AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0254560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0254560 MtrunA17_Chr2g0315211 99.381 323 2 0 1 323 1 323 0.0 659
Msa0254560 MtrunA17_Chr2g0315201 74.303 323 76 1 1 323 1 316 9.57e-150 423
Msa0254560 MtrunA17_Chr1g0154651 38.629 321 108 11 6 323 14 248 1.90e-42 147
Msa0254560 MtrunA17_Chr3g0141401 41.742 333 148 14 3 321 12 312 3.48e-36 132
Msa0254560 MtrunA17_Chr5g0403631 43.860 342 138 10 6 321 9 322 9.22e-33 123
Msa0254560 MtrunA17_Chr5g0408851 40.870 115 65 2 17 131 61 172 2.59e-16 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0254560 AT1G78700.1 69.760 334 81 8 1 323 1 325 5.52e-132 379
Msa0254560 AT4G18890.1 61.585 328 77 9 1 323 1 284 2.89e-103 304
Msa0254560 AT4G18890.2 52.988 251 69 9 78 323 2 208 1.50e-63 200
Msa0254560 AT1G75080.2 40.385 364 120 14 6 323 23 335 1.22e-46 160
Msa0254560 AT1G75080.1 40.385 364 120 14 6 323 23 335 1.22e-46 160
Msa0254560 AT1G19350.3 41.160 362 116 15 6 321 44 354 7.79e-45 157
Msa0254560 AT1G19350.5 40.884 362 117 15 6 321 22 332 8.72e-45 156
Msa0254560 AT1G19350.1 40.884 362 117 15 6 321 22 332 8.72e-45 156
Msa0254560 AT1G19350.6 40.884 362 117 15 6 321 22 332 8.72e-45 156
Msa0254560 AT1G19350.4 40.884 362 117 15 6 321 22 332 8.72e-45 156
Msa0254560 AT3G50750.1 42.331 326 105 10 6 318 14 269 2.43e-41 145
Msa0254560 AT4G36780.1 50.685 219 76 7 6 211 16 215 3.41e-33 124
Msa0254560 AT5G45300.2 48.235 85 41 1 17 101 97 178 4.59e-16 79.3
Msa0254560 AT5G45300.3 47.059 85 44 1 17 101 111 194 1.20e-15 78.2
Msa0254560 AT5G45300.1 47.059 85 44 1 17 101 97 180 1.22e-15 78.2
Msa0254560 AT2G45880.1 53.623 69 29 1 11 76 74 142 6.04e-15 75.9

Find 168 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATTCGGATTGAATTAT+AGG 0.190929 2_2:-48092197 Msa0254560:three_prime_UTR
CTTGACCCAGATTGGTTTGC+TGG 0.249683 2_2:-48093039 Msa0254560:CDS
CTACTAATCCATTTGGCTTC+AGG 0.251618 2_2:-48092966 Msa0254560:CDS
GCGTTTGAAGGAGTTGAATT+TGG 0.275826 2_2:+48096253 None:intergenic
AATAAAAGAATAAAATAAAA+TGG 0.287996 2_2:+48092420 None:intergenic
CCTCCCAGTCAGCTTTCCTC+TGG 0.324519 2_2:+48093145 None:intergenic
GAGAGGATCCATGAAGATTC+TGG 0.328306 2_2:-48092766 Msa0254560:CDS
CACTACTTACCTGGTCTTTG+AGG 0.341054 2_2:+48092714 None:intergenic
CTGATCCCAGCAAACCAATC+TGG 0.350204 2_2:+48093033 None:intergenic
AGAAAATTGGAAAAGATATA+TGG 0.355572 2_2:+48092170 None:intergenic
AAGCTCTTTGAAGATTTAAT+CGG 0.363881 2_2:+48096202 None:intergenic
AGGGAATTTCCATCACCATT+AGG 0.370323 2_2:+48093303 None:intergenic
CATCTGATCCAGAATCTTCA+TGG 0.372743 2_2:+48092758 None:intergenic
GCATGGGATGAGCGCGGGCT+AGG 0.380817 2_2:+48093333 None:intergenic
GTTAAACCCTCAGATACTAT+TGG 0.381335 2_2:-48092300 Msa0254560:three_prime_UTR
TTCTCCGGTTTGAGAATGTA+TGG 0.382953 2_2:-48095999 Msa0254560:CDS
CAGATTGGTTTGCTGGGATC+AGG 0.383352 2_2:-48093032 Msa0254560:CDS
TACTAATCCATTTGGCTTCA+GGG 0.383377 2_2:-48092965 Msa0254560:CDS
CTCCCAGTCAGCTTTCCTCT+GGG 0.391858 2_2:+48093146 None:intergenic
AATTTGCATTGAACTTCCTT+TGG 0.398308 2_2:+48092213 None:intergenic
AAGGAAGAAGAGCCAGGACT+TGG 0.403188 2_2:+48093357 None:intergenic
ATATTATGTAGAAAAGTTAG+AGG 0.408051 2_2:-48092479 Msa0254560:three_prime_UTR
TTATGTATACAACTTTAGTT+AGG 0.409089 2_2:-48092363 Msa0254560:three_prime_UTR
GAGGATCAGTCTACTCGTCC+TGG 0.410691 2_2:-48093126 Msa0254560:CDS
CTAGTCGCTACTAATCCATT+TGG 0.412992 2_2:-48092973 Msa0254560:CDS
AGAGCCAGGACTTGGGTTGT+AGG 0.415820 2_2:+48093365 None:intergenic
ATTTCAGATGAATTTGCCTT+TGG 0.420372 2_2:-48092826 Msa0254560:CDS
TCTACTCGTCCTGGGTGGGG+TGG 0.421075 2_2:-48093117 Msa0254560:CDS
AAGGAAGTTCAATGCAAATT+CGG 0.422861 2_2:-48092210 Msa0254560:three_prime_UTR
CTACTCGTCCTGGGTGGGGT+GGG 0.424088 2_2:-48093116 Msa0254560:CDS
TGGAAGCAGTGCAGTTGGTT+TGG 0.426703 2_2:-48092806 Msa0254560:CDS
AAAGTTAGAGGATGGAGTTA+AGG 0.427651 2_2:-48092467 Msa0254560:three_prime_UTR
TACAAAACGACTGCGTTTGA+AGG 0.431915 2_2:+48096241 None:intergenic
GAGCTAAGTGGAGGAGTGAC+AGG 0.433832 2_2:+48093186 None:intergenic
TCAATATACCTGTAATGGAT+TGG 0.434527 2_2:-48092272 Msa0254560:three_prime_UTR
AAAGATCAATATACCTGTAA+TGG 0.435716 2_2:-48092277 Msa0254560:three_prime_UTR
ATACCAACCCAATCCATTAC+AGG 0.437562 2_2:+48092264 None:intergenic
TCATTGTTGTCGCAATGTTT+CGG 0.441488 2_2:+48095963 None:intergenic
AATATATAGCTGGGGAAGCT+TGG 0.443626 2_2:+48093230 None:intergenic
ATTTGGAAGAAATTGAGAAC+GGG 0.448456 2_2:+48096270 None:intergenic
TTGACCCAGATTGGTTTGCT+GGG 0.448546 2_2:-48093038 Msa0254560:CDS
ACCAATCTGGGTCAAGAACT+TGG 0.450542 2_2:+48093046 None:intergenic
CAATATACCTGTAATGGATT+GGG 0.451636 2_2:-48092271 Msa0254560:three_prime_UTR
ACCTCTTCCCTGAAGCCAAA+TGG 0.452419 2_2:+48092958 None:intergenic
AGACTCAAATTTCATATTGA+GGG 0.452575 2_2:+48092505 None:intergenic
TCCCATGCTGTAAATCCTAA+TGG 0.453038 2_2:-48093318 Msa0254560:CDS
GCCAAGTTCTTGACCCAGAT+TGG 0.457814 2_2:-48093047 Msa0254560:CDS
TAGGAGGAGTGGAGGAAGGC+TGG 0.458194 2_2:+48093079 None:intergenic
TGTTCTCCAGCTTTAGCTGC+AGG 0.458482 2_2:-48092886 Msa0254560:CDS
TCCTCCACTCCTCCTAGCCC+TGG 0.459964 2_2:-48093072 Msa0254560:CDS
TGAACTTCCTTTGGTCATGC+AGG 0.467251 2_2:+48092222 None:intergenic
GAACATGTCCCACTTTGTCC+AGG 0.469503 2_2:+48092904 None:intergenic
GGGTCAAGAACTTGGCGACC+AGG 0.476781 2_2:+48093054 None:intergenic
CAGACTCAAATTTCATATTG+AGG 0.479861 2_2:+48092504 None:intergenic
AGCCAGTGTGAATATATAGC+TGG 0.480859 2_2:+48093220 None:intergenic
TCCATTTGGCTTCAGGGAAG+AGG 0.483652 2_2:-48092959 Msa0254560:CDS
CTCTGGGGTGATCGAGCAGT+TGG 0.483752 2_2:+48093162 None:intergenic
TATGTAGAAAAGTTAGAGGA+TGG 0.484664 2_2:-48092475 Msa0254560:three_prime_UTR
AGAACTTGGCGACCAGGGCT+AGG 0.484854 2_2:+48093060 None:intergenic
AGTTGGTTTGGTGAAGCCTT+GGG 0.485013 2_2:-48092794 Msa0254560:CDS
GGATCAGGATGCCCCACAGC+GGG 0.486389 2_2:-48093017 Msa0254560:CDS
GCCTTTGGAAGCAGTGCAGT+TGG 0.487429 2_2:-48092811 Msa0254560:CDS
CACCCCAGAGGAAAGCTGAC+TGG 0.487819 2_2:-48093149 Msa0254560:CDS
GCGGAACGCATGGATGTGAT+AGG 0.488603 2_2:-48093441 Msa0254560:CDS
AGGAGAAGTTTGCCCGCTGT+GGG 0.488942 2_2:+48093005 None:intergenic
CATGGGATGAGCGCGGGCTA+GGG 0.493897 2_2:+48093334 None:intergenic
ACTTCGCCGGAGTTAGTTAA+CGG 0.497778 2_2:+48096333 None:intergenic
TCAGAGCCTGCAGCTAAAGC+TGG 0.499118 2_2:+48092880 None:intergenic
GATTCCCGCATGTGGACCCC+TGG 0.499359 2_2:-48092922 Msa0254560:CDS
ATGCAAGCCTGCGGAACGCA+TGG 0.500040 2_2:-48093451 Msa0254560:CDS
AAAGCTCTTTGTAATGAAGC+TGG 0.501704 2_2:-48095933 Msa0254560:CDS
CTCTTTGTAATGAAGCTGGT+TGG 0.502741 2_2:-48095929 Msa0254560:CDS
ACTTGGGTTGTAGGAAGCAC+AGG 0.505215 2_2:+48093374 None:intergenic
GCTTCCTACAACCCAAGTCC+TGG 0.505291 2_2:-48093369 Msa0254560:CDS
GATGATTTAGAGCTCACTCT+TGG 0.505956 2_2:-48092739 Msa0254560:CDS
TGGATCCTCTCTCCTTCCCA+AGG 0.506658 2_2:+48092778 None:intergenic
CAGTTGGTTTGGTGAAGCCT+TGG 0.507522 2_2:-48092795 Msa0254560:CDS
TCAGTCTACTCGTCCTGGGT+GGG 0.507843 2_2:-48093121 Msa0254560:CDS
GCGACCAGGGCTAGGAGGAG+TGG 0.508618 2_2:+48093068 None:intergenic
TTACGATACGTTGTACCATC+AGG 0.508951 2_2:+48095897 None:intergenic
GGATGAGCGCGGGCTAGGGA+AGG 0.515742 2_2:+48093338 None:intergenic
GTTCCCATACATTCTCAAAC+CGG 0.515743 2_2:+48095995 None:intergenic
ACCCCAGAGGAAAGCTGACT+GGG 0.516090 2_2:-48093148 Msa0254560:CDS
GATCTTTCCAATAGTATCTG+AGG 0.516108 2_2:+48092293 None:intergenic
GCGAGATGACGTCGGGGACG+AGG 0.516345 2_2:-48096094 Msa0254560:exon
CAGTCTACTCGTCCTGGGTG+GGG 0.517746 2_2:-48093120 Msa0254560:CDS
CTAGGGAAGGAAGAAGAGCC+AGG 0.519399 2_2:+48093351 None:intergenic
ATCACATCCATGCGTTCCGC+AGG 0.519528 2_2:+48093444 None:intergenic
AGGAGTGACAGGAGCACTGA+TGG 0.525130 2_2:+48093197 None:intergenic
TGATCCCAGCAAACCAATCT+GGG 0.525877 2_2:+48093034 None:intergenic
CACCATTAGGATTTACAGCA+TGG 0.525920 2_2:+48093316 None:intergenic
GTGATAGGTGGTTCTGCAAT+GGG 0.525969 2_2:-48093426 Msa0254560:CDS
TCTGAAATAGCTTCAGACAT+TGG 0.527497 2_2:+48092841 None:intergenic
GCCAGTGTGAATATATAGCT+GGG 0.527684 2_2:+48093221 None:intergenic
ACATGATTGACCAAAATGAA+AGG 0.530698 2_2:+48092321 None:intergenic
TATACAACTTTAGTTAGGTG+TGG 0.535701 2_2:-48092358 Msa0254560:three_prime_UTR
TTGTCCAGGGGTCCACATGC+GGG 0.536824 2_2:+48092918 None:intergenic
CATGATTGACCAAAATGAAA+GGG 0.537335 2_2:+48092322 None:intergenic
ATCTTTCCAATAGTATCTGA+GGG 0.539699 2_2:+48092294 None:intergenic
ATACAACTTTAGTTAGGTGT+GGG 0.543542 2_2:-48092357 Msa0254560:three_prime_UTR
TAGGAGAAGTTTGCCCGCTG+TGG 0.548726 2_2:+48093004 None:intergenic
GGGCTAGGAGGAGTGGAGGA+AGG 0.549534 2_2:+48093075 None:intergenic
AGGATCAGTCTACTCGTCCT+GGG 0.551485 2_2:-48093125 Msa0254560:CDS
ATAGCAGCGAAGATCTTCTC+CGG 0.553180 2_2:-48096014 Msa0254560:CDS
AATTTGGAAGAAATTGAGAA+CGG 0.555130 2_2:+48096269 None:intergenic
ATGGAAATTCCCTCATTCCA+TGG 0.555829 2_2:-48093293 Msa0254560:CDS
CGTCCCCGACGTCATCTCGC+CGG 0.557464 2_2:+48096097 None:intergenic
TTCTCTCTCTCCTTCCACGT+TGG 0.560859 2_2:+48096068 None:intergenic
GCTGTAAATCCTAATGGTGA+TGG 0.562331 2_2:-48093312 Msa0254560:CDS
TAGCTGGGGAAGCTTGGAAG+AGG 0.564442 2_2:+48093236 None:intergenic
ACCAGGGCTAGGAGGAGTGG+AGG 0.565432 2_2:+48093071 None:intergenic
AGTTAACGGTGAATGTTGAC+CGG 0.566671 2_2:+48096347 None:intergenic
GACGAGGCAACCAACGTGGA+AGG 0.571428 2_2:-48096078 Msa0254560:CDS
ATCAGTCTACTCGTCCTGGG+TGG 0.572626 2_2:-48093122 Msa0254560:CDS
TTTGTCCAGGGGTCCACATG+CGG 0.572765 2_2:+48092917 None:intergenic
AACATGTCCCACTTTGTCCA+GGG 0.573471 2_2:+48092905 None:intergenic
CGAGCAGTTGGAGAGCTAAG+TGG 0.574747 2_2:+48093174 None:intergenic
ACCATTAGGATTTACAGCAT+GGG 0.576979 2_2:+48093317 None:intergenic
ACGTGAGGTGGTTACTTCGC+CGG 0.577792 2_2:+48096320 None:intergenic
TCTCCGGTTTGAGAATGTAT+GGG 0.580133 2_2:-48095998 Msa0254560:CDS
AGGAAGAAGAGCCAGGACTT+GGG 0.580376 2_2:+48093358 None:intergenic
CAAATGGATTAGTAGCGACT+AGG 0.580823 2_2:+48092974 None:intergenic
ACCAACTGCACTGCTTCCAA+AGG 0.582208 2_2:+48092810 None:intergenic
TCCCAGTCAGCTTTCCTCTG+GGG 0.589485 2_2:+48093147 None:intergenic
TTACAGCATGGGATGAGCGC+GGG 0.592384 2_2:+48093328 None:intergenic
TGTGATAGGTGGTTCTGCAA+TGG 0.592423 2_2:-48093427 Msa0254560:CDS
GGTTGGATCGTTGAGCCTGA+TGG 0.594077 2_2:-48095912 Msa0254560:CDS
ATGTGGACCCCTGGACAAAG+TGG 0.596230 2_2:-48092913 Msa0254560:CDS
GGTCAAGAACTTGGCGACCA+GGG 0.596349 2_2:+48093055 None:intergenic
GGTTTGGTGAAGCCTTGGGA+AGG 0.598437 2_2:-48092790 Msa0254560:CDS
TGATGGTACAACGTATCGTA+AGG 0.599548 2_2:-48095895 Msa0254560:intron
GGAGAAGTTTGCCCGCTGTG+GGG 0.600569 2_2:+48093006 None:intergenic
CATTCACCGTTAACTAACTC+CGG 0.600897 2_2:-48096339 Msa0254560:five_prime_UTR
AGGAGAGAGAGAATAACAAG+AGG 0.603214 2_2:-48096058 Msa0254560:CDS
TGAAGCCTTGGGAAGGAGAG+AGG 0.605206 2_2:-48092783 Msa0254560:CDS
AAATGTACCTGCATGACCAA+AGG 0.606651 2_2:-48092229 Msa0254560:three_prime_UTR
CTCTTGGTACCTCAAAGACC+AGG 0.612700 2_2:-48092723 Msa0254560:intron
GTGGCAGTGATTCCCGCATG+TGG 0.613531 2_2:-48092930 Msa0254560:CDS
GACTCAAATTTCATATTGAG+GGG 0.622482 2_2:+48092506 None:intergenic
GTAGCGACTAGGCTGAAGGT+AGG 0.624575 2_2:+48092985 None:intergenic
TACTGCTGCCCACCCCACCC+AGG 0.630033 2_2:+48093108 None:intergenic
ATTAGTAGCGACTAGGCTGA+AGG 0.637373 2_2:+48092981 None:intergenic
ACTTGGCGACCAGGGCTAGG+AGG 0.641842 2_2:+48093063 None:intergenic
AATTGGAAAAGATATATGGT+AGG 0.642271 2_2:+48092174 None:intergenic
TGTGGACCCCTGGACAAAGT+GGG 0.642302 2_2:-48092912 Msa0254560:CDS
CTGACATGGTAAGATGAACA+CGG 0.642363 2_2:+48093399 None:intergenic
TACAACTTTAGTTAGGTGTG+GGG 0.643760 2_2:-48092356 Msa0254560:three_prime_UTR
ATACCTGTAATGGATTGGGT+TGG 0.647510 2_2:-48092267 Msa0254560:three_prime_UTR
CCCCAGCTATATATTCACAC+TGG 0.648796 2_2:-48093222 Msa0254560:CDS
ATGTTGACCGGAAAACTCGT+CGG 0.650604 2_2:+48096359 None:intergenic
TTTCAAGGGATGCAAGCCTG+CGG 0.653639 2_2:-48093460 Msa0254560:intron
GCAGTTGGAGAGCTAAGTGG+AGG 0.657333 2_2:+48093177 None:intergenic
TTTACAGCATGGGATGAGCG+CGG 0.658189 2_2:+48093327 None:intergenic
CTGCATAAATGAATAGTCAG+TGG 0.662411 2_2:-48092530 Msa0254560:three_prime_UTR
AGGAAGCACAGGGACTGACA+TGG 0.663416 2_2:+48093385 None:intergenic
CGGGGACGAGGCAACCAACG+TGG 0.666818 2_2:-48096082 Msa0254560:CDS
CTTGGGTTGTAGGAAGCACA+GGG 0.669094 2_2:+48093375 None:intergenic
CCAGAGGAAAGCTGACTGGG+AGG 0.670133 2_2:-48093145 Msa0254560:CDS
ACATGTCCCACTTTGTCCAG+GGG 0.671696 2_2:+48092906 None:intergenic
TGACATGGTAAGATGAACAC+GGG 0.677171 2_2:+48093400 None:intergenic
TGATTGGATCTAAGAACGTG+AGG 0.680052 2_2:+48096305 None:intergenic
TTGGATCTAAGAACGTGAGG+TGG 0.690870 2_2:+48096308 None:intergenic
CCAGTGTGAATATATAGCTG+GGG 0.692170 2_2:+48093222 None:intergenic
CTGATGATGATCCAGATGAG+AGG 0.693997 2_2:+48093262 None:intergenic
GAACGCATGGATGTGATAGG+TGG 0.705174 2_2:-48093438 Msa0254560:CDS
GGGATCAGGATGCCCCACAG+CGG 0.711509 2_2:-48093018 Msa0254560:CDS
CAACTGCTCGATCACCCCAG+AGG 0.741309 2_2:-48093161 Msa0254560:CDS
TTTCCGGCGAGATGACGTCG+GGG 0.771606 2_2:-48096100 Msa0254560:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTAATTTTAGCATTAATT+TGG - chr2_2:48092665-48092684 Msa0254560:intron 15.0%
!! CATAATAATTTCAACAAAAA+TGG + chr2_2:48092985-48093004 None:intergenic 15.0%
!!! TATGATTTTGTTGTTATTTT+TGG - chr2_2:48093081-48093100 Msa0254560:CDS 15.0%
!!! GAAAAAAAAATGGTATTTTT+AGG - chr2_2:48093324-48093343 Msa0254560:CDS 15.0%
!! AAAAATTCACAAATTCAAAA+GGG + chr2_2:48093396-48093415 None:intergenic 15.0%
!! TAAAAATTCACAAATTCAAA+AGG + chr2_2:48093397-48093416 None:intergenic 15.0%
!!! TTTGAATTTGTGAATTTTTA+AGG - chr2_2:48093397-48093416 Msa0254560:CDS 15.0%
!!! TTGAATTTGTGAATTTTTAA+GGG - chr2_2:48093398-48093417 Msa0254560:CDS 15.0%
!! TAAAAAAAGAAGAAATATCA+CGG + chr2_2:48093548-48093567 None:intergenic 15.0%
!!! GTCAATATTTTTTTTTTTGA+AGG + chr2_2:48094029-48094048 None:intergenic 15.0%
!! TAATGAAAATGTTTATTTCA+AGG - chr2_2:48094997-48095016 Msa0254560:intron 15.0%
!! AATGAAAATGTTTATTTCAA+GGG - chr2_2:48094998-48095017 Msa0254560:intron 15.0%
!!! TTATTCTTTTATTTTCTCTA+AGG - chr2_2:48096062-48096081 Msa0254560:CDS 15.0%
!! AAATGATGAATAACAGAATA+AGG - chr2_2:48092724-48092743 Msa0254560:CDS 20.0%
!! AAAAAAAATTGTTATGCATG+TGG - chr2_2:48092763-48092782 Msa0254560:CDS 20.0%
!! AAAAAAATTGTTATGCATGT+GGG - chr2_2:48092764-48092783 Msa0254560:CDS 20.0%
!! TGAAATTATTATGTGTATCT+AGG - chr2_2:48092992-48093011 Msa0254560:CDS 20.0%
!!! TTGTTGTTATTTTTGGTTTA+TGG - chr2_2:48093088-48093107 Msa0254560:CDS 20.0%
!!! GTTAGATTCTTTCTTTTTTT+AGG - chr2_2:48093132-48093151 Msa0254560:CDS 20.0%
!!! AAAAATGGTATTTTTAGGTT+TGG - chr2_2:48093329-48093348 Msa0254560:CDS 20.0%
!! AAAAAAAGAAGAAATATCAC+GGG + chr2_2:48093547-48093566 None:intergenic 20.0%
!!! GTGATATTTCTTCTTTTTTT+AGG - chr2_2:48093547-48093566 Msa0254560:intron 20.0%
!!! ATATTTCTTCTTTTTTTAGG+AGG - chr2_2:48093550-48093569 Msa0254560:intron 20.0%
!! AATAAATGCAAAAACGAAAA+TGG + chr2_2:48093769-48093788 None:intergenic 20.0%
!!! GTTTTTGCATTTATTGTTTT+TGG - chr2_2:48093774-48093793 Msa0254560:intron 20.0%
!! AAAAGATGAATAGAAAAATG+TGG - chr2_2:48093798-48093817 Msa0254560:intron 20.0%
!! TGAACAAAAATTAACCAAAA+TGG - chr2_2:48093891-48093910 Msa0254560:intron 20.0%
!!! ATATGATATGTCAATTTTGT+AGG + chr2_2:48094006-48094025 None:intergenic 20.0%
!! AATATACTAAAAGCTATCAA+TGG - chr2_2:48094490-48094509 Msa0254560:intron 20.0%
!!! AGATTTAATTCCTTTTTAAG+CGG + chr2_2:48094717-48094736 None:intergenic 20.0%
!!! ATATTAGATGCTTTATTGAA+GGG - chr2_2:48094859-48094878 Msa0254560:intron 20.0%
!!! TATATCATTTTAGCAACTAA+TGG + chr2_2:48094916-48094935 None:intergenic 20.0%
!! ATATTATGTAGAAAAGTTAG+AGG - chr2_2:48095993-48096012 Msa0254560:CDS 20.0%
!! TTATGTATACAACTTTAGTT+AGG - chr2_2:48096109-48096128 Msa0254560:exon 20.0%
!! AGAAAATTGGAAAAGATATA+TGG + chr2_2:48096305-48096324 None:intergenic 20.0%
!! AAAAACAAGTGATAGAAAAT+TGG + chr2_2:48096318-48096337 None:intergenic 20.0%
!!! TGTTTTTCTGATTTTATTTC+AGG - chr2_2:48096331-48096350 Msa0254560:five_prime_UTR 20.0%
!!! GTTTTTCTGATTTTATTTCA+GGG - chr2_2:48096332-48096351 Msa0254560:five_prime_UTR 20.0%
!! TTTCAGAAATCTAAGAAAAA+TGG + chr2_2:48096370-48096389 None:intergenic 20.0%
! AATTTGGAAGAAATTGAGAA+CGG + chr2_2:48092206-48092225 None:intergenic 25.0%
!! AAGCTCTTTGAAGATTTAAT+CGG + chr2_2:48092273-48092292 None:intergenic 25.0%
!! CTGATAATTTTTCTGTTCAT+CGG - chr2_2:48092305-48092324 Msa0254560:three_prime_UTR 25.0%
!!! GTTTTTGTTTTTTTCTTCAC+CGG - chr2_2:48092337-48092356 Msa0254560:three_prime_UTR 25.0%
! AAAAAATTGTTATGCATGTG+GGG - chr2_2:48092765-48092784 Msa0254560:CDS 25.0%
! GTAATGTGATTACAAGAATT+AGG - chr2_2:48093110-48093129 Msa0254560:CDS 25.0%
!!! TGAATTTTTAAGGGTAGTTT+TGG - chr2_2:48093407-48093426 Msa0254560:CDS 25.0%
! TAGATCGTCATCAATAATAA+AGG + chr2_2:48093642-48093661 None:intergenic 25.0%
! ACGAAAATGGAAAAAGTAAA+AGG + chr2_2:48093756-48093775 None:intergenic 25.0%
! ACAGTATATAAAACATCAAC+TGG + chr2_2:48093967-48093986 None:intergenic 25.0%
!! TCTATTTGGGATATTTAATC+TGG + chr2_2:48094091-48094110 None:intergenic 25.0%
! AACATTGAAGAGTTCTATTT+GGG + chr2_2:48094104-48094123 None:intergenic 25.0%
! TTACTAGTGTTCTTCAATAA+TGG - chr2_2:48094134-48094153 Msa0254560:intron 25.0%
! AGAATTATTTAACAGAACGT+AGG + chr2_2:48094453-48094472 None:intergenic 25.0%
! CTATCAATGGTAGAATTTAA+GGG - chr2_2:48094503-48094522 Msa0254560:intron 25.0%
!!! AATCAAAATCATTTTTGCAG+TGG + chr2_2:48094543-48094562 None:intergenic 25.0%
! GAAAAAAGAGATGAATAGTT+TGG + chr2_2:48094595-48094614 None:intergenic 25.0%
!!! GATTTAATTCCTTTTTAAGC+GGG + chr2_2:48094716-48094735 None:intergenic 25.0%
! GAAAAAGAACTTCCTATTAT+TGG + chr2_2:48094802-48094821 None:intergenic 25.0%
!! AAAATATAACTTGCATGCAA+TGG + chr2_2:48094833-48094852 None:intergenic 25.0%
!! CATATTAGATGCTTTATTGA+AGG - chr2_2:48094858-48094877 Msa0254560:intron 25.0%
!!! ATTTATGCAGCACTTTTTTT+TGG + chr2_2:48095932-48095951 None:intergenic 25.0%
! AGACTCAAATTTCATATTGA+GGG + chr2_2:48095970-48095989 None:intergenic 25.0%
! AAAGATCAATATACCTGTAA+TGG - chr2_2:48096195-48096214 Msa0254560:five_prime_UTR 25.0%
! AATTGGAAAAGATATATGGT+AGG + chr2_2:48096301-48096320 None:intergenic 25.0%
ATTTGGAAGAAATTGAGAAC+GGG + chr2_2:48092205-48092224 None:intergenic 30.0%
CAATGATTCTCCAAATCAAA+AGG - chr2_2:48092841-48092860 Msa0254560:CDS 30.0%
ATTATGTGTATCTAGGTGTT+TGG - chr2_2:48092999-48093018 Msa0254560:CDS 30.0%
!! ATCCGTGAGAAATATTTTGA+GGG - chr2_2:48093279-48093298 Msa0254560:CDS 30.0%
AGGGTGAAAGGAAAAAAAAA+TGG - chr2_2:48093314-48093333 Msa0254560:CDS 30.0%
!!! TTTTTAGGTTTGGACTTTTG+AGG - chr2_2:48093339-48093358 Msa0254560:CDS 30.0%
!!! TTTTAGGTTTGGACTTTTGA+GGG - chr2_2:48093340-48093359 Msa0254560:CDS 30.0%
!!! AACTGTATTGATTGCCATTT+TGG + chr2_2:48093908-48093927 None:intergenic 30.0%
TACTCCAAGCAAAACTTATT+AGG - chr2_2:48093941-48093960 Msa0254560:intron 30.0%
GAACATTGAAGAGTTCTATT+TGG + chr2_2:48094105-48094124 None:intergenic 30.0%
ACTCTTCAATGTTCAACTAT+AGG - chr2_2:48094111-48094130 Msa0254560:intron 30.0%
! AGTGTTCTTCAATAATGGAA+TGG - chr2_2:48094139-48094158 Msa0254560:intron 30.0%
!! GTTTCTAGTAACTGATTCAA+TGG - chr2_2:48094312-48094331 Msa0254560:intron 30.0%
AAAATCAATACATGCAGAGA+AGG + chr2_2:48094375-48094394 None:intergenic 30.0%
GCTATCAATGGTAGAATTTA+AGG - chr2_2:48094502-48094521 Msa0254560:intron 30.0%
GAATTCAATTCAGTGCTTTA+AGG + chr2_2:48094650-48094669 None:intergenic 30.0%
AATTGAATTCACTGTTAACC+TGG - chr2_2:48094660-48094679 Msa0254560:intron 30.0%
TTGCTACAATGTCCAATAAT+AGG - chr2_2:48094787-48094806 Msa0254560:intron 30.0%
! GCATGCAAGTTATATTTTGT+TGG - chr2_2:48094835-48094854 Msa0254560:intron 30.0%
ATTTCAGATGAATTTGCCTT+TGG - chr2_2:48095646-48095665 Msa0254560:intron 30.0%
AGTGACAACATTTGAAAAAC+TGG - chr2_2:48095777-48095796 Msa0254560:intron 30.0%
GTGACAACATTTGAAAAACT+GGG - chr2_2:48095778-48095797 Msa0254560:intron 30.0%
ACCTGAATTTATATTGTTGC+AGG - chr2_2:48095882-48095901 Msa0254560:intron 30.0%
ACCTGCAACAATATAAATTC+AGG + chr2_2:48095886-48095905 None:intergenic 30.0%
GACTCAAATTTCATATTGAG+GGG + chr2_2:48095969-48095988 None:intergenic 30.0%
CAGACTCAAATTTCATATTG+AGG + chr2_2:48095971-48095990 None:intergenic 30.0%
TATGTAGAAAAGTTAGAGGA+TGG - chr2_2:48095997-48096016 Msa0254560:CDS 30.0%
TATACAACTTTAGTTAGGTG+TGG - chr2_2:48096114-48096133 Msa0254560:five_prime_UTR 30.0%
ATACAACTTTAGTTAGGTGT+GGG - chr2_2:48096115-48096134 Msa0254560:five_prime_UTR 30.0%
!! ATTTTTCGACCCTTTCATTT+TGG - chr2_2:48096141-48096160 Msa0254560:five_prime_UTR 30.0%
CATGATTGACCAAAATGAAA+GGG + chr2_2:48096153-48096172 None:intergenic 30.0%
ACATGATTGACCAAAATGAA+AGG + chr2_2:48096154-48096173 None:intergenic 30.0%
ATCTTTCCAATAGTATCTGA+GGG + chr2_2:48096181-48096200 None:intergenic 30.0%
!! TCAATATACCTGTAATGGAT+TGG - chr2_2:48096200-48096219 Msa0254560:five_prime_UTR 30.0%
!! CAATATACCTGTAATGGATT+GGG - chr2_2:48096201-48096220 Msa0254560:five_prime_UTR 30.0%
AATTTGCATTGAACTTCCTT+TGG + chr2_2:48096262-48096281 None:intergenic 30.0%
AAGGAAGTTCAATGCAAATT+CGG - chr2_2:48096262-48096281 Msa0254560:five_prime_UTR 30.0%
GCAAATTCGGATTGAATTAT+AGG - chr2_2:48096275-48096294 Msa0254560:five_prime_UTR 30.0%
!! TTTTTGAAGAAACGCGTTGA+AGG + chr2_2:48092079-48092098 None:intergenic 35.0%
!!! TTTGTTTTTTTCTTCACCGG+CGG - chr2_2:48092340-48092359 Msa0254560:three_prime_UTR 35.0%
TCATTGTTGTCGCAATGTTT+CGG + chr2_2:48092512-48092531 None:intergenic 35.0%
AAAGCTCTTTGTAATGAAGC+TGG - chr2_2:48092539-48092558 Msa0254560:three_prime_UTR 35.0%
GATTCTCCAAATCAAAAGGA+CGG - chr2_2:48092845-48092864 Msa0254560:CDS 35.0%
!! CTTTTTCCGTCCTTTTGATT+TGG + chr2_2:48092854-48092873 None:intergenic 35.0%
! ACAATTTCGATCAGAAGTGT+AGG + chr2_2:48092896-48092915 None:intergenic 35.0%
!!! GCTGCGTTTAATGTTACTTT+TGG - chr2_2:48093056-48093075 Msa0254560:CDS 35.0%
!!! TTTCTTTTTTTAGGACTCGC+CGG - chr2_2:48093141-48093160 Msa0254560:CDS 35.0%
AGCACTAAAGATTCTCTCTA+TGG - chr2_2:48093225-48093244 Msa0254560:CDS 35.0%
! GATCCGTGAGAAATATTTTG+AGG - chr2_2:48093278-48093297 Msa0254560:CDS 35.0%
!! TCCGTGAGAAATATTTTGAG+GGG - chr2_2:48093280-48093299 Msa0254560:CDS 35.0%
!! ACTTTTGAGGGCAATGAAAT+GGG - chr2_2:48093352-48093371 Msa0254560:CDS 35.0%
!!! AAGGGTAGTTTTGGTAGTTT+AGG - chr2_2:48093416-48093435 Msa0254560:CDS 35.0%
! TTGCTGAGCTTATTGCTATT+TGG - chr2_2:48093460-48093479 Msa0254560:intron 35.0%
AAGAAATATCACGGGAAGTA+AGG + chr2_2:48093539-48093558 None:intergenic 35.0%
!!! CTTCTTTTTTTAGGAGGTTG+CGG - chr2_2:48093556-48093575 Msa0254560:intron 35.0%
!! ATTGATGACGATCTATAAGC+TGG - chr2_2:48093647-48093666 Msa0254560:intron 35.0%
CTATTGAGGACAAACAAAAC+TGG + chr2_2:48093709-48093728 None:intergenic 35.0%
!!! CAGTTTTGTTTGTCCTCAAT+AGG - chr2_2:48093707-48093726 Msa0254560:intron 35.0%
GTTGAGTACGTGTGTTTAAA+GGG - chr2_2:48093820-48093839 Msa0254560:intron 35.0%
TTGAGTACGTGTGTTTAAAG+GGG - chr2_2:48093821-48093840 Msa0254560:intron 35.0%
CTCTGTGAATTAAAAGTGAC+AGG - chr2_2:48093857-48093876 Msa0254560:intron 35.0%
!! AGGAGTATTAGTACAGTTTG+AGG - chr2_2:48094282-48094301 Msa0254560:intron 35.0%
! GGAGTATTAGTACAGTTTGA+GGG - chr2_2:48094283-48094302 Msa0254560:intron 35.0%
CACCAAAGACAAAAAGATGT+TGG - chr2_2:48094400-48094419 Msa0254560:intron 35.0%
! GACCAACATCTTTTTGTCTT+TGG + chr2_2:48094405-48094424 None:intergenic 35.0%
!! GATGAATAGTTTGGAGCTTT+TGG + chr2_2:48094586-48094605 None:intergenic 35.0%
! TAGATTTTTGCATCATAGCC+AGG + chr2_2:48094681-48094700 None:intergenic 35.0%
GACTGTATATACTGATCTAC+AGG - chr2_2:48094757-48094776 Msa0254560:intron 35.0%
! TTAGCAACTAATGGATCGAT+AGG + chr2_2:48094907-48094926 None:intergenic 35.0%
ACCATTAGGATTTACAGCAT+GGG + chr2_2:48095158-48095177 None:intergenic 35.0%
! TACTAATCCATTTGGCTTCA+GGG - chr2_2:48095507-48095526 Msa0254560:intron 35.0%
! TCTGAAATAGCTTCAGACAT+TGG + chr2_2:48095634-48095653 None:intergenic 35.0%
AAATGTTGTCACTACTTACC+TGG + chr2_2:48095770-48095789 None:intergenic 35.0%
CTGCATAAATGAATAGTCAG+TGG - chr2_2:48095942-48095961 Msa0254560:CDS 35.0%
AAAGTTAGAGGATGGAGTTA+AGG - chr2_2:48096005-48096024 Msa0254560:CDS 35.0%
TACAACTTTAGTTAGGTGTG+GGG - chr2_2:48096116-48096135 Msa0254560:five_prime_UTR 35.0%
GTTAAACCCTCAGATACTAT+TGG - chr2_2:48096172-48096191 Msa0254560:five_prime_UTR 35.0%
GATCTTTCCAATAGTATCTG+AGG + chr2_2:48096182-48096201 None:intergenic 35.0%
AGTTAACGGTGAATGTTGAC+CGG + chr2_2:48092128-48092147 None:intergenic 40.0%
CATTCACCGTTAACTAACTC+CGG - chr2_2:48092133-48092152 Msa0254560:three_prime_UTR 40.0%
TGATTGGATCTAAGAACGTG+AGG + chr2_2:48092170-48092189 None:intergenic 40.0%
!! CGGGAGAATTTTGATCTGAT+TGG + chr2_2:48092186-48092205 None:intergenic 40.0%
GCGTTTGAAGGAGTTGAATT+TGG + chr2_2:48092222-48092241 None:intergenic 40.0%
TACAAAACGACTGCGTTTGA+AGG + chr2_2:48092234-48092253 None:intergenic 40.0%
AGGAGAGAGAGAATAACAAG+AGG - chr2_2:48092414-48092433 Msa0254560:three_prime_UTR 40.0%
! TTCTCCGGTTTGAGAATGTA+TGG - chr2_2:48092473-48092492 Msa0254560:three_prime_UTR 40.0%
! TCTCCGGTTTGAGAATGTAT+GGG - chr2_2:48092474-48092493 Msa0254560:three_prime_UTR 40.0%
GTTCCCATACATTCTCAAAC+CGG + chr2_2:48092480-48092499 None:intergenic 40.0%
CTCTTTGTAATGAAGCTGGT+TGG - chr2_2:48092543-48092562 Msa0254560:three_prime_UTR 40.0%
TTACGATACGTTGTACCATC+AGG + chr2_2:48092578-48092597 None:intergenic 40.0%
TGATGGTACAACGTATCGTA+AGG - chr2_2:48092577-48092596 Msa0254560:intron 40.0%
TCTGTCTACACTGATACACT+CGG + chr2_2:48093028-48093047 None:intergenic 40.0%
GCCCCTCAAAATATTTCTCA+CGG + chr2_2:48093284-48093303 None:intergenic 40.0%
!! GACTTTTGAGGGCAATGAAA+TGG - chr2_2:48093351-48093370 Msa0254560:CDS 40.0%
GGTAGTTTAGGTGTGTGATT+TGG - chr2_2:48093428-48093447 Msa0254560:CDS 40.0%
! TATTTGGCAGAAGCTTTTGC+AGG - chr2_2:48093476-48093495 Msa0254560:intron 40.0%
CATTGCATGGTACTCTGATT+TGG - chr2_2:48093499-48093518 Msa0254560:intron 40.0%
GATCTATAAGCTGGAAAGAG+TGG - chr2_2:48093656-48093675 Msa0254560:intron 40.0%
AACCAAGGAAAGTCCTATTG+AGG + chr2_2:48093723-48093742 None:intergenic 40.0%
TCAATAGGACTTTCCTTGGT+TGG - chr2_2:48093722-48093741 Msa0254560:intron 40.0%
CAATAGGACTTTCCTTGGTT+GGG - chr2_2:48093723-48093742 Msa0254560:intron 40.0%
AAAGGAAAGAAACCCAACCA+AGG + chr2_2:48093738-48093757 None:intergenic 40.0%
GGTTGAGTACGTGTGTTTAA+AGG - chr2_2:48093819-48093838 Msa0254560:intron 40.0%
! CTGGCCTAATAAGTTTTGCT+TGG + chr2_2:48093948-48093967 None:intergenic 40.0%
ACTCCTACAAATGTCAGAGT+GGG + chr2_2:48094254-48094273 None:intergenic 40.0%
TACTCCTACAAATGTCAGAG+TGG + chr2_2:48094255-48094274 None:intergenic 40.0%
ACTCTGACATTTGTAGGAGT+AGG - chr2_2:48094254-48094273 Msa0254560:intron 40.0%
ATTTGTAGGAGTAGGACTGT+AGG - chr2_2:48094262-48094281 Msa0254560:intron 40.0%
CAATGGTAGAATTTAAGGGC+TGG - chr2_2:48094507-48094526 Msa0254560:intron 40.0%
!! CAGTGCTTTAAGGCTTGTTT+GGG + chr2_2:48094640-48094659 None:intergenic 40.0%
!! TCAGTGCTTTAAGGCTTGTT+TGG + chr2_2:48094641-48094660 None:intergenic 40.0%
ACATTCTTGCCCGCTTAAAA+AGG - chr2_2:48094704-48094723 Msa0254560:intron 40.0%
TGACATGGTAAGATGAACAC+GGG + chr2_2:48095075-48095094 None:intergenic 40.0%
CTGACATGGTAAGATGAACA+CGG + chr2_2:48095076-48095095 None:intergenic 40.0%
TCCCATGCTGTAAATCCTAA+TGG - chr2_2:48095154-48095173 Msa0254560:intron 40.0%
CACCATTAGGATTTACAGCA+TGG + chr2_2:48095159-48095178 None:intergenic 40.0%
GCTGTAAATCCTAATGGTGA+TGG - chr2_2:48095160-48095179 Msa0254560:intron 40.0%
AGGGAATTTCCATCACCATT+AGG + chr2_2:48095172-48095191 None:intergenic 40.0%
ATGGAAATTCCCTCATTCCA+TGG - chr2_2:48095179-48095198 Msa0254560:intron 40.0%
!! GTTTTTGAGCCATGGAATGA+GGG + chr2_2:48095191-48095210 None:intergenic 40.0%
AATATATAGCTGGGGAAGCT+TGG + chr2_2:48095245-48095264 None:intergenic 40.0%
CCAGTGTGAATATATAGCTG+GGG + chr2_2:48095253-48095272 None:intergenic 40.0%
GCCAGTGTGAATATATAGCT+GGG + chr2_2:48095254-48095273 None:intergenic 40.0%
AGCCAGTGTGAATATATAGC+TGG + chr2_2:48095255-48095274 None:intergenic 40.0%
!! CAAATGGATTAGTAGCGACT+AGG + chr2_2:48095501-48095520 None:intergenic 40.0%
CTAGTCGCTACTAATCCATT+TGG - chr2_2:48095499-48095518 Msa0254560:intron 40.0%
! CTACTAATCCATTTGGCTTC+AGG - chr2_2:48095506-48095525 Msa0254560:intron 40.0%
CATCTGATCCAGAATCTTCA+TGG + chr2_2:48095717-48095736 None:intergenic 40.0%
! GATGATTTAGAGCTCACTCT+TGG - chr2_2:48095733-48095752 Msa0254560:intron 40.0%
!! ATACCTGTAATGGATTGGGT+TGG - chr2_2:48096205-48096224 Msa0254560:five_prime_UTR 40.0%
ATACCAACCCAATCCATTAC+AGG + chr2_2:48096211-48096230 None:intergenic 40.0%
AAATGTACCTGCATGACCAA+AGG - chr2_2:48096243-48096262 Msa0254560:five_prime_UTR 40.0%
! CAATTCTCCGACGAGTTTTC+CGG - chr2_2:48092106-48092125 Msa0254560:three_prime_UTR 45.0%
ATGTTGACCGGAAAACTCGT+CGG + chr2_2:48092116-48092135 None:intergenic 45.0%
ACTTCGCCGGAGTTAGTTAA+CGG + chr2_2:48092142-48092161 None:intergenic 45.0%
TTGGATCTAAGAACGTGAGG+TGG + chr2_2:48092167-48092186 None:intergenic 45.0%
ATAGCAGCGAAGATCTTCTC+CGG - chr2_2:48092458-48092477 Msa0254560:three_prime_UTR 45.0%
TGTAGGTGCTAAAGAGCTCT+AGG + chr2_2:48092879-48092898 None:intergenic 45.0%
GCTTCACGCTTAAAAGCGAA+AGG + chr2_2:48093208-48093227 None:intergenic 45.0%
!! AAGCTTTTGCAGGCATTGCA+TGG - chr2_2:48093486-48093505 Msa0254560:intron 45.0%
GTCCTCAATAGGACTTTCCT+TGG - chr2_2:48093718-48093737 Msa0254560:intron 45.0%
TTCCCCACTCTGACATTTGT+AGG - chr2_2:48094248-48094267 Msa0254560:intron 45.0%
CTCCTACAAATGTCAGAGTG+GGG + chr2_2:48094253-48094272 None:intergenic 45.0%
! TTAAGGCTTGTTTGGGAGGA+CGG + chr2_2:48094633-48094652 None:intergenic 45.0%
!! TGCTTTAAGGCTTGTTTGGG+AGG + chr2_2:48094637-48094656 None:intergenic 45.0%
! TGTGATAGGTGGTTCTGCAA+TGG - chr2_2:48095045-48095064 Msa0254560:intron 45.0%
! GTGATAGGTGGTTCTGCAAT+GGG - chr2_2:48095046-48095065 Msa0254560:intron 45.0%
!! GGTTTTTGAGCCATGGAATG+AGG + chr2_2:48095192-48095211 None:intergenic 45.0%
!! GATGAGAGGTTTTTGAGCCA+TGG + chr2_2:48095199-48095218 None:intergenic 45.0%
TGGCTCAAAAACCTCTCATC+TGG - chr2_2:48095199-48095218 Msa0254560:intron 45.0%
! CTGATGATGATCCAGATGAG+AGG + chr2_2:48095213-48095232 None:intergenic 45.0%
CCCCAGCTATATATTCACAC+TGG - chr2_2:48095250-48095269 Msa0254560:intron 45.0%
ACCAATCTGGGTCAAGAACT+TGG + chr2_2:48095429-48095448 None:intergenic 45.0%
!! TTGACCCAGATTGGTTTGCT+GGG - chr2_2:48095434-48095453 Msa0254560:intron 45.0%
TGATCCCAGCAAACCAATCT+GGG + chr2_2:48095441-48095460 None:intergenic 45.0%
ATTAGTAGCGACTAGGCTGA+AGG + chr2_2:48095494-48095513 None:intergenic 45.0%
! TTCAGGGAAGAGGTTTTCTG+TGG - chr2_2:48095523-48095542 Msa0254560:intron 45.0%
AACATGTCCCACTTTGTCCA+GGG + chr2_2:48095570-48095589 None:intergenic 45.0%
!! AGTTGGTTTGGTGAAGCCTT+GGG - chr2_2:48095678-48095697 Msa0254560:intron 45.0%
GAGAGGATCCATGAAGATTC+TGG - chr2_2:48095706-48095725 Msa0254560:intron 45.0%
! CACTACTTACCTGGTCTTTG+AGG + chr2_2:48095761-48095780 None:intergenic 45.0%
TGAACTTCCTTTGGTCATGC+AGG + chr2_2:48096253-48096272 None:intergenic 45.0%
!! AATAAAAGAATAAAATAAAA+TGG + chr2_2:48096055-48096074 None:intergenic 5.0%
CCGGAAAAAAATCTCACCGC+CGG + chr2_2:48092359-48092378 None:intergenic 50.0%
!!! CCGGCGGTGAGATTTTTTTC+CGG - chr2_2:48092356-48092375 Msa0254560:three_prime_UTR 50.0%
! TTTTTCCGGCGAGATGACGT+CGG - chr2_2:48092370-48092389 Msa0254560:three_prime_UTR 50.0%
TTCTCTCTCTCCTTCCACGT+TGG + chr2_2:48092407-48092426 None:intergenic 50.0%
GCATGTGCAAGTGTCATGTC+TGG + chr2_2:48092809-48092828 None:intergenic 50.0%
CGACCAGATCTAACGTACAC+CGG + chr2_2:48093163-48093182 None:intergenic 50.0%
CGGTGTACGTTAGATCTGGT+CGG - chr2_2:48093161-48093180 Msa0254560:CDS 50.0%
GGTGTACGTTAGATCTGGTC+GGG - chr2_2:48093162-48093181 Msa0254560:CDS 50.0%
GTGTACGTTAGATCTGGTCG+GGG - chr2_2:48093163-48093182 Msa0254560:CDS 50.0%
! TTTGAGGGGCATAGATCTCG+AGG - chr2_2:48093294-48093313 Msa0254560:CDS 50.0%
! TTGAGGGGCATAGATCTCGA+GGG - chr2_2:48093295-48093314 Msa0254560:CDS 50.0%
GCATAGATCTCGAGGGTGAA+AGG - chr2_2:48093302-48093321 Msa0254560:CDS 50.0%
! CTTGTTTGGGAGGACGGTTT+TGG + chr2_2:48094627-48094646 None:intergenic 50.0%
TTTCAAGGGATGCAAGCCTG+CGG - chr2_2:48095012-48095031 Msa0254560:intron 50.0%
GAACGCATGGATGTGATAGG+TGG - chr2_2:48095034-48095053 Msa0254560:intron 50.0%
! CTTGGGTTGTAGGAAGCACA+GGG + chr2_2:48095100-48095119 None:intergenic 50.0%
! ACTTGGGTTGTAGGAAGCAC+AGG + chr2_2:48095101-48095120 None:intergenic 50.0%
AGGAAGAAGAGCCAGGACTT+GGG + chr2_2:48095117-48095136 None:intergenic 50.0%
AAGGAAGAAGAGCCAGGACT+TGG + chr2_2:48095118-48095137 None:intergenic 50.0%
TTTACAGCATGGGATGAGCG+CGG + chr2_2:48095148-48095167 None:intergenic 50.0%
AGGATCAGTCTACTCGTCCT+GGG - chr2_2:48095347-48095366 Msa0254560:intron 50.0%
GCCAAGTTCTTGACCCAGAT+TGG - chr2_2:48095425-48095444 Msa0254560:intron 50.0%
!! CTTGACCCAGATTGGTTTGC+TGG - chr2_2:48095433-48095452 Msa0254560:intron 50.0%
CTGATCCCAGCAAACCAATC+TGG + chr2_2:48095442-48095461 None:intergenic 50.0%
!! CAGATTGGTTTGCTGGGATC+AGG - chr2_2:48095440-48095459 Msa0254560:intron 50.0%
! TCCATTTGGCTTCAGGGAAG+AGG - chr2_2:48095513-48095532 Msa0254560:intron 50.0%
ACCTCTTCCCTGAAGCCAAA+TGG + chr2_2:48095517-48095536 None:intergenic 50.0%
ACATGTCCCACTTTGTCCAG+GGG + chr2_2:48095569-48095588 None:intergenic 50.0%
GAACATGTCCCACTTTGTCC+AGG + chr2_2:48095571-48095590 None:intergenic 50.0%
! TGTTCTCCAGCTTTAGCTGC+AGG - chr2_2:48095586-48095605 Msa0254560:intron 50.0%
ACCAACTGCACTGCTTCCAA+AGG + chr2_2:48095665-48095684 None:intergenic 50.0%
TGGAAGCAGTGCAGTTGGTT+TGG - chr2_2:48095666-48095685 Msa0254560:intron 50.0%
!! CAGTTGGTTTGGTGAAGCCT+TGG - chr2_2:48095677-48095696 Msa0254560:intron 50.0%
CTCTTGGTACCTCAAAGACC+AGG - chr2_2:48095749-48095768 Msa0254560:intron 50.0%
ACGTGAGGTGGTTACTTCGC+CGG + chr2_2:48092155-48092174 None:intergenic 55.0%
! TTTTCCGGCGAGATGACGTC+GGG - chr2_2:48092371-48092390 Msa0254560:three_prime_UTR 55.0%
GGTTGGATCGTTGAGCCTGA+TGG - chr2_2:48092560-48092579 Msa0254560:three_prime_UTR 55.0%
TCGCCGGTGTACGTTAGATC+TGG - chr2_2:48093157-48093176 Msa0254560:CDS 55.0%
ATCACATCCATGCGTTCCGC+AGG + chr2_2:48095031-48095050 None:intergenic 55.0%
GCGGAACGCATGGATGTGAT+AGG - chr2_2:48095031-48095050 Msa0254560:intron 55.0%
! AGGAAGCACAGGGACTGACA+TGG + chr2_2:48095090-48095109 None:intergenic 55.0%
GCTTCCTACAACCCAAGTCC+TGG - chr2_2:48095103-48095122 Msa0254560:intron 55.0%
! AGAGCCAGGACTTGGGTTGT+AGG + chr2_2:48095110-48095129 None:intergenic 55.0%
CTAGGGAAGGAAGAAGAGCC+AGG + chr2_2:48095124-48095143 None:intergenic 55.0%
TTACAGCATGGGATGAGCGC+GGG + chr2_2:48095147-48095166 None:intergenic 55.0%
TAGCTGGGGAAGCTTGGAAG+AGG + chr2_2:48095239-48095258 None:intergenic 55.0%
!! AGGAGTGACAGGAGCACTGA+TGG + chr2_2:48095278-48095297 None:intergenic 55.0%
GAGCTAAGTGGAGGAGTGAC+AGG + chr2_2:48095289-48095308 None:intergenic 55.0%
GCAGTTGGAGAGCTAAGTGG+AGG + chr2_2:48095298-48095317 None:intergenic 55.0%
CGAGCAGTTGGAGAGCTAAG+TGG + chr2_2:48095301-48095320 None:intergenic 55.0%
ACCCCAGAGGAAAGCTGACT+GGG - chr2_2:48095324-48095343 Msa0254560:intron 55.0%
TCCCAGTCAGCTTTCCTCTG+GGG + chr2_2:48095328-48095347 None:intergenic 55.0%
CTCCCAGTCAGCTTTCCTCT+GGG + chr2_2:48095329-48095348 None:intergenic 55.0%
GAGGATCAGTCTACTCGTCC+TGG - chr2_2:48095346-48095365 Msa0254560:intron 55.0%
ATCAGTCTACTCGTCCTGGG+TGG - chr2_2:48095350-48095369 Msa0254560:intron 55.0%
TCAGTCTACTCGTCCTGGGT+GGG - chr2_2:48095351-48095370 Msa0254560:intron 55.0%
GGTCAAGAACTTGGCGACCA+GGG + chr2_2:48095420-48095439 None:intergenic 55.0%
AGGAGAAGTTTGCCCGCTGT+GGG + chr2_2:48095470-48095489 None:intergenic 55.0%
TAGGAGAAGTTTGCCCGCTG+TGG + chr2_2:48095471-48095490 None:intergenic 55.0%
GTAGCGACTAGGCTGAAGGT+AGG + chr2_2:48095490-48095509 None:intergenic 55.0%
TTTGTCCAGGGGTCCACATG+CGG + chr2_2:48095558-48095577 None:intergenic 55.0%
ATGTGGACCCCTGGACAAAG+TGG - chr2_2:48095559-48095578 Msa0254560:intron 55.0%
TGTGGACCCCTGGACAAAGT+GGG - chr2_2:48095560-48095579 Msa0254560:intron 55.0%
TCAGAGCCTGCAGCTAAAGC+TGG + chr2_2:48095595-48095614 None:intergenic 55.0%
! GCCTTTGGAAGCAGTGCAGT+TGG - chr2_2:48095661-48095680 Msa0254560:intron 55.0%
!! GGTTTGGTGAAGCCTTGGGA+AGG - chr2_2:48095682-48095701 Msa0254560:intron 55.0%
TGAAGCCTTGGGAAGGAGAG+AGG - chr2_2:48095689-48095708 Msa0254560:intron 55.0%
TGGATCCTCTCTCCTTCCCA+AGG + chr2_2:48095697-48095716 None:intergenic 55.0%
TTTCCGGCGAGATGACGTCG+GGG - chr2_2:48092372-48092391 Msa0254560:three_prime_UTR 60.0%
GACGAGGCAACCAACGTGGA+AGG - chr2_2:48092394-48092413 Msa0254560:three_prime_UTR 60.0%
TCTGGTCGGGGTAGTGTCTG+AGG - chr2_2:48093175-48093194 Msa0254560:CDS 60.0%
ATGCAAGCCTGCGGAACGCA+TGG - chr2_2:48095021-48095040 Msa0254560:intron 60.0%
!! CTCTGGGGTGATCGAGCAGT+TGG + chr2_2:48095313-48095332 None:intergenic 60.0%
CAACTGCTCGATCACCCCAG+AGG - chr2_2:48095311-48095330 Msa0254560:intron 60.0%
CACCCCAGAGGAAAGCTGAC+TGG - chr2_2:48095323-48095342 Msa0254560:intron 60.0%
CCTCCCAGTCAGCTTTCCTC+TGG + chr2_2:48095330-48095349 None:intergenic 60.0%
CCAGAGGAAAGCTGACTGGG+AGG - chr2_2:48095327-48095346 Msa0254560:intron 60.0%
CAGTCTACTCGTCCTGGGTG+GGG - chr2_2:48095352-48095371 Msa0254560:intron 60.0%
TAGGAGGAGTGGAGGAAGGC+TGG + chr2_2:48095396-48095415 None:intergenic 60.0%
AGAACTTGGCGACCAGGGCT+AGG + chr2_2:48095415-48095434 None:intergenic 60.0%
GGGTCAAGAACTTGGCGACC+AGG + chr2_2:48095421-48095440 None:intergenic 60.0%
GGAGAAGTTTGCCCGCTGTG+GGG + chr2_2:48095469-48095488 None:intergenic 60.0%
GTGGCAGTGATTCCCGCATG+TGG - chr2_2:48095542-48095561 Msa0254560:intron 60.0%
TTGTCCAGGGGTCCACATGC+GGG + chr2_2:48095557-48095576 None:intergenic 60.0%
! CATGGGATGAGCGCGGGCTA+GGG + chr2_2:48095141-48095160 None:intergenic 65.0%
TCTACTCGTCCTGGGTGGGG+TGG - chr2_2:48095355-48095374 Msa0254560:intron 65.0%
CTACTCGTCCTGGGTGGGGT+GGG - chr2_2:48095356-48095375 Msa0254560:intron 65.0%
GGGCTAGGAGGAGTGGAGGA+AGG + chr2_2:48095400-48095419 None:intergenic 65.0%
TCCTCCACTCCTCCTAGCCC+TGG - chr2_2:48095400-48095419 Msa0254560:intron 65.0%
ACCAGGGCTAGGAGGAGTGG+AGG + chr2_2:48095404-48095423 None:intergenic 65.0%
ACTTGGCGACCAGGGCTAGG+AGG + chr2_2:48095412-48095431 None:intergenic 65.0%
GGGATCAGGATGCCCCACAG+CGG - chr2_2:48095454-48095473 Msa0254560:intron 65.0%
GGATCAGGATGCCCCACAGC+GGG - chr2_2:48095455-48095474 Msa0254560:intron 65.0%
GATTCCCGCATGTGGACCCC+TGG - chr2_2:48095550-48095569 Msa0254560:intron 65.0%
CGTCCCCGACGTCATCTCGC+CGG + chr2_2:48092378-48092397 None:intergenic 70.0%
GCGAGATGACGTCGGGGACG+AGG - chr2_2:48092378-48092397 Msa0254560:three_prime_UTR 70.0%
CGGGGACGAGGCAACCAACG+TGG - chr2_2:48092390-48092409 Msa0254560:three_prime_UTR 70.0%
!! GGATGAGCGCGGGCTAGGGA+AGG + chr2_2:48095137-48095156 None:intergenic 70.0%
GCATGGGATGAGCGCGGGCT+AGG + chr2_2:48095142-48095161 None:intergenic 70.0%
TACTGCTGCCCACCCCACCC+AGG + chr2_2:48095367-48095386 None:intergenic 70.0%
GCGACCAGGGCTAGGAGGAG+TGG + chr2_2:48095407-48095426 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 48092076 48096418 48092076 ID=Msa0254560;Name=Msa0254560
chr2_2 mRNA 48092076 48096418 48092076 ID=Msa0254560-mRNA-1;Parent=Msa0254560;Name=Msa0254560-mRNA-1;_AED=0.30;_eAED=0.30;_QI=307|1|1|1|1|1|3|511|323
chr2_2 exon 48092076 48092590 48092076 ID=Msa0254560-mRNA-1:exon:14542;Parent=Msa0254560-mRNA-1
chr2_2 exon 48092724 48093475 48092724 ID=Msa0254560-mRNA-1:exon:14541;Parent=Msa0254560-mRNA-1
chr2_2 exon 48095896 48096418 48095896 ID=Msa0254560-mRNA-1:exon:14540;Parent=Msa0254560-mRNA-1
chr2_2 five_prime_UTR 48096112 48096418 48096112 ID=Msa0254560-mRNA-1:five_prime_utr;Parent=Msa0254560-mRNA-1
chr2_2 CDS 48095896 48096111 48095896 ID=Msa0254560-mRNA-1:cds;Parent=Msa0254560-mRNA-1
chr2_2 CDS 48092724 48093475 48092724 ID=Msa0254560-mRNA-1:cds;Parent=Msa0254560-mRNA-1
chr2_2 CDS 48092587 48092590 48092587 ID=Msa0254560-mRNA-1:cds;Parent=Msa0254560-mRNA-1
chr2_2 three_prime_UTR 48092076 48092586 48092076 ID=Msa0254560-mRNA-1:three_prime_utr;Parent=Msa0254560-mRNA-1
Gene Sequence

>Msa0254560

ATGACGTCGGGGACGAGGCAACCAACGTGGAAGGAGAGAGAGAATAACAAGAGGAGAGAGAGAAGAAGAAGAGCTATAGCAGCGAAGATCTTCTCCGGTTTGAGAATGTATGGGAACTATAAGCTTCCGAAACATTGCGACAACAATGAAGTTCTCAAAGCTCTTTGTAATGAAGCTGGTTGGATCGTTGAGCCTGATGGTACAACGTATCGTAAGGGATGCAAGCCTGCGGAACGCATGGATGTGATAGGTGGTTCTGCAATGGGAAGCCCGTGTTCATCTTACCATGTCAGTCCCTGTGCTTCCTACAACCCAAGTCCTGGCTCTTCTTCCTTCCCTAGCCCGCGCTCATCCCATGCTGTAAATCCTAATGGTGATGGAAATTCCCTCATTCCATGGCTCAAAAACCTCTCATCTGGATCATCATCAGCATCCTCTTCCAAGCTTCCCCAGCTATATATTCACACTGGCTCCATCAGTGCTCCTGTCACTCCTCCACTTAGCTCTCCAACTGCTCGATCACCCCAGAGGAAAGCTGACTGGGAGGATCAGTCTACTCGTCCTGGGTGGGGTGGGCAGCAGTACTCTTTCCAGCCTTCCTCCACTCCTCCTAGCCCTGGTCGCCAAGTTCTTGACCCAGATTGGTTTGCTGGGATCAGGATGCCCCACAGCGGGCAAACTTCTCCTACCTTCAGCCTAGTCGCTACTAATCCATTTGGCTTCAGGGAAGAGGTTTTCTGTGGCAGTGATTCCCGCATGTGGACCCCTGGACAAAGTGGGACATGTTCTCCAGCTTTAGCTGCAGGCTCTGATCATAATGCTGACATACCAATGTCTGAAGCTATTTCAGATGAATTTGCCTTTGGAAGCAGTGCAGTTGGTTTGGTGAAGCCTTGGGAAGGAGAGAGGATCCATGAAGATTCTGGATCAGATGATTTAGAGCTCACTCTTGGTACCTCAAAGACCAGGTAA
Protein sequence

>Msa0254560

MTSGTRQPTWKERENNKRRERRRRAIAAKIFSGLRMYGNYKLPKHCDNNEVLKALCNEAGWIVEPDGTTYRKGCKPAERMDVIGGSAMGSPCSSYHVSPCASYNPSPGSSSFPSPRSSHAVNPNGDGNSLIPWLKNLSSGSSSASSSKLPQLYIHTGSISAPVTPPLSSPTARSPQRKADWEDQSTRPGWGGQQYSFQPSSTPPSPGRQVLDPDWFAGIRMPHSGQTSPTFSLVATNPFGFREEVFCGSDSRMWTPGQSGTCSPALAAGSDHNADIPMSEAISDEFAFGSSAVGLVKPWEGERIHEDSGSDDLELTLGTSKTR*