Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295420 | KEH38737.1 | 92.795 | 916 | 64 | 2 | 1 | 914 | 18 | 933 | 0.0 | 1689 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051960 | Msa0295420 | 0.800722 | 1.261197e-48 | -8.615850e-47 |
| Msa0101960 | Msa0295420 | 0.802216 | 6.232676e-49 | -8.615850e-47 |
| Msa0171330 | Msa0295420 | 0.812360 | 4.408740e-51 | -8.615850e-47 |
| Msa0216060 | Msa0295420 | 0.950319 | 2.104581e-108 | -8.615850e-47 |
| Msa0256260 | Msa0295420 | 0.960259 | 2.350259e-118 | -8.615850e-47 |
| Msa0295420 | Msa0296900 | 0.801461 | 8.905230e-49 | -8.615850e-47 |
| Msa0295420 | Msa0335080 | 0.807766 | 4.304752e-50 | -8.615850e-47 |
| Msa0295420 | Msa0388010 | 0.806603 | 7.590487e-50 | -8.615850e-47 |
| Msa0295420 | Msa0442860 | 0.806408 | 8.348099e-50 | -8.615850e-47 |
| Msa0295420 | Msa0527950 | 0.807551 | 4.782393e-50 | -8.615850e-47 |
| Msa0295420 | Msa0576900 | 0.833082 | 6.540250e-56 | -8.615850e-47 |
| Msa0295420 | Msa0717860 | 0.802169 | 6.373451e-49 | -8.615850e-47 |
| Msa0295420 | Msa1157110 | 0.800992 | 1.110944e-48 | -8.615850e-47 |
| Msa0295420 | Msa1175100 | 0.804959 | 1.681355e-49 | -8.615850e-47 |
| Msa0295420 | Msa1306830 | 0.804541 | 2.056039e-49 | -8.615850e-47 |
| Msa0295420 | Msa1306960 | 0.808198 | 3.484057e-50 | -8.615850e-47 |
| Msa0295420 | Msa1315480 | 0.822733 | 2.022419e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295420 | MtrunA17_Chr2g0317661 | 92.289 | 804 | 60 | 2 | 1 | 802 | 5 | 808 | 0.0 | 1460 |
| Msa0295420 | MtrunA17_Chr2g0317651 | 62.704 | 917 | 273 | 18 | 22 | 915 | 24 | 894 | 0.0 | 1024 |
| Msa0295420 | MtrunA17_Chr2g0282201 | 39.570 | 930 | 487 | 29 | 21 | 907 | 35 | 932 | 0.0 | 604 |
| Msa0295420 | MtrunA17_Chr4g0003961 | 24.888 | 671 | 408 | 24 | 291 | 886 | 362 | 1011 | 7.60e-40 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295420 | AT4G21700.1 | 36.364 | 957 | 527 | 19 | 1 | 904 | 20 | 947 | 0.0 | 582 |
| Msa0295420 | AT1G52780.1 | 30.244 | 410 | 239 | 15 | 543 | 911 | 641 | 1044 | 4.85e-43 | 170 |
Find 145 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAACATCATTAGAGAAAT+TGG | 0.186922 | 2_3:+48007677 | None:intergenic |
| AAGTGATGTTTCTGAGAAAA+AGG | 0.197771 | 2_3:-48007594 | Msa0295420:CDS |
| ATAGCATAATTGGACAAATT+TGG | 0.207848 | 2_3:-48007148 | Msa0295420:CDS |
| AGTGACTATTGGATTGAAAA+AGG | 0.229449 | 2_3:-48007353 | Msa0295420:CDS |
| CGATAACTATAGTTTGCTTT+TGG | 0.230875 | 2_3:+48007656 | None:intergenic |
| CACTGAATTCCGGTTATATA+AGG | 0.242557 | 2_3:+48006734 | None:intergenic |
| CTTTCAAGCTTGAAGGGTTT+TGG | 0.259324 | 2_3:-48007892 | Msa0295420:CDS |
| CGCATGCCTATGATCTTTAC+AGG | 0.265337 | 2_3:-48005810 | Msa0295420:CDS |
| GTTATCATCTTGAAGTAGTT+TGG | 0.269424 | 2_3:+48007104 | None:intergenic |
| TTGGGATATTGTCATTCCTT+TGG | 0.282244 | 2_3:-48005713 | Msa0295420:CDS |
| TGGGATATTGTCATTCCTTT+GGG | 0.308996 | 2_3:-48005712 | Msa0295420:CDS |
| CAGCAATCCAGAGGCCGTTC+TGG | 0.315792 | 2_3:+48006076 | None:intergenic |
| GAGATGAAGGGAAGCACATT+AGG | 0.318248 | 2_3:+48006321 | None:intergenic |
| TAAGGTTGAATTAGAAAGTA+TGG | 0.318807 | 2_3:+48006752 | None:intergenic |
| AATGGAAGCTACGACATTAA+AGG | 0.322650 | 2_3:-48006537 | Msa0295420:CDS |
| AGCAAACTATAGTTATCGTT+TGG | 0.344477 | 2_3:-48007651 | Msa0295420:CDS |
| TTTCAAATAAAAGTGACTAT+TGG | 0.348512 | 2_3:-48007364 | Msa0295420:CDS |
| CTAATTCAACCTTATATAAC+CGG | 0.351661 | 2_3:-48006743 | Msa0295420:CDS |
| AGCTGTTTGGAGAATGGATA+TGG | 0.353167 | 2_3:-48006421 | Msa0295420:CDS |
| ATCTACTTGCAGCAACGTTT+TGG | 0.356533 | 2_3:-48005667 | Msa0295420:CDS |
| GTGGAATTTGAAATGGTAAC+AGG | 0.366199 | 2_3:+48006837 | None:intergenic |
| GAAGTTTCAGTTTCCATCAT+TGG | 0.366609 | 2_3:-48006568 | Msa0295420:CDS |
| ACTTGATCACCAACAGATAA+AGG | 0.369401 | 2_3:+48006870 | None:intergenic |
| ACATGATAGTAAACTGTGTT+TGG | 0.372736 | 2_3:+48007983 | None:intergenic |
| ATCTTACGGTGGTTTGGTAT+TGG | 0.388222 | 2_3:-48005938 | Msa0295420:CDS |
| ACAAATTAAACACTGAATTC+CGG | 0.391199 | 2_3:+48006724 | None:intergenic |
| AACATCACTAGTTTGATTAG+TGG | 0.393229 | 2_3:-48007755 | Msa0295420:CDS |
| TTTGTAACTTTCAAGCTTGA+AGG | 0.395443 | 2_3:-48007899 | Msa0295420:CDS |
| CCTTTCAAAGACATCATATA+TGG | 0.395688 | 2_3:+48007437 | None:intergenic |
| AACTTTGTGTTTGGATATGT+TGG | 0.396638 | 2_3:-48006207 | Msa0295420:CDS |
| AAAGTTTGTATGGTTGGAAC+AGG | 0.402221 | 2_3:-48007854 | Msa0295420:CDS |
| CATGAAATCTTACGGTGGTT+TGG | 0.402506 | 2_3:-48005944 | Msa0295420:CDS |
| ATCTTCTGGAAAAGTTTGTA+TGG | 0.406589 | 2_3:-48007864 | Msa0295420:CDS |
| GATTGAAATTCCCTTCAGTT+TGG | 0.408596 | 2_3:-48007187 | Msa0295420:CDS |
| TTCTTGACAACCTTGTGTGC+TGG | 0.413293 | 2_3:+48006996 | None:intergenic |
| CACCAAGAGGGAAAGAGTTA+TGG | 0.414969 | 2_3:+48008167 | None:intergenic |
| GTAGTTGCTTGCCATTTCAT+TGG | 0.417487 | 2_3:-48007266 | Msa0295420:CDS |
| ATCCATAACTCTTTCCCTCT+TGG | 0.418294 | 2_3:-48008169 | Msa0295420:CDS |
| AAAACCATAGGAGTTAATAT+TGG | 0.419361 | 2_3:+48006899 | None:intergenic |
| GGAATTAGTTATTCACAAAC+AGG | 0.420602 | 2_3:-48007833 | Msa0295420:CDS |
| TGACGCTGACTTCGAGAACT+TGG | 0.422253 | 2_3:+48007935 | None:intergenic |
| TCTGGAAAAGTTTGTATGGT+TGG | 0.423754 | 2_3:-48007860 | Msa0295420:CDS |
| GGCAATTGATCACTCATTAT+AGG | 0.425370 | 2_3:+48007458 | None:intergenic |
| ACGAGTCCTGTAAAGATCAT+AGG | 0.426060 | 2_3:+48005804 | None:intergenic |
| GTCTGTTGTGGAATTTGAAA+TGG | 0.428495 | 2_3:+48006830 | None:intergenic |
| CATCATGAAAATTGAGATGA+AGG | 0.429482 | 2_3:+48006308 | None:intergenic |
| AAACAGCGATAGAAGCTGTT+TGG | 0.433120 | 2_3:-48006434 | Msa0295420:CDS |
| AGAGAGTTTGAGTTCTGAAA+AGG | 0.435977 | 2_3:-48007726 | Msa0295420:CDS |
| GAGTCCAATATTAACTCCTA+TGG | 0.444229 | 2_3:-48006903 | Msa0295420:CDS |
| TCCGTCTTCTTCAACTAACT+TGG | 0.449556 | 2_3:-48006122 | Msa0295420:CDS |
| ATGAAAGCCAGAACGGCCTC+TGG | 0.451976 | 2_3:-48006083 | Msa0295420:CDS |
| ATATCATAAGAATAAACATC+TGG | 0.452325 | 2_3:+48006954 | None:intergenic |
| AGAACAATGATCTTTGTAAG+AGG | 0.452920 | 2_3:+48008228 | None:intergenic |
| TTAGAAATTTCGAAGATGAC+AGG | 0.454008 | 2_3:-48007079 | Msa0295420:CDS |
| ATTTCATGATGCCAATGAAA+TGG | 0.456483 | 2_3:+48007255 | None:intergenic |
| ATCAGAAGCTGAAGTGCAAA+TGG | 0.460410 | 2_3:-48005575 | Msa0295420:CDS |
| ACTCATGAGTGTACTCTAAT+CGG | 0.461660 | 2_3:+48007504 | None:intergenic |
| AGAGGGTTGTGATGAAGAAA+AGG | 0.464589 | 2_3:+48008246 | None:intergenic |
| GTTTCAACAGAATTCATCTT+GGG | 0.468650 | 2_3:-48005971 | Msa0295420:CDS |
| TACGGTGGTTTGGTATTGGA+TGG | 0.472128 | 2_3:-48005934 | Msa0295420:CDS |
| AATCCGAAAACTACGTTGGT+AGG | 0.475253 | 2_3:-48007326 | Msa0295420:CDS |
| TGATATGAGATTTGATATGT+TGG | 0.477720 | 2_3:-48006937 | Msa0295420:CDS |
| CATTAGGGTGTTTCTTGACA+TGG | 0.479152 | 2_3:+48006337 | None:intergenic |
| ATGATGTCAATTCTCACAAT+GGG | 0.479267 | 2_3:-48006291 | Msa0295420:CDS |
| AGCAGTTCTGAATGAAATAG+TGG | 0.482519 | 2_3:+48008006 | None:intergenic |
| TTTGATCCTTTGAATCTATG+AGG | 0.483046 | 2_3:+48005628 | None:intergenic |
| AGATGAAGGGAAGCACATTA+GGG | 0.483338 | 2_3:+48006322 | None:intergenic |
| CGTTGGTAGGGGAAGGTTGG+TGG | 0.487939 | 2_3:-48007313 | Msa0295420:CDS |
| GCCAAGACGGATGCCATTCA+AGG | 0.488453 | 2_3:+48007229 | None:intergenic |
| AGGATCAAAGGTATATGAAA+AGG | 0.489279 | 2_3:-48005614 | Msa0295420:CDS |
| AGTTTCAACAGAATTCATCT+TGG | 0.491537 | 2_3:-48005972 | Msa0295420:CDS |
| CATGATGTCAATTCTCACAA+TGG | 0.491712 | 2_3:-48006292 | Msa0295420:CDS |
| GGAAAGAGTTATGGATGATG+AGG | 0.492236 | 2_3:+48008176 | None:intergenic |
| TCCTTGAATGGCATCCGTCT+TGG | 0.496853 | 2_3:-48007230 | Msa0295420:CDS |
| CCTCTTGGTGATCAATACTC+AGG | 0.497390 | 2_3:-48008154 | Msa0295420:CDS |
| ACAGGAACCTTGTGTATGAT+TGG | 0.498917 | 2_3:-48006654 | Msa0295420:CDS |
| TTCTTCATTTGCAATTTACT+CGG | 0.501178 | 2_3:-48006457 | Msa0295420:CDS |
| ATTTCTTAACTCTTTCAAGC+TGG | 0.501659 | 2_3:+48007024 | None:intergenic |
| CGCAATCTTAACTCAAAGGC+TGG | 0.504135 | 2_3:-48006627 | Msa0295420:CDS |
| GGGAGTTGACTCTTTGATGA+TGG | 0.505808 | 2_3:+48008204 | None:intergenic |
| GAGAGTTTGAGTTCTGAAAA+GGG | 0.509784 | 2_3:-48007725 | Msa0295420:CDS |
| AATTATGCTCAACTCGGCGA+TGG | 0.510910 | 2_3:-48005781 | Msa0295420:CDS |
| ATCATGAAATCGTCCTTGAA+TGG | 0.513058 | 2_3:-48007242 | Msa0295420:CDS |
| ATCCGAAAACTACGTTGGTA+GGG | 0.513232 | 2_3:-48007325 | Msa0295420:CDS |
| AGAAAACAAGCATAGGTTGA+AGG | 0.515198 | 2_3:-48007399 | Msa0295420:CDS |
| CATCCGTCTTGGCGATTGCT+CGG | 0.515903 | 2_3:-48007219 | Msa0295420:CDS |
| CAGAAGGTACTTATGATTCA+AGG | 0.516498 | 2_3:-48006677 | Msa0295420:CDS |
| CCTCTGGATTGCTGAGAGAA+AGG | 0.518991 | 2_3:-48006067 | Msa0295420:CDS |
| TTGTAACTTTCAAGCTTGAA+GGG | 0.520372 | 2_3:-48007898 | Msa0295420:CDS |
| GATAGAAGCTGTTTGGAGAA+TGG | 0.520712 | 2_3:-48006427 | Msa0295420:CDS |
| CTACGTTGGTAGGGGAAGGT+TGG | 0.520779 | 2_3:-48007316 | Msa0295420:CDS |
| AAGTTAATGAAATAGCTGTA+AGG | 0.521660 | 2_3:-48006176 | Msa0295420:CDS |
| CAATACTCAGGTTACTTCAC+AGG | 0.523091 | 2_3:-48008142 | Msa0295420:CDS |
| ACAAGGTTGTCAAGAACAAA+GGG | 0.531404 | 2_3:-48006989 | Msa0295420:CDS |
| GCATAGGTTGAAGGTTATGA+TGG | 0.533152 | 2_3:-48007390 | Msa0295420:CDS |
| TGAAGAGTATTTGTTGCTGA+AGG | 0.533240 | 2_3:+48008090 | None:intergenic |
| TGGGAGAACATGAAATCTTA+CGG | 0.533397 | 2_3:-48005952 | Msa0295420:CDS |
| AATAATCCAGCTGCATACAA+AGG | 0.536085 | 2_3:+48006027 | None:intergenic |
| ATAATCCAGCTGCATACAAA+GGG | 0.540543 | 2_3:+48006028 | None:intergenic |
| TTGTGTTTGGATATGTTGGA+TGG | 0.542000 | 2_3:-48006203 | Msa0295420:CDS |
| CATGTAAGCAACTTTAGCTA+TGG | 0.542750 | 2_3:-48007965 | Msa0295420:CDS |
| AATGGATATGGAGATTATCA+TGG | 0.548482 | 2_3:-48006409 | Msa0295420:CDS |
| GAACAATGATCTTTGTAAGA+GGG | 0.548742 | 2_3:+48008229 | None:intergenic |
| AATTTCGAAGATGACAGGGT+TGG | 0.552719 | 2_3:-48007074 | Msa0295420:CDS |
| TCCGAAAACTACGTTGGTAG+GGG | 0.555710 | 2_3:-48007324 | Msa0295420:CDS |
| GGTACTTATGATTCAAGGAC+AGG | 0.556525 | 2_3:-48006672 | Msa0295420:CDS |
| CACAAGGTTGTCAAGAACAA+AGG | 0.565650 | 2_3:-48006990 | Msa0295420:CDS |
| TTCCACAACAGACACTCCTA+TGG | 0.566678 | 2_3:-48006820 | Msa0295420:CDS |
| GATATTGTCATTCCTTTGGG+AGG | 0.567628 | 2_3:-48005709 | Msa0295420:CDS |
| TTGCCGCAATCTTAACTCAA+AGG | 0.572037 | 2_3:-48006631 | Msa0295420:CDS |
| TCATAGATTCAAAGGATCAA+AGG | 0.572929 | 2_3:-48005626 | Msa0295420:CDS |
| GTTCTGCCTCATAGATTCAA+AGG | 0.574597 | 2_3:-48005634 | Msa0295420:CDS |
| GTTGGTAGGGGAAGGTTGGT+GGG | 0.583510 | 2_3:-48007312 | Msa0295420:CDS |
| GAAATCATGTCCAGCACACA+AGG | 0.589576 | 2_3:-48007006 | Msa0295420:CDS |
| ATCATGAAAATTGAGATGAA+GGG | 0.595539 | 2_3:+48006309 | None:intergenic |
| AGCTGTAAGGATTATAACAA+TGG | 0.597737 | 2_3:-48006163 | Msa0295420:CDS |
| TAGAAATTTCGAAGATGACA+GGG | 0.600967 | 2_3:-48007078 | Msa0295420:CDS |
| GCTTCTGATTCAGTCACCAC+AGG | 0.601246 | 2_3:+48005589 | None:intergenic |
| CTGAGTATTGATCACCAAGA+GGG | 0.601282 | 2_3:+48008155 | None:intergenic |
| CTTCTAATAGCTCTTGAGAG+TGG | 0.601771 | 2_3:+48007530 | None:intergenic |
| GTTCTCAAGAAAACAAGCAT+AGG | 0.605390 | 2_3:-48007406 | Msa0295420:CDS |
| AGAGTGAAGATTTCAGCAGA+AGG | 0.606308 | 2_3:-48006693 | Msa0295420:CDS |
| TTACCGAGCAATCGCCAAGA+CGG | 0.607355 | 2_3:+48007216 | None:intergenic |
| CACCATAGGAGTGTCTGTTG+TGG | 0.607425 | 2_3:+48006818 | None:intergenic |
| AAAACTACGTTGGTAGGGGA+AGG | 0.612097 | 2_3:-48007320 | Msa0295420:CDS |
| GCTTCGAAATTGAGAACAAG+CGG | 0.617144 | 2_3:+48006258 | None:intergenic |
| AACAAGTTTAGAAATACTTG+TGG | 0.618557 | 2_3:+48005901 | None:intergenic |
| CCATATATGATGTCTTTGAA+AGG | 0.621501 | 2_3:-48007437 | Msa0295420:CDS |
| CCATTGTTGAACATCACCAT+AGG | 0.630256 | 2_3:+48006804 | None:intergenic |
| AAGACTAATGAAAGCCAGAA+CGG | 0.634141 | 2_3:-48006090 | Msa0295420:CDS |
| TTTCAATCCGAAAACTACGT+TGG | 0.634421 | 2_3:-48007330 | Msa0295420:CDS |
| ACCAAGTTAGTTGAAGAAGA+CGG | 0.644238 | 2_3:+48006121 | None:intergenic |
| CAGCCTTTGAGTTAAGATTG+CGG | 0.648649 | 2_3:+48006628 | None:intergenic |
| TACTCAGGTTACTTCACAGG+AGG | 0.658618 | 2_3:-48008139 | Msa0295420:CDS |
| GCAAATAAGATACCTCCCAA+AGG | 0.662067 | 2_3:+48005697 | None:intergenic |
| ACTCGTAATTATGCTCAACT+CGG | 0.677828 | 2_3:-48005787 | Msa0295420:CDS |
| CTGTAAAGATCATAGGCATG+CGG | 0.680972 | 2_3:+48005811 | None:intergenic |
| CCTTTCTCTCAGCAATCCAG+AGG | 0.683130 | 2_3:+48006067 | None:intergenic |
| CCTATGGTGATGTTCAACAA+TGG | 0.683459 | 2_3:-48006804 | Msa0295420:CDS |
| TGGAACACAGTTACGCTCTG+TGG | 0.689056 | 2_3:-48006607 | Msa0295420:CDS |
| GGTATATGAAAAGGTGCCTG+TGG | 0.700967 | 2_3:-48005605 | Msa0295420:CDS |
| CCTGAGTATTGATCACCAAG+AGG | 0.701913 | 2_3:+48008154 | None:intergenic |
| GCGGCAACCAATCATACACA+AGG | 0.708091 | 2_3:+48006647 | None:intergenic |
| GAGAACATGAAATCTTACGG+TGG | 0.722259 | 2_3:-48005949 | Msa0295420:CDS |
| AAGGAAGTATCAAAAGCACG+CGG | 0.756530 | 2_3:-48006518 | Msa0295420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATACTAATAGCATAAT+TGG | - | chr2_3:48006713-48006732 | Msa0295420:CDS | 15.0% |
| !! | ATTCAAAAGAAAGAAAAACA+TGG | + | chr2_3:48005589-48005608 | None:intergenic | 20.0% |
| !! | TTTCAAATAAAAGTGACTAT+TGG | - | chr2_3:48006507-48006526 | Msa0295420:CDS | 20.0% |
| !! | ATATCATAAGAATAAACATC+TGG | + | chr2_3:48006920-48006939 | None:intergenic | 20.0% |
| !!! | TTTTTGCTGTTATAATTTTG+AGG | + | chr2_3:48007646-48007665 | None:intergenic | 20.0% |
| ! | GAACAAAAACTTGATGAATA+TGG | + | chr2_3:48006317-48006336 | None:intergenic | 25.0% |
| !! | TTTTTATTGACCAAACTGAA+GGG | + | chr2_3:48006697-48006716 | None:intergenic | 25.0% |
| !!! | TTTTTTATTGACCAAACTGA+AGG | + | chr2_3:48006698-48006717 | None:intergenic | 25.0% |
| ! | ATAGCATAATTGGACAAATT+TGG | - | chr2_3:48006723-48006742 | Msa0295420:CDS | 25.0% |
| ! | TGATATGAGATTTGATATGT+TGG | - | chr2_3:48006934-48006953 | Msa0295420:CDS | 25.0% |
| ! | AAAACCATAGGAGTTAATAT+TGG | + | chr2_3:48006975-48006994 | None:intergenic | 25.0% |
| ! | TAAGGTTGAATTAGAAAGTA+TGG | + | chr2_3:48007122-48007141 | None:intergenic | 25.0% |
| ! | CTAATTCAACCTTATATAAC+CGG | - | chr2_3:48007128-48007147 | Msa0295420:CDS | 25.0% |
| ! | ACAAATTAAACACTGAATTC+CGG | + | chr2_3:48007150-48007169 | None:intergenic | 25.0% |
| !!! | TCTAAACTTTTGAAGTAAAG+AGG | + | chr2_3:48007391-48007410 | None:intergenic | 25.0% |
| ! | TTCTTCATTTGCAATTTACT+CGG | - | chr2_3:48007414-48007433 | Msa0295420:CDS | 25.0% |
| ! | ATCATGAAAATTGAGATGAA+GGG | + | chr2_3:48007565-48007584 | None:intergenic | 25.0% |
| ! | AAGTTAATGAAATAGCTGTA+AGG | - | chr2_3:48007695-48007714 | Msa0295420:CDS | 25.0% |
| ! | AACAAGTTTAGAAATACTTG+TGG | + | chr2_3:48007973-48007992 | None:intergenic | 25.0% |
| !! | CTTTCATGTTCATTTTACTT+TGG | - | chr2_3:48008015-48008034 | Msa0295420:CDS | 25.0% |
| !! | AGATTTTTACTCAACTACTT+GGG | - | chr2_3:48008140-48008159 | Msa0295420:CDS | 25.0% |
| GAACAATGATCTTTGTAAGA+GGG | + | chr2_3:48005645-48005664 | None:intergenic | 30.0% | |
| AGAACAATGATCTTTGTAAG+AGG | + | chr2_3:48005646-48005665 | None:intergenic | 30.0% | |
| ! | TTATGGATGATGAGGTTTTT+GGG | + | chr2_3:48005690-48005709 | None:intergenic | 30.0% |
| ! | CATGCATTTTTATGTGTCTA+AGG | + | chr2_3:48005812-48005831 | None:intergenic | 30.0% |
| ACATGATAGTAAACTGTGTT+TGG | + | chr2_3:48005891-48005910 | None:intergenic | 30.0% | |
| TTTGTAACTTTCAAGCTTGA+AGG | - | chr2_3:48005972-48005991 | Msa0295420:CDS | 30.0% | |
| TTGTAACTTTCAAGCTTGAA+GGG | - | chr2_3:48005973-48005992 | Msa0295420:CDS | 30.0% | |
| ! | ATCTTCTGGAAAAGTTTGTA+TGG | - | chr2_3:48006007-48006026 | Msa0295420:CDS | 30.0% |
| GGAATTAGTTATTCACAAAC+AGG | - | chr2_3:48006038-48006057 | Msa0295420:CDS | 30.0% | |
| ! | AACATCACTAGTTTGATTAG+TGG | - | chr2_3:48006116-48006135 | Msa0295420:CDS | 30.0% |
| GGAAACATCATTAGAGAAAT+TGG | + | chr2_3:48006197-48006216 | None:intergenic | 30.0% | |
| !!! | CGATAACTATAGTTTGCTTT+TGG | + | chr2_3:48006218-48006237 | None:intergenic | 30.0% |
| AGCAAACTATAGTTATCGTT+TGG | - | chr2_3:48006220-48006239 | Msa0295420:CDS | 30.0% | |
| ! | AAGTGATGTTTCTGAGAAAA+AGG | - | chr2_3:48006277-48006296 | Msa0295420:CDS | 30.0% |
| ! | AGTGATGTTTCTGAGAAAAA+GGG | - | chr2_3:48006278-48006297 | Msa0295420:CDS | 30.0% |
| CCTTTCAAAGACATCATATA+TGG | + | chr2_3:48006437-48006456 | None:intergenic | 30.0% | |
| CCATATATGATGTCTTTGAA+AGG | - | chr2_3:48006434-48006453 | Msa0295420:CDS | 30.0% | |
| AGTGACTATTGGATTGAAAA+AGG | - | chr2_3:48006518-48006537 | Msa0295420:CDS | 30.0% | |
| ATTTCATGATGCCAATGAAA+TGG | + | chr2_3:48006619-48006638 | None:intergenic | 30.0% | |
| GTTATCATCTTGAAGTAGTT+TGG | + | chr2_3:48006770-48006789 | None:intergenic | 30.0% | |
| TTAGAAATTTCGAAGATGAC+AGG | - | chr2_3:48006792-48006811 | Msa0295420:CDS | 30.0% | |
| TAGAAATTTCGAAGATGACA+GGG | - | chr2_3:48006793-48006812 | Msa0295420:CDS | 30.0% | |
| ATTTCTTAACTCTTTCAAGC+TGG | + | chr2_3:48006850-48006869 | None:intergenic | 30.0% | |
| AATGGATATGGAGATTATCA+TGG | - | chr2_3:48007462-48007481 | Msa0295420:CDS | 30.0% | |
| CATCATGAAAATTGAGATGA+AGG | + | chr2_3:48007566-48007585 | None:intergenic | 30.0% | |
| ATGATGTCAATTCTCACAAT+GGG | - | chr2_3:48007580-48007599 | Msa0295420:CDS | 30.0% | |
| AACAGCAAAAACTTTGTGTT+TGG | - | chr2_3:48007655-48007674 | Msa0295420:CDS | 30.0% | |
| AACTTTGTGTTTGGATATGT+TGG | - | chr2_3:48007664-48007683 | Msa0295420:CDS | 30.0% | |
| AGCTGTAAGGATTATAACAA+TGG | - | chr2_3:48007708-48007727 | Msa0295420:CDS | 30.0% | |
| AGTTTCAACAGAATTCATCT+TGG | - | chr2_3:48007899-48007918 | Msa0295420:CDS | 30.0% | |
| GTTTCAACAGAATTCATCTT+GGG | - | chr2_3:48007900-48007919 | Msa0295420:CDS | 30.0% | |
| GTAAAAATCTGCATTAGGAT+TGG | + | chr2_3:48008130-48008149 | None:intergenic | 30.0% | |
| GTTGAGTAAAAATCTGCATT+AGG | + | chr2_3:48008135-48008154 | None:intergenic | 30.0% | |
| ! | CAGATTTTTACTCAACTACT+TGG | - | chr2_3:48008139-48008158 | Msa0295420:CDS | 30.0% |
| TTTGATCCTTTGAATCTATG+AGG | + | chr2_3:48008246-48008265 | None:intergenic | 30.0% | |
| TCATAGATTCAAAGGATCAA+AGG | - | chr2_3:48008245-48008264 | Msa0295420:CDS | 30.0% | |
| ! | AGGATCAAAGGTATATGAAA+AGG | - | chr2_3:48008257-48008276 | Msa0295420:CDS | 30.0% |
| ! | GTTATGGATGATGAGGTTTT+TGG | + | chr2_3:48005691-48005710 | None:intergenic | 35.0% |
| !! | TGAAGAGTATTTGTTGCTGA+AGG | + | chr2_3:48005784-48005803 | None:intergenic | 35.0% |
| !! | AGCAGTTCTGAATGAAATAG+TGG | + | chr2_3:48005868-48005887 | None:intergenic | 35.0% |
| CATGTAAGCAACTTTAGCTA+TGG | - | chr2_3:48005906-48005925 | Msa0295420:CDS | 35.0% | |
| TCTGGAAAAGTTTGTATGGT+TGG | - | chr2_3:48006011-48006030 | Msa0295420:CDS | 35.0% | |
| AAAGTTTGTATGGTTGGAAC+AGG | - | chr2_3:48006017-48006036 | Msa0295420:CDS | 35.0% | |
| !! | AGAGAGTTTGAGTTCTGAAA+AGG | - | chr2_3:48006145-48006164 | Msa0295420:CDS | 35.0% |
| !! | GAGAGTTTGAGTTCTGAAAA+GGG | - | chr2_3:48006146-48006165 | Msa0295420:CDS | 35.0% |
| ACTCATGAGTGTACTCTAAT+CGG | + | chr2_3:48006370-48006389 | None:intergenic | 35.0% | |
| GGCAATTGATCACTCATTAT+AGG | + | chr2_3:48006416-48006435 | None:intergenic | 35.0% | |
| GTTCTCAAGAAAACAAGCAT+AGG | - | chr2_3:48006465-48006484 | Msa0295420:CDS | 35.0% | |
| ! | AGAAAACAAGCATAGGTTGA+AGG | - | chr2_3:48006472-48006491 | Msa0295420:CDS | 35.0% |
| TTTCAATCCGAAAACTACGT+TGG | - | chr2_3:48006541-48006560 | Msa0295420:CDS | 35.0% | |
| ATCATGAAATCGTCCTTGAA+TGG | - | chr2_3:48006629-48006648 | Msa0295420:CDS | 35.0% | |
| GATTGAAATTCCCTTCAGTT+TGG | - | chr2_3:48006684-48006703 | Msa0295420:CDS | 35.0% | |
| ACAAGGTTGTCAAGAACAAA+GGG | - | chr2_3:48006882-48006901 | Msa0295420:CDS | 35.0% | |
| GAGTCCAATATTAACTCCTA+TGG | - | chr2_3:48006968-48006987 | Msa0295420:CDS | 35.0% | |
| TAAAGGAGCTGAAAAACCAT+AGG | + | chr2_3:48006987-48007006 | None:intergenic | 35.0% | |
| ! | TTTTCAGCTCCTTTATCTGT+TGG | - | chr2_3:48006992-48007011 | Msa0295420:CDS | 35.0% |
| ACTTGATCACCAACAGATAA+AGG | + | chr2_3:48007004-48007023 | None:intergenic | 35.0% | |
| ! | GTGGAATTTGAAATGGTAAC+AGG | + | chr2_3:48007037-48007056 | None:intergenic | 35.0% |
| GTCTGTTGTGGAATTTGAAA+TGG | + | chr2_3:48007044-48007063 | None:intergenic | 35.0% | |
| CACTGAATTCCGGTTATATA+AGG | + | chr2_3:48007140-48007159 | None:intergenic | 35.0% | |
| !! | CAGAAGGTACTTATGATTCA+AGG | - | chr2_3:48007194-48007213 | Msa0295420:CDS | 35.0% |
| GAAGTTTCAGTTTCCATCAT+TGG | - | chr2_3:48007303-48007322 | Msa0295420:CDS | 35.0% | |
| !!! | CCATTTTTTGCATCCAATGA+TGG | + | chr2_3:48007319-48007338 | None:intergenic | 35.0% |
| CCATCATTGGATGCAAAAAA+TGG | - | chr2_3:48007316-48007335 | Msa0295420:CDS | 35.0% | |
| AATGGAAGCTACGACATTAA+AGG | - | chr2_3:48007334-48007353 | Msa0295420:CDS | 35.0% | |
| CATGATGTCAATTCTCACAA+TGG | - | chr2_3:48007579-48007598 | Msa0295420:CDS | 35.0% | |
| TTGTGTTTGGATATGTTGGA+TGG | - | chr2_3:48007668-48007687 | Msa0295420:CDS | 35.0% | |
| ACCAAGTTAGTTGAAGAAGA+CGG | + | chr2_3:48007753-48007772 | None:intergenic | 35.0% | |
| AAGACTAATGAAAGCCAGAA+CGG | - | chr2_3:48007781-48007800 | Msa0295420:CDS | 35.0% | |
| ATAATCCAGCTGCATACAAA+GGG | + | chr2_3:48007846-48007865 | None:intergenic | 35.0% | |
| AATAATCCAGCTGCATACAA+AGG | + | chr2_3:48007847-48007866 | None:intergenic | 35.0% | |
| TGGGAGAACATGAAATCTTA+CGG | - | chr2_3:48007919-48007938 | Msa0295420:CDS | 35.0% | |
| ACTCGTAATTATGCTCAACT+CGG | - | chr2_3:48008084-48008103 | Msa0295420:CDS | 35.0% | |
| TTGGGATATTGTCATTCCTT+TGG | - | chr2_3:48008158-48008177 | Msa0295420:CDS | 35.0% | |
| TGGGATATTGTCATTCCTTT+GGG | - | chr2_3:48008159-48008178 | Msa0295420:CDS | 35.0% | |
| AGAGGGTTGTGATGAAGAAA+AGG | + | chr2_3:48005628-48005647 | None:intergenic | 40.0% | |
| GGAAAGAGTTATGGATGATG+AGG | + | chr2_3:48005698-48005717 | None:intergenic | 40.0% | |
| ATCCATAACTCTTTCCCTCT+TGG | - | chr2_3:48005702-48005721 | Msa0295420:CDS | 40.0% | |
| !! | CTGAGTATTGATCACCAAGA+GGG | + | chr2_3:48005719-48005738 | None:intergenic | 40.0% |
| CAATACTCAGGTTACTTCAC+AGG | - | chr2_3:48005729-48005748 | Msa0295420:CDS | 40.0% | |
| ! | CTTTCAAGCTTGAAGGGTTT+TGG | - | chr2_3:48005979-48005998 | Msa0295420:CDS | 40.0% |
| !! | GGGTTTTGGTCAAAATCTTC+TGG | - | chr2_3:48005993-48006012 | Msa0295420:CDS | 40.0% |
| CTTCTAATAGCTCTTGAGAG+TGG | + | chr2_3:48006344-48006363 | None:intergenic | 40.0% | |
| ! | GCATAGGTTGAAGGTTATGA+TGG | - | chr2_3:48006481-48006500 | Msa0295420:CDS | 40.0% |
| AATCCGAAAACTACGTTGGT+AGG | - | chr2_3:48006545-48006564 | Msa0295420:CDS | 40.0% | |
| ATCCGAAAACTACGTTGGTA+GGG | - | chr2_3:48006546-48006565 | Msa0295420:CDS | 40.0% | |
| ! | GTAGTTGCTTGCCATTTCAT+TGG | - | chr2_3:48006605-48006624 | Msa0295420:CDS | 40.0% |
| AATTTCGAAGATGACAGGGT+TGG | - | chr2_3:48006797-48006816 | Msa0295420:CDS | 40.0% | |
| CACAAGGTTGTCAAGAACAA+AGG | - | chr2_3:48006881-48006900 | Msa0295420:CDS | 40.0% | |
| CCATTGTTGAACATCACCAT+AGG | + | chr2_3:48007070-48007089 | None:intergenic | 40.0% | |
| ! | CCTATGGTGATGTTCAACAA+TGG | - | chr2_3:48007067-48007086 | Msa0295420:CDS | 40.0% |
| AGAGTGAAGATTTCAGCAGA+AGG | - | chr2_3:48007178-48007197 | Msa0295420:CDS | 40.0% | |
| GGTACTTATGATTCAAGGAC+AGG | - | chr2_3:48007199-48007218 | Msa0295420:CDS | 40.0% | |
| ACAGGAACCTTGTGTATGAT+TGG | - | chr2_3:48007217-48007236 | Msa0295420:CDS | 40.0% | |
| TTGCCGCAATCTTAACTCAA+AGG | - | chr2_3:48007240-48007259 | Msa0295420:CDS | 40.0% | |
| ! | CAGCCTTTGAGTTAAGATTG+CGG | + | chr2_3:48007246-48007265 | None:intergenic | 40.0% |
| !! | AAGGAAGTATCAAAAGCACG+CGG | - | chr2_3:48007353-48007372 | Msa0295420:CDS | 40.0% |
| AAACAGCGATAGAAGCTGTT+TGG | - | chr2_3:48007437-48007456 | Msa0295420:CDS | 40.0% | |
| GATAGAAGCTGTTTGGAGAA+TGG | - | chr2_3:48007444-48007463 | Msa0295420:CDS | 40.0% | |
| AGCTGTTTGGAGAATGGATA+TGG | - | chr2_3:48007450-48007469 | Msa0295420:CDS | 40.0% | |
| ! | ACTCTAGCATGTGTTTTCGT+CGG | - | chr2_3:48007499-48007518 | Msa0295420:CDS | 40.0% |
| ! | CATTAGGGTGTTTCTTGACA+TGG | + | chr2_3:48007537-48007556 | None:intergenic | 40.0% |
| ! | AGATGAAGGGAAGCACATTA+GGG | + | chr2_3:48007552-48007571 | None:intergenic | 40.0% |
| GCTTCGAAATTGAGAACAAG+CGG | + | chr2_3:48007616-48007635 | None:intergenic | 40.0% | |
| TCCGTCTTCTTCAACTAACT+TGG | - | chr2_3:48007749-48007768 | Msa0295420:CDS | 40.0% | |
| ! | ATTTTCCCTTTGTATGCAGC+TGG | - | chr2_3:48007838-48007857 | Msa0295420:CDS | 40.0% |
| GAGAACATGAAATCTTACGG+TGG | - | chr2_3:48007922-48007941 | Msa0295420:CDS | 40.0% | |
| CATGAAATCTTACGGTGGTT+TGG | - | chr2_3:48007927-48007946 | Msa0295420:CDS | 40.0% | |
| !! | ATCTTACGGTGGTTTGGTAT+TGG | - | chr2_3:48007933-48007952 | Msa0295420:CDS | 40.0% |
| CTGTAAAGATCATAGGCATG+CGG | + | chr2_3:48008063-48008082 | None:intergenic | 40.0% | |
| ACGAGTCCTGTAAAGATCAT+AGG | + | chr2_3:48008070-48008089 | None:intergenic | 40.0% | |
| GATATTGTCATTCCTTTGGG+AGG | - | chr2_3:48008162-48008181 | Msa0295420:CDS | 40.0% | |
| GCAAATAAGATACCTCCCAA+AGG | + | chr2_3:48008177-48008196 | None:intergenic | 40.0% | |
| ! | ATCTACTTGCAGCAACGTTT+TGG | - | chr2_3:48008204-48008223 | Msa0295420:CDS | 40.0% |
| GTTCTGCCTCATAGATTCAA+AGG | - | chr2_3:48008237-48008256 | Msa0295420:CDS | 40.0% | |
| ATCAGAAGCTGAAGTGCAAA+TGG | - | chr2_3:48008296-48008315 | Msa0295420:CDS | 40.0% | |
| ! | GGGAGTTGACTCTTTGATGA+TGG | + | chr2_3:48005670-48005689 | None:intergenic | 45.0% |
| CACCAAGAGGGAAAGAGTTA+TGG | + | chr2_3:48005707-48005726 | None:intergenic | 45.0% | |
| !! | CCTGAGTATTGATCACCAAG+AGG | + | chr2_3:48005720-48005739 | None:intergenic | 45.0% |
| ! | CCTCTTGGTGATCAATACTC+AGG | - | chr2_3:48005717-48005736 | Msa0295420:CDS | 45.0% |
| TACTCAGGTTACTTCACAGG+AGG | - | chr2_3:48005732-48005751 | Msa0295420:CDS | 45.0% | |
| ! | TCCGAAAACTACGTTGGTAG+GGG | - | chr2_3:48006547-48006566 | Msa0295420:CDS | 45.0% |
| ! | TCCCCTACCAACGTAGTTTT+CGG | + | chr2_3:48006551-48006570 | None:intergenic | 45.0% |
| ! | AAAACTACGTTGGTAGGGGA+AGG | - | chr2_3:48006551-48006570 | Msa0295420:CDS | 45.0% |
| GAAATCATGTCCAGCACACA+AGG | - | chr2_3:48006865-48006884 | Msa0295420:CDS | 45.0% | |
| TTCTTGACAACCTTGTGTGC+TGG | + | chr2_3:48006878-48006897 | None:intergenic | 45.0% | |
| TTCCACAACAGACACTCCTA+TGG | - | chr2_3:48007051-48007070 | Msa0295420:CDS | 45.0% | |
| CGCAATCTTAACTCAAAGGC+TGG | - | chr2_3:48007244-48007263 | Msa0295420:CDS | 45.0% | |
| ! | GAGATGAAGGGAAGCACATT+AGG | + | chr2_3:48007553-48007572 | None:intergenic | 45.0% |
| !! | TACGGTGGTTTGGTATTGGA+TGG | - | chr2_3:48007937-48007956 | Msa0295420:CDS | 45.0% |
| CGCATGCCTATGATCTTTAC+AGG | - | chr2_3:48008061-48008080 | Msa0295420:CDS | 45.0% | |
| AATTATGCTCAACTCGGCGA+TGG | - | chr2_3:48008090-48008109 | Msa0295420:CDS | 45.0% | |
| !! | GGTATATGAAAAGGTGCCTG+TGG | - | chr2_3:48008266-48008285 | Msa0295420:CDS | 45.0% |
| !! | TGACGCTGACTTCGAGAACT+TGG | + | chr2_3:48005939-48005958 | None:intergenic | 50.0% |
| TCCTTGAATGGCATCCGTCT+TGG | - | chr2_3:48006641-48006660 | Msa0295420:CDS | 50.0% | |
| TTACCGAGCAATCGCCAAGA+CGG | + | chr2_3:48006658-48006677 | None:intergenic | 50.0% | |
| !! | CACCATAGGAGTGTCTGTTG+TGG | + | chr2_3:48007056-48007075 | None:intergenic | 50.0% |
| GCGGCAACCAATCATACACA+AGG | + | chr2_3:48007227-48007246 | None:intergenic | 50.0% | |
| TGGAACACAGTTACGCTCTG+TGG | - | chr2_3:48007264-48007283 | Msa0295420:CDS | 50.0% | |
| CCTTTCTCTCAGCAATCCAG+AGG | + | chr2_3:48007807-48007826 | None:intergenic | 50.0% | |
| CCTCTGGATTGCTGAGAGAA+AGG | - | chr2_3:48007804-48007823 | Msa0295420:CDS | 50.0% | |
| GCTTCTGATTCAGTCACCAC+AGG | + | chr2_3:48008285-48008304 | None:intergenic | 50.0% | |
| ! | CTACGTTGGTAGGGGAAGGT+TGG | - | chr2_3:48006555-48006574 | Msa0295420:CDS | 55.0% |
| ! | GTTGGTAGGGGAAGGTTGGT+GGG | - | chr2_3:48006559-48006578 | Msa0295420:CDS | 55.0% |
| GCCAAGACGGATGCCATTCA+AGG | + | chr2_3:48006645-48006664 | None:intergenic | 55.0% | |
| CATCCGTCTTGGCGATTGCT+CGG | - | chr2_3:48006652-48006671 | Msa0295420:CDS | 55.0% | |
| ATGAAAGCCAGAACGGCCTC+TGG | - | chr2_3:48007788-48007807 | Msa0295420:CDS | 55.0% | |
| ! | CGTTGGTAGGGGAAGGTTGG+TGG | - | chr2_3:48006558-48006577 | Msa0295420:CDS | 60.0% |
| CAGCAATCCAGAGGCCGTTC+TGG | + | chr2_3:48007798-48007817 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 48005570 | 48008323 | 48005570 | ID=Msa0295420;Name=Msa0295420 |
| chr2_3 | mRNA | 48005570 | 48008323 | 48005570 | ID=Msa0295420-mRNA-1;Parent=Msa0295420;Name=Msa0295420-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|-1|0|1|-1|1|1|0|917 |
| chr2_3 | exon | 48005570 | 48008323 | 48005570 | ID=Msa0295420-mRNA-1:exon:14993;Parent=Msa0295420-mRNA-1 |
| chr2_3 | CDS | 48005570 | 48008323 | 48005570 | ID=Msa0295420-mRNA-1:cds;Parent=Msa0295420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
