AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0332300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0332300 MtrunA17_Chr2g0315211 99.381 323 2 0 1 323 1 323 0.0 659
Msa0332300 MtrunA17_Chr2g0315201 74.303 323 76 1 1 323 1 316 9.57e-150 423
Msa0332300 MtrunA17_Chr1g0154651 38.629 321 108 11 6 323 14 248 1.90e-42 147
Msa0332300 MtrunA17_Chr3g0141401 41.742 333 148 14 3 321 12 312 3.48e-36 132
Msa0332300 MtrunA17_Chr5g0403631 43.860 342 138 10 6 321 9 322 9.22e-33 123
Msa0332300 MtrunA17_Chr5g0408851 40.870 115 65 2 17 131 61 172 2.59e-16 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0332300 AT1G78700.1 69.760 334 81 8 1 323 1 325 5.52e-132 379
Msa0332300 AT4G18890.1 61.585 328 77 9 1 323 1 284 2.89e-103 304
Msa0332300 AT4G18890.2 52.988 251 69 9 78 323 2 208 1.50e-63 200
Msa0332300 AT1G75080.2 40.385 364 120 14 6 323 23 335 1.22e-46 160
Msa0332300 AT1G75080.1 40.385 364 120 14 6 323 23 335 1.22e-46 160
Msa0332300 AT1G19350.3 41.160 362 116 15 6 321 44 354 7.79e-45 157
Msa0332300 AT1G19350.5 40.884 362 117 15 6 321 22 332 8.72e-45 156
Msa0332300 AT1G19350.1 40.884 362 117 15 6 321 22 332 8.72e-45 156
Msa0332300 AT1G19350.6 40.884 362 117 15 6 321 22 332 8.72e-45 156
Msa0332300 AT1G19350.4 40.884 362 117 15 6 321 22 332 8.72e-45 156
Msa0332300 AT3G50750.1 42.331 326 105 10 6 318 14 269 2.43e-41 145
Msa0332300 AT4G36780.1 50.685 219 76 7 6 211 16 215 3.41e-33 124
Msa0332300 AT5G45300.2 48.235 85 41 1 17 101 97 178 4.59e-16 79.3
Msa0332300 AT5G45300.3 47.059 85 44 1 17 101 111 194 1.20e-15 78.2
Msa0332300 AT5G45300.1 47.059 85 44 1 17 101 97 180 1.22e-15 78.2
Msa0332300 AT2G45880.1 53.623 69 29 1 11 76 74 142 6.04e-15 75.9

Find 169 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATTCGGATTGAATTAT+AGG 0.190929 2_4:-49203859 Msa0332300:three_prime_UTR
CTTGACCCAGATTGGTTTGC+TGG 0.249683 2_4:-49204714 Msa0332300:CDS
CTACTAATCCATTTGGCTTC+AGG 0.251618 2_4:-49204641 Msa0332300:CDS
ACGTTTGAAGGAGTTGAATT+TGG 0.272772 2_4:+49208175 None:intergenic
AATAAAAGAATAAAATAAAA+TGG 0.287996 2_4:+49204097 None:intergenic
TTCATATTCAAAGTAAAATT+AGG 0.296697 2_4:-49203924 Msa0332300:three_prime_UTR
CCTCCCAGTCAGCTTTCCTC+TGG 0.324519 2_4:+49204820 None:intergenic
GAGAGGATCCATGAAGATTC+TGG 0.328306 2_4:-49204441 Msa0332300:CDS
CACTACTTACCTGGTCTTTG+AGG 0.341054 2_4:+49204389 None:intergenic
CTGATCCCAGCAAACCAATC+TGG 0.350204 2_4:+49204708 None:intergenic
AGAAAATTGGAAAAGATATA+TGG 0.355572 2_4:+49203832 None:intergenic
AGGGAATTTCCATCACCATT+AGG 0.370323 2_4:+49204978 None:intergenic
CATCTGATCCAGAATCTTCA+TGG 0.372743 2_4:+49204433 None:intergenic
GCATGGGATGAGCGCGGGCT+AGG 0.380817 2_4:+49205008 None:intergenic
GTTAAACCCTCAGATACTAT+TGG 0.381335 2_4:-49203982 Msa0332300:three_prime_UTR
TTCTCCGGTTTGAGAATGTA+TGG 0.382953 2_4:-49207919 Msa0332300:CDS
CAGATTGGTTTGCTGGGATC+AGG 0.383352 2_4:-49204707 Msa0332300:CDS
TACTAATCCATTTGGCTTCA+GGG 0.383377 2_4:-49204640 Msa0332300:CDS
CTCCCAGTCAGCTTTCCTCT+GGG 0.391858 2_4:+49204821 None:intergenic
AATTTGCATTGAACTTCCTT+TGG 0.398308 2_4:+49203875 None:intergenic
AAGGAAGAAGAGCCAGGACT+TGG 0.403188 2_4:+49205032 None:intergenic
ATATTATGTAGAAAAGTTAG+AGG 0.408051 2_4:-49204156 Msa0332300:three_prime_UTR
TTATGTATACAACTTTAGTT+AGG 0.409089 2_4:-49204045 Msa0332300:three_prime_UTR
GAGGATCAGTCTACTCGTCC+TGG 0.410691 2_4:-49204801 Msa0332300:CDS
CTAGTCGCTACTAATCCATT+TGG 0.412992 2_4:-49204648 Msa0332300:CDS
AGAGCCAGGACTTGGGTTGT+AGG 0.415820 2_4:+49205040 None:intergenic
ATTTCAGATGAATTTGCCTT+TGG 0.420372 2_4:-49204501 Msa0332300:CDS
TCTACTCGTCCTGGGTGGGG+TGG 0.421075 2_4:-49204792 Msa0332300:CDS
AAGGAAGTTCAATGCAAATT+CGG 0.422861 2_4:-49203872 Msa0332300:three_prime_UTR
TACAAAACGACTACGTTTGA+AGG 0.423304 2_4:+49208163 None:intergenic
CTACTCGTCCTGGGTGGGGT+GGG 0.424088 2_4:-49204791 Msa0332300:CDS
TGGAAGCAGTGCAGTTGGTT+TGG 0.426703 2_4:-49204481 Msa0332300:CDS
AAAGTTAGAGGATGGAGTTA+AGG 0.427651 2_4:-49204144 Msa0332300:three_prime_UTR
GAGCTAAGTGGAGGAGTGAC+AGG 0.433832 2_4:+49204861 None:intergenic
TCAATATACCTGTAATGGAT+TGG 0.434527 2_4:-49203954 Msa0332300:three_prime_UTR
AAAGATCAATATACCTGTAA+TGG 0.435716 2_4:-49203959 Msa0332300:three_prime_UTR
AGAATAACAAGAGGAGAGAG+AGG 0.437244 2_4:-49207969 Msa0332300:CDS
ATACCAACCCAATCCATTAC+AGG 0.437562 2_4:+49203946 None:intergenic
AATATATAGCTGCGGAAGCT+TGG 0.439819 2_4:+49204905 None:intergenic
ATTTGGAAGAAATTGAGAAC+GGG 0.448456 2_4:+49208192 None:intergenic
TTGACCCAGATTGGTTTGCT+GGG 0.448546 2_4:-49204713 Msa0332300:CDS
ACCAATCTGGGTCAAGAACT+TGG 0.450542 2_4:+49204721 None:intergenic
CAATATACCTGTAATGGATT+GGG 0.451636 2_4:-49203953 Msa0332300:three_prime_UTR
ACCTCTTCCCTGAAGCCAAA+TGG 0.452419 2_4:+49204633 None:intergenic
AGACTCAAATTTCATATTGA+GGG 0.452575 2_4:+49204182 None:intergenic
TCCCATGCTGTAAATCCTAA+TGG 0.453038 2_4:-49204993 Msa0332300:CDS
GCCAAGTTCTTGACCCAGAT+TGG 0.457814 2_4:-49204722 Msa0332300:CDS
TAGGAGGAGTGGAGGAAGGC+TGG 0.458194 2_4:+49204754 None:intergenic
TGTTCTCCAGCTTTAGCTGC+AGG 0.458482 2_4:-49204561 Msa0332300:CDS
TCCTCCACTCCTCCTAGCCC+TGG 0.459964 2_4:-49204747 Msa0332300:CDS
TGAACTTCCTTTGGTCATGC+AGG 0.467251 2_4:+49203884 None:intergenic
TCATTGTTATCGCAATGTTT+CGG 0.469180 2_4:+49207883 None:intergenic
GAACATGTCCCACTTTGTCC+AGG 0.469503 2_4:+49204579 None:intergenic
GGGTCAAGAACTTGGCGACC+AGG 0.476781 2_4:+49204729 None:intergenic
CAGACTCAAATTTCATATTG+AGG 0.479861 2_4:+49204181 None:intergenic
TCCATTTGGCTTCAGGGAAG+AGG 0.483652 2_4:-49204634 Msa0332300:CDS
CTCTGGGGTGATCGAGCAGT+TGG 0.483752 2_4:+49204837 None:intergenic
TATGTAGAAAAGTTAGAGGA+TGG 0.484664 2_4:-49204152 Msa0332300:three_prime_UTR
AGAACTTGGCGACCAGGGCT+AGG 0.484854 2_4:+49204735 None:intergenic
AGTTAACGGTTAATGTTGAC+CGG 0.484936 2_4:+49208269 None:intergenic
AGTTGGTTTGGTGAAGCCTT+GGG 0.485013 2_4:-49204469 Msa0332300:CDS
GGATCAGGATGCCCCACAGC+GGG 0.486389 2_4:-49204692 Msa0332300:CDS
GCCTTTGGAAGCAGTGCAGT+TGG 0.487429 2_4:-49204486 Msa0332300:CDS
CACCCCAGAGGAAAGCTGAC+TGG 0.487819 2_4:-49204824 Msa0332300:CDS
GCGGAACGCATGGATGTGAT+AGG 0.488603 2_4:-49205116 Msa0332300:CDS
AGGAGAAGTTTGCCCGCTGT+GGG 0.488942 2_4:+49204680 None:intergenic
CATGGGATGAGCGCGGGCTA+GGG 0.493897 2_4:+49205009 None:intergenic
ACTTCGCCGGAGTTAGTTAA+CGG 0.497778 2_4:+49208255 None:intergenic
TCAGAGCCTGCAGCTAAAGC+TGG 0.499118 2_4:+49204555 None:intergenic
GATTCCCGCATGTGGACCCC+TGG 0.499359 2_4:-49204597 Msa0332300:CDS
ATGCAAGCCTGCGGAACGCA+TGG 0.500040 2_4:-49205126 Msa0332300:CDS
CATGATTGACCAAAATGAAA+GGG 0.501546 2_4:+49204004 None:intergenic
AAAGCTCTTTGTAATGAAGC+TGG 0.501704 2_4:-49207853 Msa0332300:CDS
CTCTTTGTAATGAAGCTGGT+TGG 0.502741 2_4:-49207849 Msa0332300:CDS
AGCTCTTTGAAGATATGAAT+CGG 0.504729 2_4:+49208121 None:intergenic
ACTTGGGTTGTAGGAAGCAC+AGG 0.505215 2_4:+49205049 None:intergenic
GCTTCCTACAACCCAAGTCC+TGG 0.505291 2_4:-49205044 Msa0332300:CDS
GATGATTTAGAGCTCACTCT+TGG 0.505956 2_4:-49204414 Msa0332300:CDS
TGGATCCTCTCTCCTTCCCA+AGG 0.506658 2_4:+49204453 None:intergenic
CAGTTGGTTTGGTGAAGCCT+TGG 0.507522 2_4:-49204470 Msa0332300:CDS
TCAGTCTACTCGTCCTGGGT+GGG 0.507843 2_4:-49204796 Msa0332300:CDS
GCGACCAGGGCTAGGAGGAG+TGG 0.508618 2_4:+49204743 None:intergenic
TTACGATACGTTGTACCATC+AGG 0.508951 2_4:+49207817 None:intergenic
GGATGAGCGCGGGCTAGGGA+AGG 0.515742 2_4:+49205013 None:intergenic
GTTCCCATACATTCTCAAAC+CGG 0.515743 2_4:+49207915 None:intergenic
ACCCCAGAGGAAAGCTGACT+GGG 0.516090 2_4:-49204823 Msa0332300:CDS
GATCTTTCCAATAGTATCTG+AGG 0.516108 2_4:+49203975 None:intergenic
ACATGATTGACCAAAATGAA+AGG 0.517512 2_4:+49204003 None:intergenic
CAGTCTACTCGTCCTGGGTG+GGG 0.517746 2_4:-49204795 Msa0332300:CDS
CTAGGGAAGGAAGAAGAGCC+AGG 0.519399 2_4:+49205026 None:intergenic
ATCACATCCATGCGTTCCGC+AGG 0.519528 2_4:+49205119 None:intergenic
AGGAGTGACAGGAGCACTGA+TGG 0.525130 2_4:+49204872 None:intergenic
TGATCCCAGCAAACCAATCT+GGG 0.525877 2_4:+49204709 None:intergenic
CACCATTAGGATTTACAGCA+TGG 0.525920 2_4:+49204991 None:intergenic
GTGATAGGTGGTTCTGCAAT+GGG 0.525969 2_4:-49205101 Msa0332300:CDS
TCTGAAATAGCTTCAGACAT+TGG 0.527497 2_4:+49204516 None:intergenic
GCTAGATGACGTCGGGGACG+AGG 0.535162 2_4:-49208014 Msa0332300:exon
TATACAACTTTAGTTAGGTG+TGG 0.535701 2_4:-49204040 Msa0332300:three_prime_UTR
CGTCCCCGACGTCATCTAGC+CGG 0.536345 2_4:+49208017 None:intergenic
TTGTCCAGGGGTCCACATGC+GGG 0.536824 2_4:+49204593 None:intergenic
ATCTTTCCAATAGTATCTGA+GGG 0.539699 2_4:+49203976 None:intergenic
ATACAACTTTAGTTAGGTGT+GGG 0.543542 2_4:-49204039 Msa0332300:three_prime_UTR
TAGGAGAAGTTTGCCCGCTG+TGG 0.548726 2_4:+49204679 None:intergenic
GGGCTAGGAGGAGTGGAGGA+AGG 0.549534 2_4:+49204750 None:intergenic
AGGATCAGTCTACTCGTCCT+GGG 0.551485 2_4:-49204800 Msa0332300:CDS
AATTTGGAAGAAATTGAGAA+CGG 0.555130 2_4:+49208191 None:intergenic
ATGGAAATTCCCTCATTCCA+TGG 0.555829 2_4:-49204968 Msa0332300:CDS
TTCTCTCTCTCCTTCCACGT+TGG 0.560859 2_4:+49207988 None:intergenic
GCTGTAAATCCTAATGGTGA+TGG 0.562331 2_4:-49204987 Msa0332300:CDS
TAGCTGCGGAAGCTTGGAAG+AGG 0.564442 2_4:+49204911 None:intergenic
ACCAGGGCTAGGAGGAGTGG+AGG 0.565432 2_4:+49204746 None:intergenic
ATAGCAGCGAAGATCTTCTC+CGG 0.568682 2_4:-49207934 Msa0332300:CDS
GACGAGGCAACCAACGTGGA+AGG 0.571428 2_4:-49207998 Msa0332300:CDS
ATCAGTCTACTCGTCCTGGG+TGG 0.572626 2_4:-49204797 Msa0332300:CDS
TTTGTCCAGGGGTCCACATG+CGG 0.572765 2_4:+49204592 None:intergenic
AACATGTCCCACTTTGTCCA+GGG 0.573471 2_4:+49204580 None:intergenic
CGAGCAGTTGGAGAGCTAAG+TGG 0.574747 2_4:+49204849 None:intergenic
ACCATTAGGATTTACAGCAT+GGG 0.576979 2_4:+49204992 None:intergenic
ACGTGAGGTGGTTACTTCGC+CGG 0.577792 2_4:+49208242 None:intergenic
TCTCCGGTTTGAGAATGTAT+GGG 0.580133 2_4:-49207918 Msa0332300:CDS
AGGAAGAAGAGCCAGGACTT+GGG 0.580376 2_4:+49205033 None:intergenic
CAAATGGATTAGTAGCGACT+AGG 0.580823 2_4:+49204649 None:intergenic
ACCAACTGCACTGCTTCCAA+AGG 0.582208 2_4:+49204485 None:intergenic
TCCCAGTCAGCTTTCCTCTG+GGG 0.589485 2_4:+49204822 None:intergenic
TTACAGCATGGGATGAGCGC+GGG 0.592384 2_4:+49205003 None:intergenic
TGTGATAGGTGGTTCTGCAA+TGG 0.592423 2_4:-49205102 Msa0332300:CDS
GGTTGGATCGTTGAGCCTGA+TGG 0.594077 2_4:-49207832 Msa0332300:CDS
ATGTGGACCCCTGGACAAAG+TGG 0.596230 2_4:-49204588 Msa0332300:CDS
GGTCAAGAACTTGGCGACCA+GGG 0.596349 2_4:+49204730 None:intergenic
GGTTTGGTGAAGCCTTGGGA+AGG 0.598437 2_4:-49204465 Msa0332300:CDS
TGATGGTACAACGTATCGTA+AGG 0.599548 2_4:-49207815 Msa0332300:intron
GGAGAAGTTTGCCCGCTGTG+GGG 0.600569 2_4:+49204681 None:intergenic
CATTAACCGTTAACTAACTC+CGG 0.600897 2_4:-49208261 Msa0332300:five_prime_UTR
AGGAGAGAGAGAATAACAAG+AGG 0.603214 2_4:-49207978 Msa0332300:CDS
TGAAGCCTTGGGAAGGAGAG+AGG 0.605206 2_4:-49204458 Msa0332300:CDS
AAATGTACCTGCATGACCAA+AGG 0.606651 2_4:-49203891 Msa0332300:three_prime_UTR
CTCTTGGTACCTCAAAGACC+AGG 0.612700 2_4:-49204398 Msa0332300:intron
GTGGCAGTGATTCCCGCATG+TGG 0.613531 2_4:-49204605 Msa0332300:CDS
GACTCAAATTTCATATTGAG+GGG 0.622482 2_4:+49204183 None:intergenic
GTAGCGACTAGGCTGAAGGT+AGG 0.624575 2_4:+49204660 None:intergenic
TACTGCTGCCCACCCCACCC+AGG 0.630033 2_4:+49204783 None:intergenic
ATTAGTAGCGACTAGGCTGA+AGG 0.637373 2_4:+49204656 None:intergenic
ACTTGGCGACCAGGGCTAGG+AGG 0.641842 2_4:+49204738 None:intergenic
AATTGGAAAAGATATATGGT+AGG 0.642271 2_4:+49203836 None:intergenic
TGTGGACCCCTGGACAAAGT+GGG 0.642302 2_4:-49204587 Msa0332300:CDS
CTGACATGGTAAGATGAACA+CGG 0.642363 2_4:+49205074 None:intergenic
ATGTTGACCGGAAAACTCGT+CGG 0.642587 2_4:+49208281 None:intergenic
TACAACTTTAGTTAGGTGTG+GGG 0.643760 2_4:-49204038 Msa0332300:three_prime_UTR
ATACCTGTAATGGATTGGGT+TGG 0.647510 2_4:-49203949 Msa0332300:three_prime_UTR
TTTCAAGGGATGCAAGCCTG+CGG 0.653639 2_4:-49205135 Msa0332300:intron
GCAGTTGGAGAGCTAAGTGG+AGG 0.657333 2_4:+49204852 None:intergenic
TTTACAGCATGGGATGAGCG+CGG 0.658189 2_4:+49205002 None:intergenic
CCGCAGCTATATATTCACAC+TGG 0.658262 2_4:-49204897 Msa0332300:CDS
CTGCATAAATGAATAGTCAG+TGG 0.662411 2_4:-49204207 Msa0332300:three_prime_UTR
AGGAAGCACAGGGACTGACA+TGG 0.663416 2_4:+49205060 None:intergenic
CGGGGACGAGGCAACCAACG+TGG 0.666818 2_4:-49208002 Msa0332300:CDS
CTTGGGTTGTAGGAAGCACA+GGG 0.669094 2_4:+49205050 None:intergenic
CCAGAGGAAAGCTGACTGGG+AGG 0.670133 2_4:-49204820 Msa0332300:CDS
ACATGTCCCACTTTGTCCAG+GGG 0.671696 2_4:+49204581 None:intergenic
TGACATGGTAAGATGAACAC+GGG 0.677171 2_4:+49205075 None:intergenic
TGATTGGATCTAAGAACGTG+AGG 0.680052 2_4:+49208227 None:intergenic
TTGGATCTAAGAACGTGAGG+TGG 0.690870 2_4:+49208230 None:intergenic
CTGATGATGATCCAGATGAG+AGG 0.693997 2_4:+49204937 None:intergenic
TCTTTGAAGATATGAATCGG+AGG 0.701302 2_4:+49208124 None:intergenic
GAACGCATGGATGTGATAGG+TGG 0.705174 2_4:-49205113 Msa0332300:CDS
CCAGTGTGAATATATAGCTG+CGG 0.708057 2_4:+49204897 None:intergenic
GGGATCAGGATGCCCCACAG+CGG 0.711509 2_4:-49204693 Msa0332300:CDS
CAACTGCTCGATCACCCCAG+AGG 0.741309 2_4:-49204836 Msa0332300:CDS
TTTCCGGCTAGATGACGTCG+GGG 0.741931 2_4:-49208020 Msa0332300:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTAATTTTAGTATTAATT+TGG - chr2_4:49204330-49204349 Msa0332300:intron 10.0%
!!! TGATATATTTTTTTGTTCAT+CGG - chr2_4:49203972-49203991 Msa0332300:three_prime_UTR 15.0%
!! CATAATAATTTCAACAAAAA+TGG + chr2_4:49204662-49204681 None:intergenic 15.0%
!!! TATGATTTTGTTGTTATTTT+TGG - chr2_4:49204758-49204777 Msa0332300:CDS 15.0%
!!! GAAAAAAAAATGGTATTTTT+AGG - chr2_4:49205001-49205020 Msa0332300:CDS 15.0%
!! AAAAATTCACAAATTCAAAA+GGG + chr2_4:49205073-49205092 None:intergenic 15.0%
!! TAAAAATTCACAAATTCAAA+AGG + chr2_4:49205074-49205093 None:intergenic 15.0%
!!! TTTGAATTTGTGAATTTTTA+AGG - chr2_4:49205074-49205093 Msa0332300:CDS 15.0%
!!! TTGAATTTGTGAATTTTTAA+GGG - chr2_4:49205075-49205094 Msa0332300:CDS 15.0%
!! TAAAAAAAGAAGAAATATCA+CGG + chr2_4:49205225-49205244 None:intergenic 15.0%
!!! GTCAATATTTTTTTTTTTGA+AGG + chr2_4:49205706-49205725 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG - chr2_4:49205777-49205796 Msa0332300:intron 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG - chr2_4:49205778-49205797 Msa0332300:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr2_4:49205842-49205861 Msa0332300:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr2_4:49205843-49205862 Msa0332300:intron 15.0%
!!! GACACTTTTTTTTAAAAAAT+GGG - chr2_4:49205912-49205931 Msa0332300:intron 15.0%
!! TAATGAAAATGTTTATTTCA+AGG - chr2_4:49206906-49206925 Msa0332300:intron 15.0%
!! AATGAAAATGTTTATTTCAA+GGG - chr2_4:49206907-49206926 Msa0332300:intron 15.0%
!! TTCATATTCAAAGTAAAATT+AGG - chr2_4:49208132-49208151 Msa0332300:five_prime_UTR 15.0%
!!! TTTATTGTTTTTTTCTTCAC+CGG - chr2_4:49204001-49204020 Msa0332300:three_prime_UTR 20.0%
!! AAAAAAAATTGTTATGCATG+TGG - chr2_4:49204431-49204450 Msa0332300:CDS 20.0%
!! AAAAAAATTGTTATGCATGT+GGG - chr2_4:49204432-49204451 Msa0332300:CDS 20.0%
!! TGAAATTATTATGTGTATCT+AGG - chr2_4:49204669-49204688 Msa0332300:CDS 20.0%
!!! TTGTTGTTATTTTTGGTTTA+TGG - chr2_4:49204765-49204784 Msa0332300:CDS 20.0%
!!! GTTAGATTCTTTCTTTATTT+AGG - chr2_4:49204809-49204828 Msa0332300:CDS 20.0%
!!! AAAAATGGTATTTTTAGGTT+TGG - chr2_4:49205006-49205025 Msa0332300:CDS 20.0%
!! AAAAAAAGAAGAAATATCAC+GGG + chr2_4:49205224-49205243 None:intergenic 20.0%
!!! GTGATATTTCTTCTTTTTTT+AGG - chr2_4:49205224-49205243 Msa0332300:intron 20.0%
!!! ATATTTCTTCTTTTTTTAGG+AGG - chr2_4:49205227-49205246 Msa0332300:intron 20.0%
!! AATAAATGCAAAAACGAAAA+TGG + chr2_4:49205446-49205465 None:intergenic 20.0%
!!! GTTTTTGCATTTATTGTTTT+TGG - chr2_4:49205451-49205470 Msa0332300:intron 20.0%
!! AAAAGATGAATAGAAAAATG+TGG - chr2_4:49205475-49205494 Msa0332300:intron 20.0%
!! TGAACAAAAATTAACCAAAA+TGG - chr2_4:49205568-49205587 Msa0332300:intron 20.0%
!!! ATATGATATGTCAATTTTGT+AGG + chr2_4:49205683-49205702 None:intergenic 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG - chr2_4:49205779-49205798 Msa0332300:intron 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr2_4:49205802-49205821 Msa0332300:intron 20.0%
!!! GGACACTTTTTTTTAAAAAA+TGG - chr2_4:49205911-49205930 Msa0332300:intron 20.0%
!! AATATACTAAAAGCTATCAA+TGG - chr2_4:49206399-49206418 Msa0332300:intron 20.0%
!! AGATTTAATTCCTTTATAAG+CGG + chr2_4:49206626-49206645 None:intergenic 20.0%
!!! ATATTAGATGCTTTATTGAA+GGG - chr2_4:49206768-49206787 Msa0332300:intron 20.0%
!!! TATATCATTTTAGCAACTAA+TGG + chr2_4:49206825-49206844 None:intergenic 20.0%
!! ATATTATGTAGAAAAGTTAG+AGG - chr2_4:49207900-49207919 Msa0332300:CDS 20.0%
!! TTATGTATACAACTTTAGTT+AGG - chr2_4:49208011-49208030 Msa0332300:CDS 20.0%
!! AGAAAATTGGAAAAGATATA+TGG + chr2_4:49208227-49208246 None:intergenic 20.0%
!! AAAAACAAGTGATAGAAAAT+TGG + chr2_4:49208240-49208259 None:intergenic 20.0%
!!! TGTTTTTCTGATTTTATTTC+AGG - chr2_4:49208253-49208272 Msa0332300:five_prime_UTR 20.0%
!!! GTTTTTCTGATTTTATTTCA+GGG - chr2_4:49208254-49208273 Msa0332300:five_prime_UTR 20.0%
!! TTTCAGAAATCTAAGAAAAA+TGG + chr2_4:49208292-49208311 None:intergenic 20.0%
! AATTTGGAAGAAATTGAGAA+CGG + chr2_4:49203868-49203887 None:intergenic 25.0%
! AAAAAATTGTTATGCATGTG+GGG - chr2_4:49204433-49204452 Msa0332300:CDS 25.0%
! GTAATGTGATTACAAGAATT+AGG - chr2_4:49204787-49204806 Msa0332300:CDS 25.0%
!!! TGAATTTTTAAGGGTAGTTT+TGG - chr2_4:49205084-49205103 Msa0332300:CDS 25.0%
! TAGATCGTCATCAATAATAA+AGG + chr2_4:49205319-49205338 None:intergenic 25.0%
! ACGAAAATGGAAAAAGTAAA+AGG + chr2_4:49205433-49205452 None:intergenic 25.0%
! ACAGTATATAAAACATCAAC+TGG + chr2_4:49205644-49205663 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr2_4:49205801-49205820 Msa0332300:intron 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG - chr2_4:49205889-49205908 Msa0332300:intron 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG - chr2_4:49205890-49205909 Msa0332300:intron 25.0%
!! TCTATTTGGGATATTTAATC+TGG + chr2_4:49206000-49206019 None:intergenic 25.0%
! AACATTGAAGAGTTCTATTT+GGG + chr2_4:49206013-49206032 None:intergenic 25.0%
! TTACTAGTGTTCTTCAATAA+TGG - chr2_4:49206043-49206062 Msa0332300:intron 25.0%
! AGAATTATTTAACAGAACGT+AGG + chr2_4:49206362-49206381 None:intergenic 25.0%
! CTATCAATGGTAGAATTTAA+GGG - chr2_4:49206412-49206431 Msa0332300:intron 25.0%
!!! AATCAAAATCATTTTTGCAG+TGG + chr2_4:49206452-49206471 None:intergenic 25.0%
! GAAAAAAGAGATGAATAGTT+TGG + chr2_4:49206504-49206523 None:intergenic 25.0%
! GATTTAATTCCTTTATAAGC+GGG + chr2_4:49206625-49206644 None:intergenic 25.0%
! GAAAAAGAACTTCCTATTAT+TGG + chr2_4:49206711-49206730 None:intergenic 25.0%
!! AAAATATAACTTGCATGCAA+TGG + chr2_4:49206742-49206761 None:intergenic 25.0%
!! CATATTAGATGCTTTATTGA+AGG - chr2_4:49206767-49206786 Msa0332300:intron 25.0%
!!! ATTTATGCAGCACTTTTTTT+TGG + chr2_4:49207839-49207858 None:intergenic 25.0%
! AGACTCAAATTTCATATTGA+GGG + chr2_4:49207877-49207896 None:intergenic 25.0%
!!! ATTTTTCAACCCTTTCATTT+TGG - chr2_4:49208043-49208062 Msa0332300:five_prime_UTR 25.0%
! AAAGATCAATATACCTGTAA+TGG - chr2_4:49208097-49208116 Msa0332300:five_prime_UTR 25.0%
! AATTGGAAAAGATATATGGT+AGG + chr2_4:49208223-49208242 None:intergenic 25.0%
ATTTGGAAGAAATTGAGAAC+GGG + chr2_4:49203867-49203886 None:intergenic 30.0%
! AGCTCTTTGAAGATATGAAT+CGG + chr2_4:49203938-49203957 None:intergenic 30.0%
TCATTGTTATCGCAATGTTT+CGG + chr2_4:49204176-49204195 None:intergenic 30.0%
CAATGATTCTCCAAATCAAA+AGG - chr2_4:49204518-49204537 Msa0332300:CDS 30.0%
ATTATGTGTATCTAGGTGTT+TGG - chr2_4:49204676-49204695 Msa0332300:CDS 30.0%
!! ATCCGTGAGAAATATTTTGA+GGG - chr2_4:49204956-49204975 Msa0332300:CDS 30.0%
AGGGTGAAAGGAAAAAAAAA+TGG - chr2_4:49204991-49205010 Msa0332300:CDS 30.0%
!!! TTTTTAGGTTTGGACTTTTG+AGG - chr2_4:49205016-49205035 Msa0332300:CDS 30.0%
!!! TTTTAGGTTTGGACTTTTGA+GGG - chr2_4:49205017-49205036 Msa0332300:CDS 30.0%
!! ATTGATGACGATCTATAAAC+TGG - chr2_4:49205324-49205343 Msa0332300:intron 30.0%
!!! AACTGTATTGATTGCCATTT+TGG + chr2_4:49205585-49205604 None:intergenic 30.0%
TACTCCAAGCAAAACTTATT+AGG - chr2_4:49205618-49205637 Msa0332300:intron 30.0%
CAAAGTGGGTCAATTAAATT+GGG + chr2_4:49205742-49205761 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG - chr2_4:49205786-49205805 Msa0332300:intron 30.0%
AAAAAATGGGTCAGTTATTC+CGG - chr2_4:49205925-49205944 Msa0332300:intron 30.0%
GAACATTGAAGAGTTCTATT+TGG + chr2_4:49206014-49206033 None:intergenic 30.0%
ACTCTTCAATGTTCAACTAT+AGG - chr2_4:49206020-49206039 Msa0332300:intron 30.0%
! AGTGTTCTTCAATAATGGAA+TGG - chr2_4:49206048-49206067 Msa0332300:intron 30.0%
!! GTTTCTAGTAACTGATTCAA+TGG - chr2_4:49206221-49206240 Msa0332300:intron 30.0%
AAAATCAATACATGCAGAGA+AGG + chr2_4:49206284-49206303 None:intergenic 30.0%
GCTATCAATGGTAGAATTTA+AGG - chr2_4:49206411-49206430 Msa0332300:intron 30.0%
TTGCTACAATGTCCAATAAT+AGG - chr2_4:49206696-49206715 Msa0332300:intron 30.0%
! GCATGCAAGTTATATTTTGT+TGG - chr2_4:49206744-49206763 Msa0332300:intron 30.0%
ATTTCAGATGAATTTGCCTT+TGG - chr2_4:49207555-49207574 Msa0332300:intron 30.0%
AGTGACAACATTTGAAAAAC+TGG - chr2_4:49207686-49207705 Msa0332300:intron 30.0%
GTGACAACATTTGAAAAACT+GGG - chr2_4:49207687-49207706 Msa0332300:intron 30.0%
GACTCAAATTTCATATTGAG+GGG + chr2_4:49207876-49207895 None:intergenic 30.0%
CAGACTCAAATTTCATATTG+AGG + chr2_4:49207878-49207897 None:intergenic 30.0%
TATGTAGAAAAGTTAGAGGA+TGG - chr2_4:49207904-49207923 Msa0332300:CDS 30.0%
TATACAACTTTAGTTAGGTG+TGG - chr2_4:49208016-49208035 Msa0332300:exon 30.0%
ATACAACTTTAGTTAGGTGT+GGG - chr2_4:49208017-49208036 Msa0332300:exon 30.0%
CATGATTGACCAAAATGAAA+GGG + chr2_4:49208055-49208074 None:intergenic 30.0%
ACATGATTGACCAAAATGAA+AGG + chr2_4:49208056-49208075 None:intergenic 30.0%
ATCTTTCCAATAGTATCTGA+GGG + chr2_4:49208083-49208102 None:intergenic 30.0%
!! TCAATATACCTGTAATGGAT+TGG - chr2_4:49208102-49208121 Msa0332300:five_prime_UTR 30.0%
!! CAATATACCTGTAATGGATT+GGG - chr2_4:49208103-49208122 Msa0332300:five_prime_UTR 30.0%
AATTTGCATTGAACTTCCTT+TGG + chr2_4:49208184-49208203 None:intergenic 30.0%
AAGGAAGTTCAATGCAAATT+CGG - chr2_4:49208184-49208203 Msa0332300:five_prime_UTR 30.0%
GCAAATTCGGATTGAATTAT+AGG - chr2_4:49208197-49208216 Msa0332300:five_prime_UTR 30.0%
!! TTTTTGAAGAAACGCGTTGA+AGG + chr2_4:49203741-49203760 None:intergenic 35.0%
AGTTAACGGTTAATGTTGAC+CGG + chr2_4:49203790-49203809 None:intergenic 35.0%
CATTAACCGTTAACTAACTC+CGG - chr2_4:49203795-49203814 Msa0332300:three_prime_UTR 35.0%
ACGTTTGAAGGAGTTGAATT+TGG + chr2_4:49203884-49203903 None:intergenic 35.0%
TACAAAACGACTACGTTTGA+AGG + chr2_4:49203896-49203915 None:intergenic 35.0%
! TCTTTGAAGATATGAATCGG+AGG + chr2_4:49203935-49203954 None:intergenic 35.0%
!!! ATTGTTTTTTTCTTCACCGG+CGG - chr2_4:49204004-49204023 Msa0332300:three_prime_UTR 35.0%
AAAGCTCTTTGTAATGAAGC+TGG - chr2_4:49204203-49204222 Msa0332300:three_prime_UTR 35.0%
GATTCTCCAAATCAAAAGGA+CGG - chr2_4:49204522-49204541 Msa0332300:CDS 35.0%
!! CTTTTTCCGTCCTTTTGATT+TGG + chr2_4:49204531-49204550 None:intergenic 35.0%
! ACAATTTCGATCAGAAGTGT+AGG + chr2_4:49204573-49204592 None:intergenic 35.0%
!!! GCTGCGTTTAATGTTACTTT+TGG - chr2_4:49204733-49204752 Msa0332300:CDS 35.0%
! TTTCTTTATTTAGGACTCGC+CGG - chr2_4:49204818-49204837 Msa0332300:CDS 35.0%
AGCACTAAAGATTCTCTCTA+TGG - chr2_4:49204902-49204921 Msa0332300:CDS 35.0%
! GATCCGTGAGAAATATTTTG+AGG - chr2_4:49204955-49204974 Msa0332300:CDS 35.0%
!! TCCGTGAGAAATATTTTGAG+GGG - chr2_4:49204957-49204976 Msa0332300:CDS 35.0%
!! ACTTTTGAGGGCAATGAAAT+GGG - chr2_4:49205029-49205048 Msa0332300:CDS 35.0%
!!! AAGGGTAGTTTTGGTAGTTT+AGG - chr2_4:49205093-49205112 Msa0332300:CDS 35.0%
! TTGCTGAGCTTATTGCTATT+TGG - chr2_4:49205137-49205156 Msa0332300:intron 35.0%
AAGAAATATCACGGGAAGTA+AGG + chr2_4:49205216-49205235 None:intergenic 35.0%
!!! CTTCTTTTTTTAGGAGGTTG+CGG - chr2_4:49205233-49205252 Msa0332300:intron 35.0%
GATCTATAAACTGGAAAGAG+TGG - chr2_4:49205333-49205352 Msa0332300:intron 35.0%
CTATTGAGGACAAACAAAAC+TGG + chr2_4:49205386-49205405 None:intergenic 35.0%
!!! CAGTTTTGTTTGTCCTCAAT+AGG - chr2_4:49205384-49205403 Msa0332300:intron 35.0%
GTTGAGTACGTGTGTTTAAA+GGG - chr2_4:49205497-49205516 Msa0332300:intron 35.0%
TTGAGTACGTGTGTTTAAAG+GGG - chr2_4:49205498-49205517 Msa0332300:intron 35.0%
CTCTGTGAATTAAAAGTGAC+AGG - chr2_4:49205534-49205553 Msa0332300:intron 35.0%
CCAAAGTGGGTCAATTAAAT+TGG + chr2_4:49205743-49205762 None:intergenic 35.0%
CCAATTTAATTGACCCACTT+TGG - chr2_4:49205740-49205759 Msa0332300:intron 35.0%
TCTGTGTGAAAAACCAAAGT+GGG + chr2_4:49205756-49205775 None:intergenic 35.0%
ATCTGTGTGAAAAACCAAAG+TGG + chr2_4:49205757-49205776 None:intergenic 35.0%
AAAAATGGGTCAGTTATTCC+GGG - chr2_4:49205926-49205945 Msa0332300:intron 35.0%
!! AGGAGTATTAGTACAGTTTG+AGG - chr2_4:49206191-49206210 Msa0332300:intron 35.0%
! GGAGTATTAGTACAGTTTGA+GGG - chr2_4:49206192-49206211 Msa0332300:intron 35.0%
CACCAAAGACAAAAAGATGT+TGG - chr2_4:49206309-49206328 Msa0332300:intron 35.0%
! GACCAACATCTTTTTGTCTT+TGG + chr2_4:49206314-49206333 None:intergenic 35.0%
!! GATGAATAGTTTGGAGCTTT+TGG + chr2_4:49206495-49206514 None:intergenic 35.0%
GAACTCAATTCAGTGCTTTA+AGG + chr2_4:49206559-49206578 None:intergenic 35.0%
AATTGAGTTCACTGTTAACC+TGG - chr2_4:49206569-49206588 Msa0332300:intron 35.0%
! TAGATTTTTGCATCATAGCC+AGG + chr2_4:49206590-49206609 None:intergenic 35.0%
GACTGTATATACTGATCTAC+AGG - chr2_4:49206666-49206685 Msa0332300:intron 35.0%
! TTAGCAACTAATGGATCGAT+AGG + chr2_4:49206816-49206835 None:intergenic 35.0%
ACCATTAGGATTTACAGCAT+GGG + chr2_4:49207067-49207086 None:intergenic 35.0%
! TACTAATCCATTTGGCTTCA+GGG - chr2_4:49207416-49207435 Msa0332300:intron 35.0%
! TCTGAAATAGCTTCAGACAT+TGG + chr2_4:49207543-49207562 None:intergenic 35.0%
AAATGTTGTCACTACTTACC+TGG + chr2_4:49207679-49207698 None:intergenic 35.0%
ACCTGAATTCATATTGTTGC+AGG - chr2_4:49207789-49207808 Msa0332300:intron 35.0%
ACCTGCAACAATATGAATTC+AGG + chr2_4:49207793-49207812 None:intergenic 35.0%
CTGCATAAATGAATAGTCAG+TGG - chr2_4:49207849-49207868 Msa0332300:CDS 35.0%
AAAGTTAGAGGATGGAGTTA+AGG - chr2_4:49207912-49207931 Msa0332300:CDS 35.0%
TACAACTTTAGTTAGGTGTG+GGG - chr2_4:49208018-49208037 Msa0332300:exon 35.0%
GTTAAACCCTCAGATACTAT+TGG - chr2_4:49208074-49208093 Msa0332300:five_prime_UTR 35.0%
GATCTTTCCAATAGTATCTG+AGG + chr2_4:49208084-49208103 None:intergenic 35.0%
TGATTGGATCTAAGAACGTG+AGG + chr2_4:49203832-49203851 None:intergenic 40.0%
!! CGGGAGAATTTTGATCTGAT+TGG + chr2_4:49203848-49203867 None:intergenic 40.0%
AGGAGAGAGAGAATAACAAG+AGG - chr2_4:49204078-49204097 Msa0332300:three_prime_UTR 40.0%
AGAATAACAAGAGGAGAGAG+AGG - chr2_4:49204087-49204106 Msa0332300:three_prime_UTR 40.0%
! TTCTCCGGTTTGAGAATGTA+TGG - chr2_4:49204137-49204156 Msa0332300:three_prime_UTR 40.0%
! TCTCCGGTTTGAGAATGTAT+GGG - chr2_4:49204138-49204157 Msa0332300:three_prime_UTR 40.0%
GTTCCCATACATTCTCAAAC+CGG + chr2_4:49204144-49204163 None:intergenic 40.0%
CTCTTTGTAATGAAGCTGGT+TGG - chr2_4:49204207-49204226 Msa0332300:three_prime_UTR 40.0%
TTACGATACGTTGTACCATC+AGG + chr2_4:49204242-49204261 None:intergenic 40.0%
TGATGGTACAACGTATCGTA+AGG - chr2_4:49204241-49204260 Msa0332300:three_prime_UTR 40.0%
AGTGTCATGTGCTATATTGC+TGG + chr2_4:49204477-49204496 None:intergenic 40.0%
GCCCCTCAAAATATTTCTCA+CGG + chr2_4:49204961-49204980 None:intergenic 40.0%
!! GACTTTTGAGGGCAATGAAA+TGG - chr2_4:49205028-49205047 Msa0332300:CDS 40.0%
GGTAGTTTAGGTGTGTGATT+TGG - chr2_4:49205105-49205124 Msa0332300:CDS 40.0%
! TATTTGGCAGAAGCTTTTGC+AGG - chr2_4:49205153-49205172 Msa0332300:intron 40.0%
CATTGCATGGTACTCTGATT+TGG - chr2_4:49205176-49205195 Msa0332300:intron 40.0%
AACCAAGGAAAGTCCTATTG+AGG + chr2_4:49205400-49205419 None:intergenic 40.0%
TCAATAGGACTTTCCTTGGT+TGG - chr2_4:49205399-49205418 Msa0332300:intron 40.0%
CAATAGGACTTTCCTTGGTT+GGG - chr2_4:49205400-49205419 Msa0332300:intron 40.0%
AAAGGAAAGAAACCCAACCA+AGG + chr2_4:49205415-49205434 None:intergenic 40.0%
GGTTGAGTACGTGTGTTTAA+AGG - chr2_4:49205496-49205515 Msa0332300:intron 40.0%
! CTGGCCTAATAAGTTTTGCT+TGG + chr2_4:49205625-49205644 None:intergenic 40.0%
GTGGGTCAATTAAATTGGGA+CGG + chr2_4:49205738-49205757 None:intergenic 40.0%
ACTCCTACAAATGTCAGAGT+GGG + chr2_4:49206163-49206182 None:intergenic 40.0%
TACTCCTACAAATGTCAGAG+TGG + chr2_4:49206164-49206183 None:intergenic 40.0%
ACTCTGACATTTGTAGGAGT+AGG - chr2_4:49206163-49206182 Msa0332300:intron 40.0%
ATTTGTAGGAGTAGGACTGT+AGG - chr2_4:49206171-49206190 Msa0332300:intron 40.0%
CAATGGTAGAATTTAAGGGC+TGG - chr2_4:49206416-49206435 Msa0332300:intron 40.0%
!! CAGTGCTTTAAGGCTTGTTT+GGG + chr2_4:49206549-49206568 None:intergenic 40.0%
!! TCAGTGCTTTAAGGCTTGTT+TGG + chr2_4:49206550-49206569 None:intergenic 40.0%
ACATTCTTGCCCGCTTATAA+AGG - chr2_4:49206613-49206632 Msa0332300:intron 40.0%
TGACATGGTAAGATGAACAC+GGG + chr2_4:49206984-49207003 None:intergenic 40.0%
CTGACATGGTAAGATGAACA+CGG + chr2_4:49206985-49207004 None:intergenic 40.0%
TCCCATGCTGTAAATCCTAA+TGG - chr2_4:49207063-49207082 Msa0332300:intron 40.0%
CACCATTAGGATTTACAGCA+TGG + chr2_4:49207068-49207087 None:intergenic 40.0%
GCTGTAAATCCTAATGGTGA+TGG - chr2_4:49207069-49207088 Msa0332300:intron 40.0%
AGGGAATTTCCATCACCATT+AGG + chr2_4:49207081-49207100 None:intergenic 40.0%
ATGGAAATTCCCTCATTCCA+TGG - chr2_4:49207088-49207107 Msa0332300:intron 40.0%
!! GTTTTTGAGCCATGGAATGA+GGG + chr2_4:49207100-49207119 None:intergenic 40.0%
AATATATAGCTGCGGAAGCT+TGG + chr2_4:49207154-49207173 None:intergenic 40.0%
CCAGTGTGAATATATAGCTG+CGG + chr2_4:49207162-49207181 None:intergenic 40.0%
!! CAAATGGATTAGTAGCGACT+AGG + chr2_4:49207410-49207429 None:intergenic 40.0%
CTAGTCGCTACTAATCCATT+TGG - chr2_4:49207408-49207427 Msa0332300:intron 40.0%
! CTACTAATCCATTTGGCTTC+AGG - chr2_4:49207415-49207434 Msa0332300:intron 40.0%
CATCTGATCCAGAATCTTCA+TGG + chr2_4:49207626-49207645 None:intergenic 40.0%
! GATGATTTAGAGCTCACTCT+TGG - chr2_4:49207642-49207661 Msa0332300:intron 40.0%
!! ATACCTGTAATGGATTGGGT+TGG - chr2_4:49208107-49208126 Msa0332300:five_prime_UTR 40.0%
ATACCAACCCAATCCATTAC+AGG + chr2_4:49208113-49208132 None:intergenic 40.0%
AAATGTACCTGCATGACCAA+AGG - chr2_4:49208165-49208184 Msa0332300:five_prime_UTR 40.0%
! CAATTCTCCGACGAGTTTTC+CGG - chr2_4:49203768-49203787 Msa0332300:three_prime_UTR 45.0%
ATGTTGACCGGAAAACTCGT+CGG + chr2_4:49203778-49203797 None:intergenic 45.0%
ACTTCGCCGGAGTTAGTTAA+CGG + chr2_4:49203804-49203823 None:intergenic 45.0%
TTGGATCTAAGAACGTGAGG+TGG + chr2_4:49203829-49203848 None:intergenic 45.0%
! TTTTTCCGGCTAGATGACGT+CGG - chr2_4:49204034-49204053 Msa0332300:three_prime_UTR 45.0%
ATAGCAGCGAAGATCTTCTC+CGG - chr2_4:49204122-49204141 Msa0332300:three_prime_UTR 45.0%
TGTAGGTGCTAAAGAGCTCT+CGG + chr2_4:49204556-49204575 None:intergenic 45.0%
TCTGTCTCCACTGATACACT+CGG + chr2_4:49204705-49204724 None:intergenic 45.0%
GCTTCACGCTTAAAAGCGAA+AGG + chr2_4:49204885-49204904 None:intergenic 45.0%
!! AAGCTTTTGCAGGCATTGCA+TGG - chr2_4:49205163-49205182 Msa0332300:intron 45.0%
GTCCTCAATAGGACTTTCCT+TGG - chr2_4:49205395-49205414 Msa0332300:intron 45.0%
GGTCAATTAAATTGGGACGG+AGG + chr2_4:49205735-49205754 None:intergenic 45.0%
TTCCCCACTCTGACATTTGT+AGG - chr2_4:49206157-49206176 Msa0332300:intron 45.0%
CTCCTACAAATGTCAGAGTG+GGG + chr2_4:49206162-49206181 None:intergenic 45.0%
! TTAAGGCTTGTTTGGGAGGA+CGG + chr2_4:49206542-49206561 None:intergenic 45.0%
!! TGCTTTAAGGCTTGTTTGGG+AGG + chr2_4:49206546-49206565 None:intergenic 45.0%
! TGTGATAGGTGGTTCTGCAA+TGG - chr2_4:49206954-49206973 Msa0332300:intron 45.0%
! GTGATAGGTGGTTCTGCAAT+GGG - chr2_4:49206955-49206974 Msa0332300:intron 45.0%
!! GGTTTTTGAGCCATGGAATG+AGG + chr2_4:49207101-49207120 None:intergenic 45.0%
!! GATGAGAGGTTTTTGAGCCA+TGG + chr2_4:49207108-49207127 None:intergenic 45.0%
TGGCTCAAAAACCTCTCATC+TGG - chr2_4:49207108-49207127 Msa0332300:intron 45.0%
! CTGATGATGATCCAGATGAG+AGG + chr2_4:49207122-49207141 None:intergenic 45.0%
CCGCAGCTATATATTCACAC+TGG - chr2_4:49207159-49207178 Msa0332300:intron 45.0%
ACCAATCTGGGTCAAGAACT+TGG + chr2_4:49207338-49207357 None:intergenic 45.0%
!! TTGACCCAGATTGGTTTGCT+GGG - chr2_4:49207343-49207362 Msa0332300:intron 45.0%
TGATCCCAGCAAACCAATCT+GGG + chr2_4:49207350-49207369 None:intergenic 45.0%
ATTAGTAGCGACTAGGCTGA+AGG + chr2_4:49207403-49207422 None:intergenic 45.0%
! TTCAGGGAAGAGGTTTTCTG+TGG - chr2_4:49207432-49207451 Msa0332300:intron 45.0%
AACATGTCCCACTTTGTCCA+GGG + chr2_4:49207479-49207498 None:intergenic 45.0%
!! AGTTGGTTTGGTGAAGCCTT+GGG - chr2_4:49207587-49207606 Msa0332300:intron 45.0%
GAGAGGATCCATGAAGATTC+TGG - chr2_4:49207615-49207634 Msa0332300:intron 45.0%
! CACTACTTACCTGGTCTTTG+AGG + chr2_4:49207670-49207689 None:intergenic 45.0%
TGAACTTCCTTTGGTCATGC+AGG + chr2_4:49208175-49208194 None:intergenic 45.0%
!! AATAAAAGAATAAAATAAAA+TGG + chr2_4:49207962-49207981 None:intergenic 5.0%
CCGGAAAAAATTCTCACCGC+CGG + chr2_4:49204023-49204042 None:intergenic 50.0%
!!! CCGGCGGTGAGAATTTTTTC+CGG - chr2_4:49204020-49204039 Msa0332300:three_prime_UTR 50.0%
! TTTTCCGGCTAGATGACGTC+GGG - chr2_4:49204035-49204054 Msa0332300:three_prime_UTR 50.0%
TTCTCTCTCTCCTTCCACGT+TGG + chr2_4:49204071-49204090 None:intergenic 50.0%
! TTGGTGTCCGAGTGTATCAG+TGG - chr2_4:49204695-49204714 Msa0332300:CDS 50.0%
CGACCAGATCTAACGTACAC+CGG + chr2_4:49204840-49204859 None:intergenic 50.0%
CGGTGTACGTTAGATCTGGT+CGG - chr2_4:49204838-49204857 Msa0332300:CDS 50.0%
GGTGTACGTTAGATCTGGTC+GGG - chr2_4:49204839-49204858 Msa0332300:CDS 50.0%
GTGTACGTTAGATCTGGTCG+GGG - chr2_4:49204840-49204859 Msa0332300:CDS 50.0%
! TTTGAGGGGCATAGATCTCG+AGG - chr2_4:49204971-49204990 Msa0332300:CDS 50.0%
! TTGAGGGGCATAGATCTCGA+GGG - chr2_4:49204972-49204991 Msa0332300:CDS 50.0%
GCATAGATCTCGAGGGTGAA+AGG - chr2_4:49204979-49204998 Msa0332300:CDS 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr2_4:49205930-49205949 Msa0332300:intron 50.0%
ATATGATACTCCCTCCGTCC+CGG + chr2_4:49205947-49205966 None:intergenic 50.0%
! CTTGTTTGGGAGGACGGTTT+TGG + chr2_4:49206536-49206555 None:intergenic 50.0%
TTTCAAGGGATGCAAGCCTG+CGG - chr2_4:49206921-49206940 Msa0332300:intron 50.0%
GAACGCATGGATGTGATAGG+TGG - chr2_4:49206943-49206962 Msa0332300:intron 50.0%
! CTTGGGTTGTAGGAAGCACA+GGG + chr2_4:49207009-49207028 None:intergenic 50.0%
! ACTTGGGTTGTAGGAAGCAC+AGG + chr2_4:49207010-49207029 None:intergenic 50.0%
AGGAAGAAGAGCCAGGACTT+GGG + chr2_4:49207026-49207045 None:intergenic 50.0%
AAGGAAGAAGAGCCAGGACT+TGG + chr2_4:49207027-49207046 None:intergenic 50.0%
TTTACAGCATGGGATGAGCG+CGG + chr2_4:49207057-49207076 None:intergenic 50.0%
AGGATCAGTCTACTCGTCCT+GGG - chr2_4:49207256-49207275 Msa0332300:intron 50.0%
GCCAAGTTCTTGACCCAGAT+TGG - chr2_4:49207334-49207353 Msa0332300:intron 50.0%
!! CTTGACCCAGATTGGTTTGC+TGG - chr2_4:49207342-49207361 Msa0332300:intron 50.0%
CTGATCCCAGCAAACCAATC+TGG + chr2_4:49207351-49207370 None:intergenic 50.0%
!! CAGATTGGTTTGCTGGGATC+AGG - chr2_4:49207349-49207368 Msa0332300:intron 50.0%
! TCCATTTGGCTTCAGGGAAG+AGG - chr2_4:49207422-49207441 Msa0332300:intron 50.0%
ACCTCTTCCCTGAAGCCAAA+TGG + chr2_4:49207426-49207445 None:intergenic 50.0%
ACATGTCCCACTTTGTCCAG+GGG + chr2_4:49207478-49207497 None:intergenic 50.0%
GAACATGTCCCACTTTGTCC+AGG + chr2_4:49207480-49207499 None:intergenic 50.0%
! TGTTCTCCAGCTTTAGCTGC+AGG - chr2_4:49207495-49207514 Msa0332300:intron 50.0%
ACCAACTGCACTGCTTCCAA+AGG + chr2_4:49207574-49207593 None:intergenic 50.0%
TGGAAGCAGTGCAGTTGGTT+TGG - chr2_4:49207575-49207594 Msa0332300:intron 50.0%
!! CAGTTGGTTTGGTGAAGCCT+TGG - chr2_4:49207586-49207605 Msa0332300:intron 50.0%
CTCTTGGTACCTCAAAGACC+AGG - chr2_4:49207658-49207677 Msa0332300:intron 50.0%
ACGTGAGGTGGTTACTTCGC+CGG + chr2_4:49203817-49203836 None:intergenic 55.0%
TTTCCGGCTAGATGACGTCG+GGG - chr2_4:49204036-49204055 Msa0332300:three_prime_UTR 55.0%
GGTTGGATCGTTGAGCCTGA+TGG - chr2_4:49204224-49204243 Msa0332300:three_prime_UTR 55.0%
TCGCCGGTGTACGTTAGATC+TGG - chr2_4:49204834-49204853 Msa0332300:CDS 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr2_4:49205934-49205953 Msa0332300:intron 55.0%
ATCACATCCATGCGTTCCGC+AGG + chr2_4:49206940-49206959 None:intergenic 55.0%
GCGGAACGCATGGATGTGAT+AGG - chr2_4:49206940-49206959 Msa0332300:intron 55.0%
! AGGAAGCACAGGGACTGACA+TGG + chr2_4:49206999-49207018 None:intergenic 55.0%
GCTTCCTACAACCCAAGTCC+TGG - chr2_4:49207012-49207031 Msa0332300:intron 55.0%
! AGAGCCAGGACTTGGGTTGT+AGG + chr2_4:49207019-49207038 None:intergenic 55.0%
CTAGGGAAGGAAGAAGAGCC+AGG + chr2_4:49207033-49207052 None:intergenic 55.0%
TTACAGCATGGGATGAGCGC+GGG + chr2_4:49207056-49207075 None:intergenic 55.0%
TAGCTGCGGAAGCTTGGAAG+AGG + chr2_4:49207148-49207167 None:intergenic 55.0%
!! AGGAGTGACAGGAGCACTGA+TGG + chr2_4:49207187-49207206 None:intergenic 55.0%
GAGCTAAGTGGAGGAGTGAC+AGG + chr2_4:49207198-49207217 None:intergenic 55.0%
GCAGTTGGAGAGCTAAGTGG+AGG + chr2_4:49207207-49207226 None:intergenic 55.0%
CGAGCAGTTGGAGAGCTAAG+TGG + chr2_4:49207210-49207229 None:intergenic 55.0%
ACCCCAGAGGAAAGCTGACT+GGG - chr2_4:49207233-49207252 Msa0332300:intron 55.0%
TCCCAGTCAGCTTTCCTCTG+GGG + chr2_4:49207237-49207256 None:intergenic 55.0%
CTCCCAGTCAGCTTTCCTCT+GGG + chr2_4:49207238-49207257 None:intergenic 55.0%
GAGGATCAGTCTACTCGTCC+TGG - chr2_4:49207255-49207274 Msa0332300:intron 55.0%
ATCAGTCTACTCGTCCTGGG+TGG - chr2_4:49207259-49207278 Msa0332300:intron 55.0%
TCAGTCTACTCGTCCTGGGT+GGG - chr2_4:49207260-49207279 Msa0332300:intron 55.0%
GGTCAAGAACTTGGCGACCA+GGG + chr2_4:49207329-49207348 None:intergenic 55.0%
AGGAGAAGTTTGCCCGCTGT+GGG + chr2_4:49207379-49207398 None:intergenic 55.0%
TAGGAGAAGTTTGCCCGCTG+TGG + chr2_4:49207380-49207399 None:intergenic 55.0%
GTAGCGACTAGGCTGAAGGT+AGG + chr2_4:49207399-49207418 None:intergenic 55.0%
TTTGTCCAGGGGTCCACATG+CGG + chr2_4:49207467-49207486 None:intergenic 55.0%
ATGTGGACCCCTGGACAAAG+TGG - chr2_4:49207468-49207487 Msa0332300:intron 55.0%
TGTGGACCCCTGGACAAAGT+GGG - chr2_4:49207469-49207488 Msa0332300:intron 55.0%
TCAGAGCCTGCAGCTAAAGC+TGG + chr2_4:49207504-49207523 None:intergenic 55.0%
! GCCTTTGGAAGCAGTGCAGT+TGG - chr2_4:49207570-49207589 Msa0332300:intron 55.0%
!! GGTTTGGTGAAGCCTTGGGA+AGG - chr2_4:49207591-49207610 Msa0332300:intron 55.0%
TGAAGCCTTGGGAAGGAGAG+AGG - chr2_4:49207598-49207617 Msa0332300:intron 55.0%
TGGATCCTCTCTCCTTCCCA+AGG + chr2_4:49207606-49207625 None:intergenic 55.0%
GACGAGGCAACCAACGTGGA+AGG - chr2_4:49204058-49204077 Msa0332300:three_prime_UTR 60.0%
TCTGGTCGGGGTAGTGTCTG+AGG - chr2_4:49204852-49204871 Msa0332300:CDS 60.0%
GGTCAGTTATTCCGGGACGG+AGG - chr2_4:49205933-49205952 Msa0332300:intron 60.0%
ATGCAAGCCTGCGGAACGCA+TGG - chr2_4:49206930-49206949 Msa0332300:intron 60.0%
!! CTCTGGGGTGATCGAGCAGT+TGG + chr2_4:49207222-49207241 None:intergenic 60.0%
CAACTGCTCGATCACCCCAG+AGG - chr2_4:49207220-49207239 Msa0332300:intron 60.0%
CACCCCAGAGGAAAGCTGAC+TGG - chr2_4:49207232-49207251 Msa0332300:intron 60.0%
CCTCCCAGTCAGCTTTCCTC+TGG + chr2_4:49207239-49207258 None:intergenic 60.0%
CCAGAGGAAAGCTGACTGGG+AGG - chr2_4:49207236-49207255 Msa0332300:intron 60.0%
CAGTCTACTCGTCCTGGGTG+GGG - chr2_4:49207261-49207280 Msa0332300:intron 60.0%
TAGGAGGAGTGGAGGAAGGC+TGG + chr2_4:49207305-49207324 None:intergenic 60.0%
AGAACTTGGCGACCAGGGCT+AGG + chr2_4:49207324-49207343 None:intergenic 60.0%
GGGTCAAGAACTTGGCGACC+AGG + chr2_4:49207330-49207349 None:intergenic 60.0%
GGAGAAGTTTGCCCGCTGTG+GGG + chr2_4:49207378-49207397 None:intergenic 60.0%
GTGGCAGTGATTCCCGCATG+TGG - chr2_4:49207451-49207470 Msa0332300:intron 60.0%
TTGTCCAGGGGTCCACATGC+GGG + chr2_4:49207466-49207485 None:intergenic 60.0%
CGTCCCCGACGTCATCTAGC+CGG + chr2_4:49204042-49204061 None:intergenic 65.0%
GCTAGATGACGTCGGGGACG+AGG - chr2_4:49204042-49204061 Msa0332300:three_prime_UTR 65.0%
! CATGGGATGAGCGCGGGCTA+GGG + chr2_4:49207050-49207069 None:intergenic 65.0%
TCTACTCGTCCTGGGTGGGG+TGG - chr2_4:49207264-49207283 Msa0332300:intron 65.0%
CTACTCGTCCTGGGTGGGGT+GGG - chr2_4:49207265-49207284 Msa0332300:intron 65.0%
GGGCTAGGAGGAGTGGAGGA+AGG + chr2_4:49207309-49207328 None:intergenic 65.0%
TCCTCCACTCCTCCTAGCCC+TGG - chr2_4:49207309-49207328 Msa0332300:intron 65.0%
ACCAGGGCTAGGAGGAGTGG+AGG + chr2_4:49207313-49207332 None:intergenic 65.0%
ACTTGGCGACCAGGGCTAGG+AGG + chr2_4:49207321-49207340 None:intergenic 65.0%
GGGATCAGGATGCCCCACAG+CGG - chr2_4:49207363-49207382 Msa0332300:intron 65.0%
GGATCAGGATGCCCCACAGC+GGG - chr2_4:49207364-49207383 Msa0332300:intron 65.0%
GATTCCCGCATGTGGACCCC+TGG - chr2_4:49207459-49207478 Msa0332300:intron 65.0%
CGGGGACGAGGCAACCAACG+TGG - chr2_4:49204054-49204073 Msa0332300:three_prime_UTR 70.0%
!! GGATGAGCGCGGGCTAGGGA+AGG + chr2_4:49207046-49207065 None:intergenic 70.0%
GCATGGGATGAGCGCGGGCT+AGG + chr2_4:49207051-49207070 None:intergenic 70.0%
TACTGCTGCCCACCCCACCC+AGG + chr2_4:49207276-49207295 None:intergenic 70.0%
GCGACCAGGGCTAGGAGGAG+TGG + chr2_4:49207316-49207335 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 49203738 49208340 49203738 ID=Msa0332300;Name=Msa0332300
chr2_4 mRNA 49203738 49208340 49203738 ID=Msa0332300-mRNA-1;Parent=Msa0332300;Name=Msa0332300-mRNA-1;_AED=0.25;_eAED=0.25;_QI=309|1|1|1|1|1|3|526|323
chr2_4 exon 49203738 49204267 49203738 ID=Msa0332300-mRNA-1:exon:14757;Parent=Msa0332300-mRNA-1
chr2_4 exon 49204399 49205150 49204399 ID=Msa0332300-mRNA-1:exon:14756;Parent=Msa0332300-mRNA-1
chr2_4 exon 49207816 49208340 49207816 ID=Msa0332300-mRNA-1:exon:14755;Parent=Msa0332300-mRNA-1
chr2_4 five_prime_UTR 49208032 49208340 49208032 ID=Msa0332300-mRNA-1:five_prime_utr;Parent=Msa0332300-mRNA-1
chr2_4 CDS 49207816 49208031 49207816 ID=Msa0332300-mRNA-1:cds;Parent=Msa0332300-mRNA-1
chr2_4 CDS 49204399 49205150 49204399 ID=Msa0332300-mRNA-1:cds;Parent=Msa0332300-mRNA-1
chr2_4 CDS 49204264 49204267 49204264 ID=Msa0332300-mRNA-1:cds;Parent=Msa0332300-mRNA-1
chr2_4 three_prime_UTR 49203738 49204263 49203738 ID=Msa0332300-mRNA-1:three_prime_utr;Parent=Msa0332300-mRNA-1
Gene Sequence

>Msa0332300

ATGACGTCGGGGACGAGGCAACCAACGTGGAAGGAGAGAGAGAATAACAAGAGGAGAGAGAGGAGAAGAAGAGCGATAGCAGCGAAGATCTTCTCCGGTTTGAGAATGTATGGGAACTATAAGCTTCCGAAACATTGCGATAACAATGAAGTTCTCAAAGCTCTTTGTAATGAAGCTGGTTGGATCGTTGAGCCTGATGGTACAACGTATCGTAAGGGATGCAAGCCTGCGGAACGCATGGATGTGATAGGTGGTTCTGCAATGGGAAGCCCGTGTTCATCTTACCATGTCAGTCCCTGTGCTTCCTACAACCCAAGTCCTGGCTCTTCTTCCTTCCCTAGCCCGCGCTCATCCCATGCTGTAAATCCTAATGGTGATGGAAATTCCCTCATTCCATGGCTCAAAAACCTCTCATCTGGATCATCATCAGCATCCTCTTCCAAGCTTCCGCAGCTATATATTCACACTGGCTCCATCAGTGCTCCTGTCACTCCTCCACTTAGCTCTCCAACTGCTCGATCACCCCAGAGGAAAGCTGACTGGGAGGATCAGTCTACTCGTCCTGGGTGGGGTGGGCAGCAGTACTCTTTCCAGCCTTCCTCCACTCCTCCTAGCCCTGGTCGCCAAGTTCTTGACCCAGATTGGTTTGCTGGGATCAGGATGCCCCACAGCGGGCAAACTTCTCCTACCTTCAGCCTAGTCGCTACTAATCCATTTGGCTTCAGGGAAGAGGTTTTCTGTGGCAGTGATTCCCGCATGTGGACCCCTGGACAAAGTGGGACATGTTCTCCAGCTTTAGCTGCAGGCTCTGATCATAATGCTGACATACCAATGTCTGAAGCTATTTCAGATGAATTTGCCTTTGGAAGCAGTGCAGTTGGTTTGGTGAAGCCTTGGGAAGGAGAGAGGATCCATGAAGATTCTGGATCAGATGATTTAGAGCTCACTCTTGGTACCTCAAAGACCAGGTAA
Protein sequence

>Msa0332300

MTSGTRQPTWKERENNKRRERRRRAIAAKIFSGLRMYGNYKLPKHCDNNEVLKALCNEAGWIVEPDGTTYRKGCKPAERMDVIGGSAMGSPCSSYHVSPCASYNPSPGSSSFPSPRSSHAVNPNGDGNSLIPWLKNLSSGSSSASSSKLPQLYIHTGSISAPVTPPLSSPTARSPQRKADWEDQSTRPGWGGQQYSFQPSSTPPSPGRQVLDPDWFAGIRMPHSGQTSPTFSLVATNPFGFREEVFCGSDSRMWTPGQSGTCSPALAAGSDHNADIPMSEAISDEFAFGSSAVGLVKPWEGERIHEDSGSDDLELTLGTSKTR*