Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256260 | KEH38737.1 | 92.904 | 916 | 63 | 2 | 1 | 914 | 18 | 933 | 0.0 | 1691 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256260 | A0A072VAA8 | 92.904 | 916 | 63 | 2 | 1 | 914 | 18 | 933 | 0.0 | 1691 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0216060 | Msa0256260 | 0.944548 | 1.593822e-103 | -8.615850e-47 |
| Msa0256260 | Msa0295420 | 0.960259 | 2.350259e-118 | -8.615850e-47 |
| Msa0256260 | Msa0388010 | 0.815869 | 7.411923e-52 | -8.615850e-47 |
| Msa0256260 | Msa0388070 | 0.807801 | 4.233111e-50 | -8.615850e-47 |
| Msa0256260 | Msa0527950 | 0.813961 | 1.963941e-51 | -8.615850e-47 |
| Msa0256260 | Msa0717860 | 0.807924 | 3.985287e-50 | -8.615850e-47 |
| Msa0256260 | Msa0758520 | 0.800115 | 1.676914e-48 | -8.615850e-47 |
| Msa0256260 | Msa1027910 | 0.806249 | 9.013813e-50 | -8.615850e-47 |
| Msa0256260 | Msa1030210 | 0.808413 | 3.135025e-50 | -8.615850e-47 |
| Msa0256260 | Msa1084890 | 0.817344 | 3.461643e-52 | -8.615850e-47 |
| Msa0256260 | Msa1120580 | 0.812514 | 4.080078e-51 | -8.615850e-47 |
| Msa0256260 | Msa1157110 | 0.816681 | 4.879137e-52 | -8.615850e-47 |
| Msa0256260 | Msa1390200 | 0.813274 | 2.780986e-51 | -8.615850e-47 |
| Msa0256260 | Msa1395250 | 0.809765 | 1.609608e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256260 | MtrunA17_Chr2g0317661 | 92.413 | 804 | 59 | 2 | 1 | 802 | 5 | 808 | 0.0 | 1464 |
| Msa0256260 | MtrunA17_Chr2g0317651 | 62.595 | 917 | 274 | 17 | 22 | 915 | 24 | 894 | 0.0 | 1023 |
| Msa0256260 | MtrunA17_Chr2g0282201 | 39.462 | 930 | 488 | 29 | 21 | 907 | 35 | 932 | 0.0 | 604 |
| Msa0256260 | MtrunA17_Chr4g0003961 | 24.888 | 671 | 408 | 24 | 291 | 886 | 362 | 1011 | 6.90e-40 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256260 | AT4G21700.1 | 36.573 | 957 | 525 | 19 | 1 | 904 | 20 | 947 | 0.0 | 585 |
| Msa0256260 | AT1G52780.1 | 30.244 | 410 | 239 | 15 | 543 | 911 | 641 | 1044 | 5.21e-43 | 170 |
Find 146 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAACATCATTACAGAAAT+TGG | 0.174944 | 2_2:+50969941 | None:intergenic |
| AAGTGATGTTTCTGAGAAAA+AGG | 0.198537 | 2_2:-50969858 | Msa0256260:CDS |
| ATAGCATAATTGGACAAATT+TGG | 0.207848 | 2_2:-50969412 | Msa0256260:CDS |
| AGTGACTATTGGATTGAAAA+AGG | 0.229449 | 2_2:-50969617 | Msa0256260:CDS |
| CGATAACTATAGTTTGCTTT+TGG | 0.230875 | 2_2:+50969920 | None:intergenic |
| CACTGAATTCCGGTTATATA+AGG | 0.242557 | 2_2:+50968998 | None:intergenic |
| CTTTCAAGCTTGAAGGGTTT+TGG | 0.259324 | 2_2:-50970156 | Msa0256260:CDS |
| CGCATGCCTATGATCTTTAC+AGG | 0.265337 | 2_2:-50968074 | Msa0256260:CDS |
| GTTATCATCTTGAAGTAGTT+TGG | 0.269424 | 2_2:+50969368 | None:intergenic |
| TTGGGATATTGTCATTCCTT+TGG | 0.282244 | 2_2:-50967977 | Msa0256260:CDS |
| TGGGATATTGTCATTCCTTT+GGG | 0.308996 | 2_2:-50967976 | Msa0256260:CDS |
| CAGCAATCCAGAGGCCGTTC+TGG | 0.315792 | 2_2:+50968340 | None:intergenic |
| GAGATGAAGGGAAGCACATT+AGG | 0.318248 | 2_2:+50968585 | None:intergenic |
| TAAGGTTGAATTAGAAAGTA+TGG | 0.318807 | 2_2:+50969016 | None:intergenic |
| AATGGAAGCTACGACATTAA+AGG | 0.322650 | 2_2:-50968801 | Msa0256260:CDS |
| AGCAAACTATAGTTATCGTT+TGG | 0.344477 | 2_2:-50969915 | Msa0256260:CDS |
| TTTCAAATAAAAGTGACTAT+TGG | 0.348512 | 2_2:-50969628 | Msa0256260:CDS |
| CTAATTCAACCTTATATAAC+CGG | 0.351661 | 2_2:-50969007 | Msa0256260:CDS |
| AGCTGTTTGGAGAATGGATA+TGG | 0.353167 | 2_2:-50968685 | Msa0256260:CDS |
| ATCTACTTGCAGCAACGTTT+TGG | 0.356533 | 2_2:-50967931 | Msa0256260:CDS |
| GTGGAATTTGAAATGGTAAC+AGG | 0.366199 | 2_2:+50969101 | None:intergenic |
| GAAGTTTCAGTTTCCATCAT+TGG | 0.366609 | 2_2:-50968832 | Msa0256260:CDS |
| ACTTGATCACCAACAGATAA+AGG | 0.369401 | 2_2:+50969134 | None:intergenic |
| ACATGATAGTAAACTGTGTT+TGG | 0.372736 | 2_2:+50970247 | None:intergenic |
| TGAAGAGTATTTGTTGTTGA+AGG | 0.373226 | 2_2:+50970354 | None:intergenic |
| ATCTTACGGTGGTTTGGTAT+TGG | 0.388222 | 2_2:-50968202 | Msa0256260:CDS |
| ACAAATTAAACACTGAATTC+CGG | 0.391199 | 2_2:+50968988 | None:intergenic |
| AACATCACTAGTTTGATTAG+TGG | 0.393229 | 2_2:-50970019 | Msa0256260:CDS |
| TTTGTAACTTTCAAGCTTGA+AGG | 0.395443 | 2_2:-50970163 | Msa0256260:CDS |
| CCTTTCAAAGACATCATATA+TGG | 0.395688 | 2_2:+50969701 | None:intergenic |
| AACTTTGTGTTTGGATATGT+TGG | 0.396638 | 2_2:-50968471 | Msa0256260:CDS |
| AAAGTTTGTATGGTTGGAAC+AGG | 0.402221 | 2_2:-50970118 | Msa0256260:CDS |
| CATGAAATCTTACGGTGGTT+TGG | 0.402506 | 2_2:-50968208 | Msa0256260:CDS |
| ATCTTCTGGAAAAGTTTGTA+TGG | 0.406589 | 2_2:-50970128 | Msa0256260:CDS |
| GATTGAAATTCCCTTCAGTT+TGG | 0.408596 | 2_2:-50969451 | Msa0256260:CDS |
| TTCTTGACAACCTTGTGTGC+TGG | 0.413293 | 2_2:+50969260 | None:intergenic |
| CACCAAGAGGGAAAGAGTTA+TGG | 0.414969 | 2_2:+50970431 | None:intergenic |
| GTAGTTGCTTGCCATTTCAT+TGG | 0.417487 | 2_2:-50969530 | Msa0256260:CDS |
| ATCCATAACTCTTTCCCTCT+TGG | 0.418294 | 2_2:-50970433 | Msa0256260:CDS |
| AAAACCATAGGAGTTAATAT+TGG | 0.419361 | 2_2:+50969163 | None:intergenic |
| GGAATTAGTTATTCACAAAC+AGG | 0.420602 | 2_2:-50970097 | Msa0256260:CDS |
| TGACGCTGACTTCGAGAACT+TGG | 0.422253 | 2_2:+50970199 | None:intergenic |
| TCTGGAAAAGTTTGTATGGT+TGG | 0.423754 | 2_2:-50970124 | Msa0256260:CDS |
| GGCAATTGATCACTCATTAT+AGG | 0.425370 | 2_2:+50969722 | None:intergenic |
| ACGAGTCCTGTAAAGATCAT+AGG | 0.426060 | 2_2:+50968068 | None:intergenic |
| GTCTGTTGTGGAATTTGAAA+TGG | 0.428495 | 2_2:+50969094 | None:intergenic |
| CATCATGAAAATTGAGATGA+AGG | 0.429482 | 2_2:+50968572 | None:intergenic |
| AAACAGCGATAGAAGCTGTT+TGG | 0.433120 | 2_2:-50968698 | Msa0256260:CDS |
| AGAGAGTTTGAGTTCTGAAA+AGG | 0.435977 | 2_2:-50969990 | Msa0256260:CDS |
| GAGTCCAATATTAACTCCTA+TGG | 0.444229 | 2_2:-50969167 | Msa0256260:CDS |
| TCCGTCTTCTTCAACTAACT+TGG | 0.449556 | 2_2:-50968386 | Msa0256260:CDS |
| ATGAAAGCCAGAACGGCCTC+TGG | 0.451976 | 2_2:-50968347 | Msa0256260:CDS |
| ATATCATAAGAATAAACATC+TGG | 0.452325 | 2_2:+50969218 | None:intergenic |
| AGAACAATGATCTTTGTAAG+AGG | 0.452920 | 2_2:+50970492 | None:intergenic |
| TTAGAAATTTCGAAGATGAC+AGG | 0.454008 | 2_2:-50969343 | Msa0256260:CDS |
| ATTTCATGATGCCAATGAAA+TGG | 0.456483 | 2_2:+50969519 | None:intergenic |
| ATCAGAAGCTGAAGTGCAAA+TGG | 0.460410 | 2_2:-50967839 | Msa0256260:CDS |
| ACTCATGAGTGTACTCTAAT+CGG | 0.461660 | 2_2:+50969768 | None:intergenic |
| AGAGGGTTGTGATGAAGAAA+AGG | 0.464589 | 2_2:+50970510 | None:intergenic |
| GTTTCAACAGAATTCATCTT+GGG | 0.468650 | 2_2:-50968235 | Msa0256260:CDS |
| TACGGTGGTTTGGTATTGGA+TGG | 0.472128 | 2_2:-50968198 | Msa0256260:CDS |
| AATCCGAAAACTACGTTGGT+AGG | 0.475253 | 2_2:-50969590 | Msa0256260:CDS |
| TGATATGAGATTTGATATGT+TGG | 0.477720 | 2_2:-50969201 | Msa0256260:CDS |
| CATTAGGGTGTTTCTTGACA+TGG | 0.479152 | 2_2:+50968601 | None:intergenic |
| ATGATGTCAATTCTCACAAT+GGG | 0.479267 | 2_2:-50968555 | Msa0256260:CDS |
| AGCAGTTCTGAATGAAATAG+TGG | 0.482519 | 2_2:+50970270 | None:intergenic |
| TTTGATCCTTTGAATCTATG+AGG | 0.483046 | 2_2:+50967892 | None:intergenic |
| AGATGAAGGGAAGCACATTA+GGG | 0.483338 | 2_2:+50968586 | None:intergenic |
| CGTTGGTAGGGGAAGGTTGG+TGG | 0.487939 | 2_2:-50969577 | Msa0256260:CDS |
| GCCAAGACGGATGCCATTCA+AGG | 0.488453 | 2_2:+50969493 | None:intergenic |
| AGGATCAAAGGTATATGAAA+AGG | 0.489279 | 2_2:-50967878 | Msa0256260:CDS |
| AGTTTCAACAGAATTCATCT+TGG | 0.491537 | 2_2:-50968236 | Msa0256260:CDS |
| CATGATGTCAATTCTCACAA+TGG | 0.491712 | 2_2:-50968556 | Msa0256260:CDS |
| GGAAAGAGTTATGGATGATG+AGG | 0.492236 | 2_2:+50970440 | None:intergenic |
| TCCTTGAATGGCATCCGTCT+TGG | 0.496853 | 2_2:-50969494 | Msa0256260:CDS |
| CCTCTTGGTGATCAATACTC+AGG | 0.497390 | 2_2:-50970418 | Msa0256260:CDS |
| ACAGGAACCTTGTGTATGAT+TGG | 0.498917 | 2_2:-50968918 | Msa0256260:CDS |
| TTCTTCATTTGCAATTTACT+CGG | 0.501178 | 2_2:-50968721 | Msa0256260:CDS |
| ATTTCTTAACTCTTTCAAGC+TGG | 0.501659 | 2_2:+50969288 | None:intergenic |
| CGCAATCTTAACTCAAAGGC+TGG | 0.504135 | 2_2:-50968891 | Msa0256260:CDS |
| GGGAGTTGACTCTTTGATGA+TGG | 0.505808 | 2_2:+50970468 | None:intergenic |
| GAGAGTTTGAGTTCTGAAAA+GGG | 0.509784 | 2_2:-50969989 | Msa0256260:CDS |
| AATTATGCTCAACTCGGCGA+TGG | 0.510910 | 2_2:-50968045 | Msa0256260:CDS |
| ATCATGAAATCGTCCTTGAA+TGG | 0.513058 | 2_2:-50969506 | Msa0256260:CDS |
| ATCCGAAAACTACGTTGGTA+GGG | 0.513232 | 2_2:-50969589 | Msa0256260:CDS |
| AGAAAACAAGCATAGGTTGA+AGG | 0.515198 | 2_2:-50969663 | Msa0256260:CDS |
| CATCCGTCTTGGCGATTGCT+CGG | 0.515903 | 2_2:-50969483 | Msa0256260:CDS |
| CAGAAGGTACTTATGATTCA+AGG | 0.516498 | 2_2:-50968941 | Msa0256260:CDS |
| CCTCTGGATTGCTGAGAGAA+AGG | 0.518991 | 2_2:-50968331 | Msa0256260:CDS |
| TTGTAACTTTCAAGCTTGAA+GGG | 0.520372 | 2_2:-50970162 | Msa0256260:CDS |
| GATAGAAGCTGTTTGGAGAA+TGG | 0.520712 | 2_2:-50968691 | Msa0256260:CDS |
| CTACGTTGGTAGGGGAAGGT+TGG | 0.520779 | 2_2:-50969580 | Msa0256260:CDS |
| AAGTTAATGAAATAGCTGTA+AGG | 0.521660 | 2_2:-50968440 | Msa0256260:CDS |
| CAATACTCAGGTTACTTCAC+AGG | 0.523091 | 2_2:-50970406 | Msa0256260:CDS |
| ACAAGGTTGTCAAGAACAAA+GGG | 0.531404 | 2_2:-50969253 | Msa0256260:CDS |
| GCATAGGTTGAAGGTTATGA+TGG | 0.533152 | 2_2:-50969654 | Msa0256260:CDS |
| TGGGAGAACATGAAATCTTA+CGG | 0.533397 | 2_2:-50968216 | Msa0256260:CDS |
| AATAATCCAGCTGCATACAA+AGG | 0.536085 | 2_2:+50968291 | None:intergenic |
| ATAATCCAGCTGCATACAAA+GGG | 0.540543 | 2_2:+50968292 | None:intergenic |
| TTGTGTTTGGATATGTTGGA+TGG | 0.542000 | 2_2:-50968467 | Msa0256260:CDS |
| CATGTAAGCAACTTTAGCTA+TGG | 0.542750 | 2_2:-50970229 | Msa0256260:CDS |
| AATGGATATGGAGATTATCA+TGG | 0.548482 | 2_2:-50968673 | Msa0256260:CDS |
| GAACAATGATCTTTGTAAGA+GGG | 0.548742 | 2_2:+50970493 | None:intergenic |
| AATTTCGAAGATGACAGGGT+TGG | 0.552719 | 2_2:-50969338 | Msa0256260:CDS |
| TCCGAAAACTACGTTGGTAG+GGG | 0.555710 | 2_2:-50969588 | Msa0256260:CDS |
| GGTACTTATGATTCAAGGAC+AGG | 0.556525 | 2_2:-50968936 | Msa0256260:CDS |
| CACAAGGTTGTCAAGAACAA+AGG | 0.565650 | 2_2:-50969254 | Msa0256260:CDS |
| TTCCACAACAGACACTCCTA+TGG | 0.566678 | 2_2:-50969084 | Msa0256260:CDS |
| GATATTGTCATTCCTTTGGG+AGG | 0.567628 | 2_2:-50967973 | Msa0256260:CDS |
| TTGCCGCAATCTTAACTCAA+AGG | 0.572037 | 2_2:-50968895 | Msa0256260:CDS |
| TCATAGATTCAAAGGATCAA+AGG | 0.572929 | 2_2:-50967890 | Msa0256260:CDS |
| GTTCTGCCTCATAGATTCAA+AGG | 0.574597 | 2_2:-50967898 | Msa0256260:CDS |
| GTTGGTAGGGGAAGGTTGGT+GGG | 0.583510 | 2_2:-50969576 | Msa0256260:CDS |
| GAAATCATGTCCAGCACACA+AGG | 0.589576 | 2_2:-50969270 | Msa0256260:CDS |
| ATCATGAAAATTGAGATGAA+GGG | 0.595539 | 2_2:+50968573 | None:intergenic |
| AGCTGTAAGGATTATAACAA+TGG | 0.597737 | 2_2:-50968427 | Msa0256260:CDS |
| TAGAAATTTCGAAGATGACA+GGG | 0.600967 | 2_2:-50969342 | Msa0256260:CDS |
| GCTTCTGATTCAGTCACCAC+AGG | 0.601246 | 2_2:+50967853 | None:intergenic |
| CTGAGTATTGATCACCAAGA+GGG | 0.601282 | 2_2:+50970419 | None:intergenic |
| CTTCTAATAGCTCTTGAGAG+TGG | 0.601771 | 2_2:+50969794 | None:intergenic |
| GTTCTCAAGAAAACAAGCAT+AGG | 0.605390 | 2_2:-50969670 | Msa0256260:CDS |
| AGAGTGAAGATTTCAGCAGA+AGG | 0.606308 | 2_2:-50968957 | Msa0256260:CDS |
| TTACCGAGCAATCGCCAAGA+CGG | 0.607355 | 2_2:+50969480 | None:intergenic |
| CACCATAGGAGTGTCTGTTG+TGG | 0.607425 | 2_2:+50969082 | None:intergenic |
| AAAACTACGTTGGTAGGGGA+AGG | 0.612097 | 2_2:-50969584 | Msa0256260:CDS |
| GCTTCGAAATTGAGAACAAG+CGG | 0.617144 | 2_2:+50968522 | None:intergenic |
| AACAAGTTTAGAAATACTTG+TGG | 0.618557 | 2_2:+50968165 | None:intergenic |
| CCATATATGATGTCTTTGAA+AGG | 0.621501 | 2_2:-50969701 | Msa0256260:CDS |
| CCATTGTTGAACATCACCAT+AGG | 0.630256 | 2_2:+50969068 | None:intergenic |
| AAGACTAATGAAAGCCAGAA+CGG | 0.634141 | 2_2:-50968354 | Msa0256260:CDS |
| TTTCAATCCGAAAACTACGT+TGG | 0.634421 | 2_2:-50969594 | Msa0256260:CDS |
| ACCAAGTTAGTTGAAGAAGA+CGG | 0.644238 | 2_2:+50968385 | None:intergenic |
| CAGCCTTTGAGTTAAGATTG+CGG | 0.648649 | 2_2:+50968892 | None:intergenic |
| TACTCAGGTTACTTCACAGG+AGG | 0.658618 | 2_2:-50970403 | Msa0256260:CDS |
| GCAAATAAGATACCTCCCAA+AGG | 0.662067 | 2_2:+50967961 | None:intergenic |
| ACTCGTAATTATGCTCAACT+CGG | 0.677828 | 2_2:-50968051 | Msa0256260:CDS |
| CTGTAAAGATCATAGGCATG+CGG | 0.680972 | 2_2:+50968075 | None:intergenic |
| CCTTTCTCTCAGCAATCCAG+AGG | 0.683130 | 2_2:+50968331 | None:intergenic |
| CCTATGGTGATGTTCAACAA+TGG | 0.683459 | 2_2:-50969068 | Msa0256260:CDS |
| ATTCAAAAGAAAGAAGAACA+TGG | 0.686447 | 2_2:+50970549 | None:intergenic |
| TGGAACACAGTTACGCTCTG+TGG | 0.689056 | 2_2:-50968871 | Msa0256260:CDS |
| GGTATATGAAAAGGTGCCTG+TGG | 0.700967 | 2_2:-50967869 | Msa0256260:CDS |
| CCTGAGTATTGATCACCAAG+AGG | 0.701913 | 2_2:+50970418 | None:intergenic |
| GCGGCAACCAATCATACACA+AGG | 0.708091 | 2_2:+50968911 | None:intergenic |
| GAGAACATGAAATCTTACGG+TGG | 0.722259 | 2_2:-50968213 | Msa0256260:CDS |
| AAGGAAGTATCAAAAGCACG+CGG | 0.756530 | 2_2:-50968782 | Msa0256260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATACTAATAGCATAAT+TGG | - | chr2_2:50968977-50968996 | Msa0256260:CDS | 15.0% |
| !! | TTTCAAATAAAAGTGACTAT+TGG | - | chr2_2:50968771-50968790 | Msa0256260:CDS | 20.0% |
| !! | ATATCATAAGAATAAACATC+TGG | + | chr2_2:50969184-50969203 | None:intergenic | 20.0% |
| !!! | TTTTTGCTGTTATAATTTTG+AGG | + | chr2_2:50969910-50969929 | None:intergenic | 20.0% |
| ! | ATTCAAAAGAAAGAAGAACA+TGG | + | chr2_2:50967853-50967872 | None:intergenic | 25.0% |
| ! | GAACAAAAACTTGATGAATA+TGG | + | chr2_2:50968581-50968600 | None:intergenic | 25.0% |
| !! | TTTTTATTGACCAAACTGAA+GGG | + | chr2_2:50968961-50968980 | None:intergenic | 25.0% |
| !!! | TTTTTTATTGACCAAACTGA+AGG | + | chr2_2:50968962-50968981 | None:intergenic | 25.0% |
| ! | ATAGCATAATTGGACAAATT+TGG | - | chr2_2:50968987-50969006 | Msa0256260:CDS | 25.0% |
| ! | TGATATGAGATTTGATATGT+TGG | - | chr2_2:50969198-50969217 | Msa0256260:CDS | 25.0% |
| ! | AAAACCATAGGAGTTAATAT+TGG | + | chr2_2:50969239-50969258 | None:intergenic | 25.0% |
| ! | TAAGGTTGAATTAGAAAGTA+TGG | + | chr2_2:50969386-50969405 | None:intergenic | 25.0% |
| ! | CTAATTCAACCTTATATAAC+CGG | - | chr2_2:50969392-50969411 | Msa0256260:CDS | 25.0% |
| ! | ACAAATTAAACACTGAATTC+CGG | + | chr2_2:50969414-50969433 | None:intergenic | 25.0% |
| !!! | TCTAAACTTTTGAAGTAAAG+AGG | + | chr2_2:50969655-50969674 | None:intergenic | 25.0% |
| ! | TTCTTCATTTGCAATTTACT+CGG | - | chr2_2:50969678-50969697 | Msa0256260:CDS | 25.0% |
| ! | ATCATGAAAATTGAGATGAA+GGG | + | chr2_2:50969829-50969848 | None:intergenic | 25.0% |
| ! | AAGTTAATGAAATAGCTGTA+AGG | - | chr2_2:50969959-50969978 | Msa0256260:CDS | 25.0% |
| ! | AACAAGTTTAGAAATACTTG+TGG | + | chr2_2:50970237-50970256 | None:intergenic | 25.0% |
| !! | CTTTCATGTTCATTTTACTT+TGG | - | chr2_2:50970279-50970298 | Msa0256260:CDS | 25.0% |
| !! | AGATTTTTACTCAACTACTT+GGG | - | chr2_2:50970404-50970423 | Msa0256260:CDS | 25.0% |
| GAACAATGATCTTTGTAAGA+GGG | + | chr2_2:50967909-50967928 | None:intergenic | 30.0% | |
| AGAACAATGATCTTTGTAAG+AGG | + | chr2_2:50967910-50967929 | None:intergenic | 30.0% | |
| ! | TTATGGATGATGAGGTTTTT+GGG | + | chr2_2:50967954-50967973 | None:intergenic | 30.0% |
| !! | TGAAGAGTATTTGTTGTTGA+AGG | + | chr2_2:50968048-50968067 | None:intergenic | 30.0% |
| ! | CATGCATTTTTATGTGTCTA+AGG | + | chr2_2:50968076-50968095 | None:intergenic | 30.0% |
| ACATGATAGTAAACTGTGTT+TGG | + | chr2_2:50968155-50968174 | None:intergenic | 30.0% | |
| TTTGTAACTTTCAAGCTTGA+AGG | - | chr2_2:50968236-50968255 | Msa0256260:CDS | 30.0% | |
| TTGTAACTTTCAAGCTTGAA+GGG | - | chr2_2:50968237-50968256 | Msa0256260:CDS | 30.0% | |
| ! | ATCTTCTGGAAAAGTTTGTA+TGG | - | chr2_2:50968271-50968290 | Msa0256260:CDS | 30.0% |
| GGAATTAGTTATTCACAAAC+AGG | - | chr2_2:50968302-50968321 | Msa0256260:CDS | 30.0% | |
| ! | AACATCACTAGTTTGATTAG+TGG | - | chr2_2:50968380-50968399 | Msa0256260:CDS | 30.0% |
| GGAAACATCATTACAGAAAT+TGG | + | chr2_2:50968461-50968480 | None:intergenic | 30.0% | |
| !!! | CGATAACTATAGTTTGCTTT+TGG | + | chr2_2:50968482-50968501 | None:intergenic | 30.0% |
| AGCAAACTATAGTTATCGTT+TGG | - | chr2_2:50968484-50968503 | Msa0256260:CDS | 30.0% | |
| ! | AAGTGATGTTTCTGAGAAAA+AGG | - | chr2_2:50968541-50968560 | Msa0256260:CDS | 30.0% |
| ! | AGTGATGTTTCTGAGAAAAA+GGG | - | chr2_2:50968542-50968561 | Msa0256260:CDS | 30.0% |
| CCTTTCAAAGACATCATATA+TGG | + | chr2_2:50968701-50968720 | None:intergenic | 30.0% | |
| CCATATATGATGTCTTTGAA+AGG | - | chr2_2:50968698-50968717 | Msa0256260:CDS | 30.0% | |
| AGTGACTATTGGATTGAAAA+AGG | - | chr2_2:50968782-50968801 | Msa0256260:CDS | 30.0% | |
| ATTTCATGATGCCAATGAAA+TGG | + | chr2_2:50968883-50968902 | None:intergenic | 30.0% | |
| GTTATCATCTTGAAGTAGTT+TGG | + | chr2_2:50969034-50969053 | None:intergenic | 30.0% | |
| TTAGAAATTTCGAAGATGAC+AGG | - | chr2_2:50969056-50969075 | Msa0256260:CDS | 30.0% | |
| TAGAAATTTCGAAGATGACA+GGG | - | chr2_2:50969057-50969076 | Msa0256260:CDS | 30.0% | |
| ATTTCTTAACTCTTTCAAGC+TGG | + | chr2_2:50969114-50969133 | None:intergenic | 30.0% | |
| AATGGATATGGAGATTATCA+TGG | - | chr2_2:50969726-50969745 | Msa0256260:CDS | 30.0% | |
| CATCATGAAAATTGAGATGA+AGG | + | chr2_2:50969830-50969849 | None:intergenic | 30.0% | |
| ATGATGTCAATTCTCACAAT+GGG | - | chr2_2:50969844-50969863 | Msa0256260:CDS | 30.0% | |
| AACAGCAAAAACTTTGTGTT+TGG | - | chr2_2:50969919-50969938 | Msa0256260:CDS | 30.0% | |
| AACTTTGTGTTTGGATATGT+TGG | - | chr2_2:50969928-50969947 | Msa0256260:CDS | 30.0% | |
| AGCTGTAAGGATTATAACAA+TGG | - | chr2_2:50969972-50969991 | Msa0256260:CDS | 30.0% | |
| AGTTTCAACAGAATTCATCT+TGG | - | chr2_2:50970163-50970182 | Msa0256260:CDS | 30.0% | |
| GTTTCAACAGAATTCATCTT+GGG | - | chr2_2:50970164-50970183 | Msa0256260:CDS | 30.0% | |
| GTAAAAATCTGCATTAGGAT+TGG | + | chr2_2:50970394-50970413 | None:intergenic | 30.0% | |
| GTTGAGTAAAAATCTGCATT+AGG | + | chr2_2:50970399-50970418 | None:intergenic | 30.0% | |
| ! | CAGATTTTTACTCAACTACT+TGG | - | chr2_2:50970403-50970422 | Msa0256260:CDS | 30.0% |
| TTTGATCCTTTGAATCTATG+AGG | + | chr2_2:50970510-50970529 | None:intergenic | 30.0% | |
| TCATAGATTCAAAGGATCAA+AGG | - | chr2_2:50970509-50970528 | Msa0256260:CDS | 30.0% | |
| ! | AGGATCAAAGGTATATGAAA+AGG | - | chr2_2:50970521-50970540 | Msa0256260:CDS | 30.0% |
| ! | GTTATGGATGATGAGGTTTT+TGG | + | chr2_2:50967955-50967974 | None:intergenic | 35.0% |
| !! | AGCAGTTCTGAATGAAATAG+TGG | + | chr2_2:50968132-50968151 | None:intergenic | 35.0% |
| CATGTAAGCAACTTTAGCTA+TGG | - | chr2_2:50968170-50968189 | Msa0256260:CDS | 35.0% | |
| TCTGGAAAAGTTTGTATGGT+TGG | - | chr2_2:50968275-50968294 | Msa0256260:CDS | 35.0% | |
| AAAGTTTGTATGGTTGGAAC+AGG | - | chr2_2:50968281-50968300 | Msa0256260:CDS | 35.0% | |
| !! | AGAGAGTTTGAGTTCTGAAA+AGG | - | chr2_2:50968409-50968428 | Msa0256260:CDS | 35.0% |
| !! | GAGAGTTTGAGTTCTGAAAA+GGG | - | chr2_2:50968410-50968429 | Msa0256260:CDS | 35.0% |
| ACTCATGAGTGTACTCTAAT+CGG | + | chr2_2:50968634-50968653 | None:intergenic | 35.0% | |
| GGCAATTGATCACTCATTAT+AGG | + | chr2_2:50968680-50968699 | None:intergenic | 35.0% | |
| GTTCTCAAGAAAACAAGCAT+AGG | - | chr2_2:50968729-50968748 | Msa0256260:CDS | 35.0% | |
| ! | AGAAAACAAGCATAGGTTGA+AGG | - | chr2_2:50968736-50968755 | Msa0256260:CDS | 35.0% |
| TTTCAATCCGAAAACTACGT+TGG | - | chr2_2:50968805-50968824 | Msa0256260:CDS | 35.0% | |
| ATCATGAAATCGTCCTTGAA+TGG | - | chr2_2:50968893-50968912 | Msa0256260:CDS | 35.0% | |
| GATTGAAATTCCCTTCAGTT+TGG | - | chr2_2:50968948-50968967 | Msa0256260:CDS | 35.0% | |
| ACAAGGTTGTCAAGAACAAA+GGG | - | chr2_2:50969146-50969165 | Msa0256260:CDS | 35.0% | |
| GAGTCCAATATTAACTCCTA+TGG | - | chr2_2:50969232-50969251 | Msa0256260:CDS | 35.0% | |
| TAAAGGAGCTGAAAAACCAT+AGG | + | chr2_2:50969251-50969270 | None:intergenic | 35.0% | |
| ! | TTTTCAGCTCCTTTATCTGT+TGG | - | chr2_2:50969256-50969275 | Msa0256260:CDS | 35.0% |
| ACTTGATCACCAACAGATAA+AGG | + | chr2_2:50969268-50969287 | None:intergenic | 35.0% | |
| ! | GTGGAATTTGAAATGGTAAC+AGG | + | chr2_2:50969301-50969320 | None:intergenic | 35.0% |
| GTCTGTTGTGGAATTTGAAA+TGG | + | chr2_2:50969308-50969327 | None:intergenic | 35.0% | |
| CACTGAATTCCGGTTATATA+AGG | + | chr2_2:50969404-50969423 | None:intergenic | 35.0% | |
| !! | CAGAAGGTACTTATGATTCA+AGG | - | chr2_2:50969458-50969477 | Msa0256260:CDS | 35.0% |
| GAAGTTTCAGTTTCCATCAT+TGG | - | chr2_2:50969567-50969586 | Msa0256260:CDS | 35.0% | |
| !!! | CCATTTTTTGCATCCAATGA+TGG | + | chr2_2:50969583-50969602 | None:intergenic | 35.0% |
| CCATCATTGGATGCAAAAAA+TGG | - | chr2_2:50969580-50969599 | Msa0256260:CDS | 35.0% | |
| AATGGAAGCTACGACATTAA+AGG | - | chr2_2:50969598-50969617 | Msa0256260:CDS | 35.0% | |
| CATGATGTCAATTCTCACAA+TGG | - | chr2_2:50969843-50969862 | Msa0256260:CDS | 35.0% | |
| TTGTGTTTGGATATGTTGGA+TGG | - | chr2_2:50969932-50969951 | Msa0256260:CDS | 35.0% | |
| ACCAAGTTAGTTGAAGAAGA+CGG | + | chr2_2:50970017-50970036 | None:intergenic | 35.0% | |
| AAGACTAATGAAAGCCAGAA+CGG | - | chr2_2:50970045-50970064 | Msa0256260:CDS | 35.0% | |
| ATAATCCAGCTGCATACAAA+GGG | + | chr2_2:50970110-50970129 | None:intergenic | 35.0% | |
| AATAATCCAGCTGCATACAA+AGG | + | chr2_2:50970111-50970130 | None:intergenic | 35.0% | |
| TGGGAGAACATGAAATCTTA+CGG | - | chr2_2:50970183-50970202 | Msa0256260:CDS | 35.0% | |
| ACTCGTAATTATGCTCAACT+CGG | - | chr2_2:50970348-50970367 | Msa0256260:CDS | 35.0% | |
| TTGGGATATTGTCATTCCTT+TGG | - | chr2_2:50970422-50970441 | Msa0256260:CDS | 35.0% | |
| TGGGATATTGTCATTCCTTT+GGG | - | chr2_2:50970423-50970442 | Msa0256260:CDS | 35.0% | |
| AGAGGGTTGTGATGAAGAAA+AGG | + | chr2_2:50967892-50967911 | None:intergenic | 40.0% | |
| GGAAAGAGTTATGGATGATG+AGG | + | chr2_2:50967962-50967981 | None:intergenic | 40.0% | |
| ATCCATAACTCTTTCCCTCT+TGG | - | chr2_2:50967966-50967985 | Msa0256260:CDS | 40.0% | |
| !! | CTGAGTATTGATCACCAAGA+GGG | + | chr2_2:50967983-50968002 | None:intergenic | 40.0% |
| CAATACTCAGGTTACTTCAC+AGG | - | chr2_2:50967993-50968012 | Msa0256260:CDS | 40.0% | |
| ! | CTTTCAAGCTTGAAGGGTTT+TGG | - | chr2_2:50968243-50968262 | Msa0256260:CDS | 40.0% |
| !! | GGGTTTTGGTCAAAATCTTC+TGG | - | chr2_2:50968257-50968276 | Msa0256260:CDS | 40.0% |
| CTTCTAATAGCTCTTGAGAG+TGG | + | chr2_2:50968608-50968627 | None:intergenic | 40.0% | |
| ! | GCATAGGTTGAAGGTTATGA+TGG | - | chr2_2:50968745-50968764 | Msa0256260:CDS | 40.0% |
| AATCCGAAAACTACGTTGGT+AGG | - | chr2_2:50968809-50968828 | Msa0256260:CDS | 40.0% | |
| ATCCGAAAACTACGTTGGTA+GGG | - | chr2_2:50968810-50968829 | Msa0256260:CDS | 40.0% | |
| ! | GTAGTTGCTTGCCATTTCAT+TGG | - | chr2_2:50968869-50968888 | Msa0256260:CDS | 40.0% |
| AATTTCGAAGATGACAGGGT+TGG | - | chr2_2:50969061-50969080 | Msa0256260:CDS | 40.0% | |
| CACAAGGTTGTCAAGAACAA+AGG | - | chr2_2:50969145-50969164 | Msa0256260:CDS | 40.0% | |
| CCATTGTTGAACATCACCAT+AGG | + | chr2_2:50969334-50969353 | None:intergenic | 40.0% | |
| ! | CCTATGGTGATGTTCAACAA+TGG | - | chr2_2:50969331-50969350 | Msa0256260:CDS | 40.0% |
| AGAGTGAAGATTTCAGCAGA+AGG | - | chr2_2:50969442-50969461 | Msa0256260:CDS | 40.0% | |
| GGTACTTATGATTCAAGGAC+AGG | - | chr2_2:50969463-50969482 | Msa0256260:CDS | 40.0% | |
| ACAGGAACCTTGTGTATGAT+TGG | - | chr2_2:50969481-50969500 | Msa0256260:CDS | 40.0% | |
| TTGCCGCAATCTTAACTCAA+AGG | - | chr2_2:50969504-50969523 | Msa0256260:CDS | 40.0% | |
| ! | CAGCCTTTGAGTTAAGATTG+CGG | + | chr2_2:50969510-50969529 | None:intergenic | 40.0% |
| !! | AAGGAAGTATCAAAAGCACG+CGG | - | chr2_2:50969617-50969636 | Msa0256260:CDS | 40.0% |
| AAACAGCGATAGAAGCTGTT+TGG | - | chr2_2:50969701-50969720 | Msa0256260:CDS | 40.0% | |
| GATAGAAGCTGTTTGGAGAA+TGG | - | chr2_2:50969708-50969727 | Msa0256260:CDS | 40.0% | |
| AGCTGTTTGGAGAATGGATA+TGG | - | chr2_2:50969714-50969733 | Msa0256260:CDS | 40.0% | |
| ! | ACTCTAGCATGTGTTTTCGT+CGG | - | chr2_2:50969763-50969782 | Msa0256260:CDS | 40.0% |
| ! | CATTAGGGTGTTTCTTGACA+TGG | + | chr2_2:50969801-50969820 | None:intergenic | 40.0% |
| ! | AGATGAAGGGAAGCACATTA+GGG | + | chr2_2:50969816-50969835 | None:intergenic | 40.0% |
| GCTTCGAAATTGAGAACAAG+CGG | + | chr2_2:50969880-50969899 | None:intergenic | 40.0% | |
| TCCGTCTTCTTCAACTAACT+TGG | - | chr2_2:50970013-50970032 | Msa0256260:CDS | 40.0% | |
| ! | ATTTTCCCTTTGTATGCAGC+TGG | - | chr2_2:50970102-50970121 | Msa0256260:CDS | 40.0% |
| GAGAACATGAAATCTTACGG+TGG | - | chr2_2:50970186-50970205 | Msa0256260:CDS | 40.0% | |
| CATGAAATCTTACGGTGGTT+TGG | - | chr2_2:50970191-50970210 | Msa0256260:CDS | 40.0% | |
| !! | ATCTTACGGTGGTTTGGTAT+TGG | - | chr2_2:50970197-50970216 | Msa0256260:CDS | 40.0% |
| CTGTAAAGATCATAGGCATG+CGG | + | chr2_2:50970327-50970346 | None:intergenic | 40.0% | |
| ACGAGTCCTGTAAAGATCAT+AGG | + | chr2_2:50970334-50970353 | None:intergenic | 40.0% | |
| GATATTGTCATTCCTTTGGG+AGG | - | chr2_2:50970426-50970445 | Msa0256260:CDS | 40.0% | |
| GCAAATAAGATACCTCCCAA+AGG | + | chr2_2:50970441-50970460 | None:intergenic | 40.0% | |
| ! | ATCTACTTGCAGCAACGTTT+TGG | - | chr2_2:50970468-50970487 | Msa0256260:CDS | 40.0% |
| GTTCTGCCTCATAGATTCAA+AGG | - | chr2_2:50970501-50970520 | Msa0256260:CDS | 40.0% | |
| ATCAGAAGCTGAAGTGCAAA+TGG | - | chr2_2:50970560-50970579 | Msa0256260:CDS | 40.0% | |
| ! | GGGAGTTGACTCTTTGATGA+TGG | + | chr2_2:50967934-50967953 | None:intergenic | 45.0% |
| CACCAAGAGGGAAAGAGTTA+TGG | + | chr2_2:50967971-50967990 | None:intergenic | 45.0% | |
| !! | CCTGAGTATTGATCACCAAG+AGG | + | chr2_2:50967984-50968003 | None:intergenic | 45.0% |
| ! | CCTCTTGGTGATCAATACTC+AGG | - | chr2_2:50967981-50968000 | Msa0256260:CDS | 45.0% |
| TACTCAGGTTACTTCACAGG+AGG | - | chr2_2:50967996-50968015 | Msa0256260:CDS | 45.0% | |
| ! | TCCGAAAACTACGTTGGTAG+GGG | - | chr2_2:50968811-50968830 | Msa0256260:CDS | 45.0% |
| ! | TCCCCTACCAACGTAGTTTT+CGG | + | chr2_2:50968815-50968834 | None:intergenic | 45.0% |
| ! | AAAACTACGTTGGTAGGGGA+AGG | - | chr2_2:50968815-50968834 | Msa0256260:CDS | 45.0% |
| GAAATCATGTCCAGCACACA+AGG | - | chr2_2:50969129-50969148 | Msa0256260:CDS | 45.0% | |
| TTCTTGACAACCTTGTGTGC+TGG | + | chr2_2:50969142-50969161 | None:intergenic | 45.0% | |
| TTCCACAACAGACACTCCTA+TGG | - | chr2_2:50969315-50969334 | Msa0256260:CDS | 45.0% | |
| CGCAATCTTAACTCAAAGGC+TGG | - | chr2_2:50969508-50969527 | Msa0256260:CDS | 45.0% | |
| ! | GAGATGAAGGGAAGCACATT+AGG | + | chr2_2:50969817-50969836 | None:intergenic | 45.0% |
| !! | TACGGTGGTTTGGTATTGGA+TGG | - | chr2_2:50970201-50970220 | Msa0256260:CDS | 45.0% |
| CGCATGCCTATGATCTTTAC+AGG | - | chr2_2:50970325-50970344 | Msa0256260:CDS | 45.0% | |
| AATTATGCTCAACTCGGCGA+TGG | - | chr2_2:50970354-50970373 | Msa0256260:CDS | 45.0% | |
| !! | GGTATATGAAAAGGTGCCTG+TGG | - | chr2_2:50970530-50970549 | Msa0256260:CDS | 45.0% |
| !! | TGACGCTGACTTCGAGAACT+TGG | + | chr2_2:50968203-50968222 | None:intergenic | 50.0% |
| TCCTTGAATGGCATCCGTCT+TGG | - | chr2_2:50968905-50968924 | Msa0256260:CDS | 50.0% | |
| TTACCGAGCAATCGCCAAGA+CGG | + | chr2_2:50968922-50968941 | None:intergenic | 50.0% | |
| !! | CACCATAGGAGTGTCTGTTG+TGG | + | chr2_2:50969320-50969339 | None:intergenic | 50.0% |
| GCGGCAACCAATCATACACA+AGG | + | chr2_2:50969491-50969510 | None:intergenic | 50.0% | |
| TGGAACACAGTTACGCTCTG+TGG | - | chr2_2:50969528-50969547 | Msa0256260:CDS | 50.0% | |
| CCTTTCTCTCAGCAATCCAG+AGG | + | chr2_2:50970071-50970090 | None:intergenic | 50.0% | |
| CCTCTGGATTGCTGAGAGAA+AGG | - | chr2_2:50970068-50970087 | Msa0256260:CDS | 50.0% | |
| GCTTCTGATTCAGTCACCAC+AGG | + | chr2_2:50970549-50970568 | None:intergenic | 50.0% | |
| ! | CTACGTTGGTAGGGGAAGGT+TGG | - | chr2_2:50968819-50968838 | Msa0256260:CDS | 55.0% |
| ! | GTTGGTAGGGGAAGGTTGGT+GGG | - | chr2_2:50968823-50968842 | Msa0256260:CDS | 55.0% |
| GCCAAGACGGATGCCATTCA+AGG | + | chr2_2:50968909-50968928 | None:intergenic | 55.0% | |
| CATCCGTCTTGGCGATTGCT+CGG | - | chr2_2:50968916-50968935 | Msa0256260:CDS | 55.0% | |
| ATGAAAGCCAGAACGGCCTC+TGG | - | chr2_2:50970052-50970071 | Msa0256260:CDS | 55.0% | |
| ! | CGTTGGTAGGGGAAGGTTGG+TGG | - | chr2_2:50968822-50968841 | Msa0256260:CDS | 60.0% |
| CAGCAATCCAGAGGCCGTTC+TGG | + | chr2_2:50970062-50970081 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 50967834 | 50970587 | 50967834 | ID=Msa0256260;Name=Msa0256260 |
| chr2_2 | mRNA | 50967834 | 50970587 | 50967834 | ID=Msa0256260-mRNA-1;Parent=Msa0256260;Name=Msa0256260-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|917 |
| chr2_2 | exon | 50967834 | 50970587 | 50967834 | ID=Msa0256260-mRNA-1:exon:15354;Parent=Msa0256260-mRNA-1 |
| chr2_2 | CDS | 50967834 | 50970587 | 50967834 | ID=Msa0256260-mRNA-1:cds;Parent=Msa0256260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
