389	1.259048e-91	-8.615850e-47
Msa0254560	Msa0332300	0.917340	5.979945e-86	-8.615850e-47
Msa0254560	Msa0725480	0.827167	1.816509e-54	-8.615850e-47
Msa0254560	Msa0766100	0.842113	3.152292e-58	-8.615850e-47
Msa0254560	Msa0813320	0.807040	6.138169e-50	-8.615850e-47
Msa0254560	Msa1018020	0.801006	1.103751e-48	-8.615850e-47
Msa0254560	Msa1147980	0.813257	2.805639e-51	-8.615850e-47
Msa0254560	Msa1262310	-0.803585	3.249470e-49	-8.615850e-47
Msa0254560	Msa1332140	0.815230	1.028274e-51	-8.615850e-47
Msa0254560	Msa1359080	0.813207	2.876174e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0254560	MtrunA17_Chr2g0315211	99.381	323	2	0	1	323	1	323	0.0	659
Msa0254560	MtrunA17_Chr2g0315201	74.303	323	76	1	1	323	1	316	9.57e-150	423
Msa0254560	MtrunA17_Chr1g0154651	38.629	321	108	11	6	323	14	248	1.90e-42	147
Msa0254560	MtrunA17_Chr3g0141401	41.742	333	148	14	3	321	12	312	3.48e-36	132
Msa0254560	MtrunA17_Chr5g0403631	43.860	342	138	10	6	321	9	322	9.22e-33	123
Msa0254560	MtrunA17_Chr5g0408851	40.870	115	65	2	17	131	61	172	2.59e-16	79.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0254560	AT1G78700.1	69.760	334	81	8	1	323	1	325	5.52e-132	379
Msa0254560	AT4G18890.1	61.585	328	77	9	1	323	1	284	2.89e-103	304
Msa0254560	AT4G18890.2	52.988	251	69	9	78	323	2	208	1.50e-63	200
Msa0254560	AT1G75080.2	40.385	364	120	14	6	323	23	335	1.22e-46	160
Msa0254560	AT1G75080.1	40.385	364	120	14	6	323	23	335	1.22e-46	160
Msa0254560	AT1G19350.3	41.160	362	116	15	6	321	44	354	7.79e-45	157
Msa0254560	AT1G19350.5	40.884	362	117	15	6	321	22	332	8.72e-45	156
Msa0254560	AT1G19350.1	40.884	362	117	15	6	321	22	332	8.72e-45	156
Msa0254560	AT1G19350.6	40.884	362	117	15	6	321	22	332	8.72e-45	156
Msa0254560	AT1G19350.4	40.884	362	117	15	6	321	22	332	8.72e-45	156

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Find 168 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATCAATATACCTGTAA+TGG	0.435716	2_2:-48092277	Msa0254560:three_prime_UTR
AAAGCTCTTTGTAATGAAGC+TGG	0.501704	2_2:-48095933	Msa0254560:CDS
AAAGTTAGAGGATGGAGTTA+AGG	0.427651	2_2:-48092467	Msa0254560:three_prime_UTR
AAATGTACCTGCATGACCAA+AGG	0.606651	2_2:-48092229	Msa0254560:three_prime_UTR
AACATGTCCCACTTTGTCCA+GGG	0.573471	2_2:+48092905	None:intergenic
AAGCTCTTTGAAGATTTAAT+CGG	0.363881	2_2:+48096202	None:intergenic
AAGGAAGAAGAGCCAGGACT+TGG	0.403188	2_2:+48093357	None:intergenic
AAGGAAGTTCAATGCAAATT+CGG	0.422861	2_2:-48092210	Msa0254560:three_prime_UTR
AATAAAAGAATAAAATAAAA+TGG	0.287996	2_2:+48092420	None:intergenic
AATATATAGCTGGGGAAGCT+TGG	0.443626	2_2:+48093230	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTGGAAGAAATTGAGAAC+GGG	+	chr2_2:48092205-48092224	None:intergenic	30.0%
CAATGATTCTCCAAATCAAA+AGG	-	chr2_2:48092841-48092860	Msa0254560:CDS	30.0%
ATTATGTGTATCTAGGTGTT+TGG	-	chr2_2:48092999-48093018	Msa0254560:CDS	30.0%
AGGGTGAAAGGAAAAAAAAA+TGG	-	chr2_2:48093314-48093333	Msa0254560:CDS	30.0%
TACTCCAAGCAAAACTTATT+AGG	-	chr2_2:48093941-48093960	Msa0254560:intron	30.0%
GAACATTGAAGAGTTCTATT+TGG	+	chr2_2:48094105-48094124	None:intergenic	30.0%
ACTCTTCAATGTTCAACTAT+AGG	-	chr2_2:48094111-48094130	Msa0254560:intron	30.0%
AAAATCAATACATGCAGAGA+AGG	+	chr2_2:48094375-48094394	None:intergenic	30.0%
GCTATCAATGGTAGAATTTA+AGG	-	chr2_2:48094502-48094521	Msa0254560:intron	30.0%
GAATTCAATTCAGTGCTTTA+AGG	+	chr2_2:48094650-48094669	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	48092076	48096418	48092076	ID=Msa0254560;Name=Msa0254560
chr2_2	mRNA	48092076	48096418	48092076	ID=Msa0254560-mRNA-1;Parent=Msa0254560;Name=Msa0254560-mRNA-1;_AED=0.30;_eAED=0.30;_QI=307\|1\|1\|1\|1\|1\|3\|511\|323
chr2_2	exon	48092076	48092590	48092076	ID=Msa0254560-mRNA-1:exon:14542;Parent=Msa0254560-mRNA-1
chr2_2	exon	48092724	48093475	48092724	ID=Msa0254560-mRNA-1:exon:14541;Parent=Msa0254560-mRNA-1
chr2_2	exon	48095896	48096418	48095896	ID=Msa0254560-mRNA-1:exon:14540;Parent=Msa0254560-mRNA-1
chr2_2	five_prime_UTR	48096112	48096418	48096112	ID=Msa0254560-mRNA-1:five_prime_utr;Parent=Msa0254560-mRNA-1
chr2_2	CDS	48095896	48096111	48095896	ID=Msa0254560-mRNA-1:cds;Parent=Msa0254560-mRNA-1
chr2_2	CDS	48092724	48093475	48092724	ID=Msa0254560-mRNA-1:cds;Parent=Msa0254560-mRNA-1
chr2_2	CDS	48092587	48092590	48092587	ID=Msa0254560-mRNA-1:cds;Parent=Msa0254560-mRNA-1
chr2_2	three_prime_UTR	48092076	48092586	48092076	ID=Msa0254560-mRNA-1:three_prime_utr;Parent=Msa0254560-mRNA-1

Gene Sequence

>Msa0254560

ATGACGTCGGGGACGAGGCAACCAACGTGGAAGGAGAGAGAGAATAACAAGAGGAGAGAGAGAAGAAGAAGAGCTATAGCAGCGAAGATCTTCTCCGGTTTGAGAATGTATGGGAACTATAAGCTTCCGAAACATTGCGACAACAATGAAGTTCTCAAAGCTCTTTGTAATGAAGCTGGTTGGATCGTTGAGCCTGATGGTACAACGTATCGTAAGGGATGCAAGCCTGCGGAACGCATGGATGTGATAGGTGGTTCTGCAATGGGAAGCCCGTGTTCATCTTACCATGTCAGTCCCTGTGCTTCCTACAACCCAAGTCCTGGCTCTTCTTCCTTCCCTAGCCCGCGCTCATCCCATGCTGTAAATCCTAATGGTGATGGAAATTCCCTCATTCCATGGCTCAAAAACCTCTCATCTGGATCATCATCAGCATCCTCTTCCAAGCTTCCCCAGCTATATATTCACACTGGCTCCATCAGTGCTCCTGTCACTCCTCCACTTAGCTCTCCAACTGCTCGATCACCCCAGAGGAAAGCTGACTGGGAGGATCAGTCTACTCGTCCTGGGTGGGGTGGGCAGCAGTACTCTTTCCAGCCTTCCTCCACTCCTCCTAGCCCTGGTCGCCAAGTTCTTGACCCAGATTGGTTTGCTGGGATCAGGATGCCCCACAGCGGGCAAACTTCTCCTACCTTCAGCCTAGTCGCTACTAATCCATTTGGCTTCAGGGAAGAGGTTTTCTGTGGCAGTGATTCCCGCATGTGGACCCCTGGACAAAGTGGGACATGTTCTCCAGCTTTAGCTGCAGGCTCTGATCATAATGCTGACATACCAATGTCTGAAGCTATTTCAGATGAATTTGCCTTTGGAAGCAGTGCAGTTGGTTTGGTGAAGCCTTGGGAAGGAGAGAGGATCCATGAAGATTCTGGATCAGATGATTTAGAGCTCACTCTTGGTACCTCAAAGACCAGGTAA

Protein sequence

>Msa0254560

MTSGTRQPTWKERENNKRRERRRRAIAAKIFSGLRMYGNYKLPKHCDNNEVLKALCNEAGWIVEPDGTTYRKGCKPAERMDVIGGSAMGSPCSSYHVSPCASYNPSPGSSSFPSPRSSHAVNPNGDGNSLIPWLKNLSSGSSSASSSKLPQLYIHTGSISAPVTPPLSSPTARSPQRKADWEDQSTRPGWGGQQYSFQPSSTPPSPGRQVLDPDWFAGIRMPHSGQTSPTFSLVATNPFGFREEVFCGSDSRMWTPGQSGTCSPALAAGSDHNADIPMSEAISDEFAFGSSAVGLVKPWEGERIHEDSGSDDLELTLGTSKTR*