Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216060 | KEH38737.1 | 93.122 | 916 | 61 | 2 | 1 | 914 | 18 | 933 | 0.0 | 1689 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216060 | A0A072VAA8 | 93.122 | 916 | 61 | 2 | 1 | 914 | 18 | 933 | 0.0 | 1689 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0216060 | Msa0256260 | 0.944548 | 1.593822e-103 | -8.615850e-47 |
| Msa0216060 | Msa0283620 | 0.801993 | 6.925950e-49 | -8.615850e-47 |
| Msa0216060 | Msa0295420 | 0.950319 | 2.104581e-108 | -8.615850e-47 |
| Msa0216060 | Msa0388010 | 0.823507 | 1.334704e-53 | -8.615850e-47 |
| Msa0216060 | Msa0388070 | 0.806348 | 8.592755e-50 | -8.615850e-47 |
| Msa0216060 | Msa0527950 | 0.822944 | 1.806319e-53 | -8.615850e-47 |
| Msa0216060 | Msa0576900 | 0.806490 | 8.020956e-50 | -8.615850e-47 |
| Msa0216060 | Msa1084890 | 0.802931 | 4.437868e-49 | -8.615850e-47 |
| Msa0216060 | Msa1157110 | 0.800843 | 1.191384e-48 | -8.615850e-47 |
| Msa0216060 | Msa1315480 | 0.801699 | 7.960801e-49 | -8.615850e-47 |
| Msa0216060 | Msa1390200 | 0.812311 | 4.519055e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216060 | MtrunA17_Chr2g0317661 | 92.662 | 804 | 57 | 2 | 1 | 802 | 5 | 808 | 0.0 | 1463 |
| Msa0216060 | MtrunA17_Chr2g0317651 | 62.486 | 917 | 275 | 17 | 22 | 915 | 24 | 894 | 0.0 | 1017 |
| Msa0216060 | MtrunA17_Chr2g0282201 | 39.182 | 929 | 492 | 27 | 21 | 907 | 35 | 932 | 0.0 | 602 |
| Msa0216060 | MtrunA17_Chr4g0003961 | 24.739 | 671 | 409 | 24 | 291 | 886 | 362 | 1011 | 1.55e-39 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216060 | AT4G21700.1 | 36.573 | 957 | 525 | 19 | 1 | 904 | 20 | 947 | 0.0 | 583 |
| Msa0216060 | AT1G52780.1 | 30.000 | 410 | 240 | 15 | 543 | 911 | 641 | 1044 | 1.17e-42 | 169 |
Find 144 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAACATCATTAGAGAAAT+TGG | 0.186922 | 2_1:-61757551 | None:intergenic |
| ATAGCATAATTGGACAAATT+TGG | 0.207848 | 2_1:+61758080 | Msa0216060:CDS |
| AGTGACTATTGGATTGAAAA+AGG | 0.229449 | 2_1:+61757875 | Msa0216060:CDS |
| CTATAACTATAATTTGCTTT+TGG | 0.237802 | 2_1:-61757572 | None:intergenic |
| CACTGAATTCCGGTTATATA+AGG | 0.242557 | 2_1:-61758494 | None:intergenic |
| CTTTCAAGCTTGAAGGGTTT+TGG | 0.259324 | 2_1:+61757336 | Msa0216060:CDS |
| CGCATGCCTATGATCTTTAC+AGG | 0.265337 | 2_1:+61759418 | Msa0216060:CDS |
| GTTATCATCTTGAAGTAGTT+TGG | 0.269424 | 2_1:-61758124 | None:intergenic |
| AGCAAATTATAGTTATAGTT+TGG | 0.277090 | 2_1:+61757577 | Msa0216060:CDS |
| TTGGGATATTGTCATTCCTT+TGG | 0.282244 | 2_1:+61759515 | Msa0216060:CDS |
| GTTATGGATGATGAGGTCTT+TGG | 0.292770 | 2_1:-61757045 | None:intergenic |
| TGGGATATTGTCATTCCTTT+GGG | 0.308996 | 2_1:+61759516 | Msa0216060:CDS |
| CAGCAATCCAGAGGCCGTTC+TGG | 0.315792 | 2_1:-61759152 | None:intergenic |
| GAGATGAAGGGAAGCACATT+AGG | 0.318248 | 2_1:-61758907 | None:intergenic |
| TAAGGTTGAATTAGAAAGTA+TGG | 0.318807 | 2_1:-61758476 | None:intergenic |
| AATGGAAGCTACGACATTAA+AGG | 0.322650 | 2_1:+61758691 | Msa0216060:CDS |
| TTTCAAATAAAAGTGACTAT+TGG | 0.348512 | 2_1:+61757864 | Msa0216060:CDS |
| CTAATTCAACCTTATATAAC+CGG | 0.351661 | 2_1:+61758485 | Msa0216060:CDS |
| AGCTGTTTGGAGAATGGATA+TGG | 0.353167 | 2_1:+61758807 | Msa0216060:CDS |
| ATCTACTTGCAGCAACGTTT+TGG | 0.356533 | 2_1:+61759561 | Msa0216060:CDS |
| GTGGAATTTGAAATGGTAAC+AGG | 0.366199 | 2_1:-61758391 | None:intergenic |
| GAAGTTTCAGTTTCCATCAT+TGG | 0.366609 | 2_1:+61758660 | Msa0216060:CDS |
| ACTTGATCACCAACAGATAA+AGG | 0.369401 | 2_1:-61758358 | None:intergenic |
| ACATGATAGTAAACTGTGTT+TGG | 0.372736 | 2_1:-61757245 | None:intergenic |
| TGAAGAGTATTTGTTGTTGA+AGG | 0.373226 | 2_1:-61757138 | None:intergenic |
| GGCAATTGATAACTCATTAT+AGG | 0.378988 | 2_1:-61757770 | None:intergenic |
| ATCTTACGGTGGTTTGGTAT+TGG | 0.388222 | 2_1:+61759290 | Msa0216060:CDS |
| ACAAATTAAACACTGAATTC+CGG | 0.391199 | 2_1:-61758504 | None:intergenic |
| AACATCACTAGTTTGATTAG+TGG | 0.393229 | 2_1:+61757473 | Msa0216060:CDS |
| TTTGTAACTTTCAAGCTTGA+AGG | 0.395443 | 2_1:+61757329 | Msa0216060:CDS |
| CCTTTCAAAGACATCATATA+TGG | 0.395688 | 2_1:-61757791 | None:intergenic |
| AACTTTGTGTTTGGATATGT+TGG | 0.396638 | 2_1:+61759021 | Msa0216060:CDS |
| AAAGTTTGTATGGTTGGAAC+AGG | 0.402221 | 2_1:+61757374 | Msa0216060:CDS |
| CATGAAATCTTACGGTGGTT+TGG | 0.402506 | 2_1:+61759284 | Msa0216060:CDS |
| ATCTTCTGGAAAAGTTTGTA+TGG | 0.406589 | 2_1:+61757364 | Msa0216060:CDS |
| GATTGAAATTCCCTTCAGTT+TGG | 0.408596 | 2_1:+61758041 | Msa0216060:CDS |
| TTCTTGACAACCTTGTGTGC+TGG | 0.413293 | 2_1:-61758232 | None:intergenic |
| CACCAAGAGGGAAAGAGTTA+TGG | 0.414969 | 2_1:-61757061 | None:intergenic |
| GTAGTTGCTTGCCATTTCAT+TGG | 0.417487 | 2_1:+61757962 | Msa0216060:CDS |
| ATCCATAACTCTTTCCCTCT+TGG | 0.418294 | 2_1:+61757059 | Msa0216060:CDS |
| AAAACCATAGGAGTTAATAT+TGG | 0.419361 | 2_1:-61758329 | None:intergenic |
| GGAATTAGTTATTCACAAAC+AGG | 0.420602 | 2_1:+61757395 | Msa0216060:CDS |
| TGACGCTGACTTCGAGAACT+TGG | 0.422253 | 2_1:-61757293 | None:intergenic |
| TCTGGAAAAGTTTGTATGGT+TGG | 0.423754 | 2_1:+61757368 | Msa0216060:CDS |
| ACGAGTCCTGTAAAGATCAT+AGG | 0.426060 | 2_1:-61759424 | None:intergenic |
| GTCTGTTGTGGAATTTGAAA+TGG | 0.428495 | 2_1:-61758398 | None:intergenic |
| CATCATGAAAATTGAGATGA+AGG | 0.429482 | 2_1:-61758920 | None:intergenic |
| TTATGGATGATGAGGTCTTT+GGG | 0.432881 | 2_1:-61757044 | None:intergenic |
| AAACAGCGATAGAAGCTGTT+TGG | 0.433120 | 2_1:+61758794 | Msa0216060:CDS |
| AGAGAGTTTGAGTTCTGAAA+AGG | 0.435977 | 2_1:+61757502 | Msa0216060:CDS |
| AATCCGAAAACTACGTTGGT+AGG | 0.439528 | 2_1:+61757902 | Msa0216060:CDS |
| GAGTCCAATATTAACTCCTA+TGG | 0.444229 | 2_1:+61758325 | Msa0216060:CDS |
| TCCGTCTTCTTCAACTAACT+TGG | 0.449556 | 2_1:+61759106 | Msa0216060:CDS |
| ATGAAAGCCAGAACGGCCTC+TGG | 0.451976 | 2_1:+61759145 | Msa0216060:CDS |
| ATATCATAAGAATAAACATC+TGG | 0.452325 | 2_1:-61758274 | None:intergenic |
| TTAGAAATTTCGAAGATGAC+AGG | 0.454008 | 2_1:+61758149 | Msa0216060:CDS |
| ATTTCATGATGCCAATGAAA+TGG | 0.456483 | 2_1:-61757973 | None:intergenic |
| ATCAGAAGCTGAAGTGCAAA+TGG | 0.460410 | 2_1:+61759653 | Msa0216060:CDS |
| GAACAATGGTCTTTGTAAGA+AGG | 0.460482 | 2_1:-61756999 | None:intergenic |
| AGAAGGTTGTGATGAAGAAA+AGG | 0.464589 | 2_1:-61756982 | None:intergenic |
| GTTTCAACAGAATTCATCTT+GGG | 0.468650 | 2_1:+61759257 | Msa0216060:CDS |
| TACGGTGGTTTGGTATTGGA+TGG | 0.472128 | 2_1:+61759294 | Msa0216060:CDS |
| TGATATGAGATTTGATATGT+TGG | 0.477720 | 2_1:+61758291 | Msa0216060:CDS |
| CATTAGGGTGTTTCTTGACA+TGG | 0.479152 | 2_1:-61758891 | None:intergenic |
| ATGATGTCAATTCTCACAAT+GGG | 0.479267 | 2_1:+61758937 | Msa0216060:CDS |
| TTTGATCCTTTGAATCTATG+AGG | 0.483046 | 2_1:-61759600 | None:intergenic |
| AGATGAAGGGAAGCACATTA+GGG | 0.483338 | 2_1:-61758906 | None:intergenic |
| CGTTGGTAGGGGAAGGTTGG+TGG | 0.487939 | 2_1:+61757915 | Msa0216060:CDS |
| GCCAAGACGGATGCCATTCA+AGG | 0.488453 | 2_1:-61757999 | None:intergenic |
| AGGATCAAAGGTATATGAAA+AGG | 0.489279 | 2_1:+61759614 | Msa0216060:CDS |
| ATCCGAAAACTACGTTGGTA+GGG | 0.490271 | 2_1:+61757903 | Msa0216060:CDS |
| AGTTTCAACAGAATTCATCT+TGG | 0.491537 | 2_1:+61759256 | Msa0216060:CDS |
| CATGATGTCAATTCTCACAA+TGG | 0.491712 | 2_1:+61758936 | Msa0216060:CDS |
| GGGAGTTGACTCTATGATGA+TGG | 0.492447 | 2_1:-61757024 | None:intergenic |
| TCCTTGAATGGCATCCGTCT+TGG | 0.496853 | 2_1:+61757998 | Msa0216060:CDS |
| CCTCTTGGTGATCAATACTC+AGG | 0.497390 | 2_1:+61757074 | Msa0216060:CDS |
| ACAGGAACCTTGTGTATGAT+TGG | 0.498917 | 2_1:+61758574 | Msa0216060:CDS |
| ATTTCTTAACTCTTTCAAGC+TGG | 0.501659 | 2_1:-61758204 | None:intergenic |
| TTCTTCATTTGCAATTTACT+CGG | 0.503973 | 2_1:+61758771 | Msa0216060:CDS |
| CGCAATCTTAACTCAAAGGC+TGG | 0.504135 | 2_1:+61758601 | Msa0216060:CDS |
| GAGAGTTTGAGTTCTGAAAA+GGG | 0.509784 | 2_1:+61757503 | Msa0216060:CDS |
| AATTATGCTCAACTCGGCGA+TGG | 0.510910 | 2_1:+61759447 | Msa0216060:CDS |
| GGAAAGAGTTATGGATGATG+AGG | 0.512077 | 2_1:-61757052 | None:intergenic |
| ATCATGAAATCGTCCTTGAA+TGG | 0.513058 | 2_1:+61757986 | Msa0216060:CDS |
| AGAAAACAAGCATAGGTTGA+AGG | 0.515198 | 2_1:+61757829 | Msa0216060:CDS |
| CATCCGTCTTGGCGATTGCT+CGG | 0.515903 | 2_1:+61758009 | Msa0216060:CDS |
| CAGAAGGTACTTATGATTCA+AGG | 0.516498 | 2_1:+61758551 | Msa0216060:CDS |
| CCTCTGGATTGCTGAGAGAA+AGG | 0.518991 | 2_1:+61759161 | Msa0216060:CDS |
| TTGTAACTTTCAAGCTTGAA+GGG | 0.520372 | 2_1:+61757330 | Msa0216060:CDS |
| GATAGAAGCTGTTTGGAGAA+TGG | 0.520712 | 2_1:+61758801 | Msa0216060:CDS |
| CTACGTTGGTAGGGGAAGGT+TGG | 0.520779 | 2_1:+61757912 | Msa0216060:CDS |
| AAGTTAATGAAATAGCTGTA+AGG | 0.521660 | 2_1:+61759052 | Msa0216060:CDS |
| CAATACTCAGGTTACTTCAC+AGG | 0.523091 | 2_1:+61757086 | Msa0216060:CDS |
| ACAAGGTTGTCAAGAACAAA+GGG | 0.531404 | 2_1:+61758239 | Msa0216060:CDS |
| GCATAGGTTGAAGGTTATGA+TGG | 0.533152 | 2_1:+61757838 | Msa0216060:CDS |
| TGGGAGAACATGAAATCTTA+CGG | 0.533397 | 2_1:+61759276 | Msa0216060:CDS |
| AATAATCCAGCTGCATACAA+AGG | 0.536085 | 2_1:-61759201 | None:intergenic |
| ATAATCCAGCTGCATACAAA+GGG | 0.540543 | 2_1:-61759200 | None:intergenic |
| TTGTGTTTGGATATGTTGGA+TGG | 0.542000 | 2_1:+61759025 | Msa0216060:CDS |
| CATGTAAGCAACTTTAGCTA+TGG | 0.542750 | 2_1:+61757263 | Msa0216060:CDS |
| AATGGATATGGAGATTATCA+TGG | 0.548482 | 2_1:+61758819 | Msa0216060:CDS |
| TCCGAAAACTACGTTGGTAG+GGG | 0.552544 | 2_1:+61757904 | Msa0216060:CDS |
| AATTTCGAAGATGACAGGGT+TGG | 0.552719 | 2_1:+61758154 | Msa0216060:CDS |
| GGTACTTATGATTCAAGGAC+AGG | 0.556525 | 2_1:+61758556 | Msa0216060:CDS |
| CACAAGGTTGTCAAGAACAA+AGG | 0.565650 | 2_1:+61758238 | Msa0216060:CDS |
| TTCCACAACAGACACTCCTA+TGG | 0.566678 | 2_1:+61758408 | Msa0216060:CDS |
| GATATTGTCATTCCTTTGGG+AGG | 0.567628 | 2_1:+61759519 | Msa0216060:CDS |
| TTGCCGCAATCTTAACTCAA+AGG | 0.572037 | 2_1:+61758597 | Msa0216060:CDS |
| TCATAGATTCAAAGGATCAA+AGG | 0.572929 | 2_1:+61759602 | Msa0216060:CDS |
| GTTCTGCCTCATAGATTCAA+AGG | 0.574597 | 2_1:+61759594 | Msa0216060:CDS |
| CTTCTAATAGCTCTTGAGAG+TGG | 0.583129 | 2_1:-61757698 | None:intergenic |
| GTTGGTAGGGGAAGGTTGGT+GGG | 0.583510 | 2_1:+61757916 | Msa0216060:CDS |
| GAAATCATGTCCAGCACACA+AGG | 0.589576 | 2_1:+61758222 | Msa0216060:CDS |
| ATCATGAAAATTGAGATGAA+GGG | 0.595539 | 2_1:-61758919 | None:intergenic |
| AGCTGTAAGGATTATAACAA+TGG | 0.597737 | 2_1:+61759065 | Msa0216060:CDS |
| TAGAAATTTCGAAGATGACA+GGG | 0.600967 | 2_1:+61758150 | Msa0216060:CDS |
| GCTTCTGATTCAGTCACCAC+AGG | 0.601246 | 2_1:-61759639 | None:intergenic |
| CTGAGTATTGATCACCAAGA+GGG | 0.601282 | 2_1:-61757073 | None:intergenic |
| GTTCTCAAGAAAACAAGCAT+AGG | 0.605390 | 2_1:+61757822 | Msa0216060:CDS |
| AGAGTGAAGATTTCAGCAGA+AGG | 0.606308 | 2_1:+61758535 | Msa0216060:CDS |
| TTACCGAGCAATCGCCAAGA+CGG | 0.607355 | 2_1:-61758012 | None:intergenic |
| CACCATAGGAGTGTCTGTTG+TGG | 0.607425 | 2_1:-61758410 | None:intergenic |
| AAAACTACGTTGGTAGGGGA+AGG | 0.612097 | 2_1:+61757908 | Msa0216060:CDS |
| GCTTCGAAATTGAGAACAAG+CGG | 0.617144 | 2_1:-61758970 | None:intergenic |
| AACAAGTTTAGAAATACTTG+TGG | 0.618557 | 2_1:-61759327 | None:intergenic |
| CCATATATGATGTCTTTGAA+AGG | 0.621501 | 2_1:+61757791 | Msa0216060:CDS |
| CCATTGTTGAACATCACCAT+AGG | 0.630256 | 2_1:-61758424 | None:intergenic |
| AAGACTAATGAAAGCCAGAA+CGG | 0.634141 | 2_1:+61759138 | Msa0216060:CDS |
| CTATGATGATGGAAGAACAA+TGG | 0.634319 | 2_1:-61757013 | None:intergenic |
| ACCAAGTTAGTTGAAGAAGA+CGG | 0.644238 | 2_1:-61759107 | None:intergenic |
| CAGCCTTTGAGTTAAGATTG+CGG | 0.648649 | 2_1:-61758600 | None:intergenic |
| TACTCAGGTTACTTCACAGG+AGG | 0.658618 | 2_1:+61757089 | Msa0216060:CDS |
| GCAAATAAGATACCTCCCAA+AGG | 0.662067 | 2_1:-61759531 | None:intergenic |
| AGCAGTTCTGAATGAAACAG+TGG | 0.667363 | 2_1:-61757222 | None:intergenic |
| ACTCGTAATTATGCTCAACT+CGG | 0.677828 | 2_1:+61759441 | Msa0216060:CDS |
| CTGTAAAGATCATAGGCATG+CGG | 0.680972 | 2_1:-61759417 | None:intergenic |
| CCTTTCTCTCAGCAATCCAG+AGG | 0.683130 | 2_1:-61759161 | None:intergenic |
| CCTATGGTGATGTTCAACAA+TGG | 0.683459 | 2_1:+61758424 | Msa0216060:CDS |
| TGGAACACAGTTACGCTCTG+TGG | 0.689056 | 2_1:+61758621 | Msa0216060:CDS |
| GGTATATGAAAAGGTGCCTG+TGG | 0.700967 | 2_1:+61759623 | Msa0216060:CDS |
| CCTGAGTATTGATCACCAAG+AGG | 0.701913 | 2_1:-61757074 | None:intergenic |
| GCGGCAACCAATCATACACA+AGG | 0.708091 | 2_1:-61758581 | None:intergenic |
| GAGAACATGAAATCTTACGG+TGG | 0.722259 | 2_1:+61759279 | Msa0216060:CDS |
| AAGGAAGTATCAAAAGCACG+CGG | 0.756530 | 2_1:+61758710 | Msa0216060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATACTAATAGCATAAT+TGG | + | chr2_1:61758070-61758089 | Msa0216060:CDS | 15.0% |
| !! | ATTGAAAAGAAAGAAAAACA+TGG | - | chr2_1:61756946-61756965 | None:intergenic | 20.0% |
| !!! | CTATAACTATAATTTGCTTT+TGG | - | chr2_1:61757575-61757594 | None:intergenic | 20.0% |
| !! | AGCAAATTATAGTTATAGTT+TGG | + | chr2_1:61757577-61757596 | Msa0216060:CDS | 20.0% |
| !! | TTTCAAATAAAAGTGACTAT+TGG | + | chr2_1:61757864-61757883 | Msa0216060:CDS | 20.0% |
| !! | ATATCATAAGAATAAACATC+TGG | - | chr2_1:61758277-61758296 | None:intergenic | 20.0% |
| !!! | TTTTTGCTGTTATAATTTTG+AGG | - | chr2_1:61759003-61759022 | None:intergenic | 20.0% |
| !!! | AAGTGATGTTTTTGAGAAAA+AGG | + | chr2_1:61757634-61757653 | Msa0216060:CDS | 25.0% |
| !!! | AGTGATGTTTTTGAGAAAAA+GGG | + | chr2_1:61757635-61757654 | Msa0216060:CDS | 25.0% |
| ! | GAACAAAAACTTGATGAATA+TGG | - | chr2_1:61757674-61757693 | None:intergenic | 25.0% |
| !! | TTTTTATTGACCAAACTGAA+GGG | - | chr2_1:61758054-61758073 | None:intergenic | 25.0% |
| !!! | TTTTTTATTGACCAAACTGA+AGG | - | chr2_1:61758055-61758074 | None:intergenic | 25.0% |
| ! | ATAGCATAATTGGACAAATT+TGG | + | chr2_1:61758080-61758099 | Msa0216060:CDS | 25.0% |
| ! | TGATATGAGATTTGATATGT+TGG | + | chr2_1:61758291-61758310 | Msa0216060:CDS | 25.0% |
| ! | AAAACCATAGGAGTTAATAT+TGG | - | chr2_1:61758332-61758351 | None:intergenic | 25.0% |
| ! | TAAGGTTGAATTAGAAAGTA+TGG | - | chr2_1:61758479-61758498 | None:intergenic | 25.0% |
| ! | CTAATTCAACCTTATATAAC+CGG | + | chr2_1:61758485-61758504 | Msa0216060:CDS | 25.0% |
| ! | ACAAATTAAACACTGAATTC+CGG | - | chr2_1:61758507-61758526 | None:intergenic | 25.0% |
| !!! | TCTAAACTTTTGAAGTAAAG+AGG | - | chr2_1:61758748-61758767 | None:intergenic | 25.0% |
| ! | TTCTTCATTTGCAATTTACT+CGG | + | chr2_1:61758771-61758790 | Msa0216060:CDS | 25.0% |
| ! | ATCATGAAAATTGAGATGAA+GGG | - | chr2_1:61758922-61758941 | None:intergenic | 25.0% |
| ! | AAGTTAATGAAATAGCTGTA+AGG | + | chr2_1:61759052-61759071 | Msa0216060:CDS | 25.0% |
| ! | AACAAGTTTAGAAATACTTG+TGG | - | chr2_1:61759330-61759349 | None:intergenic | 25.0% |
| !! | CTTTCATGTTCATTTTACTT+TGG | + | chr2_1:61759372-61759391 | Msa0216060:CDS | 25.0% |
| !! | AGATTTTTACTCAACTACTT+GGG | + | chr2_1:61759497-61759516 | Msa0216060:CDS | 25.0% |
| !! | TGAAGAGTATTTGTTGTTGA+AGG | - | chr2_1:61757141-61757160 | None:intergenic | 30.0% |
| ! | CATGCATTTTTATGTGTCTA+AGG | - | chr2_1:61757169-61757188 | None:intergenic | 30.0% |
| ACATGATAGTAAACTGTGTT+TGG | - | chr2_1:61757248-61757267 | None:intergenic | 30.0% | |
| TTTGTAACTTTCAAGCTTGA+AGG | + | chr2_1:61757329-61757348 | Msa0216060:CDS | 30.0% | |
| TTGTAACTTTCAAGCTTGAA+GGG | + | chr2_1:61757330-61757349 | Msa0216060:CDS | 30.0% | |
| ! | ATCTTCTGGAAAAGTTTGTA+TGG | + | chr2_1:61757364-61757383 | Msa0216060:CDS | 30.0% |
| GGAATTAGTTATTCACAAAC+AGG | + | chr2_1:61757395-61757414 | Msa0216060:CDS | 30.0% | |
| ! | AACATCACTAGTTTGATTAG+TGG | + | chr2_1:61757473-61757492 | Msa0216060:CDS | 30.0% |
| GGAAACATCATTAGAGAAAT+TGG | - | chr2_1:61757554-61757573 | None:intergenic | 30.0% | |
| ! | GGCAATTGATAACTCATTAT+AGG | - | chr2_1:61757773-61757792 | None:intergenic | 30.0% |
| CCTTTCAAAGACATCATATA+TGG | - | chr2_1:61757794-61757813 | None:intergenic | 30.0% | |
| CCATATATGATGTCTTTGAA+AGG | + | chr2_1:61757791-61757810 | Msa0216060:CDS | 30.0% | |
| AGTGACTATTGGATTGAAAA+AGG | + | chr2_1:61757875-61757894 | Msa0216060:CDS | 30.0% | |
| ! | TTTTAATCCGAAAACTACGT+TGG | + | chr2_1:61757898-61757917 | Msa0216060:CDS | 30.0% |
| ATTTCATGATGCCAATGAAA+TGG | - | chr2_1:61757976-61757995 | None:intergenic | 30.0% | |
| GTTATCATCTTGAAGTAGTT+TGG | - | chr2_1:61758127-61758146 | None:intergenic | 30.0% | |
| TTAGAAATTTCGAAGATGAC+AGG | + | chr2_1:61758149-61758168 | Msa0216060:CDS | 30.0% | |
| TAGAAATTTCGAAGATGACA+GGG | + | chr2_1:61758150-61758169 | Msa0216060:CDS | 30.0% | |
| ATTTCTTAACTCTTTCAAGC+TGG | - | chr2_1:61758207-61758226 | None:intergenic | 30.0% | |
| AATGGATATGGAGATTATCA+TGG | + | chr2_1:61758819-61758838 | Msa0216060:CDS | 30.0% | |
| CATCATGAAAATTGAGATGA+AGG | - | chr2_1:61758923-61758942 | None:intergenic | 30.0% | |
| ATGATGTCAATTCTCACAAT+GGG | + | chr2_1:61758937-61758956 | Msa0216060:CDS | 30.0% | |
| AACAGCAAAAACTTTGTGTT+TGG | + | chr2_1:61759012-61759031 | Msa0216060:CDS | 30.0% | |
| AACTTTGTGTTTGGATATGT+TGG | + | chr2_1:61759021-61759040 | Msa0216060:CDS | 30.0% | |
| AGCTGTAAGGATTATAACAA+TGG | + | chr2_1:61759065-61759084 | Msa0216060:CDS | 30.0% | |
| AGTTTCAACAGAATTCATCT+TGG | + | chr2_1:61759256-61759275 | Msa0216060:CDS | 30.0% | |
| GTTTCAACAGAATTCATCTT+GGG | + | chr2_1:61759257-61759276 | Msa0216060:CDS | 30.0% | |
| GTAAAAATCTGCATTAGGAT+TGG | - | chr2_1:61759487-61759506 | None:intergenic | 30.0% | |
| GTTGAGTAAAAATCTGCATT+AGG | - | chr2_1:61759492-61759511 | None:intergenic | 30.0% | |
| ! | CAGATTTTTACTCAACTACT+TGG | + | chr2_1:61759496-61759515 | Msa0216060:CDS | 30.0% |
| TTTGATCCTTTGAATCTATG+AGG | - | chr2_1:61759603-61759622 | None:intergenic | 30.0% | |
| TCATAGATTCAAAGGATCAA+AGG | + | chr2_1:61759602-61759621 | Msa0216060:CDS | 30.0% | |
| ! | AGGATCAAAGGTATATGAAA+AGG | + | chr2_1:61759614-61759633 | Msa0216060:CDS | 30.0% |
| AGAAGGTTGTGATGAAGAAA+AGG | - | chr2_1:61756985-61757004 | None:intergenic | 35.0% | |
| GAACAATGGTCTTTGTAAGA+AGG | - | chr2_1:61757002-61757021 | None:intergenic | 35.0% | |
| !! | CTATGATGATGGAAGAACAA+TGG | - | chr2_1:61757016-61757035 | None:intergenic | 35.0% |
| TTATGGATGATGAGGTCTTT+GGG | - | chr2_1:61757047-61757066 | None:intergenic | 35.0% | |
| CATGTAAGCAACTTTAGCTA+TGG | + | chr2_1:61757263-61757282 | Msa0216060:CDS | 35.0% | |
| TCTGGAAAAGTTTGTATGGT+TGG | + | chr2_1:61757368-61757387 | Msa0216060:CDS | 35.0% | |
| AAAGTTTGTATGGTTGGAAC+AGG | + | chr2_1:61757374-61757393 | Msa0216060:CDS | 35.0% | |
| !! | AGAGAGTTTGAGTTCTGAAA+AGG | + | chr2_1:61757502-61757521 | Msa0216060:CDS | 35.0% |
| !! | GAGAGTTTGAGTTCTGAAAA+GGG | + | chr2_1:61757503-61757522 | Msa0216060:CDS | 35.0% |
| GTTCTCAAGAAAACAAGCAT+AGG | + | chr2_1:61757822-61757841 | Msa0216060:CDS | 35.0% | |
| ! | AGAAAACAAGCATAGGTTGA+AGG | + | chr2_1:61757829-61757848 | Msa0216060:CDS | 35.0% |
| ATCATGAAATCGTCCTTGAA+TGG | + | chr2_1:61757986-61758005 | Msa0216060:CDS | 35.0% | |
| GATTGAAATTCCCTTCAGTT+TGG | + | chr2_1:61758041-61758060 | Msa0216060:CDS | 35.0% | |
| ACAAGGTTGTCAAGAACAAA+GGG | + | chr2_1:61758239-61758258 | Msa0216060:CDS | 35.0% | |
| GAGTCCAATATTAACTCCTA+TGG | + | chr2_1:61758325-61758344 | Msa0216060:CDS | 35.0% | |
| TAAAGGAGCTGAAAAACCAT+AGG | - | chr2_1:61758344-61758363 | None:intergenic | 35.0% | |
| ! | TTTTCAGCTCCTTTATCTGT+TGG | + | chr2_1:61758349-61758368 | Msa0216060:CDS | 35.0% |
| ACTTGATCACCAACAGATAA+AGG | - | chr2_1:61758361-61758380 | None:intergenic | 35.0% | |
| ! | GTGGAATTTGAAATGGTAAC+AGG | - | chr2_1:61758394-61758413 | None:intergenic | 35.0% |
| GTCTGTTGTGGAATTTGAAA+TGG | - | chr2_1:61758401-61758420 | None:intergenic | 35.0% | |
| CACTGAATTCCGGTTATATA+AGG | - | chr2_1:61758497-61758516 | None:intergenic | 35.0% | |
| !! | CAGAAGGTACTTATGATTCA+AGG | + | chr2_1:61758551-61758570 | Msa0216060:CDS | 35.0% |
| GAAGTTTCAGTTTCCATCAT+TGG | + | chr2_1:61758660-61758679 | Msa0216060:CDS | 35.0% | |
| !!! | CCATTTTTTGCATCCAATGA+TGG | - | chr2_1:61758676-61758695 | None:intergenic | 35.0% |
| CCATCATTGGATGCAAAAAA+TGG | + | chr2_1:61758673-61758692 | Msa0216060:CDS | 35.0% | |
| AATGGAAGCTACGACATTAA+AGG | + | chr2_1:61758691-61758710 | Msa0216060:CDS | 35.0% | |
| CATGATGTCAATTCTCACAA+TGG | + | chr2_1:61758936-61758955 | Msa0216060:CDS | 35.0% | |
| TTGTGTTTGGATATGTTGGA+TGG | + | chr2_1:61759025-61759044 | Msa0216060:CDS | 35.0% | |
| ACCAAGTTAGTTGAAGAAGA+CGG | - | chr2_1:61759110-61759129 | None:intergenic | 35.0% | |
| AAGACTAATGAAAGCCAGAA+CGG | + | chr2_1:61759138-61759157 | Msa0216060:CDS | 35.0% | |
| ATAATCCAGCTGCATACAAA+GGG | - | chr2_1:61759203-61759222 | None:intergenic | 35.0% | |
| AATAATCCAGCTGCATACAA+AGG | - | chr2_1:61759204-61759223 | None:intergenic | 35.0% | |
| TGGGAGAACATGAAATCTTA+CGG | + | chr2_1:61759276-61759295 | Msa0216060:CDS | 35.0% | |
| ACTCGTAATTATGCTCAACT+CGG | + | chr2_1:61759441-61759460 | Msa0216060:CDS | 35.0% | |
| TTGGGATATTGTCATTCCTT+TGG | + | chr2_1:61759515-61759534 | Msa0216060:CDS | 35.0% | |
| TGGGATATTGTCATTCCTTT+GGG | + | chr2_1:61759516-61759535 | Msa0216060:CDS | 35.0% | |
| GTTATGGATGATGAGGTCTT+TGG | - | chr2_1:61757048-61757067 | None:intergenic | 40.0% | |
| GGAAAGAGTTATGGATGATG+AGG | - | chr2_1:61757055-61757074 | None:intergenic | 40.0% | |
| ATCCATAACTCTTTCCCTCT+TGG | + | chr2_1:61757059-61757078 | Msa0216060:CDS | 40.0% | |
| !! | CTGAGTATTGATCACCAAGA+GGG | - | chr2_1:61757076-61757095 | None:intergenic | 40.0% |
| CAATACTCAGGTTACTTCAC+AGG | + | chr2_1:61757086-61757105 | Msa0216060:CDS | 40.0% | |
| !! | AGCAGTTCTGAATGAAACAG+TGG | - | chr2_1:61757225-61757244 | None:intergenic | 40.0% |
| ! | CTTTCAAGCTTGAAGGGTTT+TGG | + | chr2_1:61757336-61757355 | Msa0216060:CDS | 40.0% |
| !! | GGGTTTTGGTCAAAATCTTC+TGG | + | chr2_1:61757350-61757369 | Msa0216060:CDS | 40.0% |
| CTTCTAATAGCTCTTGAGAG+TGG | - | chr2_1:61757701-61757720 | None:intergenic | 40.0% | |
| ! | GCATAGGTTGAAGGTTATGA+TGG | + | chr2_1:61757838-61757857 | Msa0216060:CDS | 40.0% |
| AATCCGAAAACTACGTTGGT+AGG | + | chr2_1:61757902-61757921 | Msa0216060:CDS | 40.0% | |
| ATCCGAAAACTACGTTGGTA+GGG | + | chr2_1:61757903-61757922 | Msa0216060:CDS | 40.0% | |
| ! | GTAGTTGCTTGCCATTTCAT+TGG | + | chr2_1:61757962-61757981 | Msa0216060:CDS | 40.0% |
| AATTTCGAAGATGACAGGGT+TGG | + | chr2_1:61758154-61758173 | Msa0216060:CDS | 40.0% | |
| CACAAGGTTGTCAAGAACAA+AGG | + | chr2_1:61758238-61758257 | Msa0216060:CDS | 40.0% | |
| CCATTGTTGAACATCACCAT+AGG | - | chr2_1:61758427-61758446 | None:intergenic | 40.0% | |
| ! | CCTATGGTGATGTTCAACAA+TGG | + | chr2_1:61758424-61758443 | Msa0216060:CDS | 40.0% |
| AGAGTGAAGATTTCAGCAGA+AGG | + | chr2_1:61758535-61758554 | Msa0216060:CDS | 40.0% | |
| GGTACTTATGATTCAAGGAC+AGG | + | chr2_1:61758556-61758575 | Msa0216060:CDS | 40.0% | |
| ACAGGAACCTTGTGTATGAT+TGG | + | chr2_1:61758574-61758593 | Msa0216060:CDS | 40.0% | |
| TTGCCGCAATCTTAACTCAA+AGG | + | chr2_1:61758597-61758616 | Msa0216060:CDS | 40.0% | |
| ! | CAGCCTTTGAGTTAAGATTG+CGG | - | chr2_1:61758603-61758622 | None:intergenic | 40.0% |
| !! | AAGGAAGTATCAAAAGCACG+CGG | + | chr2_1:61758710-61758729 | Msa0216060:CDS | 40.0% |
| AAACAGCGATAGAAGCTGTT+TGG | + | chr2_1:61758794-61758813 | Msa0216060:CDS | 40.0% | |
| GATAGAAGCTGTTTGGAGAA+TGG | + | chr2_1:61758801-61758820 | Msa0216060:CDS | 40.0% | |
| AGCTGTTTGGAGAATGGATA+TGG | + | chr2_1:61758807-61758826 | Msa0216060:CDS | 40.0% | |
| ! | ACTCTAGCATGTGTTTTCGT+CGG | + | chr2_1:61758856-61758875 | Msa0216060:CDS | 40.0% |
| ! | CATTAGGGTGTTTCTTGACA+TGG | - | chr2_1:61758894-61758913 | None:intergenic | 40.0% |
| ! | AGATGAAGGGAAGCACATTA+GGG | - | chr2_1:61758909-61758928 | None:intergenic | 40.0% |
| GCTTCGAAATTGAGAACAAG+CGG | - | chr2_1:61758973-61758992 | None:intergenic | 40.0% | |
| TCCGTCTTCTTCAACTAACT+TGG | + | chr2_1:61759106-61759125 | Msa0216060:CDS | 40.0% | |
| ! | ATTTTCCCTTTGTATGCAGC+TGG | + | chr2_1:61759195-61759214 | Msa0216060:CDS | 40.0% |
| GAGAACATGAAATCTTACGG+TGG | + | chr2_1:61759279-61759298 | Msa0216060:CDS | 40.0% | |
| CATGAAATCTTACGGTGGTT+TGG | + | chr2_1:61759284-61759303 | Msa0216060:CDS | 40.0% | |
| !! | ATCTTACGGTGGTTTGGTAT+TGG | + | chr2_1:61759290-61759309 | Msa0216060:CDS | 40.0% |
| CTGTAAAGATCATAGGCATG+CGG | - | chr2_1:61759420-61759439 | None:intergenic | 40.0% | |
| ACGAGTCCTGTAAAGATCAT+AGG | - | chr2_1:61759427-61759446 | None:intergenic | 40.0% | |
| GATATTGTCATTCCTTTGGG+AGG | + | chr2_1:61759519-61759538 | Msa0216060:CDS | 40.0% | |
| GCAAATAAGATACCTCCCAA+AGG | - | chr2_1:61759534-61759553 | None:intergenic | 40.0% | |
| ! | ATCTACTTGCAGCAACGTTT+TGG | + | chr2_1:61759561-61759580 | Msa0216060:CDS | 40.0% |
| GTTCTGCCTCATAGATTCAA+AGG | + | chr2_1:61759594-61759613 | Msa0216060:CDS | 40.0% | |
| ATCAGAAGCTGAAGTGCAAA+TGG | + | chr2_1:61759653-61759672 | Msa0216060:CDS | 40.0% | |
| ! | GGGAGTTGACTCTATGATGA+TGG | - | chr2_1:61757027-61757046 | None:intergenic | 45.0% |
| CACCAAGAGGGAAAGAGTTA+TGG | - | chr2_1:61757064-61757083 | None:intergenic | 45.0% | |
| !! | CCTGAGTATTGATCACCAAG+AGG | - | chr2_1:61757077-61757096 | None:intergenic | 45.0% |
| ! | CCTCTTGGTGATCAATACTC+AGG | + | chr2_1:61757074-61757093 | Msa0216060:CDS | 45.0% |
| TACTCAGGTTACTTCACAGG+AGG | + | chr2_1:61757089-61757108 | Msa0216060:CDS | 45.0% | |
| ! | TCCGAAAACTACGTTGGTAG+GGG | + | chr2_1:61757904-61757923 | Msa0216060:CDS | 45.0% |
| ! | TCCCCTACCAACGTAGTTTT+CGG | - | chr2_1:61757908-61757927 | None:intergenic | 45.0% |
| ! | AAAACTACGTTGGTAGGGGA+AGG | + | chr2_1:61757908-61757927 | Msa0216060:CDS | 45.0% |
| GAAATCATGTCCAGCACACA+AGG | + | chr2_1:61758222-61758241 | Msa0216060:CDS | 45.0% | |
| TTCTTGACAACCTTGTGTGC+TGG | - | chr2_1:61758235-61758254 | None:intergenic | 45.0% | |
| TTCCACAACAGACACTCCTA+TGG | + | chr2_1:61758408-61758427 | Msa0216060:CDS | 45.0% | |
| CGCAATCTTAACTCAAAGGC+TGG | + | chr2_1:61758601-61758620 | Msa0216060:CDS | 45.0% | |
| ! | GAGATGAAGGGAAGCACATT+AGG | - | chr2_1:61758910-61758929 | None:intergenic | 45.0% |
| !! | TACGGTGGTTTGGTATTGGA+TGG | + | chr2_1:61759294-61759313 | Msa0216060:CDS | 45.0% |
| CGCATGCCTATGATCTTTAC+AGG | + | chr2_1:61759418-61759437 | Msa0216060:CDS | 45.0% | |
| AATTATGCTCAACTCGGCGA+TGG | + | chr2_1:61759447-61759466 | Msa0216060:CDS | 45.0% | |
| !! | GGTATATGAAAAGGTGCCTG+TGG | + | chr2_1:61759623-61759642 | Msa0216060:CDS | 45.0% |
| !! | TGACGCTGACTTCGAGAACT+TGG | - | chr2_1:61757296-61757315 | None:intergenic | 50.0% |
| TCCTTGAATGGCATCCGTCT+TGG | + | chr2_1:61757998-61758017 | Msa0216060:CDS | 50.0% | |
| TTACCGAGCAATCGCCAAGA+CGG | - | chr2_1:61758015-61758034 | None:intergenic | 50.0% | |
| !! | CACCATAGGAGTGTCTGTTG+TGG | - | chr2_1:61758413-61758432 | None:intergenic | 50.0% |
| GCGGCAACCAATCATACACA+AGG | - | chr2_1:61758584-61758603 | None:intergenic | 50.0% | |
| TGGAACACAGTTACGCTCTG+TGG | + | chr2_1:61758621-61758640 | Msa0216060:CDS | 50.0% | |
| CCTTTCTCTCAGCAATCCAG+AGG | - | chr2_1:61759164-61759183 | None:intergenic | 50.0% | |
| CCTCTGGATTGCTGAGAGAA+AGG | + | chr2_1:61759161-61759180 | Msa0216060:CDS | 50.0% | |
| GCTTCTGATTCAGTCACCAC+AGG | - | chr2_1:61759642-61759661 | None:intergenic | 50.0% | |
| ! | CTACGTTGGTAGGGGAAGGT+TGG | + | chr2_1:61757912-61757931 | Msa0216060:CDS | 55.0% |
| ! | GTTGGTAGGGGAAGGTTGGT+GGG | + | chr2_1:61757916-61757935 | Msa0216060:CDS | 55.0% |
| GCCAAGACGGATGCCATTCA+AGG | - | chr2_1:61758002-61758021 | None:intergenic | 55.0% | |
| CATCCGTCTTGGCGATTGCT+CGG | + | chr2_1:61758009-61758028 | Msa0216060:CDS | 55.0% | |
| ATGAAAGCCAGAACGGCCTC+TGG | + | chr2_1:61759145-61759164 | Msa0216060:CDS | 55.0% | |
| ! | CGTTGGTAGGGGAAGGTTGG+TGG | + | chr2_1:61757915-61757934 | Msa0216060:CDS | 60.0% |
| CAGCAATCCAGAGGCCGTTC+TGG | - | chr2_1:61759155-61759174 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 61756927 | 61759680 | 61756927 | ID=Msa0216060;Name=Msa0216060 |
| chr2_1 | mRNA | 61756927 | 61759680 | 61756927 | ID=Msa0216060-mRNA-1;Parent=Msa0216060;Name=Msa0216060-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|917 |
| chr2_1 | exon | 61756927 | 61759680 | 61756927 | ID=Msa0216060-mRNA-1:exon:17028;Parent=Msa0216060-mRNA-1 |
| chr2_1 | CDS | 61756927 | 61759680 | 61756927 | ID=Msa0216060-mRNA-1:cds;Parent=Msa0216060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
