Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334650 | GAU26334.1 | 89.744 | 273 | 28 | 0 | 1 | 273 | 1 | 273 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334650 | sp|Q43675|USP_VICFA | 41.091 | 275 | 141 | 9 | 1 | 265 | 1 | 264 | 4.72e-67 | 212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0208400 | Msa0334650 | 0.817359 | 3.434930e-52 | -8.615850e-47 |
| Msa0208560 | Msa0334650 | 0.817162 | 3.804447e-52 | -8.615850e-47 |
| Msa0217080 | Msa0334650 | 0.901483 | 2.560728e-78 | -8.615850e-47 |
| Msa0256960 | Msa0334650 | 0.976345 | 1.195129e-141 | -8.615850e-47 |
| Msa0296270 | Msa0334650 | 0.910139 | 2.616304e-82 | -8.615850e-47 |
| Msa0296280 | Msa0334650 | 0.916311 | 2.075300e-85 | -8.615850e-47 |
| Msa0334650 | Msa0343200 | 0.805702 | 1.174832e-49 | -8.615850e-47 |
| Msa0334650 | Msa0365360 | 0.805049 | 1.610497e-49 | -8.615850e-47 |
| Msa0334650 | Msa0416800 | 0.803355 | 3.627221e-49 | -8.615850e-47 |
| Msa0334650 | Msa0498920 | 0.822154 | 2.757160e-53 | -8.615850e-47 |
| Msa0334650 | Msa0548720 | 0.826445 | 2.702561e-54 | -8.615850e-47 |
| Msa0334650 | Msa0626230 | 0.807893 | 4.047064e-50 | -8.615850e-47 |
| Msa0334650 | Msa0642710 | 0.810330 | 1.216434e-50 | -8.615850e-47 |
| Msa0334650 | Msa0645460 | 0.800545 | 1.370469e-48 | -8.615850e-47 |
| Msa0334650 | Msa0739410 | 0.813925 | 1.999310e-51 | -8.615850e-47 |
| Msa0334650 | Msa0880080 | 0.808279 | 3.349339e-50 | -8.615850e-47 |
| Msa0334650 | Msa0891010 | 0.842774 | 2.105934e-58 | -8.615850e-47 |
| Msa0334650 | Msa0990920 | 0.846955 | 1.569235e-59 | -8.615850e-47 |
| Msa0334650 | Msa1008490 | 0.812903 | 3.354580e-51 | -8.615850e-47 |
| Msa0334650 | Msa1018720 | 0.807164 | 5.778161e-50 | -8.615850e-47 |
| Msa0334650 | Msa1025770 | 0.800539 | 1.374533e-48 | -8.615850e-47 |
| Msa0334650 | Msa1044450 | 0.802552 | 5.313532e-49 | -8.615850e-47 |
| Msa0334650 | Msa1099030 | 0.807826 | 4.181518e-50 | -8.615850e-47 |
| Msa0334650 | Msa1101620 | 0.827320 | 1.669716e-54 | -8.615850e-47 |
| Msa0334650 | Msa1125040 | 0.822437 | 2.370489e-53 | -8.615850e-47 |
| Msa0334650 | Msa1153170 | 0.813264 | 2.795698e-51 | -8.615850e-47 |
| Msa0334650 | Msa1201990 | 0.817826 | 2.695907e-52 | -8.615850e-47 |
| Msa0334650 | Msa1329990 | 0.823825 | 1.124417e-53 | -8.615850e-47 |
| Msa0334650 | Msa1423080 | 0.800580 | 1.348207e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334650 | MtrunA17_Chr2g0318901 | 87.546 | 273 | 34 | 0 | 1 | 273 | 1 | 273 | 0.0 | 513 |
| Msa0334650 | MtrunA17_Chr2g0318871 | 85.348 | 273 | 40 | 0 | 1 | 273 | 1 | 273 | 0.0 | 498 |
| Msa0334650 | MtrunA17_Chr2g0318931 | 66.171 | 269 | 82 | 5 | 1 | 261 | 5 | 272 | 1.61e-127 | 363 |
| Msa0334650 | MtrunA17_Chr8g0355861 | 43.657 | 268 | 136 | 7 | 1 | 260 | 1 | 261 | 7.80e-75 | 229 |
| Msa0334650 | MtrunA17_Chr8g0355321 | 37.540 | 309 | 129 | 6 | 10 | 260 | 1 | 303 | 3.55e-72 | 223 |
| Msa0334650 | MtrunA17_Chr1g0168781 | 40.809 | 272 | 145 | 7 | 1 | 264 | 1 | 264 | 3.19e-70 | 217 |
| Msa0334650 | MtrunA17_Chr8g0355871 | 45.918 | 196 | 97 | 3 | 71 | 259 | 29 | 222 | 1.29e-59 | 189 |
| Msa0334650 | MtrunA17_Chr8g0355841 | 52.532 | 158 | 74 | 1 | 111 | 268 | 362 | 518 | 1.51e-57 | 192 |
| Msa0334650 | MtrunA17_Chr8g0355311 | 51.613 | 155 | 74 | 1 | 111 | 265 | 43 | 196 | 2.02e-56 | 180 |
| Msa0334650 | MtrunA17_Chr8g0355331 | 51.449 | 138 | 67 | 0 | 129 | 266 | 291 | 428 | 4.15e-53 | 178 |
| Msa0334650 | MtrunA17_Chr8g0355831 | 59.848 | 132 | 53 | 0 | 129 | 260 | 221 | 352 | 8.58e-51 | 170 |
| Msa0334650 | MtrunA17_Chr1g0147261 | 33.663 | 303 | 149 | 12 | 1 | 257 | 1 | 297 | 5.23e-46 | 156 |
| Msa0334650 | MtrunA17_Chr3g0139431 | 30.408 | 319 | 155 | 12 | 6 | 259 | 5 | 321 | 1.27e-42 | 148 |
| Msa0334650 | MtrunA17_Chr1g0147311 | 30.183 | 328 | 152 | 10 | 5 | 258 | 30 | 354 | 2.48e-42 | 148 |
| Msa0334650 | MtrunA17_Chr1g0147331 | 29.938 | 324 | 153 | 10 | 5 | 258 | 4 | 323 | 1.29e-41 | 145 |
| Msa0334650 | MtrunA17_Chr1g0146631 | 29.630 | 324 | 154 | 11 | 5 | 258 | 4 | 323 | 1.61e-40 | 142 |
| Msa0334650 | MtrunA17_Chr1g0147241 | 30.351 | 313 | 159 | 11 | 1 | 257 | 1 | 310 | 3.72e-40 | 141 |
| Msa0334650 | MtrunA17_Chr1g0147301 | 33.047 | 233 | 122 | 9 | 57 | 258 | 54 | 283 | 2.02e-34 | 125 |
| Msa0334650 | MtrunA17_Chr1g0147271 | 34.579 | 214 | 111 | 7 | 73 | 258 | 171 | 383 | 6.81e-34 | 126 |
| Msa0334650 | MtrunA17_Chr1g0147291 | 32.895 | 228 | 125 | 9 | 57 | 258 | 40 | 265 | 1.11e-33 | 123 |
| Msa0334650 | MtrunA17_Chr1g0147321 | 33.333 | 222 | 120 | 9 | 62 | 257 | 16 | 235 | 4.69e-33 | 121 |
| Msa0334650 | MtrunA17_Chr1g0147251 | 30.396 | 227 | 125 | 6 | 58 | 257 | 20 | 240 | 4.58e-31 | 115 |
| Msa0334650 | MtrunA17_Chr3g0144421 | 29.954 | 217 | 123 | 7 | 72 | 259 | 86 | 302 | 1.77e-21 | 91.7 |
| Msa0334650 | MtrunA17_Chr4g0034821 | 30.493 | 223 | 119 | 10 | 72 | 261 | 74 | 293 | 8.10e-20 | 87.0 |
| Msa0334650 | MtrunA17_Chr3g0138231 | 32.877 | 146 | 88 | 4 | 126 | 261 | 123 | 268 | 7.24e-18 | 81.3 |
| Msa0334650 | MtrunA17_Chr3g0144391 | 30.085 | 236 | 121 | 10 | 60 | 259 | 278 | 505 | 1.03e-17 | 82.4 |
| Msa0334650 | MtrunA17_Chr3g0144411 | 30.493 | 223 | 112 | 9 | 72 | 259 | 324 | 538 | 1.76e-17 | 82.0 |
| Msa0334650 | MtrunA17_Chr3g0144451 | 34.247 | 146 | 86 | 5 | 126 | 261 | 132 | 277 | 6.46e-17 | 78.6 |
| Msa0334650 | MtrunA17_Chr4g0034451 | 33.562 | 146 | 85 | 7 | 126 | 259 | 381 | 526 | 1.11e-14 | 73.6 |
| Msa0334650 | MtrunA17_Chr4g0034691 | 32.414 | 145 | 86 | 7 | 127 | 259 | 564 | 708 | 2.54e-12 | 66.6 |
| Msa0334650 | MtrunA17_Chr4g0076231 | 27.660 | 141 | 93 | 4 | 126 | 257 | 16 | 156 | 3.25e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334650 | AT5G25610.1 | 33.036 | 224 | 121 | 8 | 63 | 257 | 166 | 389 | 9.68e-31 | 118 |
| Msa0334650 | AT1G49320.1 | 34.694 | 147 | 81 | 5 | 127 | 258 | 132 | 278 | 3.82e-16 | 77.0 |
Find 76 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTTCTCTCCAAGATTT+TGG | 0.104089 | 2_4:-53235800 | None:intergenic |
| ATGCAAGATCGTGCCTCTTT+AGG | 0.181649 | 2_4:-53236254 | None:intergenic |
| GAAATTGCAAATCCAATTAA+TGG | 0.208388 | 2_4:-53235702 | None:intergenic |
| AAATCCTTAGGACCATTAAT+TGG | 0.239448 | 2_4:+53235690 | Msa0334650:CDS |
| TCATGTTATAATAATGAAAA+TGG | 0.255013 | 2_4:+53236295 | Msa0334650:three_prime_UTR |
| GACAATAAAATACAACCTTT+TGG | 0.266567 | 2_4:-53235845 | None:intergenic |
| TTGTCATTTCCTAGGAAATA+AGG | 0.268344 | 2_4:+53236022 | Msa0334650:CDS |
| TGCAAGATCGTGCCTCTTTA+GGG | 0.269122 | 2_4:-53236253 | None:intergenic |
| AAGCTCATGTTGATAGAAAA+AGG | 0.279573 | 2_4:-53235499 | None:intergenic |
| CGTCCCTTTGCACAACCTTA+TGG | 0.298036 | 2_4:+53235558 | Msa0334650:CDS |
| CACTGCCTGAAGAAGAATAT+TGG | 0.300262 | 2_4:+53234377 | Msa0334650:CDS |
| TTCCTTGTTGATTGCAAGAA+TGG | 0.319276 | 2_4:+53234006 | Msa0334650:exon |
| TGGTGCCAATGTTGCTGTTT+AGG | 0.323507 | 2_4:+53236085 | Msa0334650:CDS |
| GCTTCCCAATATTCTTCTTC+AGG | 0.355894 | 2_4:-53234382 | None:intergenic |
| AAGAATATTGGGAAGCTGTT+TGG | 0.356329 | 2_4:+53234389 | Msa0334650:CDS |
| TGTAGCCAAGGCTATAGAAT+TGG | 0.358419 | 2_4:+53236195 | Msa0334650:three_prime_UTR |
| ATAAAATAGCCTTATTTCCT+AGG | 0.361639 | 2_4:-53236031 | None:intergenic |
| GCATTGTCCAAACCTAAATT+AGG | 0.363667 | 2_4:-53236059 | None:intergenic |
| ACTTCTAAAATTCTACAATA+AGG | 0.364972 | 2_4:-53236324 | None:intergenic |
| GTTTGTCATGCTGATACTTC+AGG | 0.375794 | 2_4:+53235942 | Msa0334650:CDS |
| GGATTTGCAATTTCAAAACT+TGG | 0.388201 | 2_4:+53235711 | Msa0334650:CDS |
| GATGTGCAGCTTGCACTTGC+AGG | 0.411503 | 2_4:+53234340 | Msa0334650:intron |
| ACTGCCTGAAGAAGAATATT+GGG | 0.412787 | 2_4:+53234378 | Msa0334650:CDS |
| TTTAGGTGTGCTCTCCATCA+TGG | 0.414422 | 2_4:+53236102 | Msa0334650:exon |
| TATCAACATGAGCTTTATCC+AGG | 0.416684 | 2_4:+53235507 | Msa0334650:CDS |
| AAACCTGTTTGTCATTTCCT+AGG | 0.419287 | 2_4:+53236014 | Msa0334650:CDS |
| ATGGGTACCTAATTTAGGTT+TGG | 0.424424 | 2_4:+53236052 | Msa0334650:CDS |
| ATAGAGTCAGTCCAAAATCT+TGG | 0.433215 | 2_4:+53235789 | Msa0334650:CDS |
| TCCTTGTTGATTGCAAGAAT+GGG | 0.433481 | 2_4:+53234007 | Msa0334650:exon |
| AGAAAGCAGTGATGTGTCAT+AGG | 0.434072 | 2_4:+53235814 | Msa0334650:CDS |
| TTGTTCATGCTTATCAATGA+AGG | 0.454114 | 2_4:-53235760 | None:intergenic |
| TAGAAGTTCTCGAAGAGAAG+TGG | 0.456535 | 2_4:-53234428 | None:intergenic |
| GTTGTACTTGTACCCTAAAG+AGG | 0.457493 | 2_4:+53236241 | Msa0334650:three_prime_UTR |
| TTTCCTAGGAAATGACAAAC+AGG | 0.459958 | 2_4:-53236017 | None:intergenic |
| TTGAATTAGTTAATGAGTTG+AGG | 0.462170 | 2_4:-53236399 | None:intergenic |
| GTGTGTCATCAATTTCCATT+GGG | 0.467040 | 2_4:-53235464 | None:intergenic |
| AAATAACAACCTTGAGGTCC+AGG | 0.471918 | 2_4:-53234454 | None:intergenic |
| CTTCTTCAGGCAGTGATGCA+TGG | 0.473820 | 2_4:-53234369 | None:intergenic |
| GAAGTGGGAATGGGAGTGTT+GGG | 0.474967 | 2_4:-53234412 | None:intergenic |
| GTTCCATCATTTGCCACCAA+TGG | 0.478916 | 2_4:-53235900 | None:intergenic |
| ACACCATAAGGTTGTGCAAA+GGG | 0.481077 | 2_4:-53235561 | None:intergenic |
| TCTATAGCCTTGGCTACAAA+AGG | 0.486665 | 2_4:-53236190 | None:intergenic |
| TTAGGTTTGGACAATGCCTA+TGG | 0.494021 | 2_4:+53236065 | Msa0334650:CDS |
| GAACTGAAATGAAAATGATA+AGG | 0.494524 | 2_4:-53234039 | None:intergenic |
| TTCTCGAAGAGAAGTGGGAA+TGG | 0.495855 | 2_4:-53234422 | None:intergenic |
| CTTCGAGAACTTCTAAAGCC+TGG | 0.497324 | 2_4:+53234436 | Msa0334650:CDS |
| TGTGTGTCATCAATTTCCAT+TGG | 0.497405 | 2_4:-53235465 | None:intergenic |
| AGAAGTGGGAATGGGAGTGT+TGG | 0.505103 | 2_4:-53234413 | None:intergenic |
| GGTGTGCTCTCCATCATGGT+TGG | 0.507917 | 2_4:+53236106 | Msa0334650:exon |
| GTTCCATTGGTGGCAAATGA+TGG | 0.508291 | 2_4:+53235897 | Msa0334650:CDS |
| TAAGTCCAATTCTATAGCCT+TGG | 0.509018 | 2_4:-53236200 | None:intergenic |
| AAATCCAATTAATGGTCCTA+AGG | 0.512590 | 2_4:-53235694 | None:intergenic |
| TCATAGGTTGAATTTCCAAA+AGG | 0.512621 | 2_4:+53235830 | Msa0334650:CDS |
| CATTAAAGATGTTGAAAGAG+AGG | 0.517722 | 2_4:+53235602 | Msa0334650:CDS |
| CAGATTATGAAAGCTGATCC+AGG | 0.521758 | 2_4:+53235987 | Msa0334650:CDS |
| TGTAAAGAAAGGTCCAATGA+AGG | 0.542642 | 2_4:+53235647 | Msa0334650:CDS |
| TCTCGAAGAGAAGTGGGAAT+GGG | 0.548515 | 2_4:-53234421 | None:intergenic |
| ATTAAAGATGTTGAAAGAGA+GGG | 0.555268 | 2_4:+53235603 | Msa0334650:CDS |
| CTTCTAAAGCCTGGACCTCA+AGG | 0.560362 | 2_4:+53234445 | Msa0334650:CDS |
| AACAGCAACATTGGCACCAT+AGG | 0.567015 | 2_4:-53236081 | None:intergenic |
| GCACACCTAAACAGCAACAT+TGG | 0.570853 | 2_4:-53236090 | None:intergenic |
| AGAAGTTCTCGAAGAGAAGT+GGG | 0.572137 | 2_4:-53234427 | None:intergenic |
| ATTTATGTTACACAATCCCA+TGG | 0.576823 | 2_4:-53236134 | None:intergenic |
| ATCATGGTTGGACACACCAT+GGG | 0.582351 | 2_4:+53236118 | Msa0334650:three_prime_UTR |
| CATGGTGTGTCCAACCATGA+TGG | 0.584358 | 2_4:-53236116 | None:intergenic |
| TGACAAACAGGTTTACTACC+TGG | 0.588938 | 2_4:-53236005 | None:intergenic |
| CATCATGGTTGGACACACCA+TGG | 0.594647 | 2_4:+53236117 | Msa0334650:three_prime_UTR |
| GGCATGAGGGTTAAATAACT+CGG | 0.598165 | 2_4:-53236442 | None:intergenic |
| TGTCATCAATTTCCATTGGG+AGG | 0.600962 | 2_4:-53235461 | None:intergenic |
| GATGAGGTGTGTGTAAAGAA+AGG | 0.627222 | 2_4:+53235636 | Msa0334650:CDS |
| GTAAAGAAAGGTCCAATGAA+GGG | 0.630060 | 2_4:+53235648 | Msa0334650:CDS |
| TAAAATTCTACAATAAGGCA+CGG | 0.630470 | 2_4:-53236319 | None:intergenic |
| TCCCATTCTTGCAATCAACA+AGG | 0.631111 | 2_4:-53234008 | None:intergenic |
| AACACCATAAGGTTGTGCAA+AGG | 0.645055 | 2_4:-53235562 | None:intergenic |
| TGAAATTGATGACCTCCCAA+TGG | 0.651240 | 2_4:+53235449 | Msa0334650:CDS |
| AGAGGGATATACTTATGATG+AGG | 0.666297 | 2_4:+53235620 | Msa0334650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATGTAATATTTTATAGTA+TGG | - | chr2_4:53234857-53234876 | None:intergenic | 10.0% |
| !! | TTAAACAACAACTTAAAATA+TGG | + | chr2_4:53234163-53234182 | Msa0334650:intron | 15.0% |
| !! | AATTTATGTAAGATCTAAAA+AGG | + | chr2_4:53234580-53234599 | Msa0334650:intron | 15.0% |
| !!! | ATCTAAAAAGGTTAATTTTA+TGG | + | chr2_4:53234592-53234611 | Msa0334650:intron | 15.0% |
| !!! | TCTAAAAAGGTTAATTTTAT+GGG | + | chr2_4:53234593-53234612 | Msa0334650:intron | 15.0% |
| !! | TTATATTTATAGTACATAAC+AGG | + | chr2_4:53234682-53234701 | Msa0334650:intron | 15.0% |
| !! | ATAAAATATTACATTTGAAG+AGG | + | chr2_4:53234861-53234880 | Msa0334650:intron | 15.0% |
| !!! | ATAGAGATATTATGTTTTTA+TGG | + | chr2_4:53234945-53234964 | Msa0334650:intron | 15.0% |
| !!! | ATTTTTTCTTATTTTAATCG+TGG | - | chr2_4:53235163-53235182 | None:intergenic | 15.0% |
| !! | AAGAAAAAATAGATAAAAGT+TGG | + | chr2_4:53235173-53235192 | Msa0334650:intron | 15.0% |
| !! | TCATGTTATAATAATGAAAA+TGG | + | chr2_4:53236295-53236314 | Msa0334650:three_prime_UTR | 15.0% |
| !!! | GCAAATAAAGTATTATTTGT+GGG | + | chr2_4:53234185-53234204 | Msa0334650:intron | 20.0% |
| !!! | CAAATAAAGTATTATTTGTG+GGG | + | chr2_4:53234186-53234205 | Msa0334650:intron | 20.0% |
| !!! | AAATAAAGTATTATTTGTGG+GGG | + | chr2_4:53234187-53234206 | Msa0334650:intron | 20.0% |
| !! | AAAATAAAATAACAACCTTG+AGG | - | chr2_4:53234463-53234482 | None:intergenic | 20.0% |
| !! | AATTGGTACCTATATAAATT+AGG | + | chr2_4:53234542-53234561 | Msa0334650:intron | 20.0% |
| !! | ATCTCAATCCTAATTTATAT+AGG | - | chr2_4:53234553-53234572 | None:intergenic | 20.0% |
| !! | GTTTCACTCTATAAATAAAA+TGG | - | chr2_4:53234786-53234805 | None:intergenic | 20.0% |
| !!! | TCTATCAAGTAATTTTTTGT+TGG | - | chr2_4:53234930-53234949 | None:intergenic | 20.0% |
| !!! | TATGGTTAATCAAATTTTGT+TGG | + | chr2_4:53234963-53234982 | Msa0334650:intron | 20.0% |
| !! | TCAAATAAACGATCTATTTA+AGG | + | chr2_4:53235206-53235225 | Msa0334650:intron | 20.0% |
| !! | ATAAGAGTCAAAATGAATTA+TGG | + | chr2_4:53235391-53235410 | Msa0334650:intron | 20.0% |
| !! | AGATAAAAATAAACACCATA+AGG | - | chr2_4:53235576-53235595 | None:intergenic | 20.0% |
| !!! | TTTTATTGTCATGAAATTCA+TGG | + | chr2_4:53235858-53235877 | Msa0334650:CDS | 20.0% |
| !!! | ACTTCTAAAATTCTACAATA+AGG | - | chr2_4:53236327-53236346 | None:intergenic | 20.0% |
| ! | GAACTGAAATGAAAATGATA+AGG | - | chr2_4:53234042-53234061 | None:intergenic | 25.0% |
| ! | TAAGTTTATAGTACATCAGT+TGG | - | chr2_4:53234146-53234165 | None:intergenic | 25.0% |
| !! | GGCAAATAAAGTATTATTTG+TGG | + | chr2_4:53234184-53234203 | Msa0334650:intron | 25.0% |
| ! | TATAAATAAAATGGTCTCTG+AGG | - | chr2_4:53234777-53234796 | None:intergenic | 25.0% |
| ! | TATAGAGTGAAACAATTCTA+AGG | + | chr2_4:53234793-53234812 | Msa0334650:intron | 25.0% |
| ! | ATAGAGTGAAACAATTCTAA+GGG | + | chr2_4:53234794-53234813 | Msa0334650:intron | 25.0% |
| !!! | GATCCTTTTAATTTAGATAG+AGG | - | chr2_4:53234820-53234839 | None:intergenic | 25.0% |
| ! | TTGTTAAGATGAAAGATGTT+TGG | - | chr2_4:53234889-53234908 | None:intergenic | 25.0% |
| !!! | CACTTTCTTTTTAGCAATAT+AGG | + | chr2_4:53235135-53235154 | Msa0334650:intron | 25.0% |
| ! | AATAGATCGTTTATTTGAGA+TGG | - | chr2_4:53235204-53235223 | None:intergenic | 25.0% |
| !!! | TCTTTGTTTTCCAAACATTA+AGG | + | chr2_4:53235231-53235250 | Msa0334650:intron | 25.0% |
| !!! | TTTTTAATTTACTACCATCG+TGG | + | chr2_4:53235332-53235351 | Msa0334650:intron | 25.0% |
| ! | AAACCTATTTATTATGACAC+AGG | + | chr2_4:53235423-53235442 | Msa0334650:intron | 25.0% |
| ! | ATTAAAGATGTTGAAAGAGA+GGG | + | chr2_4:53235603-53235622 | Msa0334650:CDS | 25.0% |
| !! | AAATTTTGTGCAAAATCCTT+AGG | + | chr2_4:53235678-53235697 | Msa0334650:CDS | 25.0% |
| ! | GAAATTGCAAATCCAATTAA+TGG | - | chr2_4:53235705-53235724 | None:intergenic | 25.0% |
| !! | GACAATAAAATACAACCTTT+TGG | - | chr2_4:53235848-53235867 | None:intergenic | 25.0% |
| !!! | ATAAAATAGCCTTATTTCCT+AGG | - | chr2_4:53236034-53236053 | None:intergenic | 25.0% |
| !!! | TAGGAAATAAGGCTATTTTA+TGG | + | chr2_4:53236033-53236052 | Msa0334650:CDS | 25.0% |
| !!! | AGGAAATAAGGCTATTTTAT+GGG | + | chr2_4:53236034-53236053 | Msa0334650:CDS | 25.0% |
| !! | ATTTTATGGGTACCTAATTT+AGG | + | chr2_4:53236047-53236066 | Msa0334650:CDS | 25.0% |
| ! | TAAAATTCTACAATAAGGCA+CGG | - | chr2_4:53236322-53236341 | None:intergenic | 25.0% |
| ! | TTGAATTAGTTAATGAGTTG+AGG | - | chr2_4:53236402-53236421 | None:intergenic | 25.0% |
| !! | AGAATTCATAAGTGTTGAGA+GGG | - | chr2_4:53234110-53234129 | None:intergenic | 30.0% |
| !! | AAGAATTCATAAGTGTTGAG+AGG | - | chr2_4:53234111-53234130 | None:intergenic | 30.0% |
| TCTCAACACTTATGAATTCT+TGG | + | chr2_4:53234110-53234129 | Msa0334650:intron | 30.0% | |
| GTTACCAATAGAATGAATGT+TGG | - | chr2_4:53234709-53234728 | None:intergenic | 30.0% | |
| TCTTATCCTTTATTGCAGTA+TGG | + | chr2_4:53234743-53234762 | Msa0334650:intron | 30.0% | |
| ACGACTATAACCTTAATGTT+TGG | - | chr2_4:53235244-53235263 | None:intergenic | 30.0% | |
| ! | CTCTTATATCATGCTAGTTT+CGG | - | chr2_4:53235378-53235397 | None:intergenic | 30.0% |
| ACACCTGTGTCATAATAAAT+AGG | - | chr2_4:53235429-53235448 | None:intergenic | 30.0% | |
| !! | GTTGATAGAAAAAGGCTTTT+GGG | - | chr2_4:53235494-53235513 | None:intergenic | 30.0% |
| !! | TGTTGATAGAAAAAGGCTTT+TGG | - | chr2_4:53235495-53235514 | None:intergenic | 30.0% |
| ! | AAGCTCATGTTGATAGAAAA+AGG | - | chr2_4:53235502-53235521 | None:intergenic | 30.0% |
| CATTAAAGATGTTGAAAGAG+AGG | + | chr2_4:53235602-53235621 | Msa0334650:CDS | 30.0% | |
| ! | AATTTTTCTTCTCCCTTCAT+TGG | - | chr2_4:53235663-53235682 | None:intergenic | 30.0% |
| AAATCCTTAGGACCATTAAT+TGG | + | chr2_4:53235690-53235709 | Msa0334650:CDS | 30.0% | |
| AAATCCAATTAATGGTCCTA+AGG | - | chr2_4:53235697-53235716 | None:intergenic | 30.0% | |
| GGATTTGCAATTTCAAAACT+TGG | + | chr2_4:53235711-53235730 | Msa0334650:CDS | 30.0% | |
| TTGTTCATGCTTATCAATGA+AGG | - | chr2_4:53235763-53235782 | None:intergenic | 30.0% | |
| ! | TCATAGGTTGAATTTCCAAA+AGG | + | chr2_4:53235830-53235849 | Msa0334650:CDS | 30.0% |
| ! | TTGTCATTTCCTAGGAAATA+AGG | + | chr2_4:53236022-53236041 | Msa0334650:CDS | 30.0% |
| ATTTATGTTACACAATCCCA+TGG | - | chr2_4:53236137-53236156 | None:intergenic | 30.0% | |
| ! | TTCCTTGTTGATTGCAAGAA+TGG | + | chr2_4:53234006-53234025 | Msa0334650:exon | 35.0% |
| ! | TCCTTGTTGATTGCAAGAAT+GGG | + | chr2_4:53234007-53234026 | Msa0334650:exon | 35.0% |
| ! | AAAGTATTATTTGTGGGGGT+TGG | + | chr2_4:53234191-53234210 | Msa0334650:intron | 35.0% |
| ACTGCCTGAAGAAGAATATT+GGG | + | chr2_4:53234378-53234397 | Msa0334650:CDS | 35.0% | |
| AAGAATATTGGGAAGCTGTT+TGG | + | chr2_4:53234389-53234408 | Msa0334650:CDS | 35.0% | |
| TCCTGCAGAGACTAAAAAAT+TGG | + | chr2_4:53234525-53234544 | Msa0334650:intron | 35.0% | |
| !!! | ACCAATTTTTTAGTCTCTGC+AGG | - | chr2_4:53234529-53234548 | None:intergenic | 35.0% |
| AGGTCCAACATTCATTCTAT+TGG | + | chr2_4:53234702-53234721 | Msa0334650:intron | 35.0% | |
| GGGCCTCTATCTAAATTAAA+AGG | + | chr2_4:53234814-53234833 | Msa0334650:intron | 35.0% | |
| TAGTATGGTGTTCTAATTGC+AGG | - | chr2_4:53234842-53234861 | None:intergenic | 35.0% | |
| GGGGAATCATTCATTTAACA+AGG | + | chr2_4:53235037-53235056 | Msa0334650:intron | 35.0% | |
| !! | ACCCATTTTTCTTCCTCTAA+CGG | - | chr2_4:53235083-53235102 | None:intergenic | 35.0% |
| ! | GATCGTTTATTTGAGATGGT+GGG | - | chr2_4:53235200-53235219 | None:intergenic | 35.0% |
| ! | AGATCGTTTATTTGAGATGG+TGG | - | chr2_4:53235201-53235220 | None:intergenic | 35.0% |
| GTGTGTCATCAATTTCCATT+GGG | - | chr2_4:53235467-53235486 | None:intergenic | 35.0% | |
| TGTGTGTCATCAATTTCCAT+TGG | - | chr2_4:53235468-53235487 | None:intergenic | 35.0% | |
| ! | TATCAACATGAGCTTTATCC+AGG | + | chr2_4:53235507-53235526 | Msa0334650:CDS | 35.0% |
| AGAGGGATATACTTATGATG+AGG | + | chr2_4:53235620-53235639 | Msa0334650:CDS | 35.0% | |
| TGTAAAGAAAGGTCCAATGA+AGG | + | chr2_4:53235647-53235666 | Msa0334650:CDS | 35.0% | |
| GTAAAGAAAGGTCCAATGAA+GGG | + | chr2_4:53235648-53235667 | Msa0334650:CDS | 35.0% | |
| ATAGAGTCAGTCCAAAATCT+TGG | + | chr2_4:53235789-53235808 | Msa0334650:CDS | 35.0% | |
| ! | TCATGGAACAACAGCTTTTA+TGG | + | chr2_4:53235875-53235894 | Msa0334650:CDS | 35.0% |
| ! | AACAGCTTTTATGGTTCCAT+TGG | + | chr2_4:53235884-53235903 | Msa0334650:CDS | 35.0% |
| ! | AAACCTGTTTGTCATTTCCT+AGG | + | chr2_4:53236014-53236033 | Msa0334650:CDS | 35.0% |
| TTTCCTAGGAAATGACAAAC+AGG | - | chr2_4:53236020-53236039 | None:intergenic | 35.0% | |
| ! | ATGGGTACCTAATTTAGGTT+TGG | + | chr2_4:53236052-53236071 | Msa0334650:CDS | 35.0% |
| GCATTGTCCAAACCTAAATT+AGG | - | chr2_4:53236062-53236081 | None:intergenic | 35.0% | |
| TAAGTCCAATTCTATAGCCT+TGG | - | chr2_4:53236203-53236222 | None:intergenic | 35.0% | |
| TCCCATTCTTGCAATCAACA+AGG | - | chr2_4:53234011-53234030 | None:intergenic | 40.0% | |
| CACTGCCTGAAGAAGAATAT+TGG | + | chr2_4:53234377-53234396 | Msa0334650:CDS | 40.0% | |
| GCTTCCCAATATTCTTCTTC+AGG | - | chr2_4:53234385-53234404 | None:intergenic | 40.0% | |
| AGAAGTTCTCGAAGAGAAGT+GGG | - | chr2_4:53234430-53234449 | None:intergenic | 40.0% | |
| TAGAAGTTCTCGAAGAGAAG+TGG | - | chr2_4:53234431-53234450 | None:intergenic | 40.0% | |
| AAATAACAACCTTGAGGTCC+AGG | - | chr2_4:53234457-53234476 | None:intergenic | 40.0% | |
| ! | ACTGTTAGAGCATCTTCAGT+GGG | + | chr2_4:53235017-53235036 | Msa0334650:intron | 40.0% |
| !! | CCATTTTTCTTCCTCTAACG+GGG | - | chr2_4:53235081-53235100 | None:intergenic | 40.0% |
| !! | CCCATTTTTCTTCCTCTAAC+GGG | - | chr2_4:53235082-53235101 | None:intergenic | 40.0% |
| CCCGTTAGAGGAAGAAAAAT+GGG | + | chr2_4:53235079-53235098 | Msa0334650:intron | 40.0% | |
| ! | TGAAATTGATGACCTCCCAA+TGG | + | chr2_4:53235449-53235468 | Msa0334650:CDS | 40.0% |
| TGTCATCAATTTCCATTGGG+AGG | - | chr2_4:53235464-53235483 | None:intergenic | 40.0% | |
| !!! | TGCACGTTCATTGATTTTCC+TGG | - | chr2_4:53235528-53235547 | None:intergenic | 40.0% |
| ACACCATAAGGTTGTGCAAA+GGG | - | chr2_4:53235564-53235583 | None:intergenic | 40.0% | |
| AACACCATAAGGTTGTGCAA+AGG | - | chr2_4:53235565-53235584 | None:intergenic | 40.0% | |
| GATGAGGTGTGTGTAAAGAA+AGG | + | chr2_4:53235636-53235655 | Msa0334650:CDS | 40.0% | |
| ! | CTGCTTTCTCTCCAAGATTT+TGG | - | chr2_4:53235803-53235822 | None:intergenic | 40.0% |
| AGAAAGCAGTGATGTGTCAT+AGG | + | chr2_4:53235814-53235833 | Msa0334650:CDS | 40.0% | |
| ! | AGCTTTTATGGTTCCATTGG+TGG | + | chr2_4:53235887-53235906 | Msa0334650:CDS | 40.0% |
| GTTTGTCATGCTGATACTTC+AGG | + | chr2_4:53235942-53235961 | Msa0334650:CDS | 40.0% | |
| CAGATTATGAAAGCTGATCC+AGG | + | chr2_4:53235987-53236006 | Msa0334650:CDS | 40.0% | |
| TGACAAACAGGTTTACTACC+TGG | - | chr2_4:53236008-53236027 | None:intergenic | 40.0% | |
| TTAGGTTTGGACAATGCCTA+TGG | + | chr2_4:53236065-53236084 | Msa0334650:CDS | 40.0% | |
| ! | GTTTGTACCTTTTGTAGCCA+AGG | + | chr2_4:53236183-53236202 | Msa0334650:three_prime_UTR | 40.0% |
| ! | TCTATAGCCTTGGCTACAAA+AGG | - | chr2_4:53236193-53236212 | None:intergenic | 40.0% |
| TGTAGCCAAGGCTATAGAAT+TGG | + | chr2_4:53236195-53236214 | Msa0334650:three_prime_UTR | 40.0% | |
| GTTGTACTTGTACCCTAAAG+AGG | + | chr2_4:53236241-53236260 | Msa0334650:three_prime_UTR | 40.0% | |
| !! | CATAAGTGTTGAGAGGGTCA+TGG | - | chr2_4:53234104-53234123 | None:intergenic | 45.0% |
| TCTCGAAGAGAAGTGGGAAT+GGG | - | chr2_4:53234424-53234443 | None:intergenic | 45.0% | |
| TTCTCGAAGAGAAGTGGGAA+TGG | - | chr2_4:53234425-53234444 | None:intergenic | 45.0% | |
| !! | CTTCGAGAACTTCTAAAGCC+TGG | + | chr2_4:53234436-53234455 | Msa0334650:CDS | 45.0% |
| GCAGCACCATACTGCAATAA+AGG | - | chr2_4:53234752-53234771 | None:intergenic | 45.0% | |
| ! | GACTGTTAGAGCATCTTCAG+TGG | + | chr2_4:53235016-53235035 | Msa0334650:intron | 45.0% |
| ! | CTGTTAGAGCATCTTCAGTG+GGG | + | chr2_4:53235018-53235037 | Msa0334650:intron | 45.0% |
| CCCCGTTAGAGGAAGAAAAA+TGG | + | chr2_4:53235078-53235097 | Msa0334650:intron | 45.0% | |
| ! | GTTAGTTAGAGCATCCACGA+TGG | - | chr2_4:53235349-53235368 | None:intergenic | 45.0% |
| ! | GTTCCATTGGTGGCAAATGA+TGG | + | chr2_4:53235897-53235916 | Msa0334650:CDS | 45.0% |
| GTTCCATCATTTGCCACCAA+TGG | - | chr2_4:53235903-53235922 | None:intergenic | 45.0% | |
| AACAGCAACATTGGCACCAT+AGG | - | chr2_4:53236084-53236103 | None:intergenic | 45.0% | |
| !! | TGGTGCCAATGTTGCTGTTT+AGG | + | chr2_4:53236085-53236104 | Msa0334650:CDS | 45.0% |
| GCACACCTAAACAGCAACAT+TGG | - | chr2_4:53236093-53236112 | None:intergenic | 45.0% | |
| TTTAGGTGTGCTCTCCATCA+TGG | + | chr2_4:53236102-53236121 | Msa0334650:exon | 45.0% | |
| ATCATGGTTGGACACACCAT+GGG | + | chr2_4:53236118-53236137 | Msa0334650:three_prime_UTR | 45.0% | |
| TGCAAGATCGTGCCTCTTTA+GGG | - | chr2_4:53236256-53236275 | None:intergenic | 45.0% | |
| ATGCAAGATCGTGCCTCTTT+AGG | - | chr2_4:53236257-53236276 | None:intergenic | 45.0% | |
| GAGAGGGTCATGGAGATGAA+AGG | - | chr2_4:53234094-53234113 | None:intergenic | 50.0% | |
| CTTCTTCAGGCAGTGATGCA+TGG | - | chr2_4:53234372-53234391 | None:intergenic | 50.0% | |
| !! | GAAGTGGGAATGGGAGTGTT+GGG | - | chr2_4:53234415-53234434 | None:intergenic | 50.0% |
| ! | AGAAGTGGGAATGGGAGTGT+TGG | - | chr2_4:53234416-53234435 | None:intergenic | 50.0% |
| !! | CTTCTAAAGCCTGGACCTCA+AGG | + | chr2_4:53234445-53234464 | Msa0334650:CDS | 50.0% |
| CCTCTAACGGGGTTCTTAAC+AGG | - | chr2_4:53235070-53235089 | None:intergenic | 50.0% | |
| CCTGTTAAGAACCCCGTTAG+AGG | + | chr2_4:53235067-53235086 | Msa0334650:intron | 50.0% | |
| CGTCCCTTTGCACAACCTTA+TGG | + | chr2_4:53235558-53235577 | Msa0334650:CDS | 50.0% | |
| CATGGTGTGTCCAACCATGA+TGG | - | chr2_4:53236119-53236138 | None:intergenic | 50.0% | |
| CATCATGGTTGGACACACCA+TGG | + | chr2_4:53236117-53236136 | Msa0334650:three_prime_UTR | 50.0% | |
| GATGTGCAGCTTGCACTTGC+AGG | + | chr2_4:53234340-53234359 | Msa0334650:intron | 55.0% | |
| GGTGTGCTCTCCATCATGGT+TGG | + | chr2_4:53236106-53236125 | Msa0334650:exon | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 53233979 | 53236451 | 53233979 | ID=Msa0334650;Name=Msa0334650 |
| chr2_4 | mRNA | 53233979 | 53236451 | 53233979 | ID=Msa0334650-mRNA-1;Parent=Msa0334650;Name=Msa0334650-mRNA-1;_AED=0.01;_eAED=0.01;_QI=46|1|1|1|1|1|3|345|273 |
| chr2_4 | exon | 53233979 | 53234066 | 53233979 | ID=Msa0334650-mRNA-1:exon:16093;Parent=Msa0334650-mRNA-1 |
| chr2_4 | exon | 53234349 | 53234466 | 53234349 | ID=Msa0334650-mRNA-1:exon:16094;Parent=Msa0334650-mRNA-1 |
| chr2_4 | exon | 53235445 | 53236451 | 53235445 | ID=Msa0334650-mRNA-1:exon:16095;Parent=Msa0334650-mRNA-1 |
| chr2_4 | five_prime_UTR | 53233979 | 53234024 | 53233979 | ID=Msa0334650-mRNA-1:five_prime_utr;Parent=Msa0334650-mRNA-1 |
| chr2_4 | CDS | 53234025 | 53234066 | 53234025 | ID=Msa0334650-mRNA-1:cds;Parent=Msa0334650-mRNA-1 |
| chr2_4 | CDS | 53234349 | 53234466 | 53234349 | ID=Msa0334650-mRNA-1:cds;Parent=Msa0334650-mRNA-1 |
| chr2_4 | CDS | 53235445 | 53236106 | 53235445 | ID=Msa0334650-mRNA-1:cds;Parent=Msa0334650-mRNA-1 |
| chr2_4 | three_prime_UTR | 53236107 | 53236451 | 53236107 | ID=Msa0334650-mRNA-1:three_prime_utr;Parent=Msa0334650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
