AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0293860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0293860 MtrunA17_Chr2g0315211 99.381 323 2 0 1 323 1 323 0.0 659
Msa0293860 MtrunA17_Chr2g0315201 74.303 323 76 1 1 323 1 316 9.57e-150 423
Msa0293860 MtrunA17_Chr1g0154651 38.629 321 108 11 6 323 14 248 1.90e-42 147
Msa0293860 MtrunA17_Chr3g0141401 41.742 333 148 14 3 321 12 312 3.48e-36 132
Msa0293860 MtrunA17_Chr5g0403631 43.860 342 138 10 6 321 9 322 9.22e-33 123
Msa0293860 MtrunA17_Chr5g0408851 40.870 115 65 2 17 131 61 172 2.59e-16 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0293860 AT1G78700.1 69.760 334 81 8 1 323 1 325 5.52e-132 379
Msa0293860 AT4G18890.1 61.585 328 77 9 1 323 1 284 2.89e-103 304
Msa0293860 AT4G18890.2 52.988 251 69 9 78 323 2 208 1.50e-63 200
Msa0293860 AT1G75080.2 40.385 364 120 14 6 323 23 335 1.22e-46 160
Msa0293860 AT1G75080.1 40.385 364 120 14 6 323 23 335 1.22e-46 160
Msa0293860 AT1G19350.3 41.160 362 116 15 6 321 44 354 7.79e-45 157
Msa0293860 AT1G19350.5 40.884 362 117 15 6 321 22 332 8.72e-45 156
Msa0293860 AT1G19350.1 40.884 362 117 15 6 321 22 332 8.72e-45 156
Msa0293860 AT1G19350.6 40.884 362 117 15 6 321 22 332 8.72e-45 156
Msa0293860 AT1G19350.4 40.884 362 117 15 6 321 22 332 8.72e-45 156
Msa0293860 AT3G50750.1 42.331 326 105 10 6 318 14 269 2.43e-41 145
Msa0293860 AT4G36780.1 50.685 219 76 7 6 211 16 215 3.41e-33 124
Msa0293860 AT5G45300.2 48.235 85 41 1 17 101 97 178 4.59e-16 79.3
Msa0293860 AT5G45300.3 47.059 85 44 1 17 101 111 194 1.20e-15 78.2
Msa0293860 AT5G45300.1 47.059 85 44 1 17 101 97 180 1.22e-15 78.2
Msa0293860 AT2G45880.1 53.623 69 29 1 11 76 74 142 6.04e-15 75.9

Find 169 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATTCGGATTGAATTAT+AGG 0.190929 2_3:-45358719 Msa0293860:three_prime_UTR
CTTGACCCAGATTGGTTTGC+TGG 0.249683 2_3:-45359579 Msa0293860:CDS
CTACTAATCCATTTGGCTTC+AGG 0.251618 2_3:-45359506 Msa0293860:CDS
GCGTTTGAAGGAGCTGAATT+TGG 0.273487 2_3:+45362797 None:intergenic
AATAAAAGAATAAAATAAAA+TGG 0.287996 2_3:+45358962 None:intergenic
TTCATATTCAAAGTAAAATT+AGG 0.296697 2_3:-45358784 Msa0293860:three_prime_UTR
CCTCCCAGTCAGCTTTCCTC+TGG 0.324519 2_3:+45359685 None:intergenic
GAGAGGATCCATGAAGATTC+TGG 0.328306 2_3:-45359306 Msa0293860:CDS
CACTACTTACCTGGTCTTTG+AGG 0.341054 2_3:+45359254 None:intergenic
CTGATCCCAGCAAACCAATC+TGG 0.350204 2_3:+45359573 None:intergenic
AGAAAATTGGAAAAGATATA+TGG 0.355572 2_3:+45358692 None:intergenic
AAGCTCTTTGAAGATTTAAT+CGG 0.363881 2_3:+45362746 None:intergenic
AGGGAATTTCCATCACCATT+AGG 0.370323 2_3:+45359843 None:intergenic
CATCTGATCCAGAATCTTCA+TGG 0.372743 2_3:+45359298 None:intergenic
GCATGGGATGAGCGCGGGCT+AGG 0.380817 2_3:+45359873 None:intergenic
GTTAAACCCTCAGATACTAT+TGG 0.381335 2_3:-45358842 Msa0293860:three_prime_UTR
TTCTCCGGTTTGAGAATGTA+TGG 0.382953 2_3:-45362543 Msa0293860:CDS
CAGATTGGTTTGCTGGGATC+AGG 0.383352 2_3:-45359572 Msa0293860:CDS
TACTAATCCATTTGGCTTCA+GGG 0.383377 2_3:-45359505 Msa0293860:CDS
CTCCCAGTCAGCTTTCCTCT+GGG 0.391858 2_3:+45359686 None:intergenic
AATTTGCATTGAACTTCCTT+TGG 0.398308 2_3:+45358735 None:intergenic
AAGGAAGAAGAGCCAGGACT+TGG 0.403188 2_3:+45359897 None:intergenic
ATATTATGTAGAAAAGTTAG+AGG 0.408051 2_3:-45359021 Msa0293860:three_prime_UTR
TTATGTATACAACTTTAGTT+AGG 0.409089 2_3:-45358905 Msa0293860:three_prime_UTR
GAGGATCAGTCTACTCGTCC+TGG 0.410691 2_3:-45359666 Msa0293860:CDS
CTAGTCGCTACTAATCCATT+TGG 0.412992 2_3:-45359513 Msa0293860:CDS
AGAGCCAGGACTTGGGTTGT+AGG 0.415820 2_3:+45359905 None:intergenic
ATTTCAGATGAATTTGCCTT+TGG 0.420372 2_3:-45359366 Msa0293860:CDS
TCTACTCGTCCTGGGTGGGG+TGG 0.421075 2_3:-45359657 Msa0293860:CDS
AAGGAAGTTCAATGCAAATT+CGG 0.422861 2_3:-45358732 Msa0293860:three_prime_UTR
CTACTCGTCCTGGGTGGGGT+GGG 0.424088 2_3:-45359656 Msa0293860:CDS
TGGAAGCAGTGCAGTTGGTT+TGG 0.426703 2_3:-45359346 Msa0293860:CDS
AAAGTTAGAGGATGGAGTTA+AGG 0.427651 2_3:-45359009 Msa0293860:three_prime_UTR
TACAAAACGACTGCGTTTGA+AGG 0.431915 2_3:+45362785 None:intergenic
GAGCTAAGTGGAGGAGTGAC+AGG 0.433832 2_3:+45359726 None:intergenic
TCAATATACCTGTAATGGAT+TGG 0.434527 2_3:-45358814 Msa0293860:three_prime_UTR
AAAGATCAATATACCTGTAA+TGG 0.435716 2_3:-45358819 Msa0293860:three_prime_UTR
AGAATAACAAGAGGAGAGAG+AGG 0.437244 2_3:-45362593 Msa0293860:CDS
ATACCAACCCAATCCATTAC+AGG 0.437562 2_3:+45358806 None:intergenic
AATATATAGCTGGGGAAGCT+TGG 0.443626 2_3:+45359770 None:intergenic
TTGACCCAGATTGGTTTGCT+GGG 0.448546 2_3:-45359578 Msa0293860:CDS
ACCAATCTGGGTCAAGAACT+TGG 0.450542 2_3:+45359586 None:intergenic
CAATATACCTGTAATGGATT+GGG 0.451636 2_3:-45358813 Msa0293860:three_prime_UTR
ACCTCTTCCCTGAAGCCAAA+TGG 0.452419 2_3:+45359498 None:intergenic
AGACTCAAATTTCATATTGA+GGG 0.452575 2_3:+45359047 None:intergenic
TCCCATGCTGTAAATCCTAA+TGG 0.453038 2_3:-45359858 Msa0293860:CDS
GCCAAGTTCTTGACCCAGAT+TGG 0.457814 2_3:-45359587 Msa0293860:CDS
TAGGAGGAGTGGAGGAAGGC+TGG 0.458194 2_3:+45359619 None:intergenic
ATTTGGAAGAAATTGAAAAC+AGG 0.458274 2_3:+45362814 None:intergenic
TGTTCTCCAGCTTTAGCTGC+AGG 0.458482 2_3:-45359426 Msa0293860:CDS
TCCTCCACTCCTCCTAGCCC+TGG 0.459964 2_3:-45359612 Msa0293860:CDS
TGAACTTCCTTTGGTCATGC+AGG 0.467251 2_3:+45358744 None:intergenic
TCATTGTTATCGCAATGTTT+CGG 0.469180 2_3:+45362507 None:intergenic
GAACATGTCCCACTTTGTCC+AGG 0.469503 2_3:+45359444 None:intergenic
GGGTCAAGAACTTGGCGACC+AGG 0.476781 2_3:+45359594 None:intergenic
CAGACTCAAATTTCATATTG+AGG 0.479861 2_3:+45359046 None:intergenic
AGCCAGTGTGAATATATAGC+TGG 0.480859 2_3:+45359760 None:intergenic
TCCATTTGGCTTCAGGGAAG+AGG 0.483652 2_3:-45359499 Msa0293860:CDS
CTCTGGGGTGATCGAGCAGT+TGG 0.483752 2_3:+45359702 None:intergenic
TATGTAGAAAAGTTAGAGGA+TGG 0.484664 2_3:-45359017 Msa0293860:three_prime_UTR
AGAACTTGGCGACCAGGGCT+AGG 0.484854 2_3:+45359600 None:intergenic
AGTTGGTTTGGTGAAGCCTT+GGG 0.485013 2_3:-45359334 Msa0293860:CDS
GGATCAGGATGCCCCACAGC+GGG 0.486389 2_3:-45359557 Msa0293860:CDS
GCCTTTGGAAGCAGTGCAGT+TGG 0.487429 2_3:-45359351 Msa0293860:CDS
CACCCCAGAGGAAAGCTGAC+TGG 0.487819 2_3:-45359689 Msa0293860:CDS
GCGGAACGCATGGATGTGAT+AGG 0.488603 2_3:-45359981 Msa0293860:CDS
AGGAGAAGTTTGCCCGCTGT+GGG 0.488942 2_3:+45359545 None:intergenic
CATGGGATGAGCGCGGGCTA+GGG 0.493897 2_3:+45359874 None:intergenic
ACTTCGCCGGAGTTAGTTAA+CGG 0.497778 2_3:+45362877 None:intergenic
TCAGAGCCTGCAGCTAAAGC+TGG 0.499118 2_3:+45359420 None:intergenic
GATTCCCGCATGTGGACCCC+TGG 0.499359 2_3:-45359462 Msa0293860:CDS
ATGCAAGCCTGCGGAACGCA+TGG 0.500040 2_3:-45359991 Msa0293860:CDS
AAAGCTCTTTGTAATGAAGC+TGG 0.501704 2_3:-45362477 Msa0293860:CDS
CTCTTTGTAATGAAGCTGGT+TGG 0.502741 2_3:-45362473 Msa0293860:CDS
ACTTGGGTTGTAGGAAGCAC+AGG 0.505215 2_3:+45359914 None:intergenic
GCTTCCTACAACCCAAGTCC+TGG 0.505291 2_3:-45359909 Msa0293860:CDS
GATGATTTAGAGCTCACTCT+TGG 0.505956 2_3:-45359279 Msa0293860:CDS
TGGATCCTCTCTCCTTCCCA+AGG 0.506658 2_3:+45359318 None:intergenic
CAGTTGGTTTGGTGAAGCCT+TGG 0.507522 2_3:-45359335 Msa0293860:CDS
TCAGTCTACTCGTCCTGGGT+GGG 0.507843 2_3:-45359661 Msa0293860:CDS
GCGACCAGGGCTAGGAGGAG+TGG 0.508618 2_3:+45359608 None:intergenic
TTACGATACGTTGTACCATC+AGG 0.508951 2_3:+45362441 None:intergenic
GGATGAGCGCGGGCTAGGGA+AGG 0.515742 2_3:+45359878 None:intergenic
GTTCCCATACATTCTCAAAC+CGG 0.515743 2_3:+45362539 None:intergenic
ACCCCAGAGGAAAGCTGACT+GGG 0.516090 2_3:-45359688 Msa0293860:CDS
GATCTTTCCAATAGTATCTG+AGG 0.516108 2_3:+45358835 None:intergenic
GCGAGATGACGTCGGGGACG+AGG 0.516345 2_3:-45362638 Msa0293860:exon
CAGTCTACTCGTCCTGGGTG+GGG 0.517746 2_3:-45359660 Msa0293860:CDS
CTAGGGAAGGAAGAAGAGCC+AGG 0.519399 2_3:+45359891 None:intergenic
ATCACATCCATGCGTTCCGC+AGG 0.519528 2_3:+45359984 None:intergenic
AGGAGTGACAGGAGCACTGA+TGG 0.525130 2_3:+45359737 None:intergenic
TGATCCCAGCAAACCAATCT+GGG 0.525877 2_3:+45359574 None:intergenic
CACCATTAGGATTTACAGCA+TGG 0.525920 2_3:+45359856 None:intergenic
GTGATAGGTGGTTCTGCAAT+GGG 0.525969 2_3:-45359966 Msa0293860:CDS
TCTGAAATAGCTTCAGACAT+TGG 0.527497 2_3:+45359381 None:intergenic
GCCAGTGTGAATATATAGCT+GGG 0.527684 2_3:+45359761 None:intergenic
ACATGATTGACCAAAATGAA+AGG 0.530698 2_3:+45358863 None:intergenic
TATACAACTTTAGTTAGGTG+TGG 0.535701 2_3:-45358900 Msa0293860:three_prime_UTR
TTGTCCAGGGGTCCACATGC+GGG 0.536824 2_3:+45359458 None:intergenic
CATGATTGACCAAAATGAAA+GGG 0.537335 2_3:+45358864 None:intergenic
ATCTTTCCAATAGTATCTGA+GGG 0.539699 2_3:+45358836 None:intergenic
ATACAACTTTAGTTAGGTGT+GGG 0.543542 2_3:-45358899 Msa0293860:three_prime_UTR
TAGGAGAAGTTTGCCCGCTG+TGG 0.548726 2_3:+45359544 None:intergenic
GGGCTAGGAGGAGTGGAGGA+AGG 0.549534 2_3:+45359615 None:intergenic
AGGATCAGTCTACTCGTCCT+GGG 0.551485 2_3:-45359665 Msa0293860:CDS
ATGGAAATTCCCTCATTCCA+TGG 0.555829 2_3:-45359833 Msa0293860:CDS
CGTCCCCGACGTCATCTCGC+CGG 0.557464 2_3:+45362641 None:intergenic
TTCTCTCTCTCCTTCCACGT+TGG 0.560859 2_3:+45362612 None:intergenic
GCTGTAAATCCTAATGGTGA+TGG 0.562331 2_3:-45359852 Msa0293860:CDS
TAGCTGGGGAAGCTTGGAAG+AGG 0.564442 2_3:+45359776 None:intergenic
ACCAGGGCTAGGAGGAGTGG+AGG 0.565432 2_3:+45359611 None:intergenic
AGTTAACGGTGAATGTTGAC+CGG 0.566671 2_3:+45362891 None:intergenic
ATAGCAGCGAAGATCTTCTC+CGG 0.568682 2_3:-45362558 Msa0293860:CDS
GACGAGGCAACCAACGTGGA+AGG 0.571428 2_3:-45362622 Msa0293860:CDS
ATCAGTCTACTCGTCCTGGG+TGG 0.572626 2_3:-45359662 Msa0293860:CDS
TTTGTCCAGGGGTCCACATG+CGG 0.572765 2_3:+45359457 None:intergenic
AACATGTCCCACTTTGTCCA+GGG 0.573471 2_3:+45359445 None:intergenic
CGAGCAGTTGGAGAGCTAAG+TGG 0.574747 2_3:+45359714 None:intergenic
ACCATTAGGATTTACAGCAT+GGG 0.576979 2_3:+45359857 None:intergenic
ACGTGAGGTGGTTACTTCGC+CGG 0.577792 2_3:+45362864 None:intergenic
TCTCCGGTTTGAGAATGTAT+GGG 0.580133 2_3:-45362542 Msa0293860:CDS
AGGAAGAAGAGCCAGGACTT+GGG 0.580376 2_3:+45359898 None:intergenic
CAAATGGATTAGTAGCGACT+AGG 0.580823 2_3:+45359514 None:intergenic
ACCAACTGCACTGCTTCCAA+AGG 0.582208 2_3:+45359350 None:intergenic
TCCCAGTCAGCTTTCCTCTG+GGG 0.589485 2_3:+45359687 None:intergenic
TTACAGCATGGGATGAGCGC+GGG 0.592384 2_3:+45359868 None:intergenic
TGTGATAGGTGGTTCTGCAA+TGG 0.592423 2_3:-45359967 Msa0293860:CDS
GGTTGGATCGTTGAGCCTGA+TGG 0.594077 2_3:-45362456 Msa0293860:CDS
ATGTGGACCCCTGGACAAAG+TGG 0.596230 2_3:-45359453 Msa0293860:CDS
GGTCAAGAACTTGGCGACCA+GGG 0.596349 2_3:+45359595 None:intergenic
GGTTTGGTGAAGCCTTGGGA+AGG 0.598437 2_3:-45359330 Msa0293860:CDS
TGATGGTACAACGTATCGTA+AGG 0.599548 2_3:-45362439 Msa0293860:intron
GGAGAAGTTTGCCCGCTGTG+GGG 0.600569 2_3:+45359546 None:intergenic
CATTCACCGTTAACTAACTC+CGG 0.600897 2_3:-45362883 Msa0293860:five_prime_UTR
AGGAGAGAGAGAATAACAAG+AGG 0.603214 2_3:-45362602 Msa0293860:CDS
TGAAGCCTTGGGAAGGAGAG+AGG 0.605206 2_3:-45359323 Msa0293860:CDS
AAATGTACCTGCATGACCAA+AGG 0.606651 2_3:-45358751 Msa0293860:three_prime_UTR
GTGGGAGTGATTCCCGCATG+TGG 0.607015 2_3:-45359470 Msa0293860:CDS
CTCTTGGTACCTCAAAGACC+AGG 0.612700 2_3:-45359263 Msa0293860:intron
GACTCAAATTTCATATTGAG+GGG 0.622482 2_3:+45359048 None:intergenic
GTAGCGACTAGGCTGAAGGT+AGG 0.624575 2_3:+45359525 None:intergenic
TACTGCTGCCCACCCCACCC+AGG 0.630033 2_3:+45359648 None:intergenic
ATTAGTAGCGACTAGGCTGA+AGG 0.637373 2_3:+45359521 None:intergenic
ACTTGGCGACCAGGGCTAGG+AGG 0.641842 2_3:+45359603 None:intergenic
AATTGGAAAAGATATATGGT+AGG 0.642271 2_3:+45358696 None:intergenic
TGTGGACCCCTGGACAAAGT+GGG 0.642302 2_3:-45359452 Msa0293860:CDS
CTGACATGGTAAGATGAACA+CGG 0.642363 2_3:+45359939 None:intergenic
TACAACTTTAGTTAGGTGTG+GGG 0.643760 2_3:-45358898 Msa0293860:three_prime_UTR
ATACCTGTAATGGATTGGGT+TGG 0.647510 2_3:-45358809 Msa0293860:three_prime_UTR
CCCCAGCTATATATTCACAC+TGG 0.648796 2_3:-45359762 Msa0293860:CDS
ATGTTGACCGGAAAACTCGT+CGG 0.650604 2_3:+45362903 None:intergenic
TTTCAAGGGATGCAAGCCTG+CGG 0.653639 2_3:-45360000 Msa0293860:intron
GCAGTTGGAGAGCTAAGTGG+AGG 0.657333 2_3:+45359717 None:intergenic
TTTACAGCATGGGATGAGCG+CGG 0.658189 2_3:+45359867 None:intergenic
CTGCATAAATGAATAGTCAG+TGG 0.662411 2_3:-45359072 Msa0293860:three_prime_UTR
AGGAAGCACAGGGACTGACA+TGG 0.663416 2_3:+45359925 None:intergenic
CGGGGACGAGGCAACCAACG+TGG 0.666818 2_3:-45362626 Msa0293860:CDS
TGATCGGATCTAAGAACGTG+AGG 0.667343 2_3:+45362849 None:intergenic
CTTGGGTTGTAGGAAGCACA+GGG 0.669094 2_3:+45359915 None:intergenic
CCAGAGGAAAGCTGACTGGG+AGG 0.670133 2_3:-45359685 Msa0293860:CDS
ACATGTCCCACTTTGTCCAG+GGG 0.671696 2_3:+45359446 None:intergenic
TGACATGGTAAGATGAACAC+GGG 0.677171 2_3:+45359940 None:intergenic
CCAGTGTGAATATATAGCTG+GGG 0.692170 2_3:+45359762 None:intergenic
CTGATGATGATCCAGATGAG+AGG 0.693997 2_3:+45359802 None:intergenic
TCGGATCTAAGAACGTGAGG+TGG 0.699206 2_3:+45362852 None:intergenic
GAACGCATGGATGTGATAGG+TGG 0.705174 2_3:-45359978 Msa0293860:CDS
GGGATCAGGATGCCCCACAG+CGG 0.711509 2_3:-45359558 Msa0293860:CDS
CAACTGCTCGATCACCCCAG+AGG 0.741309 2_3:-45359701 Msa0293860:CDS
TTTCCGGCGAGATGACGTCG+GGG 0.771606 2_3:-45362644 Msa0293860:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTAATTTTAGTATTAATT+TGG - chr2_3:45359187-45359206 Msa0293860:intron 10.0%
!! TAATTTGAAAGAAAAAAAAA+TGG + chr2_3:45359514-45359533 None:intergenic 10.0%
!!! TATGATTTTGTTGTTATTTT+TGG - chr2_3:45359617-45359636 Msa0293860:CDS 15.0%
!! TAAAAAAAGAAGAAATATCA+CGG + chr2_3:45360076-45360095 None:intergenic 15.0%
!!! GTCAATATTTTTTTTTTTGA+AGG + chr2_3:45360555-45360574 None:intergenic 15.0%
!! TAATGAAAATGTTTATTTCA+AGG - chr2_3:45361523-45361542 Msa0293860:intron 15.0%
!! AATGAAAATGTTTATTTCAA+GGG - chr2_3:45361524-45361543 Msa0293860:intron 15.0%
!!! TTATTCTTTTATTTTCTCTA+AGG - chr2_3:45362586-45362605 Msa0293860:CDS 15.0%
!! TTCATATTCAAAGTAAAATT+AGG - chr2_3:45362754-45362773 Msa0293860:five_prime_UTR 15.0%
!!! AAAAAAATTTGTTATGCATG+TGG - chr2_3:45359284-45359303 Msa0293860:CDS 20.0%
!!! AAAAAATTTGTTATGCATGT+GGG - chr2_3:45359285-45359304 Msa0293860:CDS 20.0%
!!! ATTTTGAGTATTTATGTGTT+TGG - chr2_3:45359533-45359552 Msa0293860:CDS 20.0%
!!! TTGTTGTTATTTTTGGTTTA+TGG - chr2_3:45359624-45359643 Msa0293860:CDS 20.0%
!!! GTTAGATTCTTTCTTTATTT+AGG - chr2_3:45359668-45359687 Msa0293860:CDS 20.0%
!!! AAAAATGGTATTTTGAGATT+TGG - chr2_3:45359864-45359883 Msa0293860:CDS 20.0%
!! AAAAAAAGAAGAAATATCAC+GGG + chr2_3:45360075-45360094 None:intergenic 20.0%
!!! GTGATATTTCTTCTTTTTTT+AGG - chr2_3:45360075-45360094 Msa0293860:intron 20.0%
!!! ATATTTCTTCTTTTTTTAGG+AGG - chr2_3:45360078-45360097 Msa0293860:intron 20.0%
!! AATAAATGCAAAAACGAAAA+TGG + chr2_3:45360295-45360314 None:intergenic 20.0%
!!! GTTTTTGCATTTATTGTTTT+TGG - chr2_3:45360300-45360319 Msa0293860:intron 20.0%
!! AAAAGATGAATAGAAAAATG+TGG - chr2_3:45360324-45360343 Msa0293860:intron 20.0%
!! TGAACAAAAATTAACCAAAA+TGG - chr2_3:45360417-45360436 Msa0293860:intron 20.0%
!!! ATATGATATGTCAATTTTGT+AGG + chr2_3:45360532-45360551 None:intergenic 20.0%
!! AATATACTAAAAGCTATCAA+TGG - chr2_3:45361016-45361035 Msa0293860:intron 20.0%
!!! AGATTTAATTCCTTTTTAAG+CGG + chr2_3:45361243-45361262 None:intergenic 20.0%
!!! ATATTAGATGCTTTATTGAA+GGG - chr2_3:45361385-45361404 Msa0293860:intron 20.0%
!!! TATATCATTTTAGCAACTAA+TGG + chr2_3:45361442-45361461 None:intergenic 20.0%
!! ATATTATGTAGAAAAGTTAG+AGG - chr2_3:45362517-45362536 Msa0293860:CDS 20.0%
!! TTATGTATACAACTTTAGTT+AGG - chr2_3:45362633-45362652 Msa0293860:CDS 20.0%
!! AGAAAATTGGAAAAGATATA+TGG + chr2_3:45362849-45362868 None:intergenic 20.0%
!! AAAAACAAGTGATAGAAAAT+TGG + chr2_3:45362862-45362881 None:intergenic 20.0%
!!! TGTTTTTCTGATTTTATTTC+AGG - chr2_3:45362875-45362894 Msa0293860:five_prime_UTR 20.0%
!!! GTTTTTCTGATTTTATTTCA+GGG - chr2_3:45362876-45362895 Msa0293860:five_prime_UTR 20.0%
!! TTTCAGAAATCTAAGAAAAA+TGG + chr2_3:45362914-45362933 None:intergenic 20.0%
! ATTTGGAAGAAATTGAAAAC+AGG + chr2_3:45358727-45358746 None:intergenic 25.0%
!! AAGCTCTTTGAAGATTTAAT+CGG + chr2_3:45358795-45358814 None:intergenic 25.0%
!! CTGATAATTTTTCTGTTCAT+CGG - chr2_3:45358827-45358846 Msa0293860:three_prime_UTR 25.0%
!!! GTTTTTGTTTTTTTCTTCAC+CGG - chr2_3:45358859-45358878 Msa0293860:three_prime_UTR 25.0%
!!! AAAAATTTGTTATGCATGTG+GGG - chr2_3:45359286-45359305 Msa0293860:CDS 25.0%
! CAATGATTCTTGAAATCAAA+AGG - chr2_3:45359372-45359391 Msa0293860:CDS 25.0%
! AAATCAAAAGGACGTAAAAA+TGG - chr2_3:45359384-45359403 Msa0293860:CDS 25.0%
! GTAATGTGATTACAAGAATT+AGG - chr2_3:45359646-45359665 Msa0293860:CDS 25.0%
!! AACATGACCTTTTGAATTTA+AGG - chr2_3:45359921-45359940 Msa0293860:CDS 25.0%
!! ACATGACCTTTTGAATTTAA+GGG - chr2_3:45359922-45359941 Msa0293860:CDS 25.0%
! AAACTACCCTTAAATTCAAA+AGG + chr2_3:45359931-45359950 None:intergenic 25.0%
!! TTTGAATTTAAGGGTAGTTT+TGG - chr2_3:45359931-45359950 Msa0293860:CDS 25.0%
! TAGATCGTCATCAATAATAA+AGG + chr2_3:45360168-45360187 None:intergenic 25.0%
! ACGAAAATGGAAAAAGTAAA+AGG + chr2_3:45360282-45360301 None:intergenic 25.0%
! ACAGTATATAAAACATCAAC+TGG + chr2_3:45360493-45360512 None:intergenic 25.0%
!! TCTATTTGGGATATTTAATC+TGG + chr2_3:45360617-45360636 None:intergenic 25.0%
! AACATTGAAGAGTTCTATTT+GGG + chr2_3:45360630-45360649 None:intergenic 25.0%
! TTACTAGTGTTCTTCAATAA+TGG - chr2_3:45360660-45360679 Msa0293860:intron 25.0%
! AGAATTATTTAACAGAACGT+AGG + chr2_3:45360979-45360998 None:intergenic 25.0%
! CTATCAATGGTAGAATTTAA+GGG - chr2_3:45361029-45361048 Msa0293860:intron 25.0%
!!! AATCAAAATCATTTTTGCAG+TGG + chr2_3:45361069-45361088 None:intergenic 25.0%
! GAAAAAAGAGATGAATAGTT+TGG + chr2_3:45361121-45361140 None:intergenic 25.0%
!!! GATTTAATTCCTTTTTAAGC+GGG + chr2_3:45361242-45361261 None:intergenic 25.0%
! GAAAAAGAACTTCCTATTAT+TGG + chr2_3:45361328-45361347 None:intergenic 25.0%
!! AAAATATAACTTGCATGCAA+TGG + chr2_3:45361359-45361378 None:intergenic 25.0%
!! CATATTAGATGCTTTATTGA+AGG - chr2_3:45361384-45361403 Msa0293860:intron 25.0%
!!! ATTTATGCAGCACTTTTTTT+TGG + chr2_3:45362456-45362475 None:intergenic 25.0%
! AGACTCAAATTTCATATTGA+GGG + chr2_3:45362494-45362513 None:intergenic 25.0%
! AAAGATCAATATACCTGTAA+TGG - chr2_3:45362719-45362738 Msa0293860:five_prime_UTR 25.0%
! AATTGGAAAAGATATATGGT+AGG + chr2_3:45362845-45362864 None:intergenic 25.0%
TCATTGTTATCGCAATGTTT+CGG + chr2_3:45359034-45359053 None:intergenic 30.0%
!! ATCCGTGAGAAATATTTTGA+GGG - chr2_3:45359815-45359834 Msa0293860:CDS 30.0%
GAGGGTGAAAGAAAAAAAAA+TGG - chr2_3:45359849-45359868 Msa0293860:CDS 30.0%
!!! TTTTGAGATTTGGACTTTTG+AGG - chr2_3:45359874-45359893 Msa0293860:CDS 30.0%
!! TTTGAGATTTGGACTTTTGA+GGG - chr2_3:45359875-45359894 Msa0293860:CDS 30.0%
!! ATTGATGACGATCTATAAAC+TGG - chr2_3:45360173-45360192 Msa0293860:intron 30.0%
!!! AACTGTATTGATTGCCATTT+TGG + chr2_3:45360434-45360453 None:intergenic 30.0%
TACTCCAAGCAAAACTTATT+AGG - chr2_3:45360467-45360486 Msa0293860:intron 30.0%
GAACATTGAAGAGTTCTATT+TGG + chr2_3:45360631-45360650 None:intergenic 30.0%
ACTCTTCAATGTTCAACTAT+AGG - chr2_3:45360637-45360656 Msa0293860:intron 30.0%
! AGTGTTCTTCAATAATGGAA+TGG - chr2_3:45360665-45360684 Msa0293860:intron 30.0%
!! GTTTCTAGTAACTGATTCAA+TGG - chr2_3:45360838-45360857 Msa0293860:intron 30.0%
AAAATCAATACATGCAGAGA+AGG + chr2_3:45360901-45360920 None:intergenic 30.0%
GCTATCAATGGTAGAATTTA+AGG - chr2_3:45361028-45361047 Msa0293860:intron 30.0%
GAATTCAATTCAGTGCTTTA+AGG + chr2_3:45361176-45361195 None:intergenic 30.0%
AATTGAATTCACTGTTAACC+TGG - chr2_3:45361186-45361205 Msa0293860:intron 30.0%
TTGCTACAATGTCCAATAAT+AGG - chr2_3:45361313-45361332 Msa0293860:intron 30.0%
! GCATGCAAGTTATATTTTGT+TGG - chr2_3:45361361-45361380 Msa0293860:intron 30.0%
ATTTCAGATGAATTTGCCTT+TGG - chr2_3:45362172-45362191 Msa0293860:intron 30.0%
AGTGACAACATTTGAAAAAC+TGG - chr2_3:45362303-45362322 Msa0293860:intron 30.0%
GTGACAACATTTGAAAAACT+GGG - chr2_3:45362304-45362323 Msa0293860:intron 30.0%
GACTCAAATTTCATATTGAG+GGG + chr2_3:45362493-45362512 None:intergenic 30.0%
CAGACTCAAATTTCATATTG+AGG + chr2_3:45362495-45362514 None:intergenic 30.0%
TATGTAGAAAAGTTAGAGGA+TGG - chr2_3:45362521-45362540 Msa0293860:CDS 30.0%
TATACAACTTTAGTTAGGTG+TGG - chr2_3:45362638-45362657 Msa0293860:exon 30.0%
ATACAACTTTAGTTAGGTGT+GGG - chr2_3:45362639-45362658 Msa0293860:exon 30.0%
!! ATTTTTCGACCCTTTCATTT+TGG - chr2_3:45362665-45362684 Msa0293860:five_prime_UTR 30.0%
CATGATTGACCAAAATGAAA+GGG + chr2_3:45362677-45362696 None:intergenic 30.0%
ACATGATTGACCAAAATGAA+AGG + chr2_3:45362678-45362697 None:intergenic 30.0%
ATCTTTCCAATAGTATCTGA+GGG + chr2_3:45362705-45362724 None:intergenic 30.0%
!! TCAATATACCTGTAATGGAT+TGG - chr2_3:45362724-45362743 Msa0293860:five_prime_UTR 30.0%
!! CAATATACCTGTAATGGATT+GGG - chr2_3:45362725-45362744 Msa0293860:five_prime_UTR 30.0%
AATTTGCATTGAACTTCCTT+TGG + chr2_3:45362806-45362825 None:intergenic 30.0%
AAGGAAGTTCAATGCAAATT+CGG - chr2_3:45362806-45362825 Msa0293860:five_prime_UTR 30.0%
GCAAATTCGGATTGAATTAT+AGG - chr2_3:45362819-45362838 Msa0293860:five_prime_UTR 30.0%
!! TTTTTGAAGAAACGCGTTGA+AGG + chr2_3:45358601-45358620 None:intergenic 35.0%
!! CAGGAGAATTTTGATCTGAT+CGG + chr2_3:45358708-45358727 None:intergenic 35.0%
!!! TTTGTTTTTTTCTTCACCGG+CGG - chr2_3:45358862-45358881 Msa0293860:three_prime_UTR 35.0%
AAAGCTCTTTGTAATGAAGC+TGG - chr2_3:45359061-45359080 Msa0293860:three_prime_UTR 35.0%
! ATCAGAAGTGTATGTGCAAT+AGG + chr2_3:45359415-45359434 None:intergenic 35.0%
TGTCTACAATGATACAGACT+CGG + chr2_3:45359562-45359581 None:intergenic 35.0%
!!! GCTGCGTTTAATGTTACTTT+TGG - chr2_3:45359592-45359611 Msa0293860:CDS 35.0%
! TTTCTTTATTTAGGACTCGC+CGG - chr2_3:45359677-45359696 Msa0293860:CDS 35.0%
AGCACTAAAGATTCTCTCTA+TGG - chr2_3:45359761-45359780 Msa0293860:CDS 35.0%
! GATCCGTGAGAAATATTTTG+AGG - chr2_3:45359814-45359833 Msa0293860:CDS 35.0%
!! TCCGTGAGAAATATTTTGAG+GGG - chr2_3:45359816-45359835 Msa0293860:CDS 35.0%
!!! AAGGGTAGTTTTGGTAGTTT+AGG - chr2_3:45359940-45359959 Msa0293860:CDS 35.0%
AAGAAATATCACGGGAAGTA+AGG + chr2_3:45360067-45360086 None:intergenic 35.0%
!!! CTTCTTTTTTTAGGAGGTTG+CGG - chr2_3:45360084-45360103 Msa0293860:intron 35.0%
GATCTATAAACTGGAAAGAG+TGG - chr2_3:45360182-45360201 Msa0293860:intron 35.0%
CTATTGAGGACAAACAAAAC+TGG + chr2_3:45360235-45360254 None:intergenic 35.0%
!!! CAGTTTTGTTTGTCCTCAAT+AGG - chr2_3:45360233-45360252 Msa0293860:intron 35.0%
GTTGAGTACGTGTGTTTAAA+GGG - chr2_3:45360346-45360365 Msa0293860:intron 35.0%
TTGAGTACGTGTGTTTAAAG+GGG - chr2_3:45360347-45360366 Msa0293860:intron 35.0%
CTCTGTGAATTAAAAGTGAC+AGG - chr2_3:45360383-45360402 Msa0293860:intron 35.0%
!! AGGAGTATTAGTACAGTTTG+AGG - chr2_3:45360808-45360827 Msa0293860:intron 35.0%
! GGAGTATTAGTACAGTTTGA+GGG - chr2_3:45360809-45360828 Msa0293860:intron 35.0%
CACCAAAGACAAAAAGATGT+TGG - chr2_3:45360926-45360945 Msa0293860:intron 35.0%
! GACCAACATCTTTTTGTCTT+TGG + chr2_3:45360931-45360950 None:intergenic 35.0%
!! GATGAATAGTTTGGAGCTTT+TGG + chr2_3:45361112-45361131 None:intergenic 35.0%
! TAGATTTTTGCATCATAGCC+AGG + chr2_3:45361207-45361226 None:intergenic 35.0%
GACTGTATATACTGATCTAC+AGG - chr2_3:45361283-45361302 Msa0293860:intron 35.0%
! TTAGCAACTAATGGATCGAT+AGG + chr2_3:45361433-45361452 None:intergenic 35.0%
ACCATTAGGATTTACAGCAT+GGG + chr2_3:45361684-45361703 None:intergenic 35.0%
! TACTAATCCATTTGGCTTCA+GGG - chr2_3:45362033-45362052 Msa0293860:intron 35.0%
! TCTGAAATAGCTTCAGACAT+TGG + chr2_3:45362160-45362179 None:intergenic 35.0%
AAATGTTGTCACTACTTACC+TGG + chr2_3:45362296-45362315 None:intergenic 35.0%
ACCTGAATTCATATTGTTGC+AGG - chr2_3:45362406-45362425 Msa0293860:intron 35.0%
ACCTGCAACAATATGAATTC+AGG + chr2_3:45362410-45362429 None:intergenic 35.0%
CTGCATAAATGAATAGTCAG+TGG - chr2_3:45362466-45362485 Msa0293860:CDS 35.0%
AAAGTTAGAGGATGGAGTTA+AGG - chr2_3:45362529-45362548 Msa0293860:CDS 35.0%
TACAACTTTAGTTAGGTGTG+GGG - chr2_3:45362640-45362659 Msa0293860:exon 35.0%
GTTAAACCCTCAGATACTAT+TGG - chr2_3:45362696-45362715 Msa0293860:five_prime_UTR 35.0%
GATCTTTCCAATAGTATCTG+AGG + chr2_3:45362706-45362725 None:intergenic 35.0%
AGTTAACGGTGAATGTTGAC+CGG + chr2_3:45358650-45358669 None:intergenic 40.0%
CATTCACCGTTAACTAACTC+CGG - chr2_3:45358655-45358674 Msa0293860:three_prime_UTR 40.0%
TACAAAACGACTGCGTTTGA+AGG + chr2_3:45358756-45358775 None:intergenic 40.0%
AGGAGAGAGAGAATAACAAG+AGG - chr2_3:45358936-45358955 Msa0293860:three_prime_UTR 40.0%
AGAATAACAAGAGGAGAGAG+AGG - chr2_3:45358945-45358964 Msa0293860:three_prime_UTR 40.0%
! TTCTCCGGTTTGAGAATGTA+TGG - chr2_3:45358995-45359014 Msa0293860:three_prime_UTR 40.0%
! TCTCCGGTTTGAGAATGTAT+GGG - chr2_3:45358996-45359015 Msa0293860:three_prime_UTR 40.0%
GTTCCCATACATTCTCAAAC+CGG + chr2_3:45359002-45359021 None:intergenic 40.0%
CTCTTTGTAATGAAGCTGGT+TGG - chr2_3:45359065-45359084 Msa0293860:three_prime_UTR 40.0%
TTACGATACGTTGTACCATC+AGG + chr2_3:45359100-45359119 None:intergenic 40.0%
TGATGGTACAACGTATCGTA+AGG - chr2_3:45359099-45359118 Msa0293860:three_prime_UTR 40.0%
AGTGTCATGTGCTATATTGC+TGG + chr2_3:45359331-45359350 None:intergenic 40.0%
GCCCCTCAAAATATTTCTCA+CGG + chr2_3:45359820-45359839 None:intergenic 40.0%
GGTAGTTTAGGTGTGTGATT+TGG - chr2_3:45359952-45359971 Msa0293860:CDS 40.0%
!! TTGCTGAGCTTGTTGCTATT+TGG - chr2_3:45359988-45360007 Msa0293860:CDS 40.0%
! AAGCTTTTGCAGACATTGCA+TGG - chr2_3:45360014-45360033 Msa0293860:intron 40.0%
CATTGCATGGTACTCTGATT+TGG - chr2_3:45360027-45360046 Msa0293860:intron 40.0%
AACCAAGGAAAGTCCTATTG+AGG + chr2_3:45360249-45360268 None:intergenic 40.0%
TCAATAGGACTTTCCTTGGT+TGG - chr2_3:45360248-45360267 Msa0293860:intron 40.0%
CAATAGGACTTTCCTTGGTT+GGG - chr2_3:45360249-45360268 Msa0293860:intron 40.0%
AAAGGAAAGAAACCCAACCA+AGG + chr2_3:45360264-45360283 None:intergenic 40.0%
GGTTGAGTACGTGTGTTTAA+AGG - chr2_3:45360345-45360364 Msa0293860:intron 40.0%
! CTGGCCTAATAAGTTTTGCT+TGG + chr2_3:45360474-45360493 None:intergenic 40.0%
ACTCCTACAAATGTCAGAGT+GGG + chr2_3:45360780-45360799 None:intergenic 40.0%
TACTCCTACAAATGTCAGAG+TGG + chr2_3:45360781-45360800 None:intergenic 40.0%
ACTCTGACATTTGTAGGAGT+AGG - chr2_3:45360780-45360799 Msa0293860:intron 40.0%
ATTTGTAGGAGTAGGACTGT+AGG - chr2_3:45360788-45360807 Msa0293860:intron 40.0%
CAATGGTAGAATTTAAGGGC+TGG - chr2_3:45361033-45361052 Msa0293860:intron 40.0%
!! CAGTGCTTTAAGGCTTGTTT+GGG + chr2_3:45361166-45361185 None:intergenic 40.0%
!! TCAGTGCTTTAAGGCTTGTT+TGG + chr2_3:45361167-45361186 None:intergenic 40.0%
ACATTCTTGCCCGCTTAAAA+AGG - chr2_3:45361230-45361249 Msa0293860:intron 40.0%
TGACATGGTAAGATGAACAC+GGG + chr2_3:45361601-45361620 None:intergenic 40.0%
CTGACATGGTAAGATGAACA+CGG + chr2_3:45361602-45361621 None:intergenic 40.0%
TCCCATGCTGTAAATCCTAA+TGG - chr2_3:45361680-45361699 Msa0293860:intron 40.0%
CACCATTAGGATTTACAGCA+TGG + chr2_3:45361685-45361704 None:intergenic 40.0%
GCTGTAAATCCTAATGGTGA+TGG - chr2_3:45361686-45361705 Msa0293860:intron 40.0%
AGGGAATTTCCATCACCATT+AGG + chr2_3:45361698-45361717 None:intergenic 40.0%
ATGGAAATTCCCTCATTCCA+TGG - chr2_3:45361705-45361724 Msa0293860:intron 40.0%
!! GTTTTTGAGCCATGGAATGA+GGG + chr2_3:45361717-45361736 None:intergenic 40.0%
AATATATAGCTGGGGAAGCT+TGG + chr2_3:45361771-45361790 None:intergenic 40.0%
CCAGTGTGAATATATAGCTG+GGG + chr2_3:45361779-45361798 None:intergenic 40.0%
GCCAGTGTGAATATATAGCT+GGG + chr2_3:45361780-45361799 None:intergenic 40.0%
AGCCAGTGTGAATATATAGC+TGG + chr2_3:45361781-45361800 None:intergenic 40.0%
!! CAAATGGATTAGTAGCGACT+AGG + chr2_3:45362027-45362046 None:intergenic 40.0%
CTAGTCGCTACTAATCCATT+TGG - chr2_3:45362025-45362044 Msa0293860:intron 40.0%
! CTACTAATCCATTTGGCTTC+AGG - chr2_3:45362032-45362051 Msa0293860:intron 40.0%
CATCTGATCCAGAATCTTCA+TGG + chr2_3:45362243-45362262 None:intergenic 40.0%
! GATGATTTAGAGCTCACTCT+TGG - chr2_3:45362259-45362278 Msa0293860:intron 40.0%
!! ATACCTGTAATGGATTGGGT+TGG - chr2_3:45362729-45362748 Msa0293860:five_prime_UTR 40.0%
ATACCAACCCAATCCATTAC+AGG + chr2_3:45362735-45362754 None:intergenic 40.0%
AAATGTACCTGCATGACCAA+AGG - chr2_3:45362787-45362806 Msa0293860:five_prime_UTR 40.0%
! CAATTCTCCGACGAGTTTTC+CGG - chr2_3:45358628-45358647 Msa0293860:three_prime_UTR 45.0%
ATGTTGACCGGAAAACTCGT+CGG + chr2_3:45358638-45358657 None:intergenic 45.0%
ACTTCGCCGGAGTTAGTTAA+CGG + chr2_3:45358664-45358683 None:intergenic 45.0%
TGATCGGATCTAAGAACGTG+AGG + chr2_3:45358692-45358711 None:intergenic 45.0%
GCGTTTGAAGGAGCTGAATT+TGG + chr2_3:45358744-45358763 None:intergenic 45.0%
ATAGCAGCGAAGATCTTCTC+CGG - chr2_3:45358980-45358999 Msa0293860:three_prime_UTR 45.0%
GCTTCACGCTTAAAAGCGAA+AGG + chr2_3:45359744-45359763 None:intergenic 45.0%
GTCCTCAATAGGACTTTCCT+TGG - chr2_3:45360244-45360263 Msa0293860:intron 45.0%
TTCCCCACTCTGACATTTGT+AGG - chr2_3:45360774-45360793 Msa0293860:intron 45.0%
CTCCTACAAATGTCAGAGTG+GGG + chr2_3:45360779-45360798 None:intergenic 45.0%
! TTAAGGCTTGTTTGGGAGGA+CGG + chr2_3:45361159-45361178 None:intergenic 45.0%
!! TGCTTTAAGGCTTGTTTGGG+AGG + chr2_3:45361163-45361182 None:intergenic 45.0%
! TGTGATAGGTGGTTCTGCAA+TGG - chr2_3:45361571-45361590 Msa0293860:intron 45.0%
! GTGATAGGTGGTTCTGCAAT+GGG - chr2_3:45361572-45361591 Msa0293860:intron 45.0%
!! GGTTTTTGAGCCATGGAATG+AGG + chr2_3:45361718-45361737 None:intergenic 45.0%
!! GATGAGAGGTTTTTGAGCCA+TGG + chr2_3:45361725-45361744 None:intergenic 45.0%
TGGCTCAAAAACCTCTCATC+TGG - chr2_3:45361725-45361744 Msa0293860:intron 45.0%
! CTGATGATGATCCAGATGAG+AGG + chr2_3:45361739-45361758 None:intergenic 45.0%
CCCCAGCTATATATTCACAC+TGG - chr2_3:45361776-45361795 Msa0293860:intron 45.0%
ACCAATCTGGGTCAAGAACT+TGG + chr2_3:45361955-45361974 None:intergenic 45.0%
!! TTGACCCAGATTGGTTTGCT+GGG - chr2_3:45361960-45361979 Msa0293860:intron 45.0%
TGATCCCAGCAAACCAATCT+GGG + chr2_3:45361967-45361986 None:intergenic 45.0%
ATTAGTAGCGACTAGGCTGA+AGG + chr2_3:45362020-45362039 None:intergenic 45.0%
! TTCAGGGAAGAGGTTTTCTG+TGG - chr2_3:45362049-45362068 Msa0293860:intron 45.0%
! TCAGGGAAGAGGTTTTCTGT+GGG - chr2_3:45362050-45362069 Msa0293860:intron 45.0%
AACATGTCCCACTTTGTCCA+GGG + chr2_3:45362096-45362115 None:intergenic 45.0%
!! AGTTGGTTTGGTGAAGCCTT+GGG - chr2_3:45362204-45362223 Msa0293860:intron 45.0%
GAGAGGATCCATGAAGATTC+TGG - chr2_3:45362232-45362251 Msa0293860:intron 45.0%
! CACTACTTACCTGGTCTTTG+AGG + chr2_3:45362287-45362306 None:intergenic 45.0%
TGAACTTCCTTTGGTCATGC+AGG + chr2_3:45362797-45362816 None:intergenic 45.0%
!! AATAAAAGAATAAAATAAAA+TGG + chr2_3:45362579-45362598 None:intergenic 5.0%
TCGGATCTAAGAACGTGAGG+TGG + chr2_3:45358689-45358708 None:intergenic 50.0%
CCGGAAAAAAATCTCACCGC+CGG + chr2_3:45358881-45358900 None:intergenic 50.0%
!!! CCGGCGGTGAGATTTTTTTC+CGG - chr2_3:45358878-45358897 Msa0293860:three_prime_UTR 50.0%
! TTTTTCCGGCGAGATGACGT+CGG - chr2_3:45358892-45358911 Msa0293860:three_prime_UTR 50.0%
TTCTCTCTCTCCTTCCACGT+TGG + chr2_3:45358929-45358948 None:intergenic 50.0%
CGACCAGATCTAACGTACAC+CGG + chr2_3:45359699-45359718 None:intergenic 50.0%
CGGTGTACGTTAGATCTGGT+CGG - chr2_3:45359697-45359716 Msa0293860:CDS 50.0%
GGTGTACGTTAGATCTGGTC+GGG - chr2_3:45359698-45359717 Msa0293860:CDS 50.0%
GTGTACGTTAGATCTGGTCG+GGG - chr2_3:45359699-45359718 Msa0293860:CDS 50.0%
! TTTGAGGGGCATAGATCTCG+AGG - chr2_3:45359830-45359849 Msa0293860:CDS 50.0%
! TTGAGGGGCATAGATCTCGA+GGG - chr2_3:45359831-45359850 Msa0293860:CDS 50.0%
! CTTGTTTGGGAGGACGGTTT+TGG + chr2_3:45361153-45361172 None:intergenic 50.0%
TTTCAAGGGATGCAAGCCTG+CGG - chr2_3:45361538-45361557 Msa0293860:intron 50.0%
GAACGCATGGATGTGATAGG+TGG - chr2_3:45361560-45361579 Msa0293860:intron 50.0%
! CTTGGGTTGTAGGAAGCACA+GGG + chr2_3:45361626-45361645 None:intergenic 50.0%
! ACTTGGGTTGTAGGAAGCAC+AGG + chr2_3:45361627-45361646 None:intergenic 50.0%
AGGAAGAAGAGCCAGGACTT+GGG + chr2_3:45361643-45361662 None:intergenic 50.0%
AAGGAAGAAGAGCCAGGACT+TGG + chr2_3:45361644-45361663 None:intergenic 50.0%
TTTACAGCATGGGATGAGCG+CGG + chr2_3:45361674-45361693 None:intergenic 50.0%
AGGATCAGTCTACTCGTCCT+GGG - chr2_3:45361873-45361892 Msa0293860:intron 50.0%
GCCAAGTTCTTGACCCAGAT+TGG - chr2_3:45361951-45361970 Msa0293860:intron 50.0%
!! CTTGACCCAGATTGGTTTGC+TGG - chr2_3:45361959-45361978 Msa0293860:intron 50.0%
CTGATCCCAGCAAACCAATC+TGG + chr2_3:45361968-45361987 None:intergenic 50.0%
!! CAGATTGGTTTGCTGGGATC+AGG - chr2_3:45361966-45361985 Msa0293860:intron 50.0%
! TCCATTTGGCTTCAGGGAAG+AGG - chr2_3:45362039-45362058 Msa0293860:intron 50.0%
ACCTCTTCCCTGAAGCCAAA+TGG + chr2_3:45362043-45362062 None:intergenic 50.0%
ACATGTCCCACTTTGTCCAG+GGG + chr2_3:45362095-45362114 None:intergenic 50.0%
GAACATGTCCCACTTTGTCC+AGG + chr2_3:45362097-45362116 None:intergenic 50.0%
! TGTTCTCCAGCTTTAGCTGC+AGG - chr2_3:45362112-45362131 Msa0293860:intron 50.0%
ACCAACTGCACTGCTTCCAA+AGG + chr2_3:45362191-45362210 None:intergenic 50.0%
TGGAAGCAGTGCAGTTGGTT+TGG - chr2_3:45362192-45362211 Msa0293860:intron 50.0%
!! CAGTTGGTTTGGTGAAGCCT+TGG - chr2_3:45362203-45362222 Msa0293860:intron 50.0%
CTCTTGGTACCTCAAAGACC+AGG - chr2_3:45362275-45362294 Msa0293860:intron 50.0%
ACGTGAGGTGGTTACTTCGC+CGG + chr2_3:45358677-45358696 None:intergenic 55.0%
! TTTTCCGGCGAGATGACGTC+GGG - chr2_3:45358893-45358912 Msa0293860:three_prime_UTR 55.0%
GGTTGGATCGTTGAGCCTGA+TGG - chr2_3:45359082-45359101 Msa0293860:three_prime_UTR 55.0%
TCGCCGGTGTACGTTAGATC+TGG - chr2_3:45359693-45359712 Msa0293860:CDS 55.0%
ATCACATCCATGCGTTCCGC+AGG + chr2_3:45361557-45361576 None:intergenic 55.0%
GCGGAACGCATGGATGTGAT+AGG - chr2_3:45361557-45361576 Msa0293860:intron 55.0%
! AGGAAGCACAGGGACTGACA+TGG + chr2_3:45361616-45361635 None:intergenic 55.0%
GCTTCCTACAACCCAAGTCC+TGG - chr2_3:45361629-45361648 Msa0293860:intron 55.0%
! AGAGCCAGGACTTGGGTTGT+AGG + chr2_3:45361636-45361655 None:intergenic 55.0%
CTAGGGAAGGAAGAAGAGCC+AGG + chr2_3:45361650-45361669 None:intergenic 55.0%
TTACAGCATGGGATGAGCGC+GGG + chr2_3:45361673-45361692 None:intergenic 55.0%
TAGCTGGGGAAGCTTGGAAG+AGG + chr2_3:45361765-45361784 None:intergenic 55.0%
!! AGGAGTGACAGGAGCACTGA+TGG + chr2_3:45361804-45361823 None:intergenic 55.0%
GAGCTAAGTGGAGGAGTGAC+AGG + chr2_3:45361815-45361834 None:intergenic 55.0%
GCAGTTGGAGAGCTAAGTGG+AGG + chr2_3:45361824-45361843 None:intergenic 55.0%
CGAGCAGTTGGAGAGCTAAG+TGG + chr2_3:45361827-45361846 None:intergenic 55.0%
ACCCCAGAGGAAAGCTGACT+GGG - chr2_3:45361850-45361869 Msa0293860:intron 55.0%
TCCCAGTCAGCTTTCCTCTG+GGG + chr2_3:45361854-45361873 None:intergenic 55.0%
CTCCCAGTCAGCTTTCCTCT+GGG + chr2_3:45361855-45361874 None:intergenic 55.0%
GAGGATCAGTCTACTCGTCC+TGG - chr2_3:45361872-45361891 Msa0293860:intron 55.0%
ATCAGTCTACTCGTCCTGGG+TGG - chr2_3:45361876-45361895 Msa0293860:intron 55.0%
TCAGTCTACTCGTCCTGGGT+GGG - chr2_3:45361877-45361896 Msa0293860:intron 55.0%
GGTCAAGAACTTGGCGACCA+GGG + chr2_3:45361946-45361965 None:intergenic 55.0%
AGGAGAAGTTTGCCCGCTGT+GGG + chr2_3:45361996-45362015 None:intergenic 55.0%
TAGGAGAAGTTTGCCCGCTG+TGG + chr2_3:45361997-45362016 None:intergenic 55.0%
GTAGCGACTAGGCTGAAGGT+AGG + chr2_3:45362016-45362035 None:intergenic 55.0%
TTTGTCCAGGGGTCCACATG+CGG + chr2_3:45362084-45362103 None:intergenic 55.0%
ATGTGGACCCCTGGACAAAG+TGG - chr2_3:45362085-45362104 Msa0293860:intron 55.0%
TGTGGACCCCTGGACAAAGT+GGG - chr2_3:45362086-45362105 Msa0293860:intron 55.0%
TCAGAGCCTGCAGCTAAAGC+TGG + chr2_3:45362121-45362140 None:intergenic 55.0%
! GCCTTTGGAAGCAGTGCAGT+TGG - chr2_3:45362187-45362206 Msa0293860:intron 55.0%
!! GGTTTGGTGAAGCCTTGGGA+AGG - chr2_3:45362208-45362227 Msa0293860:intron 55.0%
TGAAGCCTTGGGAAGGAGAG+AGG - chr2_3:45362215-45362234 Msa0293860:intron 55.0%
TGGATCCTCTCTCCTTCCCA+AGG + chr2_3:45362223-45362242 None:intergenic 55.0%
TTTCCGGCGAGATGACGTCG+GGG - chr2_3:45358894-45358913 Msa0293860:three_prime_UTR 60.0%
GACGAGGCAACCAACGTGGA+AGG - chr2_3:45358916-45358935 Msa0293860:three_prime_UTR 60.0%
TCTGGTCGGGGTAGTGTCTG+AGG - chr2_3:45359711-45359730 Msa0293860:CDS 60.0%
ATGCAAGCCTGCGGAACGCA+TGG - chr2_3:45361547-45361566 Msa0293860:intron 60.0%
!! CTCTGGGGTGATCGAGCAGT+TGG + chr2_3:45361839-45361858 None:intergenic 60.0%
CAACTGCTCGATCACCCCAG+AGG - chr2_3:45361837-45361856 Msa0293860:intron 60.0%
CACCCCAGAGGAAAGCTGAC+TGG - chr2_3:45361849-45361868 Msa0293860:intron 60.0%
CCTCCCAGTCAGCTTTCCTC+TGG + chr2_3:45361856-45361875 None:intergenic 60.0%
CCAGAGGAAAGCTGACTGGG+AGG - chr2_3:45361853-45361872 Msa0293860:intron 60.0%
CAGTCTACTCGTCCTGGGTG+GGG - chr2_3:45361878-45361897 Msa0293860:intron 60.0%
TAGGAGGAGTGGAGGAAGGC+TGG + chr2_3:45361922-45361941 None:intergenic 60.0%
AGAACTTGGCGACCAGGGCT+AGG + chr2_3:45361941-45361960 None:intergenic 60.0%
GGGTCAAGAACTTGGCGACC+AGG + chr2_3:45361947-45361966 None:intergenic 60.0%
GGAGAAGTTTGCCCGCTGTG+GGG + chr2_3:45361995-45362014 None:intergenic 60.0%
GTGGGAGTGATTCCCGCATG+TGG - chr2_3:45362068-45362087 Msa0293860:intron 60.0%
TTGTCCAGGGGTCCACATGC+GGG + chr2_3:45362083-45362102 None:intergenic 60.0%
! CATGGGATGAGCGCGGGCTA+GGG + chr2_3:45361667-45361686 None:intergenic 65.0%
TCTACTCGTCCTGGGTGGGG+TGG - chr2_3:45361881-45361900 Msa0293860:intron 65.0%
CTACTCGTCCTGGGTGGGGT+GGG - chr2_3:45361882-45361901 Msa0293860:intron 65.0%
GGGCTAGGAGGAGTGGAGGA+AGG + chr2_3:45361926-45361945 None:intergenic 65.0%
TCCTCCACTCCTCCTAGCCC+TGG - chr2_3:45361926-45361945 Msa0293860:intron 65.0%
ACCAGGGCTAGGAGGAGTGG+AGG + chr2_3:45361930-45361949 None:intergenic 65.0%
ACTTGGCGACCAGGGCTAGG+AGG + chr2_3:45361938-45361957 None:intergenic 65.0%
GGGATCAGGATGCCCCACAG+CGG - chr2_3:45361980-45361999 Msa0293860:intron 65.0%
GGATCAGGATGCCCCACAGC+GGG - chr2_3:45361981-45362000 Msa0293860:intron 65.0%
GATTCCCGCATGTGGACCCC+TGG - chr2_3:45362076-45362095 Msa0293860:intron 65.0%
CGTCCCCGACGTCATCTCGC+CGG + chr2_3:45358900-45358919 None:intergenic 70.0%
GCGAGATGACGTCGGGGACG+AGG - chr2_3:45358900-45358919 Msa0293860:three_prime_UTR 70.0%
CGGGGACGAGGCAACCAACG+TGG - chr2_3:45358912-45358931 Msa0293860:three_prime_UTR 70.0%
!! GGATGAGCGCGGGCTAGGGA+AGG + chr2_3:45361663-45361682 None:intergenic 70.0%
GCATGGGATGAGCGCGGGCT+AGG + chr2_3:45361668-45361687 None:intergenic 70.0%
TACTGCTGCCCACCCCACCC+AGG + chr2_3:45361893-45361912 None:intergenic 70.0%
GCGACCAGGGCTAGGAGGAG+TGG + chr2_3:45361933-45361952 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 45358598 45362962 45358598 ID=Msa0293860;Name=Msa0293860
chr2_3 mRNA 45358598 45362962 45358598 ID=Msa0293860-mRNA-1;Parent=Msa0293860;Name=Msa0293860-mRNA-1;_AED=0.26;_eAED=0.26;_QI=307|1|1|1|1|1|3|531|323
chr2_3 exon 45358598 45359132 45358598 ID=Msa0293860-mRNA-1:exon:14173;Parent=Msa0293860-mRNA-1
chr2_3 exon 45359264 45360015 45359264 ID=Msa0293860-mRNA-1:exon:14172;Parent=Msa0293860-mRNA-1
chr2_3 exon 45362440 45362962 45362440 ID=Msa0293860-mRNA-1:exon:14171;Parent=Msa0293860-mRNA-1
chr2_3 five_prime_UTR 45362656 45362962 45362656 ID=Msa0293860-mRNA-1:five_prime_utr;Parent=Msa0293860-mRNA-1
chr2_3 CDS 45362440 45362655 45362440 ID=Msa0293860-mRNA-1:cds;Parent=Msa0293860-mRNA-1
chr2_3 CDS 45359264 45360015 45359264 ID=Msa0293860-mRNA-1:cds;Parent=Msa0293860-mRNA-1
chr2_3 CDS 45359129 45359132 45359129 ID=Msa0293860-mRNA-1:cds;Parent=Msa0293860-mRNA-1
chr2_3 three_prime_UTR 45358598 45359128 45358598 ID=Msa0293860-mRNA-1:three_prime_utr;Parent=Msa0293860-mRNA-1
Gene Sequence

>Msa0293860

ATGACGTCGGGGACGAGGCAACCAACGTGGAAGGAGAGAGAGAATAACAAGAGGAGAGAGAGGAGAAGAAGAGCGATAGCAGCGAAGATCTTCTCCGGTTTGAGAATGTATGGGAACTATAAGCTTCCGAAACATTGCGATAACAATGAAGTTCTCAAAGCTCTTTGTAATGAAGCTGGTTGGATCGTTGAGCCTGATGGTACAACGTATCGTAAGGGATGCAAGCCTGCGGAACGCATGGATGTGATAGGTGGTTCTGCAATGGGAAGCCCGTGTTCATCTTACCATGTCAGTCCCTGTGCTTCCTACAACCCAAGTCCTGGCTCTTCTTCCTTCCCTAGCCCGCGCTCATCCCATGCTGTAAATCCTAATGGTGATGGAAATTCCCTCATTCCATGGCTCAAAAACCTCTCATCTGGATCATCATCAGCATCCTCTTCCAAGCTTCCCCAGCTATATATTCACACTGGCTCCATCAGTGCTCCTGTCACTCCTCCACTTAGCTCTCCAACTGCTCGATCACCCCAGAGGAAAGCTGACTGGGAGGATCAGTCTACTCGTCCTGGGTGGGGTGGGCAGCAGTACTCTTTCCAGCCTTCCTCCACTCCTCCTAGCCCTGGTCGCCAAGTTCTTGACCCAGATTGGTTTGCTGGGATCAGGATGCCCCACAGCGGGCAAACTTCTCCTACCTTCAGCCTAGTCGCTACTAATCCATTTGGCTTCAGGGAAGAGGTTTTCTGTGGGAGTGATTCCCGCATGTGGACCCCTGGACAAAGTGGGACATGTTCTCCAGCTTTAGCTGCAGGCTCTGATCATAATGCTGACATACCAATGTCTGAAGCTATTTCAGATGAATTTGCCTTTGGAAGCAGTGCAGTTGGTTTGGTGAAGCCTTGGGAAGGAGAGAGGATCCATGAAGATTCTGGATCAGATGATTTAGAGCTCACTCTTGGTACCTCAAAGACCAGGTAA
Protein sequence

>Msa0293860

MTSGTRQPTWKERENNKRRERRRRAIAAKIFSGLRMYGNYKLPKHCDNNEVLKALCNEAGWIVEPDGTTYRKGCKPAERMDVIGGSAMGSPCSSYHVSPCASYNPSPGSSSFPSPRSSHAVNPNGDGNSLIPWLKNLSSGSSSASSSKLPQLYIHTGSISAPVTPPLSSPTARSPQRKADWEDQSTRPGWGGQQYSFQPSSTPPSPGRQVLDPDWFAGIRMPHSGQTSPTFSLVATNPFGFREEVFCGSDSRMWTPGQSGTCSPALAAGSDHNADIPMSEAISDEFAFGSSAVGLVKPWEGERIHEDSGSDDLELTLGTSKTR*