AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0388070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0388070 MtrunA17_Chr3g0110261 93.539 356 3 1 1 336 1 356 0.0 675
Msa0388070 MtrunA17_Chr6g0479141 84.270 356 36 1 1 336 1 356 0.0 625
Msa0388070 MtrunA17_Chr5g0434471 82.254 355 43 1 2 336 3 357 0.0 607
Msa0388070 MtrunA17_Chr2g0287211 74.157 356 72 1 1 336 57 412 0.0 562
Msa0388070 MtrunA17_Chr2g0287181 70.506 356 85 1 1 336 57 412 0.0 541
Msa0388070 MtrunA17_Chr8g0364341 69.091 55 17 0 232 286 9 63 6.98e-20 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0388070 AT5G37600.1 83.989 356 37 1 1 336 1 356 0.0 627
Msa0388070 AT1G66200.1 83.427 356 39 1 1 336 1 356 0.0 625
Msa0388070 AT5G16570.1 84.551 356 35 1 1 336 1 356 0.0 623
Msa0388070 AT1G66200.3 81.370 365 39 1 1 336 1 365 0.0 621
Msa0388070 AT3G17820.1 80.453 353 49 1 1 333 1 353 0.0 593
Msa0388070 AT5G35630.3 72.191 356 79 1 1 336 59 414 0.0 547
Msa0388070 AT5G35630.2 72.191 356 79 1 1 336 59 414 0.0 547
Msa0388070 AT5G35630.1 72.191 356 79 1 1 336 59 414 0.0 547
Msa0388070 AT1G48470.1 75.740 338 62 1 16 333 16 353 0.0 546
Msa0388070 AT1G66200.2 81.349 252 27 1 1 232 1 252 1.02e-153 432
Msa0388070 AT5G16570.2 81.172 239 25 1 1 219 1 239 5.55e-141 399

Find 136 sgRNAs with CRISPR-Local

Find 570 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCAAACCTTAATTGGTTT+TGG 0.177125 3_1:+92204812 None:intergenic
CTTTGACCCAAAACCAATTA+AGG 0.180257 3_1:-92204819 Msa0388070:intron
TGGAAATAGCAAACCTTAAT+TGG 0.193278 3_1:+92204806 None:intergenic
ATGGGTTGCTCGTTACATTT+TGG 0.219815 3_1:-92205004 Msa0388070:CDS
CTGACATTAACACCTTCTTA+TGG 0.238098 3_1:-92204399 Msa0388070:CDS
GTTGATTACGCATTAGAATT+TGG 0.259893 3_1:-92203989 Msa0388070:three_prime_UTR
ACTACTATAAATTTAACTTA+TGG 0.272583 3_1:-92203739 Msa0388070:three_prime_UTR
TTGGATTTGTGTTATTGTTA+TGG 0.290371 3_1:-92203947 Msa0388070:three_prime_UTR
CCTTCTTCCCTCATGGTCAT+TGG 0.292176 3_1:+92203785 None:intergenic
CTGAAAGGAGAGACATGTTT+TGG 0.292470 3_1:+92207508 None:intergenic
ACTTTGTTTGTTTGAATTTG+AGG 0.300071 3_1:-92203919 Msa0388070:three_prime_UTR
TCAAATCGAATCGAATCTTT+AGG 0.306816 3_1:-92207575 Msa0388070:five_prime_UTR
ATGTCTCTTGTTGGTGGGAA+TGG 0.309316 3_1:+92205836 None:intergenic
TTCAAACTTAGTAAAATCTA+AGG 0.315824 3_1:+92207538 None:intergenic
TCTCTGCTGGTGATGAGATA+TGG 0.322815 3_1:-92205023 Msa0388070:CDS
AAGGAGCACATTGCTGCTTA+TGG 0.324475 3_1:-92204463 Msa0388070:CDS
TAATGCAAAACTAGGGTGAT+TGG 0.338203 3_1:-92204678 Msa0388070:intron
TGAATTTGAGGCCTCGTTAT+AGG 0.356622 3_1:-92203907 Msa0388070:three_prime_UTR
TGACATTAACACCTTCTTAT+GGG 0.364511 3_1:-92204398 Msa0388070:intron
TGCATAATATATGCAAGGTC+TGG 0.368560 3_1:+92203669 None:intergenic
TTATTATTCTGACATTTACT+TGG 0.372035 3_1:+92203862 None:intergenic
AGCTGTGAAGGGTCAGTAAC+TGG 0.376973 3_1:+92206541 None:intergenic
GGTCTTATTTATAGCCTAGT+TGG 0.377270 3_1:+92207663 None:intergenic
GGCAGCTGCATGTCTCTTGT+TGG 0.378014 3_1:+92205827 None:intergenic
CATGTGTGTGTGGTGGCTTA+TGG 0.383641 3_1:+92204035 None:intergenic
TATGTCAGGATTGGTGGATC+TGG 0.389845 3_1:-92206721 Msa0388070:intron
GTGGGAATGGGTTCTCCAGC+TGG 0.392840 3_1:+92205849 None:intergenic
AGAATCTAACCATATGTATT+CGG 0.402832 3_1:+92207440 None:intergenic
CAGGATTGGTGGATCTGGTT+TGG 0.409454 3_1:-92206716 Msa0388070:CDS
TGAAAGCAATTGAGAAGCTT+GGG 0.410163 3_1:-92204495 Msa0388070:CDS
ATCATGGAAGTAACAACATA+TGG 0.411129 3_1:+92204083 None:intergenic
TCCAGGAGCTTGACCTGTGC+TGG 0.411245 3_1:+92206495 None:intergenic
CTGGTGCTCACACAAATTAC+AGG 0.417888 3_1:-92204648 Msa0388070:intron
AAAGACATCAATTGGCCTCT+TGG 0.419531 3_1:-92205636 Msa0388070:CDS
CCCTCAGTTGGTATCTCTGC+TGG 0.420001 3_1:-92205036 Msa0388070:CDS
TTGAAAGCAATTGAGAAGCT+TGG 0.420009 3_1:-92204496 Msa0388070:CDS
GGCAACGAGCGTAGATTGAC+AGG 0.421220 3_1:-92204436 Msa0388070:CDS
TGTTGCAGAAAGACATCAAT+TGG 0.424542 3_1:-92205644 Msa0388070:CDS
TGTCTCTTGTTGGTGGGAAT+GGG 0.425962 3_1:+92205837 None:intergenic
ATTCCTGCCTTCTTCCCTCA+TGG 0.426313 3_1:+92203778 None:intergenic
CTCTGCTGGTGATGAGATAT+GGG 0.426324 3_1:-92205022 Msa0388070:CDS
TAGAGGATCACTGAGGTTGC+TGG 0.429246 3_1:-92204854 Msa0388070:CDS
GCTGGTGCTGACAAGGCATT+TGG 0.430707 3_1:-92205279 Msa0388070:CDS
GCATAATATATGCAAGGTCT+GGG 0.444486 3_1:+92203670 None:intergenic
ATCAGGATGGCTGAAAATCT+TGG 0.445473 3_1:+92205806 None:intergenic
CGGTGGTTTCGGAGAGGTCA+AGG 0.456062 3_1:+92207475 None:intergenic
GTTCATTATGTCAGGATTGG+TGG 0.459850 3_1:-92206727 Msa0388070:intron
GTGGATCTGGTTTGGACTTG+AGG 0.460278 3_1:-92206708 Msa0388070:CDS
GGCTTATGGTTTCCAGAGAA+TGG 0.461165 3_1:+92204049 None:intergenic
CCTCTTGGTTGGCCAGTTGG+TGG 0.462411 3_1:-92205621 Msa0388070:CDS
AAATCATCGCCGAATACATA+TGG 0.465828 3_1:-92207449 Msa0388070:intron
AGCTGCATGTCTCTTGTTGG+TGG 0.467488 3_1:+92205830 None:intergenic
AATGGTGGTGTCTGCAATCA+TGG 0.470051 3_1:+92204067 None:intergenic
TCCAGCACAGGTCAAGCTCC+TGG 0.473336 3_1:-92206496 Msa0388070:CDS
TTGCAGACACCACCATTCTC+TGG 0.481231 3_1:-92204061 Msa0388070:CDS
TGGCCTCTTGGTTGGCCAGT+TGG 0.482222 3_1:-92205624 Msa0388070:CDS
AACTATGATGGTTCCAGCAC+AGG 0.485647 3_1:-92206508 Msa0388070:CDS
GGTACTTCAGCAACAACATC+AGG 0.488296 3_1:+92205789 None:intergenic
TTATTTGCTTACCCATAAGA+AGG 0.490705 3_1:+92204387 None:intergenic
TTCCACTTGGGAAGCTGTGA+AGG 0.498232 3_1:+92206529 None:intergenic
ACATCAATTGGCCTCTTGGT+TGG 0.505676 3_1:-92205632 Msa0388070:CDS
CCAATGACCATGAGGGAAGA+AGG 0.505889 3_1:-92203785 Msa0388070:three_prime_UTR
GAATCAAATGAAAACGAAAA+CGG 0.513020 3_1:+92207604 None:intergenic
GCACCAGCACCACAATAGTA+TGG 0.514601 3_1:+92205294 None:intergenic
GGAAGGGACACAGAGAAAGC+AGG 0.514679 3_1:-92204149 Msa0388070:CDS
TTGTGAGCTGCTCAGTTGGT+AGG 0.515130 3_1:+92203641 None:intergenic
ATCAACATCAGTGGAATCAA+TGG 0.515689 3_1:-92205210 Msa0388070:CDS
CTTCCCAAGTGGAACTATGA+TGG 0.516245 3_1:-92206520 Msa0388070:CDS
GGAAAGGTTATTTCGAGGAT+AGG 0.519246 3_1:-92204127 Msa0388070:CDS
CACATTGCTGCTTATGGAGA+AGG 0.521068 3_1:-92204457 Msa0388070:CDS
TACAAAGCCTGTCTTTATGC+CGG 0.521155 3_1:-92205234 Msa0388070:CDS
ACCAAGTCTATGAGAGAAGA+TGG 0.523810 3_1:-92204535 Msa0388070:CDS
TAGAGAAGGTGAGGAAGACT+AGG 0.524386 3_1:-92207696 Msa0388070:five_prime_UTR
GTTGATGCCGGCATAAAGAC+AGG 0.529739 3_1:+92205227 None:intergenic
GGACCATACTATTGTGGTGC+TGG 0.534606 3_1:-92205297 Msa0388070:CDS
ACAGAGAAATGAGGCAGTGT+GGG 0.535734 3_1:+92207641 None:intergenic
AAAAGATTATAGAGAAGGTG+AGG 0.538212 3_1:-92207705 Msa0388070:five_prime_UTR
TATGGATCCATGTTAGATGA+TGG 0.538723 3_1:+92204101 None:intergenic
GCTGCATGTCTCTTGTTGGT+GGG 0.539293 3_1:+92205831 None:intergenic
GGTCCAGGAAAACCACCAAC+TGG 0.540153 3_1:+92205609 None:intergenic
TTCCAAGTTGGTCCCTCAGT+TGG 0.551503 3_1:-92205048 Msa0388070:CDS
CGTGGTGCGTCGATTAGAGT+TGG 0.552602 3_1:-92204170 Msa0388070:CDS
ATAACTTCACTATCTTCTCC+AGG 0.553474 3_1:+92206478 None:intergenic
GATCACTGAGGTTGCTGGTG+TGG 0.554625 3_1:-92204849 Msa0388070:CDS
GATTCCACTGATGTTGATGC+CGG 0.555187 3_1:+92205215 None:intergenic
AGCAGGGAAAGGTTATTTCG+AGG 0.555891 3_1:-92204132 Msa0388070:CDS
AAGGTTATTTCGAGGATAGG+AGG 0.561130 3_1:-92204124 Msa0388070:CDS
GTCCTTGTGAGCTGCTCAGT+TGG 0.565947 3_1:+92203637 None:intergenic
TGACCATGAGGGAAGAAGGC+AGG 0.566416 3_1:-92203781 Msa0388070:three_prime_UTR
TGGACTTGAGGAGCAAAGCA+AGG 0.567464 3_1:-92206696 Msa0388070:CDS
ACCATCTTCTCTCATAGACT+TGG 0.571470 3_1:+92204534 None:intergenic
GGAACCATCATAGTTCCACT+TGG 0.572427 3_1:+92206516 None:intergenic
ATTGATGTCTTTCTGCAACA+AGG 0.574318 3_1:+92205647 None:intergenic
TTGTGGTGCTGGTGCTGACA+AGG 0.575827 3_1:-92205286 Msa0388070:CDS
TGTGATGCATACACTCCAGC+TGG 0.581505 3_1:-92205864 Msa0388070:CDS
TACCAACTGAGCAGCTCACA+AGG 0.581680 3_1:-92203639 Msa0388070:three_prime_UTR
TACCAACTGAGGGACCAACT+TGG 0.582203 3_1:+92205046 None:intergenic
GTGCGTCGATTAGAGTTGGA+AGG 0.584013 3_1:-92204166 Msa0388070:CDS
ATGTAGTGGGAATTCCAAGT+TGG 0.586154 3_1:-92205060 Msa0388070:intron
TAGGGTGATTGGAATGGTGC+TGG 0.586935 3_1:-92204667 Msa0388070:CDS
ATCAATGGTGAAGTGATGCC+TGG 0.592881 3_1:-92205195 Msa0388070:CDS
TACAATGCATAATATATGCA+AGG 0.595528 3_1:+92203664 None:intergenic
TCCACTTGGGAAGCTGTGAA+GGG 0.596916 3_1:+92206530 None:intergenic
GACACAGAGAAAGCAGGGAA+AGG 0.598045 3_1:-92204143 Msa0388070:CDS
GAAGGGTCAGTAACTGGACC+TGG 0.599215 3_1:+92206547 None:intergenic
CAATAGGGACCATACTATTG+TGG 0.601480 3_1:-92205303 Msa0388070:intron
ACCCTTCACAGCTTCCCAAG+TGG 0.605168 3_1:-92206531 Msa0388070:CDS
TAAGTCCAACTTACTTGACC+AGG 0.608274 3_1:+92205177 None:intergenic
GGACTTGAGGAGCAAAGCAA+GGG 0.609551 3_1:-92206695 Msa0388070:intron
CAACTCTAATCGACGCACCA+CGG 0.611739 3_1:+92204171 None:intergenic
CAAGGTTGATAAGATCTGAA+AGG 0.614499 3_1:+92207493 None:intergenic
TTCAATGCATGTGTGTGTGG+TGG 0.619576 3_1:+92204028 None:intergenic
TACTTCAATGCATGTGTGTG+TGG 0.619637 3_1:+92204025 None:intergenic
TAGGAGGCCATCATCTAACA+TGG 0.627480 3_1:-92204108 Msa0388070:CDS
CAAAACTAGGGTGATTGGAA+TGG 0.637511 3_1:-92204673 Msa0388070:intron
GAAGGGACACAGAGAAAGCA+GGG 0.638354 3_1:-92204148 Msa0388070:CDS
TGCGTCGATTAGAGTTGGAA+GGG 0.644595 3_1:-92204165 Msa0388070:CDS
GAACCATCATAGTTCCACTT+GGG 0.652093 3_1:+92206517 None:intergenic
AACAGAGAAATGAGGCAGTG+TGG 0.654868 3_1:+92207640 None:intergenic
TTGAAGGGTGTTGCAAACCG+TGG 0.663350 3_1:-92204188 Msa0388070:intron
TTATGGTTTCCAGAGAATGG+TGG 0.667248 3_1:+92204052 None:intergenic
ACCAGCAGAGATACCAACTG+AGG 0.670459 3_1:+92205035 None:intergenic
CCACCAACTGGCCAACCAAG+AGG 0.671238 3_1:+92205621 None:intergenic
CAGAGAAATGAGGCAGTGTG+GGG 0.672345 3_1:+92207642 None:intergenic
TATGCCGGCATCAACATCAG+TGG 0.676060 3_1:-92205219 Msa0388070:CDS
CTTCAGCAACAACATCAGGA+TGG 0.677550 3_1:+92205793 None:intergenic
CATAATATATGCAAGGTCTG+GGG 0.677890 3_1:+92203671 None:intergenic
CCAGCAGAGATACCAACTGA+GGG 0.678315 3_1:+92205036 None:intergenic
AATGTGAGTCAACAATGTCA+CGG 0.681181 3_1:+92205256 None:intergenic
TTGTTGTGAACAGAGAAATG+AGG 0.688616 3_1:+92207632 None:intergenic
GCAACGAGCGTAGATTGACA+GGG 0.702514 3_1:-92204435 Msa0388070:CDS
ATGTTGTTGCTGAAGTACCA+TGG 0.706598 3_1:-92205785 Msa0388070:intron
GAAGCTTGGGAAGAAGCACA+AGG 0.711059 3_1:-92204482 Msa0388070:CDS
GAAATATGAAACCTATAACG+AGG 0.728719 3_1:+92203896 None:intergenic
AAGTCTATGAGAGAAGATGG+TGG 0.739470 3_1:-92204532 Msa0388070:CDS
GTTCCAATAGAGGATCACTG+AGG 0.789699 3_1:-92204861 Msa0388070:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTATTGAAGATATAAA+TGG - chr3_1:92204751-92204770 Msa0388070:intron 10.0%
!! ACAAAATATATACATAATTA+AGG + chr3_1:92204937-92204956 None:intergenic 10.0%
!!! TATTATGATTTTTACTTATT+TGG - chr3_1:92204973-92204992 Msa0388070:intron 10.0%
!!! ATTATGATTTTTACTTATTT+GGG - chr3_1:92204974-92204993 Msa0388070:intron 10.0%
!!! TAAACAAATTTAAAACAATT+AGG + chr3_1:92205887-92205906 None:intergenic 10.0%
!! AAAAAAATAACATAAAACTA+TGG + chr3_1:92205912-92205931 None:intergenic 10.0%
!!! AATCAACAATAATTATTTTA+CGG + chr3_1:92207519-92207538 None:intergenic 10.0%
!! TAATTTATTGAAGATATAAA+TGG - chr3_1:92204751-92204770 Msa0388070:intron 10.0%
!! ACAAAATATATACATAATTA+AGG + chr3_1:92204937-92204956 None:intergenic 10.0%
!!! TATTATGATTTTTACTTATT+TGG - chr3_1:92204973-92204992 Msa0388070:intron 10.0%
!!! ATTATGATTTTTACTTATTT+GGG - chr3_1:92204974-92204993 Msa0388070:intron 10.0%
!!! TAAACAAATTTAAAACAATT+AGG + chr3_1:92205887-92205906 None:intergenic 10.0%
!! AAAAAAATAACATAAAACTA+TGG + chr3_1:92205912-92205931 None:intergenic 10.0%
!!! AATCAACAATAATTATTTTA+CGG + chr3_1:92207519-92207538 None:intergenic 10.0%
!!! ATAGATTTTTAAGTTGATTT+TGG - chr3_1:92204250-92204269 Msa0388070:intron 15.0%
!!! TAGATTTTTAAGTTGATTTT+GGG - chr3_1:92204251-92204270 Msa0388070:intron 15.0%
!!! TTTTTTGTTTGGAATAAAAT+TGG - chr3_1:92204396-92204415 Msa0388070:intron 15.0%
!! TGAACATAAATTAATCAAAA+GGG + chr3_1:92204601-92204620 None:intergenic 15.0%
!! ATGAACATAAATTAATCAAA+AGG + chr3_1:92204602-92204621 None:intergenic 15.0%
!!! TTATGATTTTTACTTATTTG+GGG - chr3_1:92204975-92204994 Msa0388070:intron 15.0%
!!! TAGTAATTTTGATACATTTA+AGG + chr3_1:92205142-92205161 None:intergenic 15.0%
!! ATTTAATTAAACACAAAAGA+GGG + chr3_1:92205449-92205468 None:intergenic 15.0%
!! AATTTAATTAAACACAAAAG+AGG + chr3_1:92205450-92205469 None:intergenic 15.0%
!!! TTTTGTGTTTAATTAAATTC+AGG - chr3_1:92205451-92205470 Msa0388070:intron 15.0%
!!! AATTTAAAACAATTAGGTAT+GGG + chr3_1:92205881-92205900 None:intergenic 15.0%
!!! AAATTTAAAACAATTAGGTA+TGG + chr3_1:92205882-92205901 None:intergenic 15.0%
!!! TATTTTATAATTTGCTCAAT+AGG - chr3_1:92206024-92206043 Msa0388070:intron 15.0%
!!! ATTTTATAATTTGCTCAATA+GGG - chr3_1:92206025-92206044 Msa0388070:intron 15.0%
!! TAGTAAATAATAATGCTAAA+GGG + chr3_1:92206197-92206216 None:intergenic 15.0%
!!! TATTGTTTTTTTAATGTAGT+GGG - chr3_1:92206270-92206289 Msa0388070:intron 15.0%
!!! TATTTTTTTAATGCAAAACT+AGG - chr3_1:92206657-92206676 Msa0388070:intron 15.0%
!!! ATTTTTTTAATGCAAAACTA+GGG - chr3_1:92206658-92206677 Msa0388070:intron 15.0%
!!! CTATAGTTGAATATTTTATA+TGG - chr3_1:92206749-92206768 Msa0388070:intron 15.0%
!!! TTTTCTTTTTTTTCTTTTCT+TGG + chr3_1:92206998-92207017 None:intergenic 15.0%
!!! ACTACTATAAATTTAACTTA+TGG - chr3_1:92207604-92207623 Msa0388070:five_prime_UTR 15.0%
!!! ATAGATTTTTAAGTTGATTT+TGG - chr3_1:92204250-92204269 Msa0388070:intron 15.0%
!!! TAGATTTTTAAGTTGATTTT+GGG - chr3_1:92204251-92204270 Msa0388070:intron 15.0%
!!! TTTTTTGTTTGGAATAAAAT+TGG - chr3_1:92204396-92204415 Msa0388070:intron 15.0%
!! TGAACATAAATTAATCAAAA+GGG + chr3_1:92204601-92204620 None:intergenic 15.0%
!! ATGAACATAAATTAATCAAA+AGG + chr3_1:92204602-92204621 None:intergenic 15.0%
!!! TTATGATTTTTACTTATTTG+GGG - chr3_1:92204975-92204994 Msa0388070:intron 15.0%
!!! TAGTAATTTTGATACATTTA+AGG + chr3_1:92205142-92205161 None:intergenic 15.0%
!! ATTTAATTAAACACAAAAGA+GGG + chr3_1:92205449-92205468 None:intergenic 15.0%
!! AATTTAATTAAACACAAAAG+AGG + chr3_1:92205450-92205469 None:intergenic 15.0%
!!! TTTTGTGTTTAATTAAATTC+AGG - chr3_1:92205451-92205470 Msa0388070:intron 15.0%
!!! AATTTAAAACAATTAGGTAT+GGG + chr3_1:92205881-92205900 None:intergenic 15.0%
!!! AAATTTAAAACAATTAGGTA+TGG + chr3_1:92205882-92205901 None:intergenic 15.0%
!!! TATTTTATAATTTGCTCAAT+AGG - chr3_1:92206024-92206043 Msa0388070:intron 15.0%
!!! ATTTTATAATTTGCTCAATA+GGG - chr3_1:92206025-92206044 Msa0388070:intron 15.0%
!! TAGTAAATAATAATGCTAAA+GGG + chr3_1:92206197-92206216 None:intergenic 15.0%
!!! TATTGTTTTTTTAATGTAGT+GGG - chr3_1:92206270-92206289 Msa0388070:intron 15.0%
!!! TATTTTTTTAATGCAAAACT+AGG - chr3_1:92206657-92206676 Msa0388070:intron 15.0%
!!! ATTTTTTTAATGCAAAACTA+GGG - chr3_1:92206658-92206677 Msa0388070:intron 15.0%
!!! CTATAGTTGAATATTTTATA+TGG - chr3_1:92206749-92206768 Msa0388070:intron 15.0%
!!! TTTTCTTTTTTTTCTTTTCT+TGG + chr3_1:92206998-92207017 None:intergenic 15.0%
!!! ACTACTATAAATTTAACTTA+TGG - chr3_1:92207604-92207623 Msa0388070:five_prime_UTR 15.0%
!! TTCAAACTTAGTAAAATCTA+AGG + chr3_1:92203808-92203827 None:intergenic 20.0%
!!! CTCTCTTTTTTTAGTTATTT+TGG - chr3_1:92204192-92204211 Msa0388070:intron 20.0%
!!! AATGACTTTGTTTTTTTGTT+TGG - chr3_1:92204385-92204404 Msa0388070:intron 20.0%
!! AAGAATTTAATATCATGGTT+TGG + chr3_1:92204535-92204554 None:intergenic 20.0%
!! GAACATAAATTAATCAAAAG+GGG + chr3_1:92204600-92204619 None:intergenic 20.0%
!! TAATTTATGTTCATTATGTC+AGG - chr3_1:92204608-92204627 Msa0388070:intron 20.0%
!!! AAGATATAAATGGCTTTTTT+TGG - chr3_1:92204761-92204780 Msa0388070:intron 20.0%
!!! AGATATAAATGGCTTTTTTT+GGG - chr3_1:92204762-92204781 Msa0388070:intron 20.0%
!!! TATTTTGTTCTCTATTTTCT+TGG - chr3_1:92204949-92204968 Msa0388070:intron 20.0%
!!! TTGTCTTTTGTTAATTAGTT+TGG - chr3_1:92205207-92205226 Msa0388070:CDS 20.0%
!! GTAGTAAATAATAATGCTAA+AGG + chr3_1:92206198-92206217 None:intergenic 20.0%
!!! CTATTGTTTTTTTAATGTAG+TGG - chr3_1:92206269-92206288 Msa0388070:intron 20.0%
!! TATAAGACAAGTATATCAAT+TGG + chr3_1:92206614-92206633 None:intergenic 20.0%
!!! TTGAATATTTTATATGGTCA+TGG - chr3_1:92206755-92206774 Msa0388070:intron 20.0%
!!! TTTTTTGTTGTTCTAATTGT+TGG - chr3_1:92207117-92207136 Msa0388070:intron 20.0%
!! TTATTATTCTGACATTTACT+TGG + chr3_1:92207484-92207503 None:intergenic 20.0%
!! TTCAAACTTAGTAAAATCTA+AGG + chr3_1:92203808-92203827 None:intergenic 20.0%
!!! CTCTCTTTTTTTAGTTATTT+TGG - chr3_1:92204192-92204211 Msa0388070:intron 20.0%
!!! AATGACTTTGTTTTTTTGTT+TGG - chr3_1:92204385-92204404 Msa0388070:intron 20.0%
!! AAGAATTTAATATCATGGTT+TGG + chr3_1:92204535-92204554 None:intergenic 20.0%
!! GAACATAAATTAATCAAAAG+GGG + chr3_1:92204600-92204619 None:intergenic 20.0%
!! TAATTTATGTTCATTATGTC+AGG - chr3_1:92204608-92204627 Msa0388070:intron 20.0%
!!! AAGATATAAATGGCTTTTTT+TGG - chr3_1:92204761-92204780 Msa0388070:intron 20.0%
!!! AGATATAAATGGCTTTTTTT+GGG - chr3_1:92204762-92204781 Msa0388070:intron 20.0%
!!! TATTTTGTTCTCTATTTTCT+TGG - chr3_1:92204949-92204968 Msa0388070:intron 20.0%
!!! TTGTCTTTTGTTAATTAGTT+TGG - chr3_1:92205207-92205226 Msa0388070:CDS 20.0%
!! GTAGTAAATAATAATGCTAA+AGG + chr3_1:92206198-92206217 None:intergenic 20.0%
!!! CTATTGTTTTTTTAATGTAG+TGG - chr3_1:92206269-92206288 Msa0388070:intron 20.0%
!! TATAAGACAAGTATATCAAT+TGG + chr3_1:92206614-92206633 None:intergenic 20.0%
!!! TTGAATATTTTATATGGTCA+TGG - chr3_1:92206755-92206774 Msa0388070:intron 20.0%
!!! TTTTTTGTTGTTCTAATTGT+TGG - chr3_1:92207117-92207136 Msa0388070:intron 20.0%
!! TTATTATTCTGACATTTACT+TGG + chr3_1:92207484-92207503 None:intergenic 20.0%
! GAATCAAATGAAAACGAAAA+CGG + chr3_1:92203742-92203761 None:intergenic 25.0%
! AGAATCTAACCATATGTATT+CGG + chr3_1:92203906-92203925 None:intergenic 25.0%
! AAAAGAGAGAAAATAATCAC+TGG + chr3_1:92204181-92204200 None:intergenic 25.0%
! AGAACAGAAAAAATCATCAT+GGG + chr3_1:92204313-92204332 None:intergenic 25.0%
!!! TTTAATATCATGGTTTGGTT+TGG + chr3_1:92204530-92204549 None:intergenic 25.0%
!! TTGTTGTATGATTTGTGATT+AGG - chr3_1:92205651-92205670 Msa0388070:CDS 25.0%
! TGCACAATCATATAAGAAAA+TGG - chr3_1:92205820-92205839 Msa0388070:CDS 25.0%
!! TGGTGAATTTTTATTGTCAT+TGG - chr3_1:92205964-92205983 Msa0388070:intron 25.0%
! AACAAAGAAAGTTAGTTAGT+TGG + chr3_1:92206459-92206478 None:intergenic 25.0%
! GAATAACTTGATTCAAACTA+GGG + chr3_1:92206563-92206582 None:intergenic 25.0%
! AGAATAACTTGATTCAAACT+AGG + chr3_1:92206564-92206583 None:intergenic 25.0%
! AAAAACAAATGTTACAGACT+AGG + chr3_1:92207097-92207116 None:intergenic 25.0%
!!! ATTTGGTCATTGTTTTTTCT+AGG - chr3_1:92207371-92207390 Msa0388070:intron 25.0%
!!! TCATTGTTTTTTCTAGGATT+TGG - chr3_1:92207377-92207396 Msa0388070:intron 25.0%
!! TTGGATTTGTGTTATTGTTA+TGG - chr3_1:92207396-92207415 Msa0388070:intron 25.0%
!! ACTTTGTTTGTTTGAATTTG+AGG - chr3_1:92207424-92207443 Msa0388070:intron 25.0%
!!! CTTTTTGGTTGGATTTTTTT+TGG - chr3_1:92207634-92207653 Msa0388070:five_prime_UTR 25.0%
! TACAATGCATAATATATGCA+AGG + chr3_1:92207682-92207701 None:intergenic 25.0%
! GAATCAAATGAAAACGAAAA+CGG + chr3_1:92203742-92203761 None:intergenic 25.0%
! AGAATCTAACCATATGTATT+CGG + chr3_1:92203906-92203925 None:intergenic 25.0%
! AAAAGAGAGAAAATAATCAC+TGG + chr3_1:92204181-92204200 None:intergenic 25.0%
! AGAACAGAAAAAATCATCAT+GGG + chr3_1:92204313-92204332 None:intergenic 25.0%
!!! TTTAATATCATGGTTTGGTT+TGG + chr3_1:92204530-92204549 None:intergenic 25.0%
!! TTGTTGTATGATTTGTGATT+AGG - chr3_1:92205651-92205670 Msa0388070:CDS 25.0%
! TGCACAATCATATAAGAAAA+TGG - chr3_1:92205820-92205839 Msa0388070:CDS 25.0%
!! TGGTGAATTTTTATTGTCAT+TGG - chr3_1:92205964-92205983 Msa0388070:intron 25.0%
! AACAAAGAAAGTTAGTTAGT+TGG + chr3_1:92206459-92206478 None:intergenic 25.0%
! GAATAACTTGATTCAAACTA+GGG + chr3_1:92206563-92206582 None:intergenic 25.0%
! AGAATAACTTGATTCAAACT+AGG + chr3_1:92206564-92206583 None:intergenic 25.0%
! AAAAACAAATGTTACAGACT+AGG + chr3_1:92207097-92207116 None:intergenic 25.0%
!!! ATTTGGTCATTGTTTTTTCT+AGG - chr3_1:92207371-92207390 Msa0388070:intron 25.0%
!!! TCATTGTTTTTTCTAGGATT+TGG - chr3_1:92207377-92207396 Msa0388070:intron 25.0%
!! TTGGATTTGTGTTATTGTTA+TGG - chr3_1:92207396-92207415 Msa0388070:intron 25.0%
!! ACTTTGTTTGTTTGAATTTG+AGG - chr3_1:92207424-92207443 Msa0388070:intron 25.0%
!!! CTTTTTGGTTGGATTTTTTT+TGG - chr3_1:92207634-92207653 Msa0388070:five_prime_UTR 25.0%
! TACAATGCATAATATATGCA+AGG + chr3_1:92207682-92207701 None:intergenic 25.0%
AAAAGATTATAGAGAAGGTG+AGG - chr3_1:92203638-92203657 Msa0388070:three_prime_UTR 30.0%
TCAAATCGAATCGAATCTTT+AGG - chr3_1:92203768-92203787 Msa0388070:three_prime_UTR 30.0%
!! TTTTGTTTGTAAGCATGTGA+GGG + chr3_1:92203939-92203958 None:intergenic 30.0%
!! TTTTTGTTTGTAAGCATGTG+AGG + chr3_1:92203940-92203959 None:intergenic 30.0%
! ATGATTCTAGAAAAACGTTG+CGG + chr3_1:92204080-92204099 None:intergenic 30.0%
!!! TAAGTTGATTTTGGGATATG+AGG - chr3_1:92204259-92204278 Msa0388070:intron 30.0%
CAGAACAGAAAAAATCATCA+TGG + chr3_1:92204314-92204333 None:intergenic 30.0%
!!! TGTTTTTTGATGGTTGAGTA+TGG - chr3_1:92204338-92204357 Msa0388070:intron 30.0%
CGCACAAGAATTTAATATCA+TGG + chr3_1:92204540-92204559 None:intergenic 30.0%
TATGTTCATTATGTCAGGAT+TGG - chr3_1:92204613-92204632 Msa0388070:intron 30.0%
!! GATTTTTACTTATTTGGGGT+TGG - chr3_1:92204979-92204998 Msa0388070:intron 30.0%
TCTAAATGGATCCTTGAAAA+TGG + chr3_1:92205024-92205043 None:intergenic 30.0%
!! TTTTCAAGGATCCATTTAGA+AGG - chr3_1:92205024-92205043 Msa0388070:CDS 30.0%
TTTCAAGGATCCATTTAGAA+GGG - chr3_1:92205025-92205044 Msa0388070:CDS 30.0%
ATATTGTTACCCCTTCTAAA+TGG + chr3_1:92205038-92205057 None:intergenic 30.0%
ATACATTTAAGGACTAACGA+CGG + chr3_1:92205131-92205150 None:intergenic 30.0%
CAGATGATTCAATATACAAC+AGG + chr3_1:92205365-92205384 None:intergenic 30.0%
! GTATGATTTGTGATTAGGTA+TGG - chr3_1:92205656-92205675 Msa0388070:CDS 30.0%
TCTCATATTATTACCACTCA+TGG + chr3_1:92205851-92205870 None:intergenic 30.0%
! CTCAATTTGAACTTGTCTTT+TGG - chr3_1:92205944-92205963 Msa0388070:intron 30.0%
! AATAAGTCAAAAAGAGGTGT+TGG + chr3_1:92206412-92206431 None:intergenic 30.0%
CCATTCAATAAGTCAAAAAG+AGG + chr3_1:92206418-92206437 None:intergenic 30.0%
!!! CCTCTTTTTGACTTATTGAA+TGG - chr3_1:92206415-92206434 Msa0388070:intron 30.0%
! CTTTGTTTATGTTCCAATAG+AGG - chr3_1:92206472-92206491 Msa0388070:intron 30.0%
!!! AGCAAACCTTAATTGGTTTT+GGG + chr3_1:92206533-92206552 None:intergenic 30.0%
!! TAGCAAACCTTAATTGGTTT+TGG + chr3_1:92206534-92206553 None:intergenic 30.0%
TGGAAATAGCAAACCTTAAT+TGG + chr3_1:92206540-92206559 None:intergenic 30.0%
TATATCAATTGGAAAGGAGT+TGG + chr3_1:92206603-92206622 None:intergenic 30.0%
GACAAGTATATCAATTGGAA+AGG + chr3_1:92206609-92206628 None:intergenic 30.0%
TGACATTAACACCTTCTTAT+GGG - chr3_1:92206945-92206964 Msa0388070:intron 30.0%
TTATTTGCTTACCCATAAGA+AGG + chr3_1:92206959-92206978 None:intergenic 30.0%
ATACGTAGTAGACTTGAAAT+CGG + chr3_1:92207045-92207064 None:intergenic 30.0%
! ATTTCAAGTCTACTACGTAT+GGG - chr3_1:92207045-92207064 Msa0388070:intron 30.0%
ATCATGGAAGTAACAACATA+TGG + chr3_1:92207263-92207282 None:intergenic 30.0%
GTTGATTACGCATTAGAATT+TGG - chr3_1:92207354-92207373 Msa0388070:intron 30.0%
GAAATATGAAACCTATAACG+AGG + chr3_1:92207450-92207469 None:intergenic 30.0%
!! ACTTATGGACAACTACTTTT+TGG - chr3_1:92207619-92207638 Msa0388070:five_prime_UTR 30.0%
!!! TTTGGTTGGATTTTTTTTGG+TGG - chr3_1:92207637-92207656 Msa0388070:five_prime_UTR 30.0%
AAAAGATTATAGAGAAGGTG+AGG - chr3_1:92203638-92203657 Msa0388070:three_prime_UTR 30.0%
TCAAATCGAATCGAATCTTT+AGG - chr3_1:92203768-92203787 Msa0388070:three_prime_UTR 30.0%
!! TTTTGTTTGTAAGCATGTGA+GGG + chr3_1:92203939-92203958 None:intergenic 30.0%
!! TTTTTGTTTGTAAGCATGTG+AGG + chr3_1:92203940-92203959 None:intergenic 30.0%
! ATGATTCTAGAAAAACGTTG+CGG + chr3_1:92204080-92204099 None:intergenic 30.0%
!!! TAAGTTGATTTTGGGATATG+AGG - chr3_1:92204259-92204278 Msa0388070:intron 30.0%
CAGAACAGAAAAAATCATCA+TGG + chr3_1:92204314-92204333 None:intergenic 30.0%
!!! TGTTTTTTGATGGTTGAGTA+TGG - chr3_1:92204338-92204357 Msa0388070:intron 30.0%
CGCACAAGAATTTAATATCA+TGG + chr3_1:92204540-92204559 None:intergenic 30.0%
TATGTTCATTATGTCAGGAT+TGG - chr3_1:92204613-92204632 Msa0388070:intron 30.0%
!! GATTTTTACTTATTTGGGGT+TGG - chr3_1:92204979-92204998 Msa0388070:intron 30.0%
TCTAAATGGATCCTTGAAAA+TGG + chr3_1:92205024-92205043 None:intergenic 30.0%
!! TTTTCAAGGATCCATTTAGA+AGG - chr3_1:92205024-92205043 Msa0388070:CDS 30.0%
TTTCAAGGATCCATTTAGAA+GGG - chr3_1:92205025-92205044 Msa0388070:CDS 30.0%
ATATTGTTACCCCTTCTAAA+TGG + chr3_1:92205038-92205057 None:intergenic 30.0%
ATACATTTAAGGACTAACGA+CGG + chr3_1:92205131-92205150 None:intergenic 30.0%
CAGATGATTCAATATACAAC+AGG + chr3_1:92205365-92205384 None:intergenic 30.0%
! GTATGATTTGTGATTAGGTA+TGG - chr3_1:92205656-92205675 Msa0388070:CDS 30.0%
TCTCATATTATTACCACTCA+TGG + chr3_1:92205851-92205870 None:intergenic 30.0%
! CTCAATTTGAACTTGTCTTT+TGG - chr3_1:92205944-92205963 Msa0388070:intron 30.0%
! AATAAGTCAAAAAGAGGTGT+TGG + chr3_1:92206412-92206431 None:intergenic 30.0%
CCATTCAATAAGTCAAAAAG+AGG + chr3_1:92206418-92206437 None:intergenic 30.0%
!!! CCTCTTTTTGACTTATTGAA+TGG - chr3_1:92206415-92206434 Msa0388070:intron 30.0%
! CTTTGTTTATGTTCCAATAG+AGG - chr3_1:92206472-92206491 Msa0388070:intron 30.0%
!!! AGCAAACCTTAATTGGTTTT+GGG + chr3_1:92206533-92206552 None:intergenic 30.0%
!! TAGCAAACCTTAATTGGTTT+TGG + chr3_1:92206534-92206553 None:intergenic 30.0%
TGGAAATAGCAAACCTTAAT+TGG + chr3_1:92206540-92206559 None:intergenic 30.0%
TATATCAATTGGAAAGGAGT+TGG + chr3_1:92206603-92206622 None:intergenic 30.0%
GACAAGTATATCAATTGGAA+AGG + chr3_1:92206609-92206628 None:intergenic 30.0%
TGACATTAACACCTTCTTAT+GGG - chr3_1:92206945-92206964 Msa0388070:intron 30.0%
TTATTTGCTTACCCATAAGA+AGG + chr3_1:92206959-92206978 None:intergenic 30.0%
ATACGTAGTAGACTTGAAAT+CGG + chr3_1:92207045-92207064 None:intergenic 30.0%
! ATTTCAAGTCTACTACGTAT+GGG - chr3_1:92207045-92207064 Msa0388070:intron 30.0%
ATCATGGAAGTAACAACATA+TGG + chr3_1:92207263-92207282 None:intergenic 30.0%
GTTGATTACGCATTAGAATT+TGG - chr3_1:92207354-92207373 Msa0388070:intron 30.0%
GAAATATGAAACCTATAACG+AGG + chr3_1:92207450-92207469 None:intergenic 30.0%
!! ACTTATGGACAACTACTTTT+TGG - chr3_1:92207619-92207638 Msa0388070:five_prime_UTR 30.0%
!!! TTTGGTTGGATTTTTTTTGG+TGG - chr3_1:92207637-92207656 Msa0388070:five_prime_UTR 30.0%
TAGGAACAGAAAAACCAACT+AGG - chr3_1:92203666-92203685 Msa0388070:three_prime_UTR 35.0%
!! GGTCTTATTTATAGCCTAGT+TGG + chr3_1:92203683-92203702 None:intergenic 35.0%
TTGTTGTGAACAGAGAAATG+AGG + chr3_1:92203714-92203733 None:intergenic 35.0%
!! CAAGGTTGATAAGATCTGAA+AGG + chr3_1:92203853-92203872 None:intergenic 35.0%
AAATCATCGCCGAATACATA+TGG - chr3_1:92203894-92203913 Msa0388070:three_prime_UTR 35.0%
! AGTAGTGTTTTTCGTACGTA+CGG + chr3_1:92204012-92204031 None:intergenic 35.0%
!! TTTGGGATATGAGGATGTTT+TGG - chr3_1:92204268-92204287 Msa0388070:intron 35.0%
!!! GTTCTGACTCTGTTTTTTGA+TGG - chr3_1:92204328-92204347 Msa0388070:intron 35.0%
TATTGTACTTAGTGGTAGAC+TGG + chr3_1:92204502-92204521 None:intergenic 35.0%
!! TGGTTTGGTATTGTACTTAG+TGG + chr3_1:92204510-92204529 None:intergenic 35.0%
!! TATCATGGTTTGGTTTGGTT+TGG + chr3_1:92204525-92204544 None:intergenic 35.0%
ATAACTTCACTATCTTCTCC+AGG + chr3_1:92204868-92204887 None:intergenic 35.0%
TTCAAGGATCCATTTAGAAG+GGG - chr3_1:92205026-92205045 Msa0388070:CDS 35.0%
TAGAAGGGGTAACAATATCT+TGG - chr3_1:92205040-92205059 Msa0388070:CDS 35.0%
GTGTGTCTTGGAAAACATAT+TGG + chr3_1:92205237-92205256 None:intergenic 35.0%
AGTAGCAACAAAAGATACCA+TGG + chr3_1:92205578-92205597 None:intergenic 35.0%
ACAGTAAACAAGTGGCAAAA+AGG + chr3_1:92205617-92205636 None:intergenic 35.0%
ATCAGAACACAGTAAACAAG+TGG + chr3_1:92205625-92205644 None:intergenic 35.0%
ATTGATGTCTTTCTGCAACA+AGG + chr3_1:92205699-92205718 None:intergenic 35.0%
TGTTGCAGAAAGACATCAAT+TGG - chr3_1:92205699-92205718 Msa0388070:intron 35.0%
AATGTGAGTCAACAATGTCA+CGG + chr3_1:92206090-92206109 None:intergenic 35.0%
ATCAACATCAGTGGAATCAA+TGG - chr3_1:92206133-92206152 Msa0388070:intron 35.0%
GAAAGTTAGTTAGTTGGAGA+AGG + chr3_1:92206453-92206472 None:intergenic 35.0%
!!! CTTAATTGGTTTTGGGTCAA+AGG + chr3_1:92206526-92206545 None:intergenic 35.0%
CTTTGACCCAAAACCAATTA+AGG - chr3_1:92206524-92206543 Msa0388070:CDS 35.0%
TAACTTGATTCAAACTAGGG+TGG + chr3_1:92206560-92206579 None:intergenic 35.0%
TAATGCAAAACTAGGGTGAT+TGG - chr3_1:92206665-92206684 Msa0388070:intron 35.0%
TTGAAAGCAATTGAGAAGCT+TGG - chr3_1:92206847-92206866 Msa0388070:intron 35.0%
TGAAAGCAATTGAGAAGCTT+GGG - chr3_1:92206848-92206867 Msa0388070:intron 35.0%
CTGACATTAACACCTTCTTA+TGG - chr3_1:92206944-92206963 Msa0388070:intron 35.0%
! GATTTCAAGTCTACTACGTA+TGG - chr3_1:92207044-92207063 Msa0388070:intron 35.0%
! TTTCAAGTCTACTACGTATG+GGG - chr3_1:92207046-92207065 Msa0388070:intron 35.0%
TATGGATCCATGTTAGATGA+TGG + chr3_1:92207245-92207264 None:intergenic 35.0%
AAAAATGCCAATGACCATGA+GGG - chr3_1:92207551-92207570 Msa0388070:five_prime_UTR 35.0%
!!! ATGGACAACTACTTTTTGGT+TGG - chr3_1:92207623-92207642 Msa0388070:five_prime_UTR 35.0%
!!! GTTGGATTTTTTTTGGTGGT+CGG - chr3_1:92207641-92207660 Msa0388070:five_prime_UTR 35.0%
!!! TTGGATTTTTTTTGGTGGTC+GGG - chr3_1:92207642-92207661 Msa0388070:five_prime_UTR 35.0%
CATAATATATGCAAGGTCTG+GGG + chr3_1:92207675-92207694 None:intergenic 35.0%
GCATAATATATGCAAGGTCT+GGG + chr3_1:92207676-92207695 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+TGG + chr3_1:92207677-92207696 None:intergenic 35.0%
TAGGAACAGAAAAACCAACT+AGG - chr3_1:92203666-92203685 Msa0388070:three_prime_UTR 35.0%
!! GGTCTTATTTATAGCCTAGT+TGG + chr3_1:92203683-92203702 None:intergenic 35.0%
TTGTTGTGAACAGAGAAATG+AGG + chr3_1:92203714-92203733 None:intergenic 35.0%
!! CAAGGTTGATAAGATCTGAA+AGG + chr3_1:92203853-92203872 None:intergenic 35.0%
AAATCATCGCCGAATACATA+TGG - chr3_1:92203894-92203913 Msa0388070:three_prime_UTR 35.0%
! AGTAGTGTTTTTCGTACGTA+CGG + chr3_1:92204012-92204031 None:intergenic 35.0%
!! TTTGGGATATGAGGATGTTT+TGG - chr3_1:92204268-92204287 Msa0388070:intron 35.0%
!!! GTTCTGACTCTGTTTTTTGA+TGG - chr3_1:92204328-92204347 Msa0388070:intron 35.0%
TATTGTACTTAGTGGTAGAC+TGG + chr3_1:92204502-92204521 None:intergenic 35.0%
!! TGGTTTGGTATTGTACTTAG+TGG + chr3_1:92204510-92204529 None:intergenic 35.0%
!! TATCATGGTTTGGTTTGGTT+TGG + chr3_1:92204525-92204544 None:intergenic 35.0%
ATAACTTCACTATCTTCTCC+AGG + chr3_1:92204868-92204887 None:intergenic 35.0%
TTCAAGGATCCATTTAGAAG+GGG - chr3_1:92205026-92205045 Msa0388070:CDS 35.0%
TAGAAGGGGTAACAATATCT+TGG - chr3_1:92205040-92205059 Msa0388070:CDS 35.0%
GTGTGTCTTGGAAAACATAT+TGG + chr3_1:92205237-92205256 None:intergenic 35.0%
AGTAGCAACAAAAGATACCA+TGG + chr3_1:92205578-92205597 None:intergenic 35.0%
ACAGTAAACAAGTGGCAAAA+AGG + chr3_1:92205617-92205636 None:intergenic 35.0%
ATCAGAACACAGTAAACAAG+TGG + chr3_1:92205625-92205644 None:intergenic 35.0%
ATTGATGTCTTTCTGCAACA+AGG + chr3_1:92205699-92205718 None:intergenic 35.0%
TGTTGCAGAAAGACATCAAT+TGG - chr3_1:92205699-92205718 Msa0388070:intron 35.0%
AATGTGAGTCAACAATGTCA+CGG + chr3_1:92206090-92206109 None:intergenic 35.0%
ATCAACATCAGTGGAATCAA+TGG - chr3_1:92206133-92206152 Msa0388070:intron 35.0%
GAAAGTTAGTTAGTTGGAGA+AGG + chr3_1:92206453-92206472 None:intergenic 35.0%
!!! CTTAATTGGTTTTGGGTCAA+AGG + chr3_1:92206526-92206545 None:intergenic 35.0%
CTTTGACCCAAAACCAATTA+AGG - chr3_1:92206524-92206543 Msa0388070:CDS 35.0%
TAACTTGATTCAAACTAGGG+TGG + chr3_1:92206560-92206579 None:intergenic 35.0%
TAATGCAAAACTAGGGTGAT+TGG - chr3_1:92206665-92206684 Msa0388070:intron 35.0%
TTGAAAGCAATTGAGAAGCT+TGG - chr3_1:92206847-92206866 Msa0388070:intron 35.0%
TGAAAGCAATTGAGAAGCTT+GGG - chr3_1:92206848-92206867 Msa0388070:intron 35.0%
CTGACATTAACACCTTCTTA+TGG - chr3_1:92206944-92206963 Msa0388070:intron 35.0%
! GATTTCAAGTCTACTACGTA+TGG - chr3_1:92207044-92207063 Msa0388070:intron 35.0%
! TTTCAAGTCTACTACGTATG+GGG - chr3_1:92207046-92207065 Msa0388070:intron 35.0%
TATGGATCCATGTTAGATGA+TGG + chr3_1:92207245-92207264 None:intergenic 35.0%
AAAAATGCCAATGACCATGA+GGG - chr3_1:92207551-92207570 Msa0388070:five_prime_UTR 35.0%
!!! ATGGACAACTACTTTTTGGT+TGG - chr3_1:92207623-92207642 Msa0388070:five_prime_UTR 35.0%
!!! GTTGGATTTTTTTTGGTGGT+CGG - chr3_1:92207641-92207660 Msa0388070:five_prime_UTR 35.0%
!!! TTGGATTTTTTTTGGTGGTC+GGG - chr3_1:92207642-92207661 Msa0388070:five_prime_UTR 35.0%
CATAATATATGCAAGGTCTG+GGG + chr3_1:92207675-92207694 None:intergenic 35.0%
GCATAATATATGCAAGGTCT+GGG + chr3_1:92207676-92207695 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+TGG + chr3_1:92207677-92207696 None:intergenic 35.0%
!!! GGAGAGACATGTTTTGGTTT+TGG + chr3_1:92203832-92203851 None:intergenic 40.0%
! CTGAAAGGAGAGACATGTTT+TGG + chr3_1:92203838-92203857 None:intergenic 40.0%
! GATGATTTTCTCGGTGGTTT+CGG + chr3_1:92203882-92203901 None:intergenic 40.0%
! GTATTCGGCGATGATTTTCT+CGG + chr3_1:92203891-92203910 None:intergenic 40.0%
! ATTCTAGAAAAACGTTGCGG+TGG + chr3_1:92204077-92204096 None:intergenic 40.0%
GTTCATTATGTCAGGATTGG+TGG - chr3_1:92204616-92204635 Msa0388070:intron 40.0%
GAACCATCATAGTTCCACTT+GGG + chr3_1:92204829-92204848 None:intergenic 40.0%
! GATCCTTGAAAATGGCTTGT+GGG + chr3_1:92205016-92205035 None:intergenic 40.0%
AAACATCATCGAGTGTGTCT+TGG + chr3_1:92205249-92205268 None:intergenic 40.0%
TTCTGATCCCTAAATGTGTG+AGG + chr3_1:92205309-92205328 None:intergenic 40.0%
ATCAGGATGGCTGAAAATCT+TGG + chr3_1:92205540-92205559 None:intergenic 40.0%
! ATGTTGTTGCTGAAGTACCA+TGG - chr3_1:92205558-92205577 Msa0388070:intron 40.0%
! AAAGACATCAATTGGCCTCT+TGG - chr3_1:92205707-92205726 Msa0388070:intron 40.0%
! TGAAAGTGAGTTTTCACCTG+AGG + chr3_1:92205758-92205777 None:intergenic 40.0%
CAATAGGGACCATACTATTG+TGG - chr3_1:92206040-92206059 Msa0388070:intron 40.0%
TACAAAGCCTGTCTTTATGC+CGG - chr3_1:92206109-92206128 Msa0388070:intron 40.0%
TAAGTCCAACTTACTTGACC+AGG + chr3_1:92206169-92206188 None:intergenic 40.0%
! ATGTAGTGGGAATTCCAAGT+TGG - chr3_1:92206283-92206302 Msa0388070:intron 40.0%
!! ATGGGTTGCTCGTTACATTT+TGG - chr3_1:92206339-92206358 Msa0388070:intron 40.0%
CAAAACTAGGGTGATTGGAA+TGG - chr3_1:92206670-92206689 Msa0388070:intron 40.0%
!! CTTGGTGCTACAGCATTATA+AGG + chr3_1:92206794-92206813 None:intergenic 40.0%
ACCAAGTCTATGAGAGAAGA+TGG - chr3_1:92206808-92206827 Msa0388070:intron 40.0%
ACCATCTTCTCTCATAGACT+TGG + chr3_1:92206812-92206831 None:intergenic 40.0%
AAGTCTATGAGAGAAGATGG+TGG - chr3_1:92206811-92206830 Msa0388070:intron 40.0%
TTCAAGTCTACTACGTATGG+GGG - chr3_1:92207047-92207066 Msa0388070:intron 40.0%
TGTTGTTCTAATTGTTGGCG+TGG - chr3_1:92207122-92207141 Msa0388070:intron 40.0%
!! CGTGGCTTGTGTTATTTGAA+GGG - chr3_1:92207140-92207159 Msa0388070:intron 40.0%
! GGAAAGGTTATTTCGAGGAT+AGG - chr3_1:92207216-92207235 Msa0388070:intron 40.0%
! AAGGTTATTTCGAGGATAGG+AGG - chr3_1:92207219-92207238 Msa0388070:intron 40.0%
TTATGGTTTCCAGAGAATGG+TGG + chr3_1:92207294-92207313 None:intergenic 40.0%
TACTTCAATGCATGTGTGTG+TGG + chr3_1:92207321-92207340 None:intergenic 40.0%
! TGAATTTGAGGCCTCGTTAT+AGG - chr3_1:92207436-92207455 Msa0388070:intron 40.0%
GAAAAATGCCAATGACCATG+AGG - chr3_1:92207550-92207569 Msa0388070:five_prime_UTR 40.0%
!!! TGGATTTTTTTTGGTGGTCG+GGG - chr3_1:92207643-92207662 Msa0388070:five_prime_UTR 40.0%
!!! GGAGAGACATGTTTTGGTTT+TGG + chr3_1:92203832-92203851 None:intergenic 40.0%
! CTGAAAGGAGAGACATGTTT+TGG + chr3_1:92203838-92203857 None:intergenic 40.0%
! GATGATTTTCTCGGTGGTTT+CGG + chr3_1:92203882-92203901 None:intergenic 40.0%
! GTATTCGGCGATGATTTTCT+CGG + chr3_1:92203891-92203910 None:intergenic 40.0%
! ATTCTAGAAAAACGTTGCGG+TGG + chr3_1:92204077-92204096 None:intergenic 40.0%
GTTCATTATGTCAGGATTGG+TGG - chr3_1:92204616-92204635 Msa0388070:intron 40.0%
GAACCATCATAGTTCCACTT+GGG + chr3_1:92204829-92204848 None:intergenic 40.0%
! GATCCTTGAAAATGGCTTGT+GGG + chr3_1:92205016-92205035 None:intergenic 40.0%
AAACATCATCGAGTGTGTCT+TGG + chr3_1:92205249-92205268 None:intergenic 40.0%
TTCTGATCCCTAAATGTGTG+AGG + chr3_1:92205309-92205328 None:intergenic 40.0%
ATCAGGATGGCTGAAAATCT+TGG + chr3_1:92205540-92205559 None:intergenic 40.0%
! ATGTTGTTGCTGAAGTACCA+TGG - chr3_1:92205558-92205577 Msa0388070:intron 40.0%
! AAAGACATCAATTGGCCTCT+TGG - chr3_1:92205707-92205726 Msa0388070:intron 40.0%
! TGAAAGTGAGTTTTCACCTG+AGG + chr3_1:92205758-92205777 None:intergenic 40.0%
CAATAGGGACCATACTATTG+TGG - chr3_1:92206040-92206059 Msa0388070:intron 40.0%
TACAAAGCCTGTCTTTATGC+CGG - chr3_1:92206109-92206128 Msa0388070:intron 40.0%
TAAGTCCAACTTACTTGACC+AGG + chr3_1:92206169-92206188 None:intergenic 40.0%
! ATGTAGTGGGAATTCCAAGT+TGG - chr3_1:92206283-92206302 Msa0388070:intron 40.0%
!! ATGGGTTGCTCGTTACATTT+TGG - chr3_1:92206339-92206358 Msa0388070:intron 40.0%
CAAAACTAGGGTGATTGGAA+TGG - chr3_1:92206670-92206689 Msa0388070:intron 40.0%
!! CTTGGTGCTACAGCATTATA+AGG + chr3_1:92206794-92206813 None:intergenic 40.0%
ACCAAGTCTATGAGAGAAGA+TGG - chr3_1:92206808-92206827 Msa0388070:intron 40.0%
ACCATCTTCTCTCATAGACT+TGG + chr3_1:92206812-92206831 None:intergenic 40.0%
AAGTCTATGAGAGAAGATGG+TGG - chr3_1:92206811-92206830 Msa0388070:intron 40.0%
TTCAAGTCTACTACGTATGG+GGG - chr3_1:92207047-92207066 Msa0388070:intron 40.0%
TGTTGTTCTAATTGTTGGCG+TGG - chr3_1:92207122-92207141 Msa0388070:intron 40.0%
!! CGTGGCTTGTGTTATTTGAA+GGG - chr3_1:92207140-92207159 Msa0388070:intron 40.0%
! GGAAAGGTTATTTCGAGGAT+AGG - chr3_1:92207216-92207235 Msa0388070:intron 40.0%
! AAGGTTATTTCGAGGATAGG+AGG - chr3_1:92207219-92207238 Msa0388070:intron 40.0%
TTATGGTTTCCAGAGAATGG+TGG + chr3_1:92207294-92207313 None:intergenic 40.0%
TACTTCAATGCATGTGTGTG+TGG + chr3_1:92207321-92207340 None:intergenic 40.0%
! TGAATTTGAGGCCTCGTTAT+AGG - chr3_1:92207436-92207455 Msa0388070:intron 40.0%
GAAAAATGCCAATGACCATG+AGG - chr3_1:92207550-92207569 Msa0388070:five_prime_UTR 40.0%
!!! TGGATTTTTTTTGGTGGTCG+GGG - chr3_1:92207643-92207662 Msa0388070:five_prime_UTR 40.0%
TAGAGAAGGTGAGGAAGACT+AGG - chr3_1:92203647-92203666 Msa0388070:three_prime_UTR 45.0%
ACAGAGAAATGAGGCAGTGT+GGG + chr3_1:92203705-92203724 None:intergenic 45.0%
AACAGAGAAATGAGGCAGTG+TGG + chr3_1:92203706-92203725 None:intergenic 45.0%
AGTGGTAGACTGGTAGGTTT+GGG + chr3_1:92204492-92204511 None:intergenic 45.0%
TAGTGGTAGACTGGTAGGTT+TGG + chr3_1:92204493-92204512 None:intergenic 45.0%
GTACTTAGTGGTAGACTGGT+AGG + chr3_1:92204498-92204517 None:intergenic 45.0%
! TATGTCAGGATTGGTGGATC+TGG - chr3_1:92204622-92204641 Msa0388070:intron 45.0%
CTTCCCAAGTGGAACTATGA+TGG - chr3_1:92204823-92204842 Msa0388070:CDS 45.0%
GGAACCATCATAGTTCCACT+TGG + chr3_1:92204830-92204849 None:intergenic 45.0%
AACTATGATGGTTCCAGCAC+AGG - chr3_1:92204835-92204854 Msa0388070:CDS 45.0%
GGATCCTTGAAAATGGCTTG+TGG + chr3_1:92205017-92205036 None:intergenic 45.0%
ATGTGTGAGGCGTGTCAATA+TGG + chr3_1:92205296-92205315 None:intergenic 45.0%
TTGACACGCCTCACACATTT+AGG - chr3_1:92205298-92205317 Msa0388070:CDS 45.0%
TGACACGCCTCACACATTTA+GGG - chr3_1:92205299-92205318 Msa0388070:CDS 45.0%
CTATTGCGAGTTTATGCAGC+TGG - chr3_1:92205404-92205423 Msa0388070:intron 45.0%
!! TGCAGCTGGTCTTGTTTCAT+TGG - chr3_1:92205418-92205437 Msa0388070:intron 45.0%
! TGTCTCTTGTTGGTGGGAAT+GGG + chr3_1:92205509-92205528 None:intergenic 45.0%
! ATGTCTCTTGTTGGTGGGAA+TGG + chr3_1:92205510-92205529 None:intergenic 45.0%
CTTCAGCAACAACATCAGGA+TGG + chr3_1:92205553-92205572 None:intergenic 45.0%
GGTACTTCAGCAACAACATC+AGG + chr3_1:92205557-92205576 None:intergenic 45.0%
! ACATCAATTGGCCTCTTGGT+TGG - chr3_1:92205711-92205730 Msa0388070:intron 45.0%
GAAAATGGTGTGACCATGAG+TGG - chr3_1:92205835-92205854 Msa0388070:CDS 45.0%
GATTCCACTGATGTTGATGC+CGG + chr3_1:92206131-92206150 None:intergenic 45.0%
ATCAATGGTGAAGTGATGCC+TGG - chr3_1:92206148-92206167 Msa0388070:intron 45.0%
TGATGCCTGGTCAAGTAAGT+TGG - chr3_1:92206161-92206180 Msa0388070:intron 45.0%
! TCTCTGCTGGTGATGAGATA+TGG - chr3_1:92206320-92206339 Msa0388070:intron 45.0%
! CTCTGCTGGTGATGAGATAT+GGG - chr3_1:92206321-92206340 Msa0388070:intron 45.0%
! GGTTGCTCGTTACATTTTGG+AGG - chr3_1:92206342-92206361 Msa0388070:intron 45.0%
!! GCTCGTTACATTTTGGAGGT+AGG - chr3_1:92206346-92206365 Msa0388070:intron 45.0%
!! CGTTACATTTTGGAGGTAGG+TGG - chr3_1:92206349-92206368 Msa0388070:intron 45.0%
GTTCCAATAGAGGATCACTG+AGG - chr3_1:92206482-92206501 Msa0388070:intron 45.0%
CAACCTCAGTGATCCTCTAT+TGG + chr3_1:92206488-92206507 None:intergenic 45.0%
CTGGTGCTCACACAAATTAC+AGG - chr3_1:92206695-92206714 Msa0388070:intron 45.0%
! AAGGAGCACATTGCTGCTTA+TGG - chr3_1:92206880-92206899 Msa0388070:intron 45.0%
! CACATTGCTGCTTATGGAGA+AGG - chr3_1:92206886-92206905 Msa0388070:intron 45.0%
TCAAGTCTACTACGTATGGG+GGG - chr3_1:92207048-92207067 Msa0388070:intron 45.0%
!! GCGTGGCTTGTGTTATTTGA+AGG - chr3_1:92207139-92207158 Msa0388070:intron 45.0%
!! TGCGTCGATTAGAGTTGGAA+GGG - chr3_1:92207178-92207197 Msa0388070:intron 45.0%
! AGCAGGGAAAGGTTATTTCG+AGG - chr3_1:92207211-92207230 Msa0388070:intron 45.0%
TAGGAGGCCATCATCTAACA+TGG - chr3_1:92207235-92207254 Msa0388070:intron 45.0%
! AATGGTGGTGTCTGCAATCA+TGG + chr3_1:92207279-92207298 None:intergenic 45.0%
GGCTTATGGTTTCCAGAGAA+TGG + chr3_1:92207297-92207316 None:intergenic 45.0%
TTCAATGCATGTGTGTGTGG+TGG + chr3_1:92207318-92207337 None:intergenic 45.0%
TAGAGAAGGTGAGGAAGACT+AGG - chr3_1:92203647-92203666 Msa0388070:three_prime_UTR 45.0%
ACAGAGAAATGAGGCAGTGT+GGG + chr3_1:92203705-92203724 None:intergenic 45.0%
AACAGAGAAATGAGGCAGTG+TGG + chr3_1:92203706-92203725 None:intergenic 45.0%
AGTGGTAGACTGGTAGGTTT+GGG + chr3_1:92204492-92204511 None:intergenic 45.0%
TAGTGGTAGACTGGTAGGTT+TGG + chr3_1:92204493-92204512 None:intergenic 45.0%
GTACTTAGTGGTAGACTGGT+AGG + chr3_1:92204498-92204517 None:intergenic 45.0%
! TATGTCAGGATTGGTGGATC+TGG - chr3_1:92204622-92204641 Msa0388070:intron 45.0%
CTTCCCAAGTGGAACTATGA+TGG - chr3_1:92204823-92204842 Msa0388070:CDS 45.0%
GGAACCATCATAGTTCCACT+TGG + chr3_1:92204830-92204849 None:intergenic 45.0%
AACTATGATGGTTCCAGCAC+AGG - chr3_1:92204835-92204854 Msa0388070:CDS 45.0%
GGATCCTTGAAAATGGCTTG+TGG + chr3_1:92205017-92205036 None:intergenic 45.0%
ATGTGTGAGGCGTGTCAATA+TGG + chr3_1:92205296-92205315 None:intergenic 45.0%
TTGACACGCCTCACACATTT+AGG - chr3_1:92205298-92205317 Msa0388070:CDS 45.0%
TGACACGCCTCACACATTTA+GGG - chr3_1:92205299-92205318 Msa0388070:CDS 45.0%
CTATTGCGAGTTTATGCAGC+TGG - chr3_1:92205404-92205423 Msa0388070:intron 45.0%
!! TGCAGCTGGTCTTGTTTCAT+TGG - chr3_1:92205418-92205437 Msa0388070:intron 45.0%
! TGTCTCTTGTTGGTGGGAAT+GGG + chr3_1:92205509-92205528 None:intergenic 45.0%
! ATGTCTCTTGTTGGTGGGAA+TGG + chr3_1:92205510-92205529 None:intergenic 45.0%
CTTCAGCAACAACATCAGGA+TGG + chr3_1:92205553-92205572 None:intergenic 45.0%
GGTACTTCAGCAACAACATC+AGG + chr3_1:92205557-92205576 None:intergenic 45.0%
! ACATCAATTGGCCTCTTGGT+TGG - chr3_1:92205711-92205730 Msa0388070:intron 45.0%
GAAAATGGTGTGACCATGAG+TGG - chr3_1:92205835-92205854 Msa0388070:CDS 45.0%
GATTCCACTGATGTTGATGC+CGG + chr3_1:92206131-92206150 None:intergenic 45.0%
ATCAATGGTGAAGTGATGCC+TGG - chr3_1:92206148-92206167 Msa0388070:intron 45.0%
TGATGCCTGGTCAAGTAAGT+TGG - chr3_1:92206161-92206180 Msa0388070:intron 45.0%
! TCTCTGCTGGTGATGAGATA+TGG - chr3_1:92206320-92206339 Msa0388070:intron 45.0%
! CTCTGCTGGTGATGAGATAT+GGG - chr3_1:92206321-92206340 Msa0388070:intron 45.0%
! GGTTGCTCGTTACATTTTGG+AGG - chr3_1:92206342-92206361 Msa0388070:intron 45.0%
!! GCTCGTTACATTTTGGAGGT+AGG - chr3_1:92206346-92206365 Msa0388070:intron 45.0%
!! CGTTACATTTTGGAGGTAGG+TGG - chr3_1:92206349-92206368 Msa0388070:intron 45.0%
GTTCCAATAGAGGATCACTG+AGG - chr3_1:92206482-92206501 Msa0388070:intron 45.0%
CAACCTCAGTGATCCTCTAT+TGG + chr3_1:92206488-92206507 None:intergenic 45.0%
CTGGTGCTCACACAAATTAC+AGG - chr3_1:92206695-92206714 Msa0388070:intron 45.0%
! AAGGAGCACATTGCTGCTTA+TGG - chr3_1:92206880-92206899 Msa0388070:intron 45.0%
! CACATTGCTGCTTATGGAGA+AGG - chr3_1:92206886-92206905 Msa0388070:intron 45.0%
TCAAGTCTACTACGTATGGG+GGG - chr3_1:92207048-92207067 Msa0388070:intron 45.0%
!! GCGTGGCTTGTGTTATTTGA+AGG - chr3_1:92207139-92207158 Msa0388070:intron 45.0%
!! TGCGTCGATTAGAGTTGGAA+GGG - chr3_1:92207178-92207197 Msa0388070:intron 45.0%
! AGCAGGGAAAGGTTATTTCG+AGG - chr3_1:92207211-92207230 Msa0388070:intron 45.0%
TAGGAGGCCATCATCTAACA+TGG - chr3_1:92207235-92207254 Msa0388070:intron 45.0%
! AATGGTGGTGTCTGCAATCA+TGG + chr3_1:92207279-92207298 None:intergenic 45.0%
GGCTTATGGTTTCCAGAGAA+TGG + chr3_1:92207297-92207316 None:intergenic 45.0%
TTCAATGCATGTGTGTGTGG+TGG + chr3_1:92207318-92207337 None:intergenic 45.0%
!! AATAAAAAAAAAAATAATCA+TGG + chr3_1:92204118-92204137 None:intergenic 5.0%
!! AATAAAAAAAAAAATAATCA+TGG + chr3_1:92204118-92204137 None:intergenic 5.0%
CAGAGAAATGAGGCAGTGTG+GGG + chr3_1:92203704-92203723 None:intergenic 50.0%
! TTTTCTCGGTGGTTTCGGAG+AGG + chr3_1:92203877-92203896 None:intergenic 50.0%
! TTCGGCGATGATTTTCTCGG+TGG + chr3_1:92203888-92203907 None:intergenic 50.0%
! CAGGATTGGTGGATCTGGTT+TGG - chr3_1:92204627-92204646 Msa0388070:intron 50.0%
!! GTGGATCTGGTTTGGACTTG+AGG - chr3_1:92204635-92204654 Msa0388070:intron 50.0%
TGGACTTGAGGAGCAAAGCA+AGG - chr3_1:92204647-92204666 Msa0388070:intron 50.0%
GGACTTGAGGAGCAAAGCAA+GGG - chr3_1:92204648-92204667 Msa0388070:intron 50.0%
!! TTTTGGGTGCAGACTCTACC+AGG - chr3_1:92204778-92204797 Msa0388070:intron 50.0%
AGCTGTGAAGGGTCAGTAAC+TGG + chr3_1:92204805-92204824 None:intergenic 50.0%
TCCACTTGGGAAGCTGTGAA+GGG + chr3_1:92204816-92204835 None:intergenic 50.0%
TTCCACTTGGGAAGCTGTGA+AGG + chr3_1:92204817-92204836 None:intergenic 50.0%
!! CAGCCCACAAGCCATTTTCA+AGG - chr3_1:92205010-92205029 Msa0388070:CDS 50.0%
TGTGATGCATACACTCCAGC+TGG - chr3_1:92205479-92205498 Msa0388070:intron 50.0%
GCTGCATGTCTCTTGTTGGT+GGG + chr3_1:92205515-92205534 None:intergenic 50.0%
AGCTGCATGTCTCTTGTTGG+TGG + chr3_1:92205516-92205535 None:intergenic 50.0%
! TGAGTTTTCACCTGAGGTCC+AGG + chr3_1:92205752-92205771 None:intergenic 50.0%
GGACCATACTATTGTGGTGC+TGG - chr3_1:92206046-92206065 Msa0388070:intron 50.0%
GCACCAGCACCACAATAGTA+TGG + chr3_1:92206052-92206071 None:intergenic 50.0%
GTTGATGCCGGCATAAAGAC+AGG + chr3_1:92206119-92206138 None:intergenic 50.0%
TATGCCGGCATCAACATCAG+TGG - chr3_1:92206124-92206143 Msa0388070:intron 50.0%
!! TTCCAAGTTGGTCCCTCAGT+TGG - chr3_1:92206295-92206314 Msa0388070:intron 50.0%
TACCAACTGAGGGACCAACT+TGG + chr3_1:92206300-92206319 None:intergenic 50.0%
CCAGCAGAGATACCAACTGA+GGG + chr3_1:92206310-92206329 None:intergenic 50.0%
ACCAGCAGAGATACCAACTG+AGG + chr3_1:92206311-92206330 None:intergenic 50.0%
TAGAGGATCACTGAGGTTGC+TGG - chr3_1:92206489-92206508 Msa0388070:CDS 50.0%
TAGGGTGATTGGAATGGTGC+TGG - chr3_1:92206676-92206695 Msa0388070:intron 50.0%
! GAAGCTTGGGAAGAAGCACA+AGG - chr3_1:92206861-92206880 Msa0388070:intron 50.0%
GCAACGAGCGTAGATTGACA+GGG - chr3_1:92206908-92206927 Msa0388070:intron 50.0%
CAAGTCTACTACGTATGGGG+GGG - chr3_1:92207049-92207068 Msa0388070:intron 50.0%
!! TTGAAGGGTGTTGCAAACCG+TGG - chr3_1:92207155-92207174 Msa0388070:intron 50.0%
CAACTCTAATCGACGCACCA+CGG + chr3_1:92207175-92207194 None:intergenic 50.0%
!! GTGCGTCGATTAGAGTTGGA+AGG - chr3_1:92207177-92207196 Msa0388070:intron 50.0%
GAAGGGACACAGAGAAAGCA+GGG - chr3_1:92207195-92207214 Msa0388070:intron 50.0%
GACACAGAGAAAGCAGGGAA+AGG - chr3_1:92207200-92207219 Msa0388070:intron 50.0%
TTGCAGACACCACCATTCTC+TGG - chr3_1:92207282-92207301 Msa0388070:intron 50.0%
CATGTGTGTGTGGTGGCTTA+TGG + chr3_1:92207311-92207330 None:intergenic 50.0%
CCTTCTTCCCTCATGGTCAT+TGG + chr3_1:92207561-92207580 None:intergenic 50.0%
CCAATGACCATGAGGGAAGA+AGG - chr3_1:92207558-92207577 Msa0388070:five_prime_UTR 50.0%
ATTCCTGCCTTCTTCCCTCA+TGG + chr3_1:92207568-92207587 None:intergenic 50.0%
TTGTGAGCTGCTCAGTTGGT+AGG + chr3_1:92207705-92207724 None:intergenic 50.0%
TACCAACTGAGCAGCTCACA+AGG - chr3_1:92207704-92207723 Msa0388070:five_prime_UTR 50.0%
CAGAGAAATGAGGCAGTGTG+GGG + chr3_1:92203704-92203723 None:intergenic 50.0%
! TTTTCTCGGTGGTTTCGGAG+AGG + chr3_1:92203877-92203896 None:intergenic 50.0%
! TTCGGCGATGATTTTCTCGG+TGG + chr3_1:92203888-92203907 None:intergenic 50.0%
! CAGGATTGGTGGATCTGGTT+TGG - chr3_1:92204627-92204646 Msa0388070:intron 50.0%
!! GTGGATCTGGTTTGGACTTG+AGG - chr3_1:92204635-92204654 Msa0388070:intron 50.0%
TGGACTTGAGGAGCAAAGCA+AGG - chr3_1:92204647-92204666 Msa0388070:intron 50.0%
GGACTTGAGGAGCAAAGCAA+GGG - chr3_1:92204648-92204667 Msa0388070:intron 50.0%
!! TTTTGGGTGCAGACTCTACC+AGG - chr3_1:92204778-92204797 Msa0388070:intron 50.0%
AGCTGTGAAGGGTCAGTAAC+TGG + chr3_1:92204805-92204824 None:intergenic 50.0%
TCCACTTGGGAAGCTGTGAA+GGG + chr3_1:92204816-92204835 None:intergenic 50.0%
TTCCACTTGGGAAGCTGTGA+AGG + chr3_1:92204817-92204836 None:intergenic 50.0%
!! CAGCCCACAAGCCATTTTCA+AGG - chr3_1:92205010-92205029 Msa0388070:CDS 50.0%
TGTGATGCATACACTCCAGC+TGG - chr3_1:92205479-92205498 Msa0388070:intron 50.0%
GCTGCATGTCTCTTGTTGGT+GGG + chr3_1:92205515-92205534 None:intergenic 50.0%
AGCTGCATGTCTCTTGTTGG+TGG + chr3_1:92205516-92205535 None:intergenic 50.0%
! TGAGTTTTCACCTGAGGTCC+AGG + chr3_1:92205752-92205771 None:intergenic 50.0%
GGACCATACTATTGTGGTGC+TGG - chr3_1:92206046-92206065 Msa0388070:intron 50.0%
GCACCAGCACCACAATAGTA+TGG + chr3_1:92206052-92206071 None:intergenic 50.0%
GTTGATGCCGGCATAAAGAC+AGG + chr3_1:92206119-92206138 None:intergenic 50.0%
TATGCCGGCATCAACATCAG+TGG - chr3_1:92206124-92206143 Msa0388070:intron 50.0%
!! TTCCAAGTTGGTCCCTCAGT+TGG - chr3_1:92206295-92206314 Msa0388070:intron 50.0%
TACCAACTGAGGGACCAACT+TGG + chr3_1:92206300-92206319 None:intergenic 50.0%
CCAGCAGAGATACCAACTGA+GGG + chr3_1:92206310-92206329 None:intergenic 50.0%
ACCAGCAGAGATACCAACTG+AGG + chr3_1:92206311-92206330 None:intergenic 50.0%
TAGAGGATCACTGAGGTTGC+TGG - chr3_1:92206489-92206508 Msa0388070:CDS 50.0%
TAGGGTGATTGGAATGGTGC+TGG - chr3_1:92206676-92206695 Msa0388070:intron 50.0%
! GAAGCTTGGGAAGAAGCACA+AGG - chr3_1:92206861-92206880 Msa0388070:intron 50.0%
GCAACGAGCGTAGATTGACA+GGG - chr3_1:92206908-92206927 Msa0388070:intron 50.0%
CAAGTCTACTACGTATGGGG+GGG - chr3_1:92207049-92207068 Msa0388070:intron 50.0%
!! TTGAAGGGTGTTGCAAACCG+TGG - chr3_1:92207155-92207174 Msa0388070:intron 50.0%
CAACTCTAATCGACGCACCA+CGG + chr3_1:92207175-92207194 None:intergenic 50.0%
!! GTGCGTCGATTAGAGTTGGA+AGG - chr3_1:92207177-92207196 Msa0388070:intron 50.0%
GAAGGGACACAGAGAAAGCA+GGG - chr3_1:92207195-92207214 Msa0388070:intron 50.0%
GACACAGAGAAAGCAGGGAA+AGG - chr3_1:92207200-92207219 Msa0388070:intron 50.0%
TTGCAGACACCACCATTCTC+TGG - chr3_1:92207282-92207301 Msa0388070:intron 50.0%
CATGTGTGTGTGGTGGCTTA+TGG + chr3_1:92207311-92207330 None:intergenic 50.0%
CCTTCTTCCCTCATGGTCAT+TGG + chr3_1:92207561-92207580 None:intergenic 50.0%
CCAATGACCATGAGGGAAGA+AGG - chr3_1:92207558-92207577 Msa0388070:five_prime_UTR 50.0%
ATTCCTGCCTTCTTCCCTCA+TGG + chr3_1:92207568-92207587 None:intergenic 50.0%
TTGTGAGCTGCTCAGTTGGT+AGG + chr3_1:92207705-92207724 None:intergenic 50.0%
TACCAACTGAGCAGCTCACA+AGG - chr3_1:92207704-92207723 Msa0388070:five_prime_UTR 50.0%
GAAGGGTCAGTAACTGGACC+TGG + chr3_1:92204799-92204818 None:intergenic 55.0%
ACCCTTCACAGCTTCCCAAG+TGG - chr3_1:92204812-92204831 Msa0388070:intron 55.0%
GGCAGCTGCATGTCTCTTGT+TGG + chr3_1:92205519-92205538 None:intergenic 55.0%
!!! TGGCCAGTTGGTGGTTTTCC+TGG - chr3_1:92205731-92205750 Msa0388070:intron 55.0%
GGTCCAGGAAAACCACCAAC+TGG + chr3_1:92205737-92205756 None:intergenic 55.0%
! TGGTGGTTTTCCTGGACCTC+AGG - chr3_1:92205739-92205758 Msa0388070:intron 55.0%
!! TTGTGGTGCTGGTGCTGACA+AGG - chr3_1:92206057-92206076 Msa0388070:intron 55.0%
!! GCTGGTGCTGACAAGGCATT+TGG - chr3_1:92206064-92206083 Msa0388070:intron 55.0%
! CCCTCAGTTGGTATCTCTGC+TGG - chr3_1:92206307-92206326 Msa0388070:intron 55.0%
GATCACTGAGGTTGCTGGTG+TGG - chr3_1:92206494-92206513 Msa0388070:CDS 55.0%
GGCAACGAGCGTAGATTGAC+AGG - chr3_1:92206907-92206926 Msa0388070:intron 55.0%
! ACGTATGGGGGGGATTAGTG+CGG - chr3_1:92207059-92207078 Msa0388070:intron 55.0%
!! CGTGGTGCGTCGATTAGAGT+TGG - chr3_1:92207173-92207192 Msa0388070:intron 55.0%
GGAAGGGACACAGAGAAAGC+AGG - chr3_1:92207194-92207213 Msa0388070:intron 55.0%
TGACCATGAGGGAAGAAGGC+AGG - chr3_1:92207562-92207581 Msa0388070:five_prime_UTR 55.0%
GTCCTTGTGAGCTGCTCAGT+TGG + chr3_1:92207709-92207728 None:intergenic 55.0%
GAAGGGTCAGTAACTGGACC+TGG + chr3_1:92204799-92204818 None:intergenic 55.0%
ACCCTTCACAGCTTCCCAAG+TGG - chr3_1:92204812-92204831 Msa0388070:intron 55.0%
GGCAGCTGCATGTCTCTTGT+TGG + chr3_1:92205519-92205538 None:intergenic 55.0%
!!! TGGCCAGTTGGTGGTTTTCC+TGG - chr3_1:92205731-92205750 Msa0388070:intron 55.0%
GGTCCAGGAAAACCACCAAC+TGG + chr3_1:92205737-92205756 None:intergenic 55.0%
! TGGTGGTTTTCCTGGACCTC+AGG - chr3_1:92205739-92205758 Msa0388070:intron 55.0%
!! TTGTGGTGCTGGTGCTGACA+AGG - chr3_1:92206057-92206076 Msa0388070:intron 55.0%
!! GCTGGTGCTGACAAGGCATT+TGG - chr3_1:92206064-92206083 Msa0388070:intron 55.0%
! CCCTCAGTTGGTATCTCTGC+TGG - chr3_1:92206307-92206326 Msa0388070:intron 55.0%
GATCACTGAGGTTGCTGGTG+TGG - chr3_1:92206494-92206513 Msa0388070:CDS 55.0%
GGCAACGAGCGTAGATTGAC+AGG - chr3_1:92206907-92206926 Msa0388070:intron 55.0%
! ACGTATGGGGGGGATTAGTG+CGG - chr3_1:92207059-92207078 Msa0388070:intron 55.0%
!! CGTGGTGCGTCGATTAGAGT+TGG - chr3_1:92207173-92207192 Msa0388070:intron 55.0%
GGAAGGGACACAGAGAAAGC+AGG - chr3_1:92207194-92207213 Msa0388070:intron 55.0%
TGACCATGAGGGAAGAAGGC+AGG - chr3_1:92207562-92207581 Msa0388070:five_prime_UTR 55.0%
GTCCTTGTGAGCTGCTCAGT+TGG + chr3_1:92207709-92207728 None:intergenic 55.0%
CGGTGGTTTCGGAGAGGTCA+AGG + chr3_1:92203871-92203890 None:intergenic 60.0%
TCCAGCACAGGTCAAGCTCC+TGG - chr3_1:92204847-92204866 Msa0388070:CDS 60.0%
TCCAGGAGCTTGACCTGTGC+TGG + chr3_1:92204851-92204870 None:intergenic 60.0%
! GTGGGAATGGGTTCTCCAGC+TGG + chr3_1:92205497-92205516 None:intergenic 60.0%
! TGGCCTCTTGGTTGGCCAGT+TGG - chr3_1:92205719-92205738 Msa0388070:intron 60.0%
CCACCAACTGGCCAACCAAG+AGG + chr3_1:92205725-92205744 None:intergenic 60.0%
! CCTCTTGGTTGGCCAGTTGG+TGG - chr3_1:92205722-92205741 Msa0388070:intron 60.0%
! ATGGGGGGGATTAGTGCGGT+TGG - chr3_1:92207063-92207082 Msa0388070:intron 60.0%
! TGGGGGGGATTAGTGCGGTT+GGG - chr3_1:92207064-92207083 Msa0388070:intron 60.0%
CGGTGGTTTCGGAGAGGTCA+AGG + chr3_1:92203871-92203890 None:intergenic 60.0%
TCCAGCACAGGTCAAGCTCC+TGG - chr3_1:92204847-92204866 Msa0388070:CDS 60.0%
TCCAGGAGCTTGACCTGTGC+TGG + chr3_1:92204851-92204870 None:intergenic 60.0%
! GTGGGAATGGGTTCTCCAGC+TGG + chr3_1:92205497-92205516 None:intergenic 60.0%
! TGGCCTCTTGGTTGGCCAGT+TGG - chr3_1:92205719-92205738 Msa0388070:intron 60.0%
CCACCAACTGGCCAACCAAG+AGG + chr3_1:92205725-92205744 None:intergenic 60.0%
! CCTCTTGGTTGGCCAGTTGG+TGG - chr3_1:92205722-92205741 Msa0388070:intron 60.0%
! ATGGGGGGGATTAGTGCGGT+TGG - chr3_1:92207063-92207082 Msa0388070:intron 60.0%
! TGGGGGGGATTAGTGCGGTT+GGG - chr3_1:92207064-92207083 Msa0388070:intron 60.0%
! GGGGGGGATTAGTGCGGTTG+GGG - chr3_1:92207065-92207084 Msa0388070:intron 65.0%
! GGGGGGGATTAGTGCGGTTG+GGG - chr3_1:92207065-92207084 Msa0388070:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 92203637 92207728 92203637 ID=Msa0388070;Name=Msa0388070
chr3_1 mRNA 92203637 92207728 92203637 ID=Msa0388070-mRNA-1;Parent=Msa0388070;Name=Msa0388070-mRNA-1;_AED=0.13;_eAED=0.13;_QI=205|0.9|0.90|1|1|1|11|415|336
chr3_1 exon 92203637 92204204 92203637 ID=Msa0388070-mRNA-1:exon:25927;Parent=Msa0388070-mRNA-1
chr3_1 exon 92204399 92204558 92204399 ID=Msa0388070-mRNA-1:exon:25926;Parent=Msa0388070-mRNA-1
chr3_1 exon 92204649 92204686 92204649 ID=Msa0388070-mRNA-1:exon:25925;Parent=Msa0388070-mRNA-1
chr3_1 exon 92204820 92204873 92204820 ID=Msa0388070-mRNA-1:exon:25924;Parent=Msa0388070-mRNA-1
chr3_1 exon 92205002 92205076 92205002 ID=Msa0388070-mRNA-1:exon:25923;Parent=Msa0388070-mRNA-1
chr3_1 exon 92205191 92205319 92205191 ID=Msa0388070-mRNA-1:exon:25922;Parent=Msa0388070-mRNA-1
chr3_1 exon 92205605 92205692 92205605 ID=Msa0388070-mRNA-1:exon:25921;Parent=Msa0388070-mRNA-1
chr3_1 exon 92205786 92205892 92205786 ID=Msa0388070-mRNA-1:exon:25920;Parent=Msa0388070-mRNA-1
chr3_1 exon 92206483 92206575 92206483 ID=Msa0388070-mRNA-1:exon:25919;Parent=Msa0388070-mRNA-1
chr3_1 exon 92206696 92206735 92206696 ID=Msa0388070-mRNA-1:exon:25918;Parent=Msa0388070-mRNA-1
chr3_1 exon 92207450 92207728 92207450 ID=Msa0388070-mRNA-1:exon:25917;Parent=Msa0388070-mRNA-1
chr3_1 five_prime_UTR 92207524 92207728 92207524 ID=Msa0388070-mRNA-1:five_prime_utr;Parent=Msa0388070-mRNA-1
chr3_1 CDS 92207450 92207523 92207450 ID=Msa0388070-mRNA-1:cds;Parent=Msa0388070-mRNA-1
chr3_1 CDS 92206696 92206735 92206696 ID=Msa0388070-mRNA-1:cds;Parent=Msa0388070-mRNA-1
chr3_1 CDS 92206483 92206575 92206483 ID=Msa0388070-mRNA-1:cds;Parent=Msa0388070-mRNA-1
chr3_1 CDS 92205786 92205892 92205786 ID=Msa0388070-mRNA-1:cds;Parent=Msa0388070-mRNA-1
chr3_1 CDS 92205605 92205692 92205605 ID=Msa0388070-mRNA-1:cds;Parent=Msa0388070-mRNA-1
chr3_1 CDS 92205191 92205319 92205191 ID=Msa0388070-mRNA-1:cds;Parent=Msa0388070-mRNA-1
chr3_1 CDS 92205002 92205076 92205002 ID=Msa0388070-mRNA-1:cds;Parent=Msa0388070-mRNA-1
chr3_1 CDS 92204820 92204873 92204820 ID=Msa0388070-mRNA-1:cds;Parent=Msa0388070-mRNA-1
chr3_1 CDS 92204649 92204686 92204649 ID=Msa0388070-mRNA-1:cds;Parent=Msa0388070-mRNA-1
chr3_1 CDS 92204399 92204558 92204399 ID=Msa0388070-mRNA-1:cds;Parent=Msa0388070-mRNA-1
chr3_1 CDS 92204052 92204204 92204052 ID=Msa0388070-mRNA-1:cds;Parent=Msa0388070-mRNA-1
chr3_1 three_prime_UTR 92203637 92204051 92203637 ID=Msa0388070-mRNA-1:three_prime_utr;Parent=Msa0388070-mRNA-1
Gene Sequence

>Msa0388070

ATGTCTCTCCTTTCAGATCTTATCAACCTTGACCTCTCCGAAACCACCGAGAAAATCATCGCCGAATACATATGGATTGGTGGATCTGGTTTGGACTTGAGGAGCAAAGCAAGGACTCTACCAGGTCCAGTTACTGACCCTTCACAGCTTCCCAAGTGGAACTATGATGGTTCCAGCACAGGTCAAGCTCCTGGAGAAGATAGTGAAGTTATGTGTGATGCATACACTCCAGCTGGAGAACCCATTCCCACCAACAAGAGACATGCAGCTGCCAAGATTTTCAGCCATCCTGATGTTGTTGCTGAAGTACCATGGTATGGTATTGAGCAAGAATACACCTTGTTGCAGAAAGACATCAATTGGCCTCTTGGTTGGCCAGTTGGTGGTTTTCCTGGACCTCAGGGACCATACTATTGTGGTGCTGGTGCTGACAAGGCATTTGGCCGTGACATTGTTGACTCACATTACAAAGCCTGTCTTTATGCCGGCATCAACATCAGTGGAATCAATGGTGAAGTGATGCCTGGTCAATGGGAATTCCAAGTTGGTCCCTCAGTTGGTATCTCTGCTGGTGATGAGATATGGGTTGCTCGTTACATTTTGGAGAGGATCACTGAGGTTGCTGGTGTGGTGCTTTCCTTTGACCCAAAACCAATTAAGGGTGATTGGAATGGTGCTGGTGCTCACACAAATTACAGCACCAAGTCTATGAGAGAAGATGGTGGCTATGAAGTCATCTTGAAAGCAATTGAGAAGCTTGGGAAGAAGCACAAGGAGCACATTGCTGCTTATGGAGAAGGCAACGAGCGTAGATTGACAGGGCGACATGAGACAGCTGACATTAACACCTTCTTATGGGGTGTTGCAAACCGTGGTGCGTCGATTAGAGTTGGAAGGGACACAGAGAAAGCAGGGAAAGGTTATTTCGAGGATAGGAGGCCATCATCTAACATGGATCCATATGTTGTTACTTCCATGATTGCAGACACCACCATTCTCTGGAAACCATAA
Protein sequence

>Msa0388070

MSLLSDLINLDLSETTEKIIAEYIWIGGSGLDLRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVMCDAYTPAGEPIPTNKRHAAAKIFSHPDVVAEVPWYGIEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEVAGVVLSFDPKPIKGDWNGAGAHTNYSTKSMREDGGYEVILKAIEKLGKKHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPSSNMDPYVVTSMIADTTILWKP*