Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256960 | GAU26334.1 | 89.744 | 273 | 28 | 0 | 1 | 273 | 1 | 273 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256960 | sp|Q43675|USP_VICFA | 41.091 | 275 | 141 | 9 | 1 | 265 | 1 | 264 | 4.72e-67 | 212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256960 | A0A2Z6M1I5 | 89.744 | 273 | 28 | 0 | 1 | 273 | 1 | 273 | 0.0 | 523 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0217080 | Msa0256960 | 0.856226 | 3.711454e-62 | -8.615850e-47 |
| Msa0217090 | Msa0256960 | 0.831373 | 1.732078e-55 | -8.615850e-47 |
| Msa0256960 | Msa0296270 | 0.860979 | 1.415570e-63 | -8.615850e-47 |
| Msa0256960 | Msa0296280 | 0.936322 | 2.090271e-97 | -8.615850e-47 |
| Msa0256960 | Msa0334650 | 0.976345 | 1.195129e-141 | -8.615850e-47 |
| Msa0256960 | Msa0891010 | 0.842495 | 2.496969e-58 | -8.615850e-47 |
| Msa0256960 | Msa0990920 | 0.846611 | 1.947664e-59 | -8.615850e-47 |
| Msa0256960 | Msa1101620 | 0.819243 | 1.286652e-52 | -8.615850e-47 |
| Msa0256960 | Msa1153170 | 0.811795 | 5.855197e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256960 | MtrunA17_Chr2g0318901 | 87.546 | 273 | 34 | 0 | 1 | 273 | 1 | 273 | 0.0 | 513 |
| Msa0256960 | MtrunA17_Chr2g0318871 | 85.348 | 273 | 40 | 0 | 1 | 273 | 1 | 273 | 0.0 | 498 |
| Msa0256960 | MtrunA17_Chr2g0318931 | 66.171 | 269 | 82 | 5 | 1 | 261 | 5 | 272 | 1.61e-127 | 363 |
| Msa0256960 | MtrunA17_Chr8g0355861 | 43.657 | 268 | 136 | 7 | 1 | 260 | 1 | 261 | 7.80e-75 | 229 |
| Msa0256960 | MtrunA17_Chr8g0355321 | 37.540 | 309 | 129 | 6 | 10 | 260 | 1 | 303 | 3.55e-72 | 223 |
| Msa0256960 | MtrunA17_Chr1g0168781 | 40.809 | 272 | 145 | 7 | 1 | 264 | 1 | 264 | 3.19e-70 | 217 |
| Msa0256960 | MtrunA17_Chr8g0355871 | 45.918 | 196 | 97 | 3 | 71 | 259 | 29 | 222 | 1.29e-59 | 189 |
| Msa0256960 | MtrunA17_Chr8g0355841 | 52.532 | 158 | 74 | 1 | 111 | 268 | 362 | 518 | 1.51e-57 | 192 |
| Msa0256960 | MtrunA17_Chr8g0355311 | 51.613 | 155 | 74 | 1 | 111 | 265 | 43 | 196 | 2.02e-56 | 180 |
| Msa0256960 | MtrunA17_Chr8g0355331 | 51.449 | 138 | 67 | 0 | 129 | 266 | 291 | 428 | 4.15e-53 | 178 |
| Msa0256960 | MtrunA17_Chr8g0355831 | 59.848 | 132 | 53 | 0 | 129 | 260 | 221 | 352 | 8.58e-51 | 170 |
| Msa0256960 | MtrunA17_Chr1g0147261 | 33.663 | 303 | 149 | 12 | 1 | 257 | 1 | 297 | 5.23e-46 | 156 |
| Msa0256960 | MtrunA17_Chr3g0139431 | 30.408 | 319 | 155 | 12 | 6 | 259 | 5 | 321 | 1.27e-42 | 148 |
| Msa0256960 | MtrunA17_Chr1g0147311 | 30.183 | 328 | 152 | 10 | 5 | 258 | 30 | 354 | 2.48e-42 | 148 |
| Msa0256960 | MtrunA17_Chr1g0147331 | 29.938 | 324 | 153 | 10 | 5 | 258 | 4 | 323 | 1.29e-41 | 145 |
| Msa0256960 | MtrunA17_Chr1g0146631 | 29.630 | 324 | 154 | 11 | 5 | 258 | 4 | 323 | 1.61e-40 | 142 |
| Msa0256960 | MtrunA17_Chr1g0147241 | 30.351 | 313 | 159 | 11 | 1 | 257 | 1 | 310 | 3.72e-40 | 141 |
| Msa0256960 | MtrunA17_Chr1g0147301 | 33.047 | 233 | 122 | 9 | 57 | 258 | 54 | 283 | 2.02e-34 | 125 |
| Msa0256960 | MtrunA17_Chr1g0147271 | 34.579 | 214 | 111 | 7 | 73 | 258 | 171 | 383 | 6.81e-34 | 126 |
| Msa0256960 | MtrunA17_Chr1g0147291 | 32.895 | 228 | 125 | 9 | 57 | 258 | 40 | 265 | 1.11e-33 | 123 |
| Msa0256960 | MtrunA17_Chr1g0147321 | 33.333 | 222 | 120 | 9 | 62 | 257 | 16 | 235 | 4.69e-33 | 121 |
| Msa0256960 | MtrunA17_Chr1g0147251 | 30.396 | 227 | 125 | 6 | 58 | 257 | 20 | 240 | 4.58e-31 | 115 |
| Msa0256960 | MtrunA17_Chr3g0144421 | 29.954 | 217 | 123 | 7 | 72 | 259 | 86 | 302 | 1.77e-21 | 91.7 |
| Msa0256960 | MtrunA17_Chr4g0034821 | 30.493 | 223 | 119 | 10 | 72 | 261 | 74 | 293 | 8.10e-20 | 87.0 |
| Msa0256960 | MtrunA17_Chr3g0138231 | 32.877 | 146 | 88 | 4 | 126 | 261 | 123 | 268 | 7.24e-18 | 81.3 |
| Msa0256960 | MtrunA17_Chr3g0144391 | 30.085 | 236 | 121 | 10 | 60 | 259 | 278 | 505 | 1.03e-17 | 82.4 |
| Msa0256960 | MtrunA17_Chr3g0144411 | 30.493 | 223 | 112 | 9 | 72 | 259 | 324 | 538 | 1.76e-17 | 82.0 |
| Msa0256960 | MtrunA17_Chr3g0144451 | 34.247 | 146 | 86 | 5 | 126 | 261 | 132 | 277 | 6.46e-17 | 78.6 |
| Msa0256960 | MtrunA17_Chr4g0034451 | 33.562 | 146 | 85 | 7 | 126 | 259 | 381 | 526 | 1.11e-14 | 73.6 |
| Msa0256960 | MtrunA17_Chr4g0034691 | 32.414 | 145 | 86 | 7 | 127 | 259 | 564 | 708 | 2.54e-12 | 66.6 |
| Msa0256960 | MtrunA17_Chr4g0076231 | 27.660 | 141 | 93 | 4 | 126 | 257 | 16 | 156 | 3.25e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256960 | AT5G25610.1 | 33.036 | 224 | 121 | 8 | 63 | 257 | 166 | 389 | 9.68e-31 | 118 |
| Msa0256960 | AT1G49320.1 | 34.694 | 147 | 81 | 5 | 127 | 258 | 132 | 278 | 3.82e-16 | 77.0 |
Find 79 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTTCTCTCCAAGATTT+TGG | 0.104089 | 2_2:-52440482 | None:intergenic |
| ATGCAAGATCGTGCCTCTTT+AGG | 0.181649 | 2_2:-52440936 | None:intergenic |
| GAAATTGCAAATCCAATTAA+TGG | 0.208388 | 2_2:-52440384 | None:intergenic |
| AAATCCTTAGGACCATTAAT+TGG | 0.239448 | 2_2:+52440372 | Msa0256960:CDS |
| TCATGTTATAATAATGAAAA+TGG | 0.255013 | 2_2:+52440977 | Msa0256960:three_prime_UTR |
| GACAATAAAATACAACCTTT+TGG | 0.266567 | 2_2:-52440527 | None:intergenic |
| TTGTCATTTCCTAGGAAATA+AGG | 0.268344 | 2_2:+52440704 | Msa0256960:CDS |
| TGCAAGATCGTGCCTCTTTA+GGG | 0.269122 | 2_2:-52440935 | None:intergenic |
| AAGCTCATGTTGATAGAAAA+AGG | 0.279573 | 2_2:-52440181 | None:intergenic |
| CGTCCCTTTGCACAACCTTA+TGG | 0.298036 | 2_2:+52440240 | Msa0256960:CDS |
| CACTGCCTGAAGAAGAATAT+TGG | 0.300262 | 2_2:+52438306 | Msa0256960:CDS |
| TTCCTTGTTGATTGCAAGAA+TGG | 0.319276 | 2_2:+52437899 | Msa0256960:exon |
| TGGTGCCAATGTTGCTGTTT+AGG | 0.323507 | 2_2:+52440767 | Msa0256960:CDS |
| GCTTCCCAATATTCTTCTTC+AGG | 0.355894 | 2_2:-52438311 | None:intergenic |
| AAGAATATTGGGAAGCTGTT+TGG | 0.356329 | 2_2:+52438318 | Msa0256960:CDS |
| TGTAGCCAAGGCTATAGAAT+TGG | 0.358419 | 2_2:+52440877 | Msa0256960:three_prime_UTR |
| ATAAAATAGCCTTATTTCCT+AGG | 0.361639 | 2_2:-52440713 | None:intergenic |
| GCATTGTCCAAACCTAAATT+AGG | 0.363667 | 2_2:-52440741 | None:intergenic |
| ACTTCTAAAATTGTACAATA+AGG | 0.367555 | 2_2:-52441006 | None:intergenic |
| GTTTGTCATGCTGATACTTC+AGG | 0.375794 | 2_2:+52440624 | Msa0256960:CDS |
| GGATTTGCAATTTCAAAACT+TGG | 0.388201 | 2_2:+52440393 | Msa0256960:CDS |
| GATGTGCAGCTTGCACTTGC+AGG | 0.411503 | 2_2:+52438269 | Msa0256960:intron |
| ACTGCCTGAAGAAGAATATT+GGG | 0.412787 | 2_2:+52438307 | Msa0256960:CDS |
| GAAGTGGGAATGGGAGTATT+GGG | 0.413760 | 2_2:-52438341 | None:intergenic |
| TTTAGGTGTGCTCTCCATCA+TGG | 0.414422 | 2_2:+52440784 | Msa0256960:exon |
| TATCAACATGAGCTTTATCC+AGG | 0.416684 | 2_2:+52440189 | Msa0256960:CDS |
| AAACCTGTTTGTCATTTCCT+AGG | 0.419287 | 2_2:+52440696 | Msa0256960:CDS |
| ATGGGTACCTAATTTAGGTT+TGG | 0.424424 | 2_2:+52440734 | Msa0256960:CDS |
| ATAGAGTCAGTCCAAAATCT+TGG | 0.433215 | 2_2:+52440471 | Msa0256960:CDS |
| TCCTTGTTGATTGCAAGAAT+GGG | 0.433481 | 2_2:+52437900 | Msa0256960:exon |
| AGAAAGCAGTGATGTGTCAT+AGG | 0.434072 | 2_2:+52440496 | Msa0256960:CDS |
| TTGTTCATGCTTATCAATGA+AGG | 0.454114 | 2_2:-52440442 | None:intergenic |
| TAGAAGTTCTCGAAGAGAAG+TGG | 0.456535 | 2_2:-52438357 | None:intergenic |
| GTTGTACTTGTACCCTAAAG+AGG | 0.457493 | 2_2:+52440923 | Msa0256960:three_prime_UTR |
| TTTCCTAGGAAATGACAAAC+AGG | 0.459958 | 2_2:-52440699 | None:intergenic |
| AGAAGTGGGAATGGGAGTAT+TGG | 0.460203 | 2_2:-52438342 | None:intergenic |
| TTGAATTAGTTAATGAGTTG+AGG | 0.462170 | 2_2:-52441079 | None:intergenic |
| GTGTGTCATCAATTTCCATT+GGG | 0.467040 | 2_2:-52440146 | None:intergenic |
| AAATAACAACCTTGAGGTCC+AGG | 0.471918 | 2_2:-52438383 | None:intergenic |
| CTTCTTCAGGCAGTGATGCA+TGG | 0.473820 | 2_2:-52438298 | None:intergenic |
| GTTCCATCATTTGCCACCAA+TGG | 0.478916 | 2_2:-52440582 | None:intergenic |
| ACACCATAAGGTTGTGCAAA+GGG | 0.481077 | 2_2:-52440243 | None:intergenic |
| TCTATAGCCTTGGCTACAAA+AGG | 0.486665 | 2_2:-52440872 | None:intergenic |
| TTAGGTTTGGACAATGCCTA+TGG | 0.494021 | 2_2:+52440747 | Msa0256960:CDS |
| GAACTGAAATGAAAATGATA+AGG | 0.494524 | 2_2:-52437932 | None:intergenic |
| TTCTCGAAGAGAAGTGGGAA+TGG | 0.495855 | 2_2:-52438351 | None:intergenic |
| CTTCGAGAACTTCTAAAGCC+TGG | 0.497324 | 2_2:+52438365 | Msa0256960:CDS |
| TGTGTGTCATCAATTTCCAT+TGG | 0.497405 | 2_2:-52440147 | None:intergenic |
| AAGTGCAATTATTACAACTT+AGG | 0.497891 | 2_2:-52441143 | None:intergenic |
| GGTGTGCTCTCCATCATGGT+TGG | 0.507917 | 2_2:+52440788 | Msa0256960:exon |
| GTTCCATTGGTGGCAAATGA+TGG | 0.508291 | 2_2:+52440579 | Msa0256960:CDS |
| TAAGTCCAATTCTATAGCCT+TGG | 0.509018 | 2_2:-52440882 | None:intergenic |
| AAATCCAATTAATGGTCCTA+AGG | 0.512590 | 2_2:-52440376 | None:intergenic |
| TCATAGGTTGAATTTCCAAA+AGG | 0.512621 | 2_2:+52440512 | Msa0256960:CDS |
| CATTAAAGATGTTGAAAGAG+AGG | 0.517722 | 2_2:+52440284 | Msa0256960:CDS |
| CAGATTATGAAAGCTGATCC+AGG | 0.521758 | 2_2:+52440669 | Msa0256960:CDS |
| TGTAAAGAAAGGTCCAATGA+AGG | 0.542642 | 2_2:+52440329 | Msa0256960:CDS |
| TCTCGAAGAGAAGTGGGAAT+GGG | 0.548515 | 2_2:-52438350 | None:intergenic |
| ATTAAAGATGTTGAAAGAGA+GGG | 0.555268 | 2_2:+52440285 | Msa0256960:CDS |
| ATTATTACAACTTAGGCATG+AGG | 0.559609 | 2_2:-52441136 | None:intergenic |
| CTTCTAAAGCCTGGACCTCA+AGG | 0.560362 | 2_2:+52438374 | Msa0256960:CDS |
| AACAGCAACATTGGCACCAT+AGG | 0.567015 | 2_2:-52440763 | None:intergenic |
| GCACACCTAAACAGCAACAT+TGG | 0.570853 | 2_2:-52440772 | None:intergenic |
| AGAAGTTCTCGAAGAGAAGT+GGG | 0.572137 | 2_2:-52438356 | None:intergenic |
| ATTTATGTTACACAATCCCA+TGG | 0.576823 | 2_2:-52440816 | None:intergenic |
| ATCATGGTTGGACACACCAT+GGG | 0.582351 | 2_2:+52440800 | Msa0256960:three_prime_UTR |
| CATGGTGTGTCCAACCATGA+TGG | 0.584358 | 2_2:-52440798 | None:intergenic |
| TGACAAACAGGTTTACTACC+TGG | 0.588938 | 2_2:-52440687 | None:intergenic |
| CATCATGGTTGGACACACCA+TGG | 0.594647 | 2_2:+52440799 | Msa0256960:three_prime_UTR |
| GGCATGAGGGTTAAATAACT+CGG | 0.598165 | 2_2:-52441122 | None:intergenic |
| TGTCATCAATTTCCATTGGG+AGG | 0.600962 | 2_2:-52440143 | None:intergenic |
| TAAAATTGTACAATAAGGCA+CGG | 0.619104 | 2_2:-52441001 | None:intergenic |
| TTATTACAACTTAGGCATGA+GGG | 0.619773 | 2_2:-52441135 | None:intergenic |
| GATGAGGTGTGTGTAAAGAA+AGG | 0.627222 | 2_2:+52440318 | Msa0256960:CDS |
| GTAAAGAAAGGTCCAATGAA+GGG | 0.630060 | 2_2:+52440330 | Msa0256960:CDS |
| TCCCATTCTTGCAATCAACA+AGG | 0.631111 | 2_2:-52437901 | None:intergenic |
| AACACCATAAGGTTGTGCAA+AGG | 0.645055 | 2_2:-52440244 | None:intergenic |
| TGAAATTGATGACCTCCCAA+TGG | 0.651240 | 2_2:+52440131 | Msa0256960:CDS |
| AGAGGGATATACTTATGATG+AGG | 0.666297 | 2_2:+52440302 | Msa0256960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATGTAATATTTTATAGTA+TGG | - | chr2_2:52438786-52438805 | None:intergenic | 10.0% |
| !! | AAAATTGTAAAAAAAAATTC+GGG | - | chr2_2:52439443-52439462 | None:intergenic | 10.0% |
| !! | TAAAAAACATAAAAAATTTC+GGG | - | chr2_2:52439514-52439533 | None:intergenic | 10.0% |
| !! | AAAATCTTAAAAAAAAATTC+GGG | - | chr2_2:52439602-52439621 | None:intergenic | 10.0% |
| !!! | AAATTAAAACTGAAATTTTT+CGG | - | chr2_2:52439629-52439648 | None:intergenic | 10.0% |
| !! | TTAAACAACAACTTAAAATA+TGG | + | chr2_2:52438056-52438075 | Msa0256960:intron | 15.0% |
| !! | AATTAGTACCTATATAAATT+AGG | + | chr2_2:52438471-52438490 | Msa0256960:intron | 15.0% |
| !! | AATTTATGTAAGATCTAAAA+AGG | + | chr2_2:52438509-52438528 | Msa0256960:intron | 15.0% |
| !!! | ATCTAAAAAGGTTAATTTTA+TGG | + | chr2_2:52438521-52438540 | Msa0256960:intron | 15.0% |
| !!! | TCTAAAAAGGTTAATTTTAT+GGG | + | chr2_2:52438522-52438541 | Msa0256960:intron | 15.0% |
| !! | TTATATTTATAGTACATAAC+AGG | + | chr2_2:52438611-52438630 | Msa0256960:intron | 15.0% |
| !! | ATAAAATATTACATTTGAAG+AGG | + | chr2_2:52438790-52438809 | Msa0256960:intron | 15.0% |
| !!! | ATAGAGATATTATGTTTTTA+TGG | + | chr2_2:52438874-52438893 | Msa0256960:intron | 15.0% |
| !!! | ATTTTTTCTTATTTTAATCG+TGG | - | chr2_2:52439092-52439111 | None:intergenic | 15.0% |
| !! | AAGAAAAAATAGATAAAAGT+TGG | + | chr2_2:52439102-52439121 | Msa0256960:intron | 15.0% |
| !! | TCATGTTATAATAATGAAAA+TGG | + | chr2_2:52440977-52440996 | Msa0256960:three_prime_UTR | 15.0% |
| !!! | GCAAATAAAGTATTATTTGT+GGG | + | chr2_2:52438078-52438097 | Msa0256960:intron | 20.0% |
| !!! | CAAATAAAGTATTATTTGTG+GGG | + | chr2_2:52438079-52438098 | Msa0256960:intron | 20.0% |
| !!! | AAATAAAGTATTATTTGTGG+GGG | + | chr2_2:52438080-52438099 | Msa0256960:intron | 20.0% |
| !! | AAAATAAAATAACAACCTTG+AGG | - | chr2_2:52438392-52438411 | None:intergenic | 20.0% |
| !! | ATCTCAATCCTAATTTATAT+AGG | - | chr2_2:52438482-52438501 | None:intergenic | 20.0% |
| !! | GTTTCACTCTATAAATAAAA+TGG | - | chr2_2:52438715-52438734 | None:intergenic | 20.0% |
| !!! | TCTATCAAGTAATTTTTTGT+TGG | - | chr2_2:52438859-52438878 | None:intergenic | 20.0% |
| !!! | TATGGTTAATCAAATTTTGT+TGG | + | chr2_2:52438892-52438911 | Msa0256960:intron | 20.0% |
| !! | TCAAATAAACGATCTATTTA+AGG | + | chr2_2:52439135-52439154 | Msa0256960:intron | 20.0% |
| !! | AACAAAAAAAAAATAAGCCA+GGG | - | chr2_2:52439386-52439405 | None:intergenic | 20.0% |
| !! | AAACAAAAAAAAAATAAGCC+AGG | - | chr2_2:52439387-52439406 | None:intergenic | 20.0% |
| !!! | CTGAAAAAACTGAAATTTTT+CGG | - | chr2_2:52439470-52439489 | None:intergenic | 20.0% |
| !! | AAGGAAAAAAAAAATAAGTC+AGG | + | chr2_2:52439745-52439764 | Msa0256960:intron | 20.0% |
| !! | AGGAAAAAAAAAATAAGTCA+GGG | + | chr2_2:52439746-52439765 | Msa0256960:intron | 20.0% |
| !!! | TTTATTGATAAAAGTGCTTA+GGG | - | chr2_2:52439948-52439967 | None:intergenic | 20.0% |
| !!! | ATTTATTGATAAAAGTGCTT+AGG | - | chr2_2:52439949-52439968 | None:intergenic | 20.0% |
| !! | ATAAGAGTCAAAATGAATTA+TGG | + | chr2_2:52440073-52440092 | Msa0256960:intron | 20.0% |
| !! | AGATAAAAATAAACACCATA+AGG | - | chr2_2:52440258-52440277 | None:intergenic | 20.0% |
| !!! | TTTTATTGTCATGAAATTCA+TGG | + | chr2_2:52440540-52440559 | Msa0256960:CDS | 20.0% |
| !!! | ACTTCTAAAATTGTACAATA+AGG | - | chr2_2:52441009-52441028 | None:intergenic | 20.0% |
| ! | GAACTGAAATGAAAATGATA+AGG | - | chr2_2:52437935-52437954 | None:intergenic | 25.0% |
| ! | TAAGTTTATAGTACATCAGT+TGG | - | chr2_2:52438039-52438058 | None:intergenic | 25.0% |
| !! | GGCAAATAAAGTATTATTTG+TGG | + | chr2_2:52438077-52438096 | Msa0256960:intron | 25.0% |
| ! | TATAAATAAAATGGTCTCTG+AGG | - | chr2_2:52438706-52438725 | None:intergenic | 25.0% |
| ! | TATAGAGTGAAACAATTCTA+AGG | + | chr2_2:52438722-52438741 | Msa0256960:intron | 25.0% |
| ! | ATAGAGTGAAACAATTCTAA+GGG | + | chr2_2:52438723-52438742 | Msa0256960:intron | 25.0% |
| !!! | GATCCTTTTAATTTAGATAG+AGG | - | chr2_2:52438749-52438768 | None:intergenic | 25.0% |
| ! | TTGTTAAGATGAAAGATGTT+TGG | - | chr2_2:52438818-52438837 | None:intergenic | 25.0% |
| !!! | CACTTTCTTTTTAGCAATAT+AGG | + | chr2_2:52439064-52439083 | Msa0256960:intron | 25.0% |
| ! | AATAGATCGTTTATTTGAGA+TGG | - | chr2_2:52439133-52439152 | None:intergenic | 25.0% |
| !!! | TCTTTGTTTTCCAAACATTA+AGG | + | chr2_2:52439160-52439179 | Msa0256960:intron | 25.0% |
| !! | TCAAGTGATTAACTTTTACA+GGG | - | chr2_2:52439845-52439864 | None:intergenic | 25.0% |
| !! | TTCAAGTGATTAACTTTTAC+AGG | - | chr2_2:52439844-52439863 | None:intergenic | 25.0% |
| ! | ACAAAAAAAAAATAAGCCAG+GGG | - | chr2_2:52439385-52439404 | None:intergenic | 25.0% |
| ! | AAAAAATTCGGGAAAAAACT+GGG | - | chr2_2:52439591-52439610 | None:intergenic | 25.0% |
| ! | AAAAAAATTCGGGAAAAAAC+TGG | - | chr2_2:52439592-52439611 | None:intergenic | 25.0% |
| ! | GGAAAAAAAAAATAAGTCAG+GGG | + | chr2_2:52439747-52439766 | Msa0256960:intron | 25.0% |
| !! | TTCAAGTGATTAACTTTTAC+AGG | + | chr2_2:52439844-52439863 | Msa0256960:intron | 25.0% |
| !! | TCAAGTGATTAACTTTTACA+GGG | + | chr2_2:52439845-52439864 | Msa0256960:intron | 25.0% |
| !!! | TTTTTAATTTACTACCATCG+TGG | + | chr2_2:52440014-52440033 | Msa0256960:intron | 25.0% |
| ! | AAACCTATTTATTATGACAC+AGG | + | chr2_2:52440105-52440124 | Msa0256960:intron | 25.0% |
| ! | ATTAAAGATGTTGAAAGAGA+GGG | + | chr2_2:52440285-52440304 | Msa0256960:CDS | 25.0% |
| !! | AAATTTTGTGCAAAATCCTT+AGG | + | chr2_2:52440360-52440379 | Msa0256960:CDS | 25.0% |
| ! | GAAATTGCAAATCCAATTAA+TGG | - | chr2_2:52440387-52440406 | None:intergenic | 25.0% |
| !! | GACAATAAAATACAACCTTT+TGG | - | chr2_2:52440530-52440549 | None:intergenic | 25.0% |
| !!! | ATAAAATAGCCTTATTTCCT+AGG | - | chr2_2:52440716-52440735 | None:intergenic | 25.0% |
| !!! | TAGGAAATAAGGCTATTTTA+TGG | + | chr2_2:52440715-52440734 | Msa0256960:CDS | 25.0% |
| !!! | AGGAAATAAGGCTATTTTAT+GGG | + | chr2_2:52440716-52440735 | Msa0256960:CDS | 25.0% |
| !! | ATTTTATGGGTACCTAATTT+AGG | + | chr2_2:52440729-52440748 | Msa0256960:CDS | 25.0% |
| ! | TAAAATTGTACAATAAGGCA+CGG | - | chr2_2:52441004-52441023 | None:intergenic | 25.0% |
| ! | TTGAATTAGTTAATGAGTTG+AGG | - | chr2_2:52441082-52441101 | None:intergenic | 25.0% |
| ! | AAGTGCAATTATTACAACTT+AGG | - | chr2_2:52441146-52441165 | None:intergenic | 25.0% |
| !! | AGAATTCATAAGTGTTGAGA+GGG | - | chr2_2:52438003-52438022 | None:intergenic | 30.0% |
| !! | AAGAATTCATAAGTGTTGAG+AGG | - | chr2_2:52438004-52438023 | None:intergenic | 30.0% |
| TCTCAACACTTATGAATTCT+TGG | + | chr2_2:52438003-52438022 | Msa0256960:intron | 30.0% | |
| !!! | ACTAATTTTTTAGTCTCTGC+AGG | - | chr2_2:52438458-52438477 | None:intergenic | 30.0% |
| GTTACCAATAGAATGAATGT+TGG | - | chr2_2:52438638-52438657 | None:intergenic | 30.0% | |
| TCTTATCCTTTATTGCAGTA+TGG | + | chr2_2:52438672-52438691 | Msa0256960:intron | 30.0% | |
| ACGACTATAACCTTAATGTT+TGG | - | chr2_2:52439173-52439192 | None:intergenic | 30.0% | |
| TTATAGTCGTAATAAGCACT+TGG | + | chr2_2:52439183-52439202 | Msa0256960:intron | 30.0% | |
| TATAGTCGTAATAAGCACTT+GGG | + | chr2_2:52439184-52439203 | Msa0256960:intron | 30.0% | |
| TCAAATGGCCTATAATTACA+GGG | - | chr2_2:52439905-52439924 | None:intergenic | 30.0% | |
| TTCAAATGGCCTATAATTAC+AGG | - | chr2_2:52439904-52439923 | None:intergenic | 30.0% | |
| ! | AGCTGGGAAAAAAATTTTGA+AGG | - | chr2_2:52439416-52439435 | None:intergenic | 30.0% |
| AAAAAATTCGGGAAAAAGCT+GGG | - | chr2_2:52439432-52439451 | None:intergenic | 30.0% | |
| AAAAAAATTCGGGAAAAAGC+TGG | - | chr2_2:52439433-52439452 | None:intergenic | 30.0% | |
| TTCAAATGGCCTATAATTAC+AGG | + | chr2_2:52439904-52439923 | Msa0256960:intron | 30.0% | |
| TCAAATGGCCTATAATTACA+GGG | + | chr2_2:52439905-52439924 | Msa0256960:intron | 30.0% | |
| ! | CTCTTATATCATGCTAGTTT+CGG | - | chr2_2:52440060-52440079 | None:intergenic | 30.0% |
| ACACCTGTGTCATAATAAAT+AGG | - | chr2_2:52440111-52440130 | None:intergenic | 30.0% | |
| !! | GTTGATAGAAAAAGGCTTTT+GGG | - | chr2_2:52440176-52440195 | None:intergenic | 30.0% |
| !! | TGTTGATAGAAAAAGGCTTT+TGG | - | chr2_2:52440177-52440196 | None:intergenic | 30.0% |
| ! | AAGCTCATGTTGATAGAAAA+AGG | - | chr2_2:52440184-52440203 | None:intergenic | 30.0% |
| CATTAAAGATGTTGAAAGAG+AGG | + | chr2_2:52440284-52440303 | Msa0256960:CDS | 30.0% | |
| ! | AATTTTTCTTCTCCCTTCAT+TGG | - | chr2_2:52440345-52440364 | None:intergenic | 30.0% |
| AAATCCTTAGGACCATTAAT+TGG | + | chr2_2:52440372-52440391 | Msa0256960:CDS | 30.0% | |
| AAATCCAATTAATGGTCCTA+AGG | - | chr2_2:52440379-52440398 | None:intergenic | 30.0% | |
| GGATTTGCAATTTCAAAACT+TGG | + | chr2_2:52440393-52440412 | Msa0256960:CDS | 30.0% | |
| TTGTTCATGCTTATCAATGA+AGG | - | chr2_2:52440445-52440464 | None:intergenic | 30.0% | |
| ! | TCATAGGTTGAATTTCCAAA+AGG | + | chr2_2:52440512-52440531 | Msa0256960:CDS | 30.0% |
| ! | TTGTCATTTCCTAGGAAATA+AGG | + | chr2_2:52440704-52440723 | Msa0256960:CDS | 30.0% |
| ATTTATGTTACACAATCCCA+TGG | - | chr2_2:52440819-52440838 | None:intergenic | 30.0% | |
| TTATTACAACTTAGGCATGA+GGG | - | chr2_2:52441138-52441157 | None:intergenic | 30.0% | |
| ATTATTACAACTTAGGCATG+AGG | - | chr2_2:52441139-52441158 | None:intergenic | 30.0% | |
| ! | TTCCTTGTTGATTGCAAGAA+TGG | + | chr2_2:52437899-52437918 | Msa0256960:exon | 35.0% |
| ! | TCCTTGTTGATTGCAAGAAT+GGG | + | chr2_2:52437900-52437919 | Msa0256960:exon | 35.0% |
| ! | AAAGTATTATTTGTGGGGGT+TGG | + | chr2_2:52438084-52438103 | Msa0256960:intron | 35.0% |
| ACTGCCTGAAGAAGAATATT+GGG | + | chr2_2:52438307-52438326 | Msa0256960:CDS | 35.0% | |
| AAGAATATTGGGAAGCTGTT+TGG | + | chr2_2:52438318-52438337 | Msa0256960:CDS | 35.0% | |
| AGGTCCAACATTCATTCTAT+TGG | + | chr2_2:52438631-52438650 | Msa0256960:intron | 35.0% | |
| GGGCCTCTATCTAAATTAAA+AGG | + | chr2_2:52438743-52438762 | Msa0256960:intron | 35.0% | |
| TAGTATGGTGTTCTAATTGC+AGG | - | chr2_2:52438771-52438790 | None:intergenic | 35.0% | |
| GGGGAATCATTCATTTAACA+AGG | + | chr2_2:52438966-52438985 | Msa0256960:intron | 35.0% | |
| !! | ACCCATTTTTCTTCCTCTAA+CGG | - | chr2_2:52439012-52439031 | None:intergenic | 35.0% |
| ! | GATCGTTTATTTGAGATGGT+GGG | - | chr2_2:52439129-52439148 | None:intergenic | 35.0% |
| ! | AGATCGTTTATTTGAGATGG+TGG | - | chr2_2:52439130-52439149 | None:intergenic | 35.0% |
| ! | CTTTTCGTCCCTGTAATTAT+AGG | + | chr2_2:52439216-52439235 | Msa0256960:intron | 35.0% |
| ! | AACTTTTACAGGGACGAAAT+GGG | - | chr2_2:52439855-52439874 | None:intergenic | 35.0% |
| ! | TAACTTTTACAGGGACGAAA+TGG | - | chr2_2:52439854-52439873 | None:intergenic | 35.0% |
| !!! | ATTTTGGTAATTTGCTGACG+TGG | - | chr2_2:52439792-52439811 | None:intergenic | 35.0% |
| ACGTCAGCAAATTACCAAAA+TGG | + | chr2_2:52439339-52439358 | Msa0256960:intron | 35.0% | |
| AGCAAATTACCAAAATGGCA+TGG | + | chr2_2:52439344-52439363 | Msa0256960:intron | 35.0% | |
| GCAAATTACCAAAATGGCAT+GGG | + | chr2_2:52439345-52439364 | Msa0256960:intron | 35.0% | |
| GCAAATTACCAAAATGGCAT+GGG | - | chr2_2:52439345-52439364 | None:intergenic | 35.0% | |
| AGCAAATTACCAAAATGGCA+TGG | - | chr2_2:52439344-52439363 | None:intergenic | 35.0% | |
| ACGTCAGCAAATTACCAAAA+TGG | - | chr2_2:52439339-52439358 | None:intergenic | 35.0% | |
| !!! | ATTTTGGTAATTTGCTGACG+TGG | + | chr2_2:52439792-52439811 | Msa0256960:intron | 35.0% |
| ! | TAACTTTTACAGGGACGAAA+TGG | + | chr2_2:52439854-52439873 | Msa0256960:intron | 35.0% |
| ! | AACTTTTACAGGGACGAAAT+GGG | + | chr2_2:52439855-52439874 | Msa0256960:intron | 35.0% |
| ! | CTTTTCGTCCCTGTAATTAT+AGG | - | chr2_2:52439216-52439235 | None:intergenic | 35.0% |
| GTGTGTCATCAATTTCCATT+GGG | - | chr2_2:52440149-52440168 | None:intergenic | 35.0% | |
| TGTGTGTCATCAATTTCCAT+TGG | - | chr2_2:52440150-52440169 | None:intergenic | 35.0% | |
| ! | TATCAACATGAGCTTTATCC+AGG | + | chr2_2:52440189-52440208 | Msa0256960:CDS | 35.0% |
| AGAGGGATATACTTATGATG+AGG | + | chr2_2:52440302-52440321 | Msa0256960:CDS | 35.0% | |
| TGTAAAGAAAGGTCCAATGA+AGG | + | chr2_2:52440329-52440348 | Msa0256960:CDS | 35.0% | |
| GTAAAGAAAGGTCCAATGAA+GGG | + | chr2_2:52440330-52440349 | Msa0256960:CDS | 35.0% | |
| ATAGAGTCAGTCCAAAATCT+TGG | + | chr2_2:52440471-52440490 | Msa0256960:CDS | 35.0% | |
| ! | TCATGGAACAACAGCTTTTA+TGG | + | chr2_2:52440557-52440576 | Msa0256960:CDS | 35.0% |
| ! | AACAGCTTTTATGGTTCCAT+TGG | + | chr2_2:52440566-52440585 | Msa0256960:CDS | 35.0% |
| ! | AAACCTGTTTGTCATTTCCT+AGG | + | chr2_2:52440696-52440715 | Msa0256960:CDS | 35.0% |
| TTTCCTAGGAAATGACAAAC+AGG | - | chr2_2:52440702-52440721 | None:intergenic | 35.0% | |
| ! | ATGGGTACCTAATTTAGGTT+TGG | + | chr2_2:52440734-52440753 | Msa0256960:CDS | 35.0% |
| GCATTGTCCAAACCTAAATT+AGG | - | chr2_2:52440744-52440763 | None:intergenic | 35.0% | |
| TAAGTCCAATTCTATAGCCT+TGG | - | chr2_2:52440885-52440904 | None:intergenic | 35.0% | |
| TCCCATTCTTGCAATCAACA+AGG | - | chr2_2:52437904-52437923 | None:intergenic | 40.0% | |
| CACTGCCTGAAGAAGAATAT+TGG | + | chr2_2:52438306-52438325 | Msa0256960:CDS | 40.0% | |
| GCTTCCCAATATTCTTCTTC+AGG | - | chr2_2:52438314-52438333 | None:intergenic | 40.0% | |
| AGAAGTTCTCGAAGAGAAGT+GGG | - | chr2_2:52438359-52438378 | None:intergenic | 40.0% | |
| TAGAAGTTCTCGAAGAGAAG+TGG | - | chr2_2:52438360-52438379 | None:intergenic | 40.0% | |
| AAATAACAACCTTGAGGTCC+AGG | - | chr2_2:52438386-52438405 | None:intergenic | 40.0% | |
| ! | ACTGTTAGAGCATCTTCAGT+GGG | + | chr2_2:52438946-52438965 | Msa0256960:intron | 40.0% |
| !! | CCATTTTTCTTCCTCTAACG+GGG | - | chr2_2:52439010-52439029 | None:intergenic | 40.0% |
| !! | CCCATTTTTCTTCCTCTAAC+GGG | - | chr2_2:52439011-52439030 | None:intergenic | 40.0% |
| CCCGTTAGAGGAAGAAAAAT+GGG | + | chr2_2:52439008-52439027 | Msa0256960:intron | 40.0% | |
| CTCAGGGACGAAAATTCAAA+TGG | - | chr2_2:52439890-52439909 | None:intergenic | 40.0% | |
| TGACGTGGCAGTGATTAAAA+GGG | - | chr2_2:52439807-52439826 | None:intergenic | 40.0% | |
| !! | CATCATTTCCCATGCCATTT+TGG | + | chr2_2:52439776-52439795 | Msa0256960:intron | 40.0% |
| TGACGTGGCAGTGATTAAAA+GGG | + | chr2_2:52439807-52439826 | Msa0256960:intron | 40.0% | |
| CTCAGGGACGAAAATTCAAA+TGG | + | chr2_2:52439890-52439909 | Msa0256960:intron | 40.0% | |
| ! | TGAAATTGATGACCTCCCAA+TGG | + | chr2_2:52440131-52440150 | Msa0256960:CDS | 40.0% |
| TGTCATCAATTTCCATTGGG+AGG | - | chr2_2:52440146-52440165 | None:intergenic | 40.0% | |
| !!! | TGCACGTTCATTGATTTTCC+TGG | - | chr2_2:52440210-52440229 | None:intergenic | 40.0% |
| ACACCATAAGGTTGTGCAAA+GGG | - | chr2_2:52440246-52440265 | None:intergenic | 40.0% | |
| AACACCATAAGGTTGTGCAA+AGG | - | chr2_2:52440247-52440266 | None:intergenic | 40.0% | |
| GATGAGGTGTGTGTAAAGAA+AGG | + | chr2_2:52440318-52440337 | Msa0256960:CDS | 40.0% | |
| ! | CTGCTTTCTCTCCAAGATTT+TGG | - | chr2_2:52440485-52440504 | None:intergenic | 40.0% |
| AGAAAGCAGTGATGTGTCAT+AGG | + | chr2_2:52440496-52440515 | Msa0256960:CDS | 40.0% | |
| ! | AGCTTTTATGGTTCCATTGG+TGG | + | chr2_2:52440569-52440588 | Msa0256960:CDS | 40.0% |
| GTTTGTCATGCTGATACTTC+AGG | + | chr2_2:52440624-52440643 | Msa0256960:CDS | 40.0% | |
| CAGATTATGAAAGCTGATCC+AGG | + | chr2_2:52440669-52440688 | Msa0256960:CDS | 40.0% | |
| TGACAAACAGGTTTACTACC+TGG | - | chr2_2:52440690-52440709 | None:intergenic | 40.0% | |
| TTAGGTTTGGACAATGCCTA+TGG | + | chr2_2:52440747-52440766 | Msa0256960:CDS | 40.0% | |
| ! | GTTTGTACCTTTTGTAGCCA+AGG | + | chr2_2:52440865-52440884 | Msa0256960:three_prime_UTR | 40.0% |
| ! | TCTATAGCCTTGGCTACAAA+AGG | - | chr2_2:52440875-52440894 | None:intergenic | 40.0% |
| TGTAGCCAAGGCTATAGAAT+TGG | + | chr2_2:52440877-52440896 | Msa0256960:three_prime_UTR | 40.0% | |
| GTTGTACTTGTACCCTAAAG+AGG | + | chr2_2:52440923-52440942 | Msa0256960:three_prime_UTR | 40.0% | |
| GGCATGAGGGTTAAATAACT+CGG | - | chr2_2:52441125-52441144 | None:intergenic | 40.0% | |
| !! | CATAAGTGTTGAGAGGGTCA+TGG | - | chr2_2:52437997-52438016 | None:intergenic | 45.0% |
| !! | GAAGTGGGAATGGGAGTATT+GGG | - | chr2_2:52438344-52438363 | None:intergenic | 45.0% |
| ! | AGAAGTGGGAATGGGAGTAT+TGG | - | chr2_2:52438345-52438364 | None:intergenic | 45.0% |
| TCTCGAAGAGAAGTGGGAAT+GGG | - | chr2_2:52438353-52438372 | None:intergenic | 45.0% | |
| TTCTCGAAGAGAAGTGGGAA+TGG | - | chr2_2:52438354-52438373 | None:intergenic | 45.0% | |
| !! | CTTCGAGAACTTCTAAAGCC+TGG | + | chr2_2:52438365-52438384 | Msa0256960:CDS | 45.0% |
| GCAGCACCATACTGCAATAA+AGG | - | chr2_2:52438681-52438700 | None:intergenic | 45.0% | |
| ! | GACTGTTAGAGCATCTTCAG+TGG | + | chr2_2:52438945-52438964 | Msa0256960:intron | 45.0% |
| ! | CTGTTAGAGCATCTTCAGTG+GGG | + | chr2_2:52438947-52438966 | Msa0256960:intron | 45.0% |
| CCCCGTTAGAGGAAGAAAAA+TGG | + | chr2_2:52439007-52439026 | Msa0256960:intron | 45.0% | |
| ! | TGGGAGGATTAGTAAGCTCA+GGG | - | chr2_2:52439874-52439893 | None:intergenic | 45.0% |
| ! | ATGGGAGGATTAGTAAGCTC+AGG | - | chr2_2:52439873-52439892 | None:intergenic | 45.0% |
| ! | TTTTACAGGGACGAAATGGG+AGG | - | chr2_2:52439858-52439877 | None:intergenic | 45.0% |
| GACGTGGCAGTGATTAAAAG+GGG | - | chr2_2:52439808-52439827 | None:intergenic | 45.0% | |
| CTGACGTGGCAGTGATTAAA+AGG | - | chr2_2:52439806-52439825 | None:intergenic | 45.0% | |
| !! | CGTCATTTCCCATGCCATTT+TGG | - | chr2_2:52439356-52439375 | None:intergenic | 45.0% |
| GGAAATGACGAAAATACCCC+TGG | + | chr2_2:52439366-52439385 | Msa0256960:intron | 45.0% | |
| CTGACGTGGCAGTGATTAAA+AGG | + | chr2_2:52439806-52439825 | Msa0256960:intron | 45.0% | |
| GACGTGGCAGTGATTAAAAG+GGG | + | chr2_2:52439808-52439827 | Msa0256960:intron | 45.0% | |
| ! | TTTTACAGGGACGAAATGGG+AGG | + | chr2_2:52439858-52439877 | Msa0256960:intron | 45.0% |
| ! | ATGGGAGGATTAGTAAGCTC+AGG | + | chr2_2:52439873-52439892 | Msa0256960:intron | 45.0% |
| ! | TGGGAGGATTAGTAAGCTCA+GGG | + | chr2_2:52439874-52439893 | Msa0256960:intron | 45.0% |
| ! | GTTAGTTAGAGCATCCACGA+TGG | - | chr2_2:52440031-52440050 | None:intergenic | 45.0% |
| ! | GTTCCATTGGTGGCAAATGA+TGG | + | chr2_2:52440579-52440598 | Msa0256960:CDS | 45.0% |
| GTTCCATCATTTGCCACCAA+TGG | - | chr2_2:52440585-52440604 | None:intergenic | 45.0% | |
| AACAGCAACATTGGCACCAT+AGG | - | chr2_2:52440766-52440785 | None:intergenic | 45.0% | |
| !! | TGGTGCCAATGTTGCTGTTT+AGG | + | chr2_2:52440767-52440786 | Msa0256960:CDS | 45.0% |
| GCACACCTAAACAGCAACAT+TGG | - | chr2_2:52440775-52440794 | None:intergenic | 45.0% | |
| TTTAGGTGTGCTCTCCATCA+TGG | + | chr2_2:52440784-52440803 | Msa0256960:exon | 45.0% | |
| ATCATGGTTGGACACACCAT+GGG | + | chr2_2:52440800-52440819 | Msa0256960:three_prime_UTR | 45.0% | |
| TGCAAGATCGTGCCTCTTTA+GGG | - | chr2_2:52440938-52440957 | None:intergenic | 45.0% | |
| ATGCAAGATCGTGCCTCTTT+AGG | - | chr2_2:52440939-52440958 | None:intergenic | 45.0% | |
| !! | AAAAATTGTAAAAAAAAATT+CGG | - | chr2_2:52439444-52439463 | None:intergenic | 5.0% |
| !! | TTAAAAAACATAAAAAATTT+CGG | - | chr2_2:52439515-52439534 | None:intergenic | 5.0% |
| !! | AAAAATCTTAAAAAAAAATT+CGG | - | chr2_2:52439603-52439622 | None:intergenic | 5.0% |
| !! | TTAAAAATCATAAAAAATTT+CGG | - | chr2_2:52439665-52439684 | None:intergenic | 5.0% |
| !!! | AAATTTTGAAATTTTTTTTA+AGG | + | chr2_2:52439726-52439745 | Msa0256960:intron | 5.0% |
| GAGAGGGTCATGGAGATGAA+AGG | - | chr2_2:52437987-52438006 | None:intergenic | 50.0% | |
| CTTCTTCAGGCAGTGATGCA+TGG | - | chr2_2:52438301-52438320 | None:intergenic | 50.0% | |
| !! | CTTCTAAAGCCTGGACCTCA+AGG | + | chr2_2:52438374-52438393 | Msa0256960:CDS | 50.0% |
| CCTCTAACGGGGTTCTTAAC+AGG | - | chr2_2:52438999-52439018 | None:intergenic | 50.0% | |
| CCTGTTAAGAACCCCGTTAG+AGG | + | chr2_2:52438996-52439015 | Msa0256960:intron | 50.0% | |
| GCAGTGATTAAAAGGGGCGA+GGG | - | chr2_2:52439814-52439833 | None:intergenic | 50.0% | |
| GCAGTGATTAAAAGGGGCGA+GGG | + | chr2_2:52439814-52439833 | Msa0256960:intron | 50.0% | |
| CGTCCCTTTGCACAACCTTA+TGG | + | chr2_2:52440240-52440259 | Msa0256960:CDS | 50.0% | |
| CATGGTGTGTCCAACCATGA+TGG | - | chr2_2:52440801-52440820 | None:intergenic | 50.0% | |
| CATCATGGTTGGACACACCA+TGG | + | chr2_2:52440799-52440818 | Msa0256960:three_prime_UTR | 50.0% | |
| GATGTGCAGCTTGCACTTGC+AGG | + | chr2_2:52438269-52438288 | Msa0256960:intron | 55.0% | |
| GGCAGTGATTAAAAGGGGCG+AGG | - | chr2_2:52439813-52439832 | None:intergenic | 55.0% | |
| GGCAGTGATTAAAAGGGGCG+AGG | + | chr2_2:52439813-52439832 | Msa0256960:intron | 55.0% | |
| GGTGTGCTCTCCATCATGGT+TGG | + | chr2_2:52440788-52440807 | Msa0256960:exon | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 52437872 | 52441186 | 52437872 | ID=Msa0256960;Name=Msa0256960 |
| chr2_2 | mRNA | 52437872 | 52441186 | 52437872 | ID=Msa0256960-mRNA-1;Parent=Msa0256960;Name=Msa0256960-mRNA-1;_AED=0.01;_eAED=0.01;_QI=46|1|1|1|1|1|3|398|273 |
| chr2_2 | exon | 52437872 | 52437959 | 52437872 | ID=Msa0256960-mRNA-1:exon:15753;Parent=Msa0256960-mRNA-1 |
| chr2_2 | exon | 52438278 | 52438395 | 52438278 | ID=Msa0256960-mRNA-1:exon:15754;Parent=Msa0256960-mRNA-1 |
| chr2_2 | exon | 52440127 | 52441186 | 52440127 | ID=Msa0256960-mRNA-1:exon:15755;Parent=Msa0256960-mRNA-1 |
| chr2_2 | five_prime_UTR | 52437872 | 52437917 | 52437872 | ID=Msa0256960-mRNA-1:five_prime_utr;Parent=Msa0256960-mRNA-1 |
| chr2_2 | CDS | 52437918 | 52437959 | 52437918 | ID=Msa0256960-mRNA-1:cds;Parent=Msa0256960-mRNA-1 |
| chr2_2 | CDS | 52438278 | 52438395 | 52438278 | ID=Msa0256960-mRNA-1:cds;Parent=Msa0256960-mRNA-1 |
| chr2_2 | CDS | 52440127 | 52440788 | 52440127 | ID=Msa0256960-mRNA-1:cds;Parent=Msa0256960-mRNA-1 |
| chr2_2 | three_prime_UTR | 52440789 | 52441186 | 52440789 | ID=Msa0256960-mRNA-1:three_prime_utr;Parent=Msa0256960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
