AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0388010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0388010 MtrunA17_Chr3g0110261 99.157 356 3 0 1 356 1 356 0.0 728
Msa0388010 MtrunA17_Chr6g0479141 89.326 356 38 0 1 356 1 356 0.0 676
Msa0388010 MtrunA17_Chr5g0434471 87.042 355 46 0 2 356 3 357 0.0 657
Msa0388010 MtrunA17_Chr2g0287211 79.213 356 74 0 1 356 57 412 0.0 612
Msa0388010 MtrunA17_Chr2g0287181 75.562 356 87 0 1 356 57 412 0.0 590
Msa0388010 MtrunA17_Chr8g0364341 69.091 55 17 0 252 306 9 63 8.68e-20 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0388010 AT5G37600.1 89.326 356 38 0 1 356 1 356 0.0 679
Msa0388010 AT1G66200.1 88.764 356 40 0 1 356 1 356 0.0 677
Msa0388010 AT5G16570.1 90.169 356 35 0 1 356 1 356 0.0 676
Msa0388010 AT1G66200.3 86.575 365 40 1 1 356 1 365 0.0 669
Msa0388010 AT3G17820.1 85.552 353 51 0 1 353 1 353 0.0 644
Msa0388010 AT1G48470.1 81.065 338 64 0 16 353 16 353 0.0 598
Msa0388010 AT5G35630.3 76.966 356 82 0 1 356 59 414 0.0 596
Msa0388010 AT5G35630.2 76.966 356 82 0 1 356 59 414 0.0 596
Msa0388010 AT5G35630.1 76.966 356 82 0 1 356 59 414 0.0 596
Msa0388010 AT1G66200.2 88.889 252 28 0 1 252 1 252 5.44e-174 484
Msa0388010 AT5G16570.2 89.540 239 25 0 1 239 1 239 8.90e-162 452

Find 143 sgRNAs with CRISPR-Local

Find 568 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCAAACCTTAATTGGTTT+TGG 0.177125 3_1:-92119553 None:intergenic
CTTTGACCCAAAACCAATTA+AGG 0.180257 3_1:+92119546 Msa0388010:CDS
TGGAAATAGCAAACCTTAAT+TGG 0.193278 3_1:-92119559 None:intergenic
ATGGGTTGCTCGTTACATTT+TGG 0.219815 3_1:+92119361 Msa0388010:CDS
CTGACATTAACACCTTCTTA+TGG 0.238098 3_1:+92119965 Msa0388010:CDS
TCTAAATGGATCCTTGAAAA+TGG 0.250502 3_1:-92118044 None:intergenic
GTTGATTACGCATTAGAATT+TGG 0.259893 3_1:+92120373 Msa0388010:three_prime_UTR
ACTACTATAAATTTAACTTA+TGG 0.272583 3_1:+92120623 Msa0388010:three_prime_UTR
ATATTGTTACCCCTTCTAAA+TGG 0.285580 3_1:-92118058 None:intergenic
TTGGATTTGTGTTATTGTTA+TGG 0.290371 3_1:+92120415 Msa0388010:three_prime_UTR
CCTTCTTCCCTCATGGTCAT+TGG 0.292176 3_1:-92120577 None:intergenic
CTGAAAGGAGAGACATGTTT+TGG 0.292470 3_1:-92116857 None:intergenic
ACTTTGTTTGTTTGAATTTG+AGG 0.300071 3_1:+92120443 Msa0388010:three_prime_UTR
TCAAATCGAATCGAATCTTT+AGG 0.306816 3_1:+92116790 Msa0388010:five_prime_UTR
ATGTCTCTTGTTGGTGGGAA+TGG 0.309316 3_1:-92118529 None:intergenic
TTCAAACTTAGTAAAATCTA+AGG 0.315824 3_1:-92116827 None:intergenic
TCTCTGCTGGTGATGAGATA+TGG 0.322815 3_1:+92119342 Msa0388010:CDS
AAGGAGCACATTGCTGCTTA+TGG 0.324475 3_1:+92119901 Msa0388010:CDS
TAATGCAAAACTAGGGTGAT+TGG 0.338203 3_1:+92119686 Msa0388010:intron
TGAATTTGAGGCCTCGTTAT+AGG 0.356622 3_1:+92120455 Msa0388010:three_prime_UTR
TGACATTAACACCTTCTTAT+GGG 0.364511 3_1:+92119966 Msa0388010:CDS
TGCATAATATATGCAAGGTC+TGG 0.368560 3_1:-92120693 None:intergenic
TTATTATTCTGACATTTACT+TGG 0.372035 3_1:-92120500 None:intergenic
AGCTGTGAAGGGTCAGTAAC+TGG 0.376973 3_1:-92117825 None:intergenic
GGTCTTATTTATAGCCTAGT+TGG 0.377270 3_1:-92116702 None:intergenic
GGCAGCTGCATGTCTCTTGT+TGG 0.378014 3_1:-92118538 None:intergenic
CATGTGTGTGTGGTGGCTTA+TGG 0.383641 3_1:-92120327 None:intergenic
TATGTCAGGATTGGTGGATC+TGG 0.389845 3_1:+92117644 Msa0388010:intron
GTGGGAATGGGTTCTCCAGC+TGG 0.392840 3_1:-92118516 None:intergenic
AGAATCTAACCATATGTATT+CGG 0.402832 3_1:-92116925 None:intergenic
CAGGATTGGTGGATCTGGTT+TGG 0.409454 3_1:+92117649 Msa0388010:intron
TGAAAGCAATTGAGAAGCTT+GGG 0.410163 3_1:+92119869 Msa0388010:CDS
ATCATGGAAGTAACAACATA+TGG 0.411129 3_1:-92120279 None:intergenic
TCCAGGAGCTTGACCTGTGC+TGG 0.411245 3_1:-92117871 None:intergenic
TAGAAGGGGTAACAATATCT+TGG 0.417590 3_1:+92118063 Msa0388010:CDS
CTGGTGCTCACACAAATTAC+AGG 0.417888 3_1:+92119716 Msa0388010:CDS
AAAGACATCAATTGGCCTCT+TGG 0.419531 3_1:+92118729 Msa0388010:CDS
CCCTCAGTTGGTATCTCTGC+TGG 0.420001 3_1:+92119329 Msa0388010:CDS
TTGAAAGCAATTGAGAAGCT+TGG 0.420009 3_1:+92119868 Msa0388010:CDS
GGCAACGAGCGTAGATTGAC+AGG 0.421220 3_1:+92119928 Msa0388010:CDS
TGTTGCAGAAAGACATCAAT+TGG 0.424542 3_1:+92118721 Msa0388010:CDS
TGTCTCTTGTTGGTGGGAAT+GGG 0.425962 3_1:-92118528 None:intergenic
ATTCCTGCCTTCTTCCCTCA+TGG 0.426313 3_1:-92120584 None:intergenic
CTCTGCTGGTGATGAGATAT+GGG 0.426324 3_1:+92119343 Msa0388010:CDS
TAGAGGATCACTGAGGTTGC+TGG 0.429246 3_1:+92119511 Msa0388010:intron
GCTGGTGCTGACAAGGCATT+TGG 0.430707 3_1:+92119086 Msa0388010:CDS
GCATAATATATGCAAGGTCT+GGG 0.444486 3_1:-92120692 None:intergenic
ATCAGGATGGCTGAAAATCT+TGG 0.445473 3_1:-92118559 None:intergenic
CGGTGGTTTCGGAGAGGTCA+AGG 0.456062 3_1:-92116890 None:intergenic
GTTCATTATGTCAGGATTGG+TGG 0.459850 3_1:+92117638 Msa0388010:intron
GTGGATCTGGTTTGGACTTG+AGG 0.460278 3_1:+92117657 Msa0388010:CDS
GGCTTATGGTTTCCAGAGAA+TGG 0.461165 3_1:-92120313 None:intergenic
CCTCTTGGTTGGCCAGTTGG+TGG 0.462411 3_1:+92118744 Msa0388010:CDS
AAATCATCGCCGAATACATA+TGG 0.465828 3_1:+92116916 Msa0388010:CDS
AGCTGCATGTCTCTTGTTGG+TGG 0.467488 3_1:-92118535 None:intergenic
AATGGTGGTGTCTGCAATCA+TGG 0.470051 3_1:-92120295 None:intergenic
TCCAGCACAGGTCAAGCTCC+TGG 0.473336 3_1:+92117870 Msa0388010:CDS
TTGCAGACACCACCATTCTC+TGG 0.481231 3_1:+92120301 Msa0388010:CDS
TGGCCTCTTGGTTGGCCAGT+TGG 0.482222 3_1:+92118741 Msa0388010:CDS
AACTATGATGGTTCCAGCAC+AGG 0.485647 3_1:+92117858 Msa0388010:CDS
GGTACTTCAGCAACAACATC+AGG 0.488296 3_1:-92118576 None:intergenic
TTATTTGCTTACCCATAAGA+AGG 0.490705 3_1:-92119977 None:intergenic
TTCCACTTGGGAAGCTGTGA+AGG 0.498232 3_1:-92117837 None:intergenic
GATCCTTGAAAATGGCTTGT+GGG 0.500897 3_1:-92118036 None:intergenic
ACATCAATTGGCCTCTTGGT+TGG 0.505676 3_1:+92118733 Msa0388010:CDS
CCAATGACCATGAGGGAAGA+AGG 0.505889 3_1:+92120577 Msa0388010:three_prime_UTR
GAATCAAATGAAAACGAAAA+CGG 0.513020 3_1:-92116761 None:intergenic
GCACCAGCACCACAATAGTA+TGG 0.514601 3_1:-92119071 None:intergenic
GGAAGGGACACAGAGAAAGC+AGG 0.514679 3_1:+92120213 Msa0388010:CDS
TTGTGAGCTGCTCAGTTGGT+AGG 0.515130 3_1:-92120721 None:intergenic
ATCAACATCAGTGGAATCAA+TGG 0.515689 3_1:+92119155 Msa0388010:CDS
CTTCCCAAGTGGAACTATGA+TGG 0.516245 3_1:+92117846 Msa0388010:CDS
GGAAAGGTTATTTCGAGGAT+AGG 0.519246 3_1:+92120235 Msa0388010:CDS
CACATTGCTGCTTATGGAGA+AGG 0.521068 3_1:+92119907 Msa0388010:CDS
TACAAAGCCTGTCTTTATGC+CGG 0.521155 3_1:+92119131 Msa0388010:CDS
ACCAAGTCTATGAGAGAAGA+TGG 0.523810 3_1:+92119829 Msa0388010:CDS
TAGAGAAGGTGAGGAAGACT+AGG 0.524386 3_1:+92116669 Msa0388010:five_prime_UTR
TTTCAAGGATCCATTTAGAA+GGG 0.527758 3_1:+92118048 Msa0388010:CDS
GTTGATGCCGGCATAAAGAC+AGG 0.529739 3_1:-92119138 None:intergenic
GGACCATACTATTGTGGTGC+TGG 0.534606 3_1:+92119068 Msa0388010:CDS
ACAGAGAAATGAGGCAGTGT+GGG 0.535734 3_1:-92116724 None:intergenic
AAAAGATTATAGAGAAGGTG+AGG 0.538212 3_1:+92116660 Msa0388010:five_prime_UTR
TATGGATCCATGTTAGATGA+TGG 0.538723 3_1:-92120261 None:intergenic
GCTGCATGTCTCTTGTTGGT+GGG 0.539293 3_1:-92118534 None:intergenic
GGTCCAGGAAAACCACCAAC+TGG 0.540153 3_1:-92118756 None:intergenic
TTCCAAGTTGGTCCCTCAGT+TGG 0.551503 3_1:+92119317 Msa0388010:CDS
CGTGGTGCGTCGATTAGAGT+TGG 0.552602 3_1:+92120192 Msa0388010:CDS
ATAACTTCACTATCTTCTCC+AGG 0.553474 3_1:-92117888 None:intergenic
GATCACTGAGGTTGCTGGTG+TGG 0.554625 3_1:+92119516 Msa0388010:CDS
GATTCCACTGATGTTGATGC+CGG 0.555187 3_1:-92119150 None:intergenic
AGCAGGGAAAGGTTATTTCG+AGG 0.555891 3_1:+92120230 Msa0388010:CDS
AAGGTTATTTCGAGGATAGG+AGG 0.561130 3_1:+92120238 Msa0388010:CDS
GGATCCTTGAAAATGGCTTG+TGG 0.562735 3_1:-92118037 None:intergenic
GTCCTTGTGAGCTGCTCAGT+TGG 0.565947 3_1:-92120725 None:intergenic
TGACCATGAGGGAAGAAGGC+AGG 0.566416 3_1:+92120581 Msa0388010:three_prime_UTR
TGGACTTGAGGAGCAAAGCA+AGG 0.567464 3_1:+92117669 Msa0388010:CDS
ACCATCTTCTCTCATAGACT+TGG 0.571470 3_1:-92119830 None:intergenic
GGAACCATCATAGTTCCACT+TGG 0.572427 3_1:-92117850 None:intergenic
ATTGATGTCTTTCTGCAACA+AGG 0.574318 3_1:-92118718 None:intergenic
TTGTGGTGCTGGTGCTGACA+AGG 0.575827 3_1:+92119079 Msa0388010:CDS
TGTGATGCATACACTCCAGC+TGG 0.581505 3_1:+92118501 Msa0388010:CDS
TACCAACTGAGCAGCTCACA+AGG 0.581680 3_1:+92120723 Msa0388010:three_prime_UTR
TACCAACTGAGGGACCAACT+TGG 0.582203 3_1:-92119319 None:intergenic
GTGCGTCGATTAGAGTTGGA+AGG 0.584013 3_1:+92120196 Msa0388010:CDS
ATGTAGTGGGAATTCCAAGT+TGG 0.586154 3_1:+92119305 Msa0388010:intron
TAGGGTGATTGGAATGGTGC+TGG 0.586935 3_1:+92119697 Msa0388010:intron
TTCAAGGATCCATTTAGAAG+GGG 0.590326 3_1:+92118049 Msa0388010:CDS
ATCAATGGTGAAGTGATGCC+TGG 0.592881 3_1:+92119170 Msa0388010:CDS
TACAATGCATAATATATGCA+AGG 0.595528 3_1:-92120698 None:intergenic
TCCACTTGGGAAGCTGTGAA+GGG 0.596916 3_1:-92117836 None:intergenic
GACACAGAGAAAGCAGGGAA+AGG 0.598045 3_1:+92120219 Msa0388010:CDS
GAAGGGTCAGTAACTGGACC+TGG 0.599215 3_1:-92117819 None:intergenic
CAATAGGGACCATACTATTG+TGG 0.601480 3_1:+92119062 Msa0388010:intron
ACCCTTCACAGCTTCCCAAG+TGG 0.605168 3_1:+92117835 Msa0388010:CDS
TAAGTCCAACTTACTTGACC+AGG 0.608274 3_1:-92119188 None:intergenic
GGACTTGAGGAGCAAAGCAA+GGG 0.609551 3_1:+92117670 Msa0388010:CDS
CAACTCTAATCGACGCACCA+CGG 0.611739 3_1:-92120191 None:intergenic
CAAGGTTGATAAGATCTGAA+AGG 0.614499 3_1:-92116872 None:intergenic
TTCAATGCATGTGTGTGTGG+TGG 0.619576 3_1:-92120334 None:intergenic
TACTTCAATGCATGTGTGTG+TGG 0.619637 3_1:-92120337 None:intergenic
TAGGAGGCCATCATCTAACA+TGG 0.627480 3_1:+92120254 Msa0388010:CDS
CAAAACTAGGGTGATTGGAA+TGG 0.637511 3_1:+92119691 Msa0388010:intron
GAAGGGACACAGAGAAAGCA+GGG 0.638354 3_1:+92120214 Msa0388010:CDS
TGCGTCGATTAGAGTTGGAA+GGG 0.644595 3_1:+92120197 Msa0388010:CDS
GAACCATCATAGTTCCACTT+GGG 0.652093 3_1:-92117849 None:intergenic
AACAGAGAAATGAGGCAGTG+TGG 0.654868 3_1:-92116725 None:intergenic
TTGAAGGGTGTTGCAAACCG+TGG 0.663350 3_1:+92120174 Msa0388010:intron
TTATGGTTTCCAGAGAATGG+TGG 0.667248 3_1:-92120310 None:intergenic
ACCAGCAGAGATACCAACTG+AGG 0.670459 3_1:-92119330 None:intergenic
CCACCAACTGGCCAACCAAG+AGG 0.671238 3_1:-92118744 None:intergenic
CAGAGAAATGAGGCAGTGTG+GGG 0.672345 3_1:-92116723 None:intergenic
TATGCCGGCATCAACATCAG+TGG 0.676060 3_1:+92119146 Msa0388010:CDS
CTTCAGCAACAACATCAGGA+TGG 0.677550 3_1:-92118572 None:intergenic
CATAATATATGCAAGGTCTG+GGG 0.677890 3_1:-92120691 None:intergenic
CCAGCAGAGATACCAACTGA+GGG 0.678315 3_1:-92119329 None:intergenic
AATGTGAGTCAACAATGTCA+CGG 0.681181 3_1:-92119109 None:intergenic
TTGTTGTGAACAGAGAAATG+AGG 0.688616 3_1:-92116733 None:intergenic
GCAACGAGCGTAGATTGACA+GGG 0.702514 3_1:+92119929 Msa0388010:CDS
ATGTTGTTGCTGAAGTACCA+TGG 0.706598 3_1:+92118580 Msa0388010:CDS
GAAGCTTGGGAAGAAGCACA+AGG 0.711059 3_1:+92119882 Msa0388010:CDS
GAAATATGAAACCTATAACG+AGG 0.728719 3_1:-92120466 None:intergenic
AAGTCTATGAGAGAAGATGG+TGG 0.739470 3_1:+92119832 Msa0388010:CDS
GTTCCAATAGAGGATCACTG+AGG 0.789699 3_1:+92119504 Msa0388010:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTATTGAAGATATAAA+TGG + chr3_1:92117774-92117793 Msa0388010:intron 10.0%
!! ACAAAATATATACATAATTA+AGG - chr3_1:92117960-92117979 None:intergenic 10.0%
!!! TATTATGATTTTTACTTATT+TGG + chr3_1:92117996-92118015 Msa0388010:intron 10.0%
!!! ATTATGATTTTTACTTATTT+GGG + chr3_1:92117997-92118016 Msa0388010:intron 10.0%
!!! TAAACAAATTTAAAACAATT+AGG - chr3_1:92118909-92118928 None:intergenic 10.0%
!! AAAAAAATAACATAAAACTA+TGG - chr3_1:92118934-92118953 None:intergenic 10.0%
!!! AATCAACAATAATTATTTTA+CGG - chr3_1:92120538-92120557 None:intergenic 10.0%
!! TAATTTATTGAAGATATAAA+TGG + chr3_1:92117774-92117793 Msa0388010:intron 10.0%
!! ACAAAATATATACATAATTA+AGG - chr3_1:92117960-92117979 None:intergenic 10.0%
!!! TATTATGATTTTTACTTATT+TGG + chr3_1:92117996-92118015 Msa0388010:intron 10.0%
!!! ATTATGATTTTTACTTATTT+GGG + chr3_1:92117997-92118016 Msa0388010:intron 10.0%
!!! TAAACAAATTTAAAACAATT+AGG - chr3_1:92118909-92118928 None:intergenic 10.0%
!! AAAAAAATAACATAAAACTA+TGG - chr3_1:92118934-92118953 None:intergenic 10.0%
!!! AATCAACAATAATTATTTTA+CGG - chr3_1:92120538-92120557 None:intergenic 10.0%
!!! ATAGATTTTTAAGTTGATTT+TGG + chr3_1:92117273-92117292 Msa0388010:intron 15.0%
!!! TAGATTTTTAAGTTGATTTT+GGG + chr3_1:92117274-92117293 Msa0388010:intron 15.0%
!!! TTTTTTGTTTGGAATAAAAT+TGG + chr3_1:92117418-92117437 Msa0388010:intron 15.0%
!! TGAACATAAATTAATCAAAA+GGG - chr3_1:92117623-92117642 None:intergenic 15.0%
!! ATGAACATAAATTAATCAAA+AGG - chr3_1:92117624-92117643 None:intergenic 15.0%
!!! TTATGATTTTTACTTATTTG+GGG + chr3_1:92117998-92118017 Msa0388010:intron 15.0%
!!! TAGTAATTTTGATACATTTA+AGG - chr3_1:92118164-92118183 None:intergenic 15.0%
!! ATTTAATTAAACACAAAAGA+GGG - chr3_1:92118471-92118490 None:intergenic 15.0%
!! AATTTAATTAAACACAAAAG+AGG - chr3_1:92118472-92118491 None:intergenic 15.0%
!!! TTTTGTGTTTAATTAAATTC+AGG + chr3_1:92118473-92118492 Msa0388010:intron 15.0%
!!! AATTTAAAACAATTAGGTAT+GGG - chr3_1:92118903-92118922 None:intergenic 15.0%
!!! AAATTTAAAACAATTAGGTA+TGG - chr3_1:92118904-92118923 None:intergenic 15.0%
!!! TATTTTATAATTTGCTCAAT+AGG + chr3_1:92119046-92119065 Msa0388010:intron 15.0%
!!! ATTTTATAATTTGCTCAATA+GGG + chr3_1:92119047-92119066 Msa0388010:intron 15.0%
!! TAGTAAATAATAATGCTAAA+GGG - chr3_1:92119219-92119238 None:intergenic 15.0%
!!! TATTGTTTTTTTAATGTAGT+GGG + chr3_1:92119292-92119311 Msa0388010:intron 15.0%
!!! TTATTTTTTAATGCAAAACT+AGG + chr3_1:92119678-92119697 Msa0388010:intron 15.0%
!!! TATTTTTTAATGCAAAACTA+GGG + chr3_1:92119679-92119698 Msa0388010:intron 15.0%
!!! CTATAGTTGAATATTTTATA+TGG + chr3_1:92119770-92119789 Msa0388010:intron 15.0%
!!! TTTTCTTTTTTTTCTTTTCT+TGG - chr3_1:92120019-92120038 None:intergenic 15.0%
!!! ACTACTATAAATTTAACTTA+TGG + chr3_1:92120623-92120642 Msa0388010:three_prime_UTR 15.0%
!!! ATAGATTTTTAAGTTGATTT+TGG + chr3_1:92117273-92117292 Msa0388010:intron 15.0%
!!! TAGATTTTTAAGTTGATTTT+GGG + chr3_1:92117274-92117293 Msa0388010:intron 15.0%
!!! TTTTTTGTTTGGAATAAAAT+TGG + chr3_1:92117418-92117437 Msa0388010:intron 15.0%
!! TGAACATAAATTAATCAAAA+GGG - chr3_1:92117623-92117642 None:intergenic 15.0%
!! ATGAACATAAATTAATCAAA+AGG - chr3_1:92117624-92117643 None:intergenic 15.0%
!!! TTATGATTTTTACTTATTTG+GGG + chr3_1:92117998-92118017 Msa0388010:intron 15.0%
!!! TAGTAATTTTGATACATTTA+AGG - chr3_1:92118164-92118183 None:intergenic 15.0%
!! ATTTAATTAAACACAAAAGA+GGG - chr3_1:92118471-92118490 None:intergenic 15.0%
!! AATTTAATTAAACACAAAAG+AGG - chr3_1:92118472-92118491 None:intergenic 15.0%
!!! TTTTGTGTTTAATTAAATTC+AGG + chr3_1:92118473-92118492 Msa0388010:intron 15.0%
!!! AATTTAAAACAATTAGGTAT+GGG - chr3_1:92118903-92118922 None:intergenic 15.0%
!!! AAATTTAAAACAATTAGGTA+TGG - chr3_1:92118904-92118923 None:intergenic 15.0%
!!! TATTTTATAATTTGCTCAAT+AGG + chr3_1:92119046-92119065 Msa0388010:intron 15.0%
!!! ATTTTATAATTTGCTCAATA+GGG + chr3_1:92119047-92119066 Msa0388010:intron 15.0%
!! TAGTAAATAATAATGCTAAA+GGG - chr3_1:92119219-92119238 None:intergenic 15.0%
!!! TATTGTTTTTTTAATGTAGT+GGG + chr3_1:92119292-92119311 Msa0388010:intron 15.0%
!!! TTATTTTTTAATGCAAAACT+AGG + chr3_1:92119678-92119697 Msa0388010:intron 15.0%
!!! TATTTTTTAATGCAAAACTA+GGG + chr3_1:92119679-92119698 Msa0388010:intron 15.0%
!!! CTATAGTTGAATATTTTATA+TGG + chr3_1:92119770-92119789 Msa0388010:intron 15.0%
!!! TTTTCTTTTTTTTCTTTTCT+TGG - chr3_1:92120019-92120038 None:intergenic 15.0%
!!! ACTACTATAAATTTAACTTA+TGG + chr3_1:92120623-92120642 Msa0388010:three_prime_UTR 15.0%
!! TTCAAACTTAGTAAAATCTA+AGG - chr3_1:92116830-92116849 None:intergenic 20.0%
!!! CTCTCTTTTTTTAGTTATTT+TGG + chr3_1:92117215-92117234 Msa0388010:intron 20.0%
!!! AATGACTTTGTTTTTTTGTT+TGG + chr3_1:92117407-92117426 Msa0388010:intron 20.0%
!! AAGAATTTAATATCATGGTT+TGG - chr3_1:92117557-92117576 None:intergenic 20.0%
!! GAACATAAATTAATCAAAAG+GGG - chr3_1:92117622-92117641 None:intergenic 20.0%
!! TAATTTATGTTCATTATGTC+AGG + chr3_1:92117630-92117649 Msa0388010:intron 20.0%
!!! AAGATATAAATGGCTTTTTT+TGG + chr3_1:92117784-92117803 Msa0388010:intron 20.0%
!!! AGATATAAATGGCTTTTTTT+GGG + chr3_1:92117785-92117804 Msa0388010:intron 20.0%
!!! TATTTTGTTCTCTATTTTCT+TGG + chr3_1:92117972-92117991 Msa0388010:intron 20.0%
!!! TTGTCTTTTGTTAATTAGTT+TGG + chr3_1:92118229-92118248 Msa0388010:intron 20.0%
!! GTAGTAAATAATAATGCTAA+AGG - chr3_1:92119220-92119239 None:intergenic 20.0%
!!! CTATTGTTTTTTTAATGTAG+TGG + chr3_1:92119291-92119310 Msa0388010:intron 20.0%
!! TATAAGACAAGTATATCAAT+TGG - chr3_1:92119636-92119655 None:intergenic 20.0%
!!! TTGAATATTTTATATGGTCA+TGG + chr3_1:92119776-92119795 Msa0388010:intron 20.0%
!!! TTTTTTGTTGTTCTAATTGT+TGG + chr3_1:92120136-92120155 Msa0388010:intron 20.0%
!! TTATTATTCTGACATTTACT+TGG - chr3_1:92120503-92120522 None:intergenic 20.0%
!! TTCAAACTTAGTAAAATCTA+AGG - chr3_1:92116830-92116849 None:intergenic 20.0%
!!! CTCTCTTTTTTTAGTTATTT+TGG + chr3_1:92117215-92117234 Msa0388010:intron 20.0%
!!! AATGACTTTGTTTTTTTGTT+TGG + chr3_1:92117407-92117426 Msa0388010:intron 20.0%
!! AAGAATTTAATATCATGGTT+TGG - chr3_1:92117557-92117576 None:intergenic 20.0%
!! GAACATAAATTAATCAAAAG+GGG - chr3_1:92117622-92117641 None:intergenic 20.0%
!! TAATTTATGTTCATTATGTC+AGG + chr3_1:92117630-92117649 Msa0388010:intron 20.0%
!!! AAGATATAAATGGCTTTTTT+TGG + chr3_1:92117784-92117803 Msa0388010:intron 20.0%
!!! AGATATAAATGGCTTTTTTT+GGG + chr3_1:92117785-92117804 Msa0388010:intron 20.0%
!!! TATTTTGTTCTCTATTTTCT+TGG + chr3_1:92117972-92117991 Msa0388010:intron 20.0%
!!! TTGTCTTTTGTTAATTAGTT+TGG + chr3_1:92118229-92118248 Msa0388010:intron 20.0%
!! GTAGTAAATAATAATGCTAA+AGG - chr3_1:92119220-92119239 None:intergenic 20.0%
!!! CTATTGTTTTTTTAATGTAG+TGG + chr3_1:92119291-92119310 Msa0388010:intron 20.0%
!! TATAAGACAAGTATATCAAT+TGG - chr3_1:92119636-92119655 None:intergenic 20.0%
!!! TTGAATATTTTATATGGTCA+TGG + chr3_1:92119776-92119795 Msa0388010:intron 20.0%
!!! TTTTTTGTTGTTCTAATTGT+TGG + chr3_1:92120136-92120155 Msa0388010:intron 20.0%
!! TTATTATTCTGACATTTACT+TGG - chr3_1:92120503-92120522 None:intergenic 20.0%
! GAATCAAATGAAAACGAAAA+CGG - chr3_1:92116764-92116783 None:intergenic 25.0%
! AGAATCTAACCATATGTATT+CGG - chr3_1:92116928-92116947 None:intergenic 25.0%
! AAAAGAGAGAAAATAATCAC+TGG - chr3_1:92117204-92117223 None:intergenic 25.0%
! AGAACAGAAAAAATCATCAT+GGG - chr3_1:92117335-92117354 None:intergenic 25.0%
!!! TTTAATATCATGGTTTGGTT+TGG - chr3_1:92117552-92117571 None:intergenic 25.0%
!! TTGTTGTATGATTTGTGATT+AGG + chr3_1:92118673-92118692 Msa0388010:intron 25.0%
! TGCACAATCATATAAGAAAA+TGG + chr3_1:92118842-92118861 Msa0388010:intron 25.0%
!!! GGTGAATTTTTTATTGTCAT+TGG + chr3_1:92118987-92119006 Msa0388010:intron 25.0%
! AACAAAGAAAGTTAGTTAGT+TGG - chr3_1:92119481-92119500 None:intergenic 25.0%
! GAATAACTTGATTCAAACTA+GGG - chr3_1:92119585-92119604 None:intergenic 25.0%
! AGAATAACTTGATTCAAACT+AGG - chr3_1:92119586-92119605 None:intergenic 25.0%
! AAAAACAAATGTTACAGACT+AGG - chr3_1:92120117-92120136 None:intergenic 25.0%
!!! ATTTGGTCATTGTTTTTTCT+AGG + chr3_1:92120390-92120409 Msa0388010:three_prime_UTR 25.0%
!!! TCATTGTTTTTTCTAGGATT+TGG + chr3_1:92120396-92120415 Msa0388010:three_prime_UTR 25.0%
!! TTGGATTTGTGTTATTGTTA+TGG + chr3_1:92120415-92120434 Msa0388010:three_prime_UTR 25.0%
!! ACTTTGTTTGTTTGAATTTG+AGG + chr3_1:92120443-92120462 Msa0388010:three_prime_UTR 25.0%
!!! CTTTTTGGTTGGATTTTTTT+TGG + chr3_1:92120653-92120672 Msa0388010:three_prime_UTR 25.0%
! TACAATGCATAATATATGCA+AGG - chr3_1:92120701-92120720 None:intergenic 25.0%
! GAATCAAATGAAAACGAAAA+CGG - chr3_1:92116764-92116783 None:intergenic 25.0%
! AGAATCTAACCATATGTATT+CGG - chr3_1:92116928-92116947 None:intergenic 25.0%
! AAAAGAGAGAAAATAATCAC+TGG - chr3_1:92117204-92117223 None:intergenic 25.0%
! AGAACAGAAAAAATCATCAT+GGG - chr3_1:92117335-92117354 None:intergenic 25.0%
!!! TTTAATATCATGGTTTGGTT+TGG - chr3_1:92117552-92117571 None:intergenic 25.0%
!! TTGTTGTATGATTTGTGATT+AGG + chr3_1:92118673-92118692 Msa0388010:intron 25.0%
! TGCACAATCATATAAGAAAA+TGG + chr3_1:92118842-92118861 Msa0388010:intron 25.0%
!!! GGTGAATTTTTTATTGTCAT+TGG + chr3_1:92118987-92119006 Msa0388010:intron 25.0%
! AACAAAGAAAGTTAGTTAGT+TGG - chr3_1:92119481-92119500 None:intergenic 25.0%
! GAATAACTTGATTCAAACTA+GGG - chr3_1:92119585-92119604 None:intergenic 25.0%
! AGAATAACTTGATTCAAACT+AGG - chr3_1:92119586-92119605 None:intergenic 25.0%
! AAAAACAAATGTTACAGACT+AGG - chr3_1:92120117-92120136 None:intergenic 25.0%
!!! ATTTGGTCATTGTTTTTTCT+AGG + chr3_1:92120390-92120409 Msa0388010:three_prime_UTR 25.0%
!!! TCATTGTTTTTTCTAGGATT+TGG + chr3_1:92120396-92120415 Msa0388010:three_prime_UTR 25.0%
!! TTGGATTTGTGTTATTGTTA+TGG + chr3_1:92120415-92120434 Msa0388010:three_prime_UTR 25.0%
!! ACTTTGTTTGTTTGAATTTG+AGG + chr3_1:92120443-92120462 Msa0388010:three_prime_UTR 25.0%
!!! CTTTTTGGTTGGATTTTTTT+TGG + chr3_1:92120653-92120672 Msa0388010:three_prime_UTR 25.0%
! TACAATGCATAATATATGCA+AGG - chr3_1:92120701-92120720 None:intergenic 25.0%
AAAAGATTATAGAGAAGGTG+AGG + chr3_1:92116660-92116679 Msa0388010:five_prime_UTR 30.0%
TCAAATCGAATCGAATCTTT+AGG + chr3_1:92116790-92116809 Msa0388010:five_prime_UTR 30.0%
!! TTTTGTTTGTAAGCATGTGA+GGG - chr3_1:92116961-92116980 None:intergenic 30.0%
!! TTTTTGTTTGTAAGCATGTG+AGG - chr3_1:92116962-92116981 None:intergenic 30.0%
! ATGATTCTAGAAAAACGTTG+CGG - chr3_1:92117102-92117121 None:intergenic 30.0%
!!! TAAGTTGATTTTGGGATATG+AGG + chr3_1:92117282-92117301 Msa0388010:intron 30.0%
CAGAACAGAAAAAATCATCA+TGG - chr3_1:92117336-92117355 None:intergenic 30.0%
!!! TGTTTTTTGATGGTTGAGTA+TGG + chr3_1:92117360-92117379 Msa0388010:intron 30.0%
CGCACAAGAATTTAATATCA+TGG - chr3_1:92117562-92117581 None:intergenic 30.0%
TATGTTCATTATGTCAGGAT+TGG + chr3_1:92117635-92117654 Msa0388010:intron 30.0%
!! GATTTTTACTTATTTGGGGT+TGG + chr3_1:92118002-92118021 Msa0388010:intron 30.0%
TCTAAATGGATCCTTGAAAA+TGG - chr3_1:92118047-92118066 None:intergenic 30.0%
!! TTTTCAAGGATCCATTTAGA+AGG + chr3_1:92118047-92118066 Msa0388010:CDS 30.0%
TTTCAAGGATCCATTTAGAA+GGG + chr3_1:92118048-92118067 Msa0388010:CDS 30.0%
ATATTGTTACCCCTTCTAAA+TGG - chr3_1:92118061-92118080 None:intergenic 30.0%
ATACATTTAAGGACTAACGA+CGG - chr3_1:92118153-92118172 None:intergenic 30.0%
CAGATGATTCAATATACAAC+AGG - chr3_1:92118387-92118406 None:intergenic 30.0%
! GTATGATTTGTGATTAGGTA+TGG + chr3_1:92118678-92118697 Msa0388010:intron 30.0%
TCTCATATTATTACCACTCA+TGG - chr3_1:92118873-92118892 None:intergenic 30.0%
! CTCAATTTGAACTTGTCTTT+TGG + chr3_1:92118966-92118985 Msa0388010:intron 30.0%
! AATAAGTCAAAAAGAGGTGT+TGG - chr3_1:92119434-92119453 None:intergenic 30.0%
CCATTCAATAAGTCAAAAAG+AGG - chr3_1:92119440-92119459 None:intergenic 30.0%
!!! CCTCTTTTTGACTTATTGAA+TGG + chr3_1:92119437-92119456 Msa0388010:intron 30.0%
! CTTTGTTTATGTTCCAATAG+AGG + chr3_1:92119494-92119513 Msa0388010:intron 30.0%
!!! AGCAAACCTTAATTGGTTTT+GGG - chr3_1:92119555-92119574 None:intergenic 30.0%
!! TAGCAAACCTTAATTGGTTT+TGG - chr3_1:92119556-92119575 None:intergenic 30.0%
TGGAAATAGCAAACCTTAAT+TGG - chr3_1:92119562-92119581 None:intergenic 30.0%
TATATCAATTGGAAAGGAGT+TGG - chr3_1:92119625-92119644 None:intergenic 30.0%
GACAAGTATATCAATTGGAA+AGG - chr3_1:92119631-92119650 None:intergenic 30.0%
TGACATTAACACCTTCTTAT+GGG + chr3_1:92119966-92119985 Msa0388010:CDS 30.0%
TTATTTGCTTACCCATAAGA+AGG - chr3_1:92119980-92119999 None:intergenic 30.0%
ATACGTAGTAGACTTGAAAT+CGG - chr3_1:92120066-92120085 None:intergenic 30.0%
! ATTTCAAGTCTACTACGTAT+GGG + chr3_1:92120066-92120085 Msa0388010:intron 30.0%
ATCATGGAAGTAACAACATA+TGG - chr3_1:92120282-92120301 None:intergenic 30.0%
GTTGATTACGCATTAGAATT+TGG + chr3_1:92120373-92120392 Msa0388010:three_prime_UTR 30.0%
GAAATATGAAACCTATAACG+AGG - chr3_1:92120469-92120488 None:intergenic 30.0%
!! ACTTATGGACAACTACTTTT+TGG + chr3_1:92120638-92120657 Msa0388010:three_prime_UTR 30.0%
!!! TTTGGTTGGATTTTTTTTGG+TGG + chr3_1:92120656-92120675 Msa0388010:three_prime_UTR 30.0%
AAAAGATTATAGAGAAGGTG+AGG + chr3_1:92116660-92116679 Msa0388010:five_prime_UTR 30.0%
TCAAATCGAATCGAATCTTT+AGG + chr3_1:92116790-92116809 Msa0388010:five_prime_UTR 30.0%
!! TTTTGTTTGTAAGCATGTGA+GGG - chr3_1:92116961-92116980 None:intergenic 30.0%
!! TTTTTGTTTGTAAGCATGTG+AGG - chr3_1:92116962-92116981 None:intergenic 30.0%
! ATGATTCTAGAAAAACGTTG+CGG - chr3_1:92117102-92117121 None:intergenic 30.0%
!!! TAAGTTGATTTTGGGATATG+AGG + chr3_1:92117282-92117301 Msa0388010:intron 30.0%
CAGAACAGAAAAAATCATCA+TGG - chr3_1:92117336-92117355 None:intergenic 30.0%
!!! TGTTTTTTGATGGTTGAGTA+TGG + chr3_1:92117360-92117379 Msa0388010:intron 30.0%
CGCACAAGAATTTAATATCA+TGG - chr3_1:92117562-92117581 None:intergenic 30.0%
TATGTTCATTATGTCAGGAT+TGG + chr3_1:92117635-92117654 Msa0388010:intron 30.0%
!! GATTTTTACTTATTTGGGGT+TGG + chr3_1:92118002-92118021 Msa0388010:intron 30.0%
TCTAAATGGATCCTTGAAAA+TGG - chr3_1:92118047-92118066 None:intergenic 30.0%
!! TTTTCAAGGATCCATTTAGA+AGG + chr3_1:92118047-92118066 Msa0388010:CDS 30.0%
TTTCAAGGATCCATTTAGAA+GGG + chr3_1:92118048-92118067 Msa0388010:CDS 30.0%
ATATTGTTACCCCTTCTAAA+TGG - chr3_1:92118061-92118080 None:intergenic 30.0%
ATACATTTAAGGACTAACGA+CGG - chr3_1:92118153-92118172 None:intergenic 30.0%
CAGATGATTCAATATACAAC+AGG - chr3_1:92118387-92118406 None:intergenic 30.0%
! GTATGATTTGTGATTAGGTA+TGG + chr3_1:92118678-92118697 Msa0388010:intron 30.0%
TCTCATATTATTACCACTCA+TGG - chr3_1:92118873-92118892 None:intergenic 30.0%
! CTCAATTTGAACTTGTCTTT+TGG + chr3_1:92118966-92118985 Msa0388010:intron 30.0%
! AATAAGTCAAAAAGAGGTGT+TGG - chr3_1:92119434-92119453 None:intergenic 30.0%
CCATTCAATAAGTCAAAAAG+AGG - chr3_1:92119440-92119459 None:intergenic 30.0%
!!! CCTCTTTTTGACTTATTGAA+TGG + chr3_1:92119437-92119456 Msa0388010:intron 30.0%
! CTTTGTTTATGTTCCAATAG+AGG + chr3_1:92119494-92119513 Msa0388010:intron 30.0%
!!! AGCAAACCTTAATTGGTTTT+GGG - chr3_1:92119555-92119574 None:intergenic 30.0%
!! TAGCAAACCTTAATTGGTTT+TGG - chr3_1:92119556-92119575 None:intergenic 30.0%
TGGAAATAGCAAACCTTAAT+TGG - chr3_1:92119562-92119581 None:intergenic 30.0%
TATATCAATTGGAAAGGAGT+TGG - chr3_1:92119625-92119644 None:intergenic 30.0%
GACAAGTATATCAATTGGAA+AGG - chr3_1:92119631-92119650 None:intergenic 30.0%
TGACATTAACACCTTCTTAT+GGG + chr3_1:92119966-92119985 Msa0388010:CDS 30.0%
TTATTTGCTTACCCATAAGA+AGG - chr3_1:92119980-92119999 None:intergenic 30.0%
ATACGTAGTAGACTTGAAAT+CGG - chr3_1:92120066-92120085 None:intergenic 30.0%
! ATTTCAAGTCTACTACGTAT+GGG + chr3_1:92120066-92120085 Msa0388010:intron 30.0%
ATCATGGAAGTAACAACATA+TGG - chr3_1:92120282-92120301 None:intergenic 30.0%
GTTGATTACGCATTAGAATT+TGG + chr3_1:92120373-92120392 Msa0388010:three_prime_UTR 30.0%
GAAATATGAAACCTATAACG+AGG - chr3_1:92120469-92120488 None:intergenic 30.0%
!! ACTTATGGACAACTACTTTT+TGG + chr3_1:92120638-92120657 Msa0388010:three_prime_UTR 30.0%
!!! TTTGGTTGGATTTTTTTTGG+TGG + chr3_1:92120656-92120675 Msa0388010:three_prime_UTR 30.0%
TAGGAACAGAAAAACCAACT+AGG + chr3_1:92116688-92116707 Msa0388010:five_prime_UTR 35.0%
!! GGTCTTATTTATAGCCTAGT+TGG - chr3_1:92116705-92116724 None:intergenic 35.0%
TTGTTGTGAACAGAGAAATG+AGG - chr3_1:92116736-92116755 None:intergenic 35.0%
!! CAAGGTTGATAAGATCTGAA+AGG - chr3_1:92116875-92116894 None:intergenic 35.0%
AAATCATCGCCGAATACATA+TGG + chr3_1:92116916-92116935 Msa0388010:CDS 35.0%
! AGTAGTGTTTTTCGTACGTA+CGG - chr3_1:92117034-92117053 None:intergenic 35.0%
!! TTTGGGATATGAGGATGTTT+TGG + chr3_1:92117291-92117310 Msa0388010:intron 35.0%
!!! GTTCTGACTCTGTTTTTTGA+TGG + chr3_1:92117350-92117369 Msa0388010:intron 35.0%
TATTGTACTTAGTGGTAGAC+TGG - chr3_1:92117524-92117543 None:intergenic 35.0%
!! TGGTTTGGTATTGTACTTAG+TGG - chr3_1:92117532-92117551 None:intergenic 35.0%
!! TATCATGGTTTGGTTTGGTT+TGG - chr3_1:92117547-92117566 None:intergenic 35.0%
ATAACTTCACTATCTTCTCC+AGG - chr3_1:92117891-92117910 None:intergenic 35.0%
TTCAAGGATCCATTTAGAAG+GGG + chr3_1:92118049-92118068 Msa0388010:CDS 35.0%
TAGAAGGGGTAACAATATCT+TGG + chr3_1:92118063-92118082 Msa0388010:CDS 35.0%
GTGTGTCTTGGAAAACATAT+TGG - chr3_1:92118259-92118278 None:intergenic 35.0%
AGTAGCAACAAAAGATACCA+TGG - chr3_1:92118600-92118619 None:intergenic 35.0%
ACAGTAAACAAGTGGCAAAA+AGG - chr3_1:92118639-92118658 None:intergenic 35.0%
ATCAGAACACAGTAAACAAG+TGG - chr3_1:92118647-92118666 None:intergenic 35.0%
ATTGATGTCTTTCTGCAACA+AGG - chr3_1:92118721-92118740 None:intergenic 35.0%
TGTTGCAGAAAGACATCAAT+TGG + chr3_1:92118721-92118740 Msa0388010:CDS 35.0%
AATGTGAGTCAACAATGTCA+CGG - chr3_1:92119112-92119131 None:intergenic 35.0%
ATCAACATCAGTGGAATCAA+TGG + chr3_1:92119155-92119174 Msa0388010:CDS 35.0%
GAAAGTTAGTTAGTTGGAGA+AGG - chr3_1:92119475-92119494 None:intergenic 35.0%
!!! CTTAATTGGTTTTGGGTCAA+AGG - chr3_1:92119548-92119567 None:intergenic 35.0%
CTTTGACCCAAAACCAATTA+AGG + chr3_1:92119546-92119565 Msa0388010:CDS 35.0%
TAACTTGATTCAAACTAGGG+TGG - chr3_1:92119582-92119601 None:intergenic 35.0%
TAATGCAAAACTAGGGTGAT+TGG + chr3_1:92119686-92119705 Msa0388010:intron 35.0%
TTGAAAGCAATTGAGAAGCT+TGG + chr3_1:92119868-92119887 Msa0388010:CDS 35.0%
TGAAAGCAATTGAGAAGCTT+GGG + chr3_1:92119869-92119888 Msa0388010:CDS 35.0%
CTGACATTAACACCTTCTTA+TGG + chr3_1:92119965-92119984 Msa0388010:CDS 35.0%
! GATTTCAAGTCTACTACGTA+TGG + chr3_1:92120065-92120084 Msa0388010:intron 35.0%
! TTTCAAGTCTACTACGTATG+GGG + chr3_1:92120067-92120086 Msa0388010:intron 35.0%
TATGGATCCATGTTAGATGA+TGG - chr3_1:92120264-92120283 None:intergenic 35.0%
AAAAATGCCAATGACCATGA+GGG + chr3_1:92120570-92120589 Msa0388010:three_prime_UTR 35.0%
!!! ATGGACAACTACTTTTTGGT+TGG + chr3_1:92120642-92120661 Msa0388010:three_prime_UTR 35.0%
!!! GTTGGATTTTTTTTGGTGGT+CGG + chr3_1:92120660-92120679 Msa0388010:three_prime_UTR 35.0%
!!! TTGGATTTTTTTTGGTGGTC+GGG + chr3_1:92120661-92120680 Msa0388010:three_prime_UTR 35.0%
CATAATATATGCAAGGTCTG+GGG - chr3_1:92120694-92120713 None:intergenic 35.0%
GCATAATATATGCAAGGTCT+GGG - chr3_1:92120695-92120714 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+TGG - chr3_1:92120696-92120715 None:intergenic 35.0%
TAGGAACAGAAAAACCAACT+AGG + chr3_1:92116688-92116707 Msa0388010:five_prime_UTR 35.0%
!! GGTCTTATTTATAGCCTAGT+TGG - chr3_1:92116705-92116724 None:intergenic 35.0%
TTGTTGTGAACAGAGAAATG+AGG - chr3_1:92116736-92116755 None:intergenic 35.0%
!! CAAGGTTGATAAGATCTGAA+AGG - chr3_1:92116875-92116894 None:intergenic 35.0%
AAATCATCGCCGAATACATA+TGG + chr3_1:92116916-92116935 Msa0388010:CDS 35.0%
! AGTAGTGTTTTTCGTACGTA+CGG - chr3_1:92117034-92117053 None:intergenic 35.0%
!! TTTGGGATATGAGGATGTTT+TGG + chr3_1:92117291-92117310 Msa0388010:intron 35.0%
!!! GTTCTGACTCTGTTTTTTGA+TGG + chr3_1:92117350-92117369 Msa0388010:intron 35.0%
TATTGTACTTAGTGGTAGAC+TGG - chr3_1:92117524-92117543 None:intergenic 35.0%
!! TGGTTTGGTATTGTACTTAG+TGG - chr3_1:92117532-92117551 None:intergenic 35.0%
!! TATCATGGTTTGGTTTGGTT+TGG - chr3_1:92117547-92117566 None:intergenic 35.0%
ATAACTTCACTATCTTCTCC+AGG - chr3_1:92117891-92117910 None:intergenic 35.0%
TTCAAGGATCCATTTAGAAG+GGG + chr3_1:92118049-92118068 Msa0388010:CDS 35.0%
TAGAAGGGGTAACAATATCT+TGG + chr3_1:92118063-92118082 Msa0388010:CDS 35.0%
GTGTGTCTTGGAAAACATAT+TGG - chr3_1:92118259-92118278 None:intergenic 35.0%
AGTAGCAACAAAAGATACCA+TGG - chr3_1:92118600-92118619 None:intergenic 35.0%
ACAGTAAACAAGTGGCAAAA+AGG - chr3_1:92118639-92118658 None:intergenic 35.0%
ATCAGAACACAGTAAACAAG+TGG - chr3_1:92118647-92118666 None:intergenic 35.0%
ATTGATGTCTTTCTGCAACA+AGG - chr3_1:92118721-92118740 None:intergenic 35.0%
TGTTGCAGAAAGACATCAAT+TGG + chr3_1:92118721-92118740 Msa0388010:CDS 35.0%
AATGTGAGTCAACAATGTCA+CGG - chr3_1:92119112-92119131 None:intergenic 35.0%
ATCAACATCAGTGGAATCAA+TGG + chr3_1:92119155-92119174 Msa0388010:CDS 35.0%
GAAAGTTAGTTAGTTGGAGA+AGG - chr3_1:92119475-92119494 None:intergenic 35.0%
!!! CTTAATTGGTTTTGGGTCAA+AGG - chr3_1:92119548-92119567 None:intergenic 35.0%
CTTTGACCCAAAACCAATTA+AGG + chr3_1:92119546-92119565 Msa0388010:CDS 35.0%
TAACTTGATTCAAACTAGGG+TGG - chr3_1:92119582-92119601 None:intergenic 35.0%
TAATGCAAAACTAGGGTGAT+TGG + chr3_1:92119686-92119705 Msa0388010:intron 35.0%
TTGAAAGCAATTGAGAAGCT+TGG + chr3_1:92119868-92119887 Msa0388010:CDS 35.0%
TGAAAGCAATTGAGAAGCTT+GGG + chr3_1:92119869-92119888 Msa0388010:CDS 35.0%
CTGACATTAACACCTTCTTA+TGG + chr3_1:92119965-92119984 Msa0388010:CDS 35.0%
! GATTTCAAGTCTACTACGTA+TGG + chr3_1:92120065-92120084 Msa0388010:intron 35.0%
! TTTCAAGTCTACTACGTATG+GGG + chr3_1:92120067-92120086 Msa0388010:intron 35.0%
TATGGATCCATGTTAGATGA+TGG - chr3_1:92120264-92120283 None:intergenic 35.0%
AAAAATGCCAATGACCATGA+GGG + chr3_1:92120570-92120589 Msa0388010:three_prime_UTR 35.0%
!!! ATGGACAACTACTTTTTGGT+TGG + chr3_1:92120642-92120661 Msa0388010:three_prime_UTR 35.0%
!!! GTTGGATTTTTTTTGGTGGT+CGG + chr3_1:92120660-92120679 Msa0388010:three_prime_UTR 35.0%
!!! TTGGATTTTTTTTGGTGGTC+GGG + chr3_1:92120661-92120680 Msa0388010:three_prime_UTR 35.0%
CATAATATATGCAAGGTCTG+GGG - chr3_1:92120694-92120713 None:intergenic 35.0%
GCATAATATATGCAAGGTCT+GGG - chr3_1:92120695-92120714 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+TGG - chr3_1:92120696-92120715 None:intergenic 35.0%
!!! GGAGAGACATGTTTTGGTTT+TGG - chr3_1:92116854-92116873 None:intergenic 40.0%
! CTGAAAGGAGAGACATGTTT+TGG - chr3_1:92116860-92116879 None:intergenic 40.0%
! GATGATTTTCTCGGTGGTTT+CGG - chr3_1:92116904-92116923 None:intergenic 40.0%
! GTATTCGGCGATGATTTTCT+CGG - chr3_1:92116913-92116932 None:intergenic 40.0%
! ATTCTAGAAAAACGTTGCGG+TGG - chr3_1:92117099-92117118 None:intergenic 40.0%
GTTCATTATGTCAGGATTGG+TGG + chr3_1:92117638-92117657 Msa0388010:intron 40.0%
GAACCATCATAGTTCCACTT+GGG - chr3_1:92117852-92117871 None:intergenic 40.0%
! GATCCTTGAAAATGGCTTGT+GGG - chr3_1:92118039-92118058 None:intergenic 40.0%
AAACATCATCGAGTGTGTCT+TGG - chr3_1:92118271-92118290 None:intergenic 40.0%
TTCTGATCCCTAAATGTGTG+AGG - chr3_1:92118331-92118350 None:intergenic 40.0%
ATCAGGATGGCTGAAAATCT+TGG - chr3_1:92118562-92118581 None:intergenic 40.0%
! ATGTTGTTGCTGAAGTACCA+TGG + chr3_1:92118580-92118599 Msa0388010:CDS 40.0%
! AAAGACATCAATTGGCCTCT+TGG + chr3_1:92118729-92118748 Msa0388010:CDS 40.0%
! TGAAAGTGAGTTTTCACCTG+AGG - chr3_1:92118780-92118799 None:intergenic 40.0%
CAATAGGGACCATACTATTG+TGG + chr3_1:92119062-92119081 Msa0388010:intron 40.0%
TACAAAGCCTGTCTTTATGC+CGG + chr3_1:92119131-92119150 Msa0388010:CDS 40.0%
TAAGTCCAACTTACTTGACC+AGG - chr3_1:92119191-92119210 None:intergenic 40.0%
! ATGTAGTGGGAATTCCAAGT+TGG + chr3_1:92119305-92119324 Msa0388010:intron 40.0%
!! ATGGGTTGCTCGTTACATTT+TGG + chr3_1:92119361-92119380 Msa0388010:CDS 40.0%
CAAAACTAGGGTGATTGGAA+TGG + chr3_1:92119691-92119710 Msa0388010:intron 40.0%
!! CTTGGTGCTACAGCATTATA+AGG - chr3_1:92119815-92119834 None:intergenic 40.0%
ACCAAGTCTATGAGAGAAGA+TGG + chr3_1:92119829-92119848 Msa0388010:CDS 40.0%
ACCATCTTCTCTCATAGACT+TGG - chr3_1:92119833-92119852 None:intergenic 40.0%
AAGTCTATGAGAGAAGATGG+TGG + chr3_1:92119832-92119851 Msa0388010:CDS 40.0%
TTCAAGTCTACTACGTATGG+GGG + chr3_1:92120068-92120087 Msa0388010:intron 40.0%
TGTTGTTCTAATTGTTGGCG+TGG + chr3_1:92120141-92120160 Msa0388010:intron 40.0%
!! CGTGGCTTGTGTTATTTGAA+GGG + chr3_1:92120159-92120178 Msa0388010:intron 40.0%
! GGAAAGGTTATTTCGAGGAT+AGG + chr3_1:92120235-92120254 Msa0388010:CDS 40.0%
! AAGGTTATTTCGAGGATAGG+AGG + chr3_1:92120238-92120257 Msa0388010:CDS 40.0%
TTATGGTTTCCAGAGAATGG+TGG - chr3_1:92120313-92120332 None:intergenic 40.0%
TACTTCAATGCATGTGTGTG+TGG - chr3_1:92120340-92120359 None:intergenic 40.0%
! TGAATTTGAGGCCTCGTTAT+AGG + chr3_1:92120455-92120474 Msa0388010:three_prime_UTR 40.0%
GAAAAATGCCAATGACCATG+AGG + chr3_1:92120569-92120588 Msa0388010:three_prime_UTR 40.0%
!!! TGGATTTTTTTTGGTGGTCG+GGG + chr3_1:92120662-92120681 Msa0388010:three_prime_UTR 40.0%
!!! GGAGAGACATGTTTTGGTTT+TGG - chr3_1:92116854-92116873 None:intergenic 40.0%
! CTGAAAGGAGAGACATGTTT+TGG - chr3_1:92116860-92116879 None:intergenic 40.0%
! GATGATTTTCTCGGTGGTTT+CGG - chr3_1:92116904-92116923 None:intergenic 40.0%
! GTATTCGGCGATGATTTTCT+CGG - chr3_1:92116913-92116932 None:intergenic 40.0%
! ATTCTAGAAAAACGTTGCGG+TGG - chr3_1:92117099-92117118 None:intergenic 40.0%
GTTCATTATGTCAGGATTGG+TGG + chr3_1:92117638-92117657 Msa0388010:intron 40.0%
GAACCATCATAGTTCCACTT+GGG - chr3_1:92117852-92117871 None:intergenic 40.0%
! GATCCTTGAAAATGGCTTGT+GGG - chr3_1:92118039-92118058 None:intergenic 40.0%
AAACATCATCGAGTGTGTCT+TGG - chr3_1:92118271-92118290 None:intergenic 40.0%
TTCTGATCCCTAAATGTGTG+AGG - chr3_1:92118331-92118350 None:intergenic 40.0%
ATCAGGATGGCTGAAAATCT+TGG - chr3_1:92118562-92118581 None:intergenic 40.0%
! ATGTTGTTGCTGAAGTACCA+TGG + chr3_1:92118580-92118599 Msa0388010:CDS 40.0%
! AAAGACATCAATTGGCCTCT+TGG + chr3_1:92118729-92118748 Msa0388010:CDS 40.0%
! TGAAAGTGAGTTTTCACCTG+AGG - chr3_1:92118780-92118799 None:intergenic 40.0%
CAATAGGGACCATACTATTG+TGG + chr3_1:92119062-92119081 Msa0388010:intron 40.0%
TACAAAGCCTGTCTTTATGC+CGG + chr3_1:92119131-92119150 Msa0388010:CDS 40.0%
TAAGTCCAACTTACTTGACC+AGG - chr3_1:92119191-92119210 None:intergenic 40.0%
! ATGTAGTGGGAATTCCAAGT+TGG + chr3_1:92119305-92119324 Msa0388010:intron 40.0%
!! ATGGGTTGCTCGTTACATTT+TGG + chr3_1:92119361-92119380 Msa0388010:CDS 40.0%
CAAAACTAGGGTGATTGGAA+TGG + chr3_1:92119691-92119710 Msa0388010:intron 40.0%
!! CTTGGTGCTACAGCATTATA+AGG - chr3_1:92119815-92119834 None:intergenic 40.0%
ACCAAGTCTATGAGAGAAGA+TGG + chr3_1:92119829-92119848 Msa0388010:CDS 40.0%
ACCATCTTCTCTCATAGACT+TGG - chr3_1:92119833-92119852 None:intergenic 40.0%
AAGTCTATGAGAGAAGATGG+TGG + chr3_1:92119832-92119851 Msa0388010:CDS 40.0%
TTCAAGTCTACTACGTATGG+GGG + chr3_1:92120068-92120087 Msa0388010:intron 40.0%
TGTTGTTCTAATTGTTGGCG+TGG + chr3_1:92120141-92120160 Msa0388010:intron 40.0%
!! CGTGGCTTGTGTTATTTGAA+GGG + chr3_1:92120159-92120178 Msa0388010:intron 40.0%
! GGAAAGGTTATTTCGAGGAT+AGG + chr3_1:92120235-92120254 Msa0388010:CDS 40.0%
! AAGGTTATTTCGAGGATAGG+AGG + chr3_1:92120238-92120257 Msa0388010:CDS 40.0%
TTATGGTTTCCAGAGAATGG+TGG - chr3_1:92120313-92120332 None:intergenic 40.0%
TACTTCAATGCATGTGTGTG+TGG - chr3_1:92120340-92120359 None:intergenic 40.0%
! TGAATTTGAGGCCTCGTTAT+AGG + chr3_1:92120455-92120474 Msa0388010:three_prime_UTR 40.0%
GAAAAATGCCAATGACCATG+AGG + chr3_1:92120569-92120588 Msa0388010:three_prime_UTR 40.0%
!!! TGGATTTTTTTTGGTGGTCG+GGG + chr3_1:92120662-92120681 Msa0388010:three_prime_UTR 40.0%
TAGAGAAGGTGAGGAAGACT+AGG + chr3_1:92116669-92116688 Msa0388010:five_prime_UTR 45.0%
ACAGAGAAATGAGGCAGTGT+GGG - chr3_1:92116727-92116746 None:intergenic 45.0%
AACAGAGAAATGAGGCAGTG+TGG - chr3_1:92116728-92116747 None:intergenic 45.0%
AGTGGTAGACTGGTAGGTTT+GGG - chr3_1:92117514-92117533 None:intergenic 45.0%
TAGTGGTAGACTGGTAGGTT+TGG - chr3_1:92117515-92117534 None:intergenic 45.0%
GTACTTAGTGGTAGACTGGT+AGG - chr3_1:92117520-92117539 None:intergenic 45.0%
! TATGTCAGGATTGGTGGATC+TGG + chr3_1:92117644-92117663 Msa0388010:intron 45.0%
CTTCCCAAGTGGAACTATGA+TGG + chr3_1:92117846-92117865 Msa0388010:CDS 45.0%
GGAACCATCATAGTTCCACT+TGG - chr3_1:92117853-92117872 None:intergenic 45.0%
AACTATGATGGTTCCAGCAC+AGG + chr3_1:92117858-92117877 Msa0388010:CDS 45.0%
GGATCCTTGAAAATGGCTTG+TGG - chr3_1:92118040-92118059 None:intergenic 45.0%
ATGTGTGAGGCGTGTCAATA+TGG - chr3_1:92118318-92118337 None:intergenic 45.0%
TTGACACGCCTCACACATTT+AGG + chr3_1:92118320-92118339 Msa0388010:intron 45.0%
TGACACGCCTCACACATTTA+GGG + chr3_1:92118321-92118340 Msa0388010:intron 45.0%
CTATTGCGAGTTTATGCAGC+TGG + chr3_1:92118426-92118445 Msa0388010:intron 45.0%
!! TGCAGCTGGTCTTGTTTCAT+TGG + chr3_1:92118440-92118459 Msa0388010:intron 45.0%
! TGTCTCTTGTTGGTGGGAAT+GGG - chr3_1:92118531-92118550 None:intergenic 45.0%
! ATGTCTCTTGTTGGTGGGAA+TGG - chr3_1:92118532-92118551 None:intergenic 45.0%
CTTCAGCAACAACATCAGGA+TGG - chr3_1:92118575-92118594 None:intergenic 45.0%
GGTACTTCAGCAACAACATC+AGG - chr3_1:92118579-92118598 None:intergenic 45.0%
! ACATCAATTGGCCTCTTGGT+TGG + chr3_1:92118733-92118752 Msa0388010:CDS 45.0%
GAAAATGGTGTGACCATGAG+TGG + chr3_1:92118857-92118876 Msa0388010:intron 45.0%
GATTCCACTGATGTTGATGC+CGG - chr3_1:92119153-92119172 None:intergenic 45.0%
ATCAATGGTGAAGTGATGCC+TGG + chr3_1:92119170-92119189 Msa0388010:CDS 45.0%
TGATGCCTGGTCAAGTAAGT+TGG + chr3_1:92119183-92119202 Msa0388010:intron 45.0%
! TCTCTGCTGGTGATGAGATA+TGG + chr3_1:92119342-92119361 Msa0388010:CDS 45.0%
! CTCTGCTGGTGATGAGATAT+GGG + chr3_1:92119343-92119362 Msa0388010:CDS 45.0%
! GGTTGCTCGTTACATTTTGG+AGG + chr3_1:92119364-92119383 Msa0388010:CDS 45.0%
!! GCTCGTTACATTTTGGAGGT+AGG + chr3_1:92119368-92119387 Msa0388010:intron 45.0%
!! CGTTACATTTTGGAGGTAGG+TGG + chr3_1:92119371-92119390 Msa0388010:intron 45.0%
GTTCCAATAGAGGATCACTG+AGG + chr3_1:92119504-92119523 Msa0388010:intron 45.0%
CAACCTCAGTGATCCTCTAT+TGG - chr3_1:92119510-92119529 None:intergenic 45.0%
CTGGTGCTCACACAAATTAC+AGG + chr3_1:92119716-92119735 Msa0388010:CDS 45.0%
! AAGGAGCACATTGCTGCTTA+TGG + chr3_1:92119901-92119920 Msa0388010:CDS 45.0%
! CACATTGCTGCTTATGGAGA+AGG + chr3_1:92119907-92119926 Msa0388010:CDS 45.0%
TCAAGTCTACTACGTATGGG+GGG + chr3_1:92120069-92120088 Msa0388010:intron 45.0%
!! GCGTGGCTTGTGTTATTTGA+AGG + chr3_1:92120158-92120177 Msa0388010:intron 45.0%
!! TGCGTCGATTAGAGTTGGAA+GGG + chr3_1:92120197-92120216 Msa0388010:CDS 45.0%
! AGCAGGGAAAGGTTATTTCG+AGG + chr3_1:92120230-92120249 Msa0388010:CDS 45.0%
TAGGAGGCCATCATCTAACA+TGG + chr3_1:92120254-92120273 Msa0388010:CDS 45.0%
! AATGGTGGTGTCTGCAATCA+TGG - chr3_1:92120298-92120317 None:intergenic 45.0%
GGCTTATGGTTTCCAGAGAA+TGG - chr3_1:92120316-92120335 None:intergenic 45.0%
TTCAATGCATGTGTGTGTGG+TGG - chr3_1:92120337-92120356 None:intergenic 45.0%
TAGAGAAGGTGAGGAAGACT+AGG + chr3_1:92116669-92116688 Msa0388010:five_prime_UTR 45.0%
ACAGAGAAATGAGGCAGTGT+GGG - chr3_1:92116727-92116746 None:intergenic 45.0%
AACAGAGAAATGAGGCAGTG+TGG - chr3_1:92116728-92116747 None:intergenic 45.0%
AGTGGTAGACTGGTAGGTTT+GGG - chr3_1:92117514-92117533 None:intergenic 45.0%
TAGTGGTAGACTGGTAGGTT+TGG - chr3_1:92117515-92117534 None:intergenic 45.0%
GTACTTAGTGGTAGACTGGT+AGG - chr3_1:92117520-92117539 None:intergenic 45.0%
! TATGTCAGGATTGGTGGATC+TGG + chr3_1:92117644-92117663 Msa0388010:intron 45.0%
CTTCCCAAGTGGAACTATGA+TGG + chr3_1:92117846-92117865 Msa0388010:CDS 45.0%
GGAACCATCATAGTTCCACT+TGG - chr3_1:92117853-92117872 None:intergenic 45.0%
AACTATGATGGTTCCAGCAC+AGG + chr3_1:92117858-92117877 Msa0388010:CDS 45.0%
GGATCCTTGAAAATGGCTTG+TGG - chr3_1:92118040-92118059 None:intergenic 45.0%
ATGTGTGAGGCGTGTCAATA+TGG - chr3_1:92118318-92118337 None:intergenic 45.0%
TTGACACGCCTCACACATTT+AGG + chr3_1:92118320-92118339 Msa0388010:intron 45.0%
TGACACGCCTCACACATTTA+GGG + chr3_1:92118321-92118340 Msa0388010:intron 45.0%
CTATTGCGAGTTTATGCAGC+TGG + chr3_1:92118426-92118445 Msa0388010:intron 45.0%
!! TGCAGCTGGTCTTGTTTCAT+TGG + chr3_1:92118440-92118459 Msa0388010:intron 45.0%
! TGTCTCTTGTTGGTGGGAAT+GGG - chr3_1:92118531-92118550 None:intergenic 45.0%
! ATGTCTCTTGTTGGTGGGAA+TGG - chr3_1:92118532-92118551 None:intergenic 45.0%
CTTCAGCAACAACATCAGGA+TGG - chr3_1:92118575-92118594 None:intergenic 45.0%
GGTACTTCAGCAACAACATC+AGG - chr3_1:92118579-92118598 None:intergenic 45.0%
! ACATCAATTGGCCTCTTGGT+TGG + chr3_1:92118733-92118752 Msa0388010:CDS 45.0%
GAAAATGGTGTGACCATGAG+TGG + chr3_1:92118857-92118876 Msa0388010:intron 45.0%
GATTCCACTGATGTTGATGC+CGG - chr3_1:92119153-92119172 None:intergenic 45.0%
ATCAATGGTGAAGTGATGCC+TGG + chr3_1:92119170-92119189 Msa0388010:CDS 45.0%
TGATGCCTGGTCAAGTAAGT+TGG + chr3_1:92119183-92119202 Msa0388010:intron 45.0%
! TCTCTGCTGGTGATGAGATA+TGG + chr3_1:92119342-92119361 Msa0388010:CDS 45.0%
! CTCTGCTGGTGATGAGATAT+GGG + chr3_1:92119343-92119362 Msa0388010:CDS 45.0%
! GGTTGCTCGTTACATTTTGG+AGG + chr3_1:92119364-92119383 Msa0388010:CDS 45.0%
!! GCTCGTTACATTTTGGAGGT+AGG + chr3_1:92119368-92119387 Msa0388010:intron 45.0%
!! CGTTACATTTTGGAGGTAGG+TGG + chr3_1:92119371-92119390 Msa0388010:intron 45.0%
GTTCCAATAGAGGATCACTG+AGG + chr3_1:92119504-92119523 Msa0388010:intron 45.0%
CAACCTCAGTGATCCTCTAT+TGG - chr3_1:92119510-92119529 None:intergenic 45.0%
CTGGTGCTCACACAAATTAC+AGG + chr3_1:92119716-92119735 Msa0388010:CDS 45.0%
! AAGGAGCACATTGCTGCTTA+TGG + chr3_1:92119901-92119920 Msa0388010:CDS 45.0%
! CACATTGCTGCTTATGGAGA+AGG + chr3_1:92119907-92119926 Msa0388010:CDS 45.0%
TCAAGTCTACTACGTATGGG+GGG + chr3_1:92120069-92120088 Msa0388010:intron 45.0%
!! GCGTGGCTTGTGTTATTTGA+AGG + chr3_1:92120158-92120177 Msa0388010:intron 45.0%
!! TGCGTCGATTAGAGTTGGAA+GGG + chr3_1:92120197-92120216 Msa0388010:CDS 45.0%
! AGCAGGGAAAGGTTATTTCG+AGG + chr3_1:92120230-92120249 Msa0388010:CDS 45.0%
TAGGAGGCCATCATCTAACA+TGG + chr3_1:92120254-92120273 Msa0388010:CDS 45.0%
! AATGGTGGTGTCTGCAATCA+TGG - chr3_1:92120298-92120317 None:intergenic 45.0%
GGCTTATGGTTTCCAGAGAA+TGG - chr3_1:92120316-92120335 None:intergenic 45.0%
TTCAATGCATGTGTGTGTGG+TGG - chr3_1:92120337-92120356 None:intergenic 45.0%
!! ATAAAAAAAAAAAATAATCA+TGG - chr3_1:92117140-92117159 None:intergenic 5.0%
!! ATAAAAAAAAAAAATAATCA+TGG - chr3_1:92117140-92117159 None:intergenic 5.0%
CAGAGAAATGAGGCAGTGTG+GGG - chr3_1:92116726-92116745 None:intergenic 50.0%
! TTTTCTCGGTGGTTTCGGAG+AGG - chr3_1:92116899-92116918 None:intergenic 50.0%
! TTCGGCGATGATTTTCTCGG+TGG - chr3_1:92116910-92116929 None:intergenic 50.0%
! CAGGATTGGTGGATCTGGTT+TGG + chr3_1:92117649-92117668 Msa0388010:intron 50.0%
!! GTGGATCTGGTTTGGACTTG+AGG + chr3_1:92117657-92117676 Msa0388010:CDS 50.0%
TGGACTTGAGGAGCAAAGCA+AGG + chr3_1:92117669-92117688 Msa0388010:CDS 50.0%
GGACTTGAGGAGCAAAGCAA+GGG + chr3_1:92117670-92117689 Msa0388010:CDS 50.0%
!! TTTTGGGTGCAGACTCTACC+AGG + chr3_1:92117801-92117820 Msa0388010:intron 50.0%
AGCTGTGAAGGGTCAGTAAC+TGG - chr3_1:92117828-92117847 None:intergenic 50.0%
TCCACTTGGGAAGCTGTGAA+GGG - chr3_1:92117839-92117858 None:intergenic 50.0%
TTCCACTTGGGAAGCTGTGA+AGG - chr3_1:92117840-92117859 None:intergenic 50.0%
!! CAGCCCACAAGCCATTTTCA+AGG + chr3_1:92118033-92118052 Msa0388010:intron 50.0%
TGTGATGCATACACTCCAGC+TGG + chr3_1:92118501-92118520 Msa0388010:CDS 50.0%
GCTGCATGTCTCTTGTTGGT+GGG - chr3_1:92118537-92118556 None:intergenic 50.0%
AGCTGCATGTCTCTTGTTGG+TGG - chr3_1:92118538-92118557 None:intergenic 50.0%
! TGAGTTTTCACCTGAGGTCC+AGG - chr3_1:92118774-92118793 None:intergenic 50.0%
GGACCATACTATTGTGGTGC+TGG + chr3_1:92119068-92119087 Msa0388010:CDS 50.0%
GCACCAGCACCACAATAGTA+TGG - chr3_1:92119074-92119093 None:intergenic 50.0%
GTTGATGCCGGCATAAAGAC+AGG - chr3_1:92119141-92119160 None:intergenic 50.0%
TATGCCGGCATCAACATCAG+TGG + chr3_1:92119146-92119165 Msa0388010:CDS 50.0%
!! TTCCAAGTTGGTCCCTCAGT+TGG + chr3_1:92119317-92119336 Msa0388010:CDS 50.0%
TACCAACTGAGGGACCAACT+TGG - chr3_1:92119322-92119341 None:intergenic 50.0%
CCAGCAGAGATACCAACTGA+GGG - chr3_1:92119332-92119351 None:intergenic 50.0%
ACCAGCAGAGATACCAACTG+AGG - chr3_1:92119333-92119352 None:intergenic 50.0%
TAGAGGATCACTGAGGTTGC+TGG + chr3_1:92119511-92119530 Msa0388010:intron 50.0%
TAGGGTGATTGGAATGGTGC+TGG + chr3_1:92119697-92119716 Msa0388010:intron 50.0%
! GAAGCTTGGGAAGAAGCACA+AGG + chr3_1:92119882-92119901 Msa0388010:CDS 50.0%
GCAACGAGCGTAGATTGACA+GGG + chr3_1:92119929-92119948 Msa0388010:CDS 50.0%
! TACGTATGGGGGGATTAGTG+CGG + chr3_1:92120079-92120098 Msa0388010:intron 50.0%
!! TTGAAGGGTGTTGCAAACCG+TGG + chr3_1:92120174-92120193 Msa0388010:intron 50.0%
CAACTCTAATCGACGCACCA+CGG - chr3_1:92120194-92120213 None:intergenic 50.0%
!! GTGCGTCGATTAGAGTTGGA+AGG + chr3_1:92120196-92120215 Msa0388010:CDS 50.0%
GAAGGGACACAGAGAAAGCA+GGG + chr3_1:92120214-92120233 Msa0388010:CDS 50.0%
GACACAGAGAAAGCAGGGAA+AGG + chr3_1:92120219-92120238 Msa0388010:CDS 50.0%
TTGCAGACACCACCATTCTC+TGG + chr3_1:92120301-92120320 Msa0388010:CDS 50.0%
CATGTGTGTGTGGTGGCTTA+TGG - chr3_1:92120330-92120349 None:intergenic 50.0%
CCTTCTTCCCTCATGGTCAT+TGG - chr3_1:92120580-92120599 None:intergenic 50.0%
CCAATGACCATGAGGGAAGA+AGG + chr3_1:92120577-92120596 Msa0388010:three_prime_UTR 50.0%
ATTCCTGCCTTCTTCCCTCA+TGG - chr3_1:92120587-92120606 None:intergenic 50.0%
TTGTGAGCTGCTCAGTTGGT+AGG - chr3_1:92120724-92120743 None:intergenic 50.0%
TACCAACTGAGCAGCTCACA+AGG + chr3_1:92120723-92120742 Msa0388010:three_prime_UTR 50.0%
CAGAGAAATGAGGCAGTGTG+GGG - chr3_1:92116726-92116745 None:intergenic 50.0%
! TTTTCTCGGTGGTTTCGGAG+AGG - chr3_1:92116899-92116918 None:intergenic 50.0%
! TTCGGCGATGATTTTCTCGG+TGG - chr3_1:92116910-92116929 None:intergenic 50.0%
! CAGGATTGGTGGATCTGGTT+TGG + chr3_1:92117649-92117668 Msa0388010:intron 50.0%
!! GTGGATCTGGTTTGGACTTG+AGG + chr3_1:92117657-92117676 Msa0388010:CDS 50.0%
TGGACTTGAGGAGCAAAGCA+AGG + chr3_1:92117669-92117688 Msa0388010:CDS 50.0%
GGACTTGAGGAGCAAAGCAA+GGG + chr3_1:92117670-92117689 Msa0388010:CDS 50.0%
!! TTTTGGGTGCAGACTCTACC+AGG + chr3_1:92117801-92117820 Msa0388010:intron 50.0%
AGCTGTGAAGGGTCAGTAAC+TGG - chr3_1:92117828-92117847 None:intergenic 50.0%
TCCACTTGGGAAGCTGTGAA+GGG - chr3_1:92117839-92117858 None:intergenic 50.0%
TTCCACTTGGGAAGCTGTGA+AGG - chr3_1:92117840-92117859 None:intergenic 50.0%
!! CAGCCCACAAGCCATTTTCA+AGG + chr3_1:92118033-92118052 Msa0388010:intron 50.0%
TGTGATGCATACACTCCAGC+TGG + chr3_1:92118501-92118520 Msa0388010:CDS 50.0%
GCTGCATGTCTCTTGTTGGT+GGG - chr3_1:92118537-92118556 None:intergenic 50.0%
AGCTGCATGTCTCTTGTTGG+TGG - chr3_1:92118538-92118557 None:intergenic 50.0%
! TGAGTTTTCACCTGAGGTCC+AGG - chr3_1:92118774-92118793 None:intergenic 50.0%
GGACCATACTATTGTGGTGC+TGG + chr3_1:92119068-92119087 Msa0388010:CDS 50.0%
GCACCAGCACCACAATAGTA+TGG - chr3_1:92119074-92119093 None:intergenic 50.0%
GTTGATGCCGGCATAAAGAC+AGG - chr3_1:92119141-92119160 None:intergenic 50.0%
TATGCCGGCATCAACATCAG+TGG + chr3_1:92119146-92119165 Msa0388010:CDS 50.0%
!! TTCCAAGTTGGTCCCTCAGT+TGG + chr3_1:92119317-92119336 Msa0388010:CDS 50.0%
TACCAACTGAGGGACCAACT+TGG - chr3_1:92119322-92119341 None:intergenic 50.0%
CCAGCAGAGATACCAACTGA+GGG - chr3_1:92119332-92119351 None:intergenic 50.0%
ACCAGCAGAGATACCAACTG+AGG - chr3_1:92119333-92119352 None:intergenic 50.0%
TAGAGGATCACTGAGGTTGC+TGG + chr3_1:92119511-92119530 Msa0388010:intron 50.0%
TAGGGTGATTGGAATGGTGC+TGG + chr3_1:92119697-92119716 Msa0388010:intron 50.0%
! GAAGCTTGGGAAGAAGCACA+AGG + chr3_1:92119882-92119901 Msa0388010:CDS 50.0%
GCAACGAGCGTAGATTGACA+GGG + chr3_1:92119929-92119948 Msa0388010:CDS 50.0%
! TACGTATGGGGGGATTAGTG+CGG + chr3_1:92120079-92120098 Msa0388010:intron 50.0%
!! TTGAAGGGTGTTGCAAACCG+TGG + chr3_1:92120174-92120193 Msa0388010:intron 50.0%
CAACTCTAATCGACGCACCA+CGG - chr3_1:92120194-92120213 None:intergenic 50.0%
!! GTGCGTCGATTAGAGTTGGA+AGG + chr3_1:92120196-92120215 Msa0388010:CDS 50.0%
GAAGGGACACAGAGAAAGCA+GGG + chr3_1:92120214-92120233 Msa0388010:CDS 50.0%
GACACAGAGAAAGCAGGGAA+AGG + chr3_1:92120219-92120238 Msa0388010:CDS 50.0%
TTGCAGACACCACCATTCTC+TGG + chr3_1:92120301-92120320 Msa0388010:CDS 50.0%
CATGTGTGTGTGGTGGCTTA+TGG - chr3_1:92120330-92120349 None:intergenic 50.0%
CCTTCTTCCCTCATGGTCAT+TGG - chr3_1:92120580-92120599 None:intergenic 50.0%
CCAATGACCATGAGGGAAGA+AGG + chr3_1:92120577-92120596 Msa0388010:three_prime_UTR 50.0%
ATTCCTGCCTTCTTCCCTCA+TGG - chr3_1:92120587-92120606 None:intergenic 50.0%
TTGTGAGCTGCTCAGTTGGT+AGG - chr3_1:92120724-92120743 None:intergenic 50.0%
TACCAACTGAGCAGCTCACA+AGG + chr3_1:92120723-92120742 Msa0388010:three_prime_UTR 50.0%
GAAGGGTCAGTAACTGGACC+TGG - chr3_1:92117822-92117841 None:intergenic 55.0%
ACCCTTCACAGCTTCCCAAG+TGG + chr3_1:92117835-92117854 Msa0388010:CDS 55.0%
GGCAGCTGCATGTCTCTTGT+TGG - chr3_1:92118541-92118560 None:intergenic 55.0%
!!! TGGCCAGTTGGTGGTTTTCC+TGG + chr3_1:92118753-92118772 Msa0388010:CDS 55.0%
GGTCCAGGAAAACCACCAAC+TGG - chr3_1:92118759-92118778 None:intergenic 55.0%
! TGGTGGTTTTCCTGGACCTC+AGG + chr3_1:92118761-92118780 Msa0388010:CDS 55.0%
!! TTGTGGTGCTGGTGCTGACA+AGG + chr3_1:92119079-92119098 Msa0388010:CDS 55.0%
!! GCTGGTGCTGACAAGGCATT+TGG + chr3_1:92119086-92119105 Msa0388010:CDS 55.0%
! CCCTCAGTTGGTATCTCTGC+TGG + chr3_1:92119329-92119348 Msa0388010:CDS 55.0%
GATCACTGAGGTTGCTGGTG+TGG + chr3_1:92119516-92119535 Msa0388010:CDS 55.0%
GGCAACGAGCGTAGATTGAC+AGG + chr3_1:92119928-92119947 Msa0388010:CDS 55.0%
! TATGGGGGGATTAGTGCGGT+TGG + chr3_1:92120083-92120102 Msa0388010:intron 55.0%
! ATGGGGGGATTAGTGCGGTT+GGG + chr3_1:92120084-92120103 Msa0388010:intron 55.0%
!! CGTGGTGCGTCGATTAGAGT+TGG + chr3_1:92120192-92120211 Msa0388010:CDS 55.0%
GGAAGGGACACAGAGAAAGC+AGG + chr3_1:92120213-92120232 Msa0388010:CDS 55.0%
TGACCATGAGGGAAGAAGGC+AGG + chr3_1:92120581-92120600 Msa0388010:three_prime_UTR 55.0%
GTCCTTGTGAGCTGCTCAGT+TGG - chr3_1:92120728-92120747 None:intergenic 55.0%
GAAGGGTCAGTAACTGGACC+TGG - chr3_1:92117822-92117841 None:intergenic 55.0%
ACCCTTCACAGCTTCCCAAG+TGG + chr3_1:92117835-92117854 Msa0388010:CDS 55.0%
GGCAGCTGCATGTCTCTTGT+TGG - chr3_1:92118541-92118560 None:intergenic 55.0%
!!! TGGCCAGTTGGTGGTTTTCC+TGG + chr3_1:92118753-92118772 Msa0388010:CDS 55.0%
GGTCCAGGAAAACCACCAAC+TGG - chr3_1:92118759-92118778 None:intergenic 55.0%
! TGGTGGTTTTCCTGGACCTC+AGG + chr3_1:92118761-92118780 Msa0388010:CDS 55.0%
!! TTGTGGTGCTGGTGCTGACA+AGG + chr3_1:92119079-92119098 Msa0388010:CDS 55.0%
!! GCTGGTGCTGACAAGGCATT+TGG + chr3_1:92119086-92119105 Msa0388010:CDS 55.0%
! CCCTCAGTTGGTATCTCTGC+TGG + chr3_1:92119329-92119348 Msa0388010:CDS 55.0%
GATCACTGAGGTTGCTGGTG+TGG + chr3_1:92119516-92119535 Msa0388010:CDS 55.0%
GGCAACGAGCGTAGATTGAC+AGG + chr3_1:92119928-92119947 Msa0388010:CDS 55.0%
! TATGGGGGGATTAGTGCGGT+TGG + chr3_1:92120083-92120102 Msa0388010:intron 55.0%
! ATGGGGGGATTAGTGCGGTT+GGG + chr3_1:92120084-92120103 Msa0388010:intron 55.0%
!! CGTGGTGCGTCGATTAGAGT+TGG + chr3_1:92120192-92120211 Msa0388010:CDS 55.0%
GGAAGGGACACAGAGAAAGC+AGG + chr3_1:92120213-92120232 Msa0388010:CDS 55.0%
TGACCATGAGGGAAGAAGGC+AGG + chr3_1:92120581-92120600 Msa0388010:three_prime_UTR 55.0%
GTCCTTGTGAGCTGCTCAGT+TGG - chr3_1:92120728-92120747 None:intergenic 55.0%
CGGTGGTTTCGGAGAGGTCA+AGG - chr3_1:92116893-92116912 None:intergenic 60.0%
TCCAGCACAGGTCAAGCTCC+TGG + chr3_1:92117870-92117889 Msa0388010:CDS 60.0%
TCCAGGAGCTTGACCTGTGC+TGG - chr3_1:92117874-92117893 None:intergenic 60.0%
! GTGGGAATGGGTTCTCCAGC+TGG - chr3_1:92118519-92118538 None:intergenic 60.0%
! TGGCCTCTTGGTTGGCCAGT+TGG + chr3_1:92118741-92118760 Msa0388010:CDS 60.0%
CCACCAACTGGCCAACCAAG+AGG - chr3_1:92118747-92118766 None:intergenic 60.0%
! CCTCTTGGTTGGCCAGTTGG+TGG + chr3_1:92118744-92118763 Msa0388010:CDS 60.0%
! TGGGGGGATTAGTGCGGTTG+GGG + chr3_1:92120085-92120104 Msa0388010:intron 60.0%
CGGTGGTTTCGGAGAGGTCA+AGG - chr3_1:92116893-92116912 None:intergenic 60.0%
TCCAGCACAGGTCAAGCTCC+TGG + chr3_1:92117870-92117889 Msa0388010:CDS 60.0%
TCCAGGAGCTTGACCTGTGC+TGG - chr3_1:92117874-92117893 None:intergenic 60.0%
! GTGGGAATGGGTTCTCCAGC+TGG - chr3_1:92118519-92118538 None:intergenic 60.0%
! TGGCCTCTTGGTTGGCCAGT+TGG + chr3_1:92118741-92118760 Msa0388010:CDS 60.0%
CCACCAACTGGCCAACCAAG+AGG - chr3_1:92118747-92118766 None:intergenic 60.0%
! CCTCTTGGTTGGCCAGTTGG+TGG + chr3_1:92118744-92118763 Msa0388010:CDS 60.0%
! TGGGGGGATTAGTGCGGTTG+GGG + chr3_1:92120085-92120104 Msa0388010:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 92116659 92120747 92116659 ID=Msa0388010;Name=Msa0388010
chr3_1 mRNA 92116659 92120747 92116659 ID=Msa0388010-mRNA-1;Parent=Msa0388010;Name=Msa0388010-mRNA-1;_AED=0.13;_eAED=0.13;_QI=205|1|1|1|1|1|12|415|356
chr3_1 exon 92116659 92116937 92116659 ID=Msa0388010-mRNA-1:exon:25875;Parent=Msa0388010-mRNA-1
chr3_1 exon 92117652 92117691 92117652 ID=Msa0388010-mRNA-1:exon:25876;Parent=Msa0388010-mRNA-1
chr3_1 exon 92117813 92117916 92117813 ID=Msa0388010-mRNA-1:exon:25877;Parent=Msa0388010-mRNA-1
chr3_1 exon 92118036 92118084 92118036 ID=Msa0388010-mRNA-1:exon:25878;Parent=Msa0388010-mRNA-1
chr3_1 exon 92118495 92118601 92118495 ID=Msa0388010-mRNA-1:exon:25879;Parent=Msa0388010-mRNA-1
chr3_1 exon 92118695 92118782 92118695 ID=Msa0388010-mRNA-1:exon:25880;Parent=Msa0388010-mRNA-1
chr3_1 exon 92119068 92119196 92119068 ID=Msa0388010-mRNA-1:exon:25881;Parent=Msa0388010-mRNA-1
chr3_1 exon 92119311 92119385 92119311 ID=Msa0388010-mRNA-1:exon:25882;Parent=Msa0388010-mRNA-1
chr3_1 exon 92119514 92119567 92119514 ID=Msa0388010-mRNA-1:exon:25883;Parent=Msa0388010-mRNA-1
chr3_1 exon 92119700 92119737 92119700 ID=Msa0388010-mRNA-1:exon:25884;Parent=Msa0388010-mRNA-1
chr3_1 exon 92119828 92119987 92119828 ID=Msa0388010-mRNA-1:exon:25885;Parent=Msa0388010-mRNA-1
chr3_1 exon 92120180 92120747 92120180 ID=Msa0388010-mRNA-1:exon:25886;Parent=Msa0388010-mRNA-1
chr3_1 five_prime_UTR 92116659 92116863 92116659 ID=Msa0388010-mRNA-1:five_prime_utr;Parent=Msa0388010-mRNA-1
chr3_1 CDS 92116864 92116937 92116864 ID=Msa0388010-mRNA-1:cds;Parent=Msa0388010-mRNA-1
chr3_1 CDS 92117652 92117691 92117652 ID=Msa0388010-mRNA-1:cds;Parent=Msa0388010-mRNA-1
chr3_1 CDS 92117813 92117916 92117813 ID=Msa0388010-mRNA-1:cds;Parent=Msa0388010-mRNA-1
chr3_1 CDS 92118036 92118084 92118036 ID=Msa0388010-mRNA-1:cds;Parent=Msa0388010-mRNA-1
chr3_1 CDS 92118495 92118601 92118495 ID=Msa0388010-mRNA-1:cds;Parent=Msa0388010-mRNA-1
chr3_1 CDS 92118695 92118782 92118695 ID=Msa0388010-mRNA-1:cds;Parent=Msa0388010-mRNA-1
chr3_1 CDS 92119068 92119196 92119068 ID=Msa0388010-mRNA-1:cds;Parent=Msa0388010-mRNA-1
chr3_1 CDS 92119311 92119385 92119311 ID=Msa0388010-mRNA-1:cds;Parent=Msa0388010-mRNA-1
chr3_1 CDS 92119514 92119567 92119514 ID=Msa0388010-mRNA-1:cds;Parent=Msa0388010-mRNA-1
chr3_1 CDS 92119700 92119737 92119700 ID=Msa0388010-mRNA-1:cds;Parent=Msa0388010-mRNA-1
chr3_1 CDS 92119828 92119987 92119828 ID=Msa0388010-mRNA-1:cds;Parent=Msa0388010-mRNA-1
chr3_1 CDS 92120180 92120332 92120180 ID=Msa0388010-mRNA-1:cds;Parent=Msa0388010-mRNA-1
chr3_1 three_prime_UTR 92120333 92120747 92120333 ID=Msa0388010-mRNA-1:three_prime_utr;Parent=Msa0388010-mRNA-1
Gene Sequence

>Msa0388010

ATGTCTCTCCTTTCAGATCTTATCAACCTTGACCTCTCCGAAACCACCGAGAAAATCATCGCCGAATACATATGGATTGGTGGATCTGGTTTGGACTTGAGGAGCAAAGCAAGGACTCTACCAGGTCCAGTTACTGACCCTTCACAGCTTCCCAAGTGGAACTATGATGGTTCCAGCACAGGTCAAGCTCCTGGAGAAGATAGTGAAGTTATTATCTACCCACAAGCCATTTTCAAGGATCCATTTAGAAGGGGTAACAATATCTTGGTTATGTGTGATGCATACACTCCAGCTGGAGAACCCATTCCCACCAACAAGAGACATGCAGCTGCCAAGATTTTCAGCCATCCTGATGTTGTTGCTGAAGTACCATGGTATGGTATTGAGCAAGAATACACCTTGTTGCAGAAAGACATCAATTGGCCTCTTGGTTGGCCAGTTGGTGGTTTTCCTGGACCTCAGGGACCATACTATTGTGGTGCTGGTGCTGACAAGGCATTTGGCCGTGACATTGTTGACTCACATTACAAAGCCTGTCTTTATGCCGGCATCAACATCAGTGGAATCAATGGTGAAGTGATGCCTGGTCAATGGGAATTCCAAGTTGGTCCCTCAGTTGGTATCTCTGCTGGTGATGAGATATGGGTTGCTCGTTACATTTTGGAGAGGATCACTGAGGTTGCTGGTGTGGTGCTTTCCTTTGACCCAAAACCAATTAAGGGTGATTGGAATGGTGCTGGTGCTCACACAAATTACAGCACCAAGTCTATGAGAGAAGATGGTGGCTATGAAGTCATCTTGAAAGCAATTGAGAAGCTTGGGAAGAAGCACAAGGAGCACATTGCTGCTTATGGAGAAGGCAACGAGCGTAGATTGACAGGGCGACATGAGACAGCTGACATTAACACCTTCTTATGGGGTGTTGCAAACCGTGGTGCGTCGATTAGAGTTGGAAGGGACACAGAGAAAGCAGGGAAAGGTTATTTCGAGGATAGGAGGCCATCATCTAACATGGATCCATATGTTGTTACTTCCATGATTGCAGACACCACCATTCTCTGGAAACCATAA

Protein sequence

>Msa0388010

MSLLSDLINLDLSETTEKIIAEYIWIGGSGLDLRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHPDVVAEVPWYGIEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEVAGVVLSFDPKPIKGDWNGAGAHTNYSTKSMREDGGYEVILKAIEKLGKKHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPSSNMDPYVVTSMIADTTILWKP*