AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0891010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0891010 MtrunA17_Chr2g0307131 90.529 359 25 2 1 354 1 355 0.0 623
Msa0891010 MtrunA17_Chr2g0307141 85.989 364 38 4 1 355 1 360 0.0 584
Msa0891010 MtrunA17_Chr6g0468491 68.452 336 81 5 23 355 1 314 7.15e-155 437
Msa0891010 MtrunA17_Chr4g0033391 64.124 354 91 7 1 353 1 319 1.05e-143 409
Msa0891010 MtrunA17_Chr4g0033291 63.342 371 78 9 1 355 1 329 9.80e-136 389
Msa0891010 MtrunA17_Chr6g0468461 63.218 348 86 8 1 338 1 316 4.03e-133 384
Msa0891010 MtrunA17_Chr4g0054581 59.536 388 115 10 1 355 1 379 5.32e-132 382
Msa0891010 MtrunA17_Chr4g0033281 61.957 368 83 6 1 354 1 325 9.28e-132 379
Msa0891010 MtrunA17_Chr4g0054621 51.762 369 137 11 1 355 1 342 7.51e-108 319
Msa0891010 MtrunA17_Chr7g0225901 54.633 313 64 5 23 330 1 240 3.61e-100 296
Msa0891010 MtrunA17_Chr5g0400621 54.274 234 94 3 133 354 101 333 1.37e-66 213
Msa0891010 MtrunA17_Chr5g0400641 56.250 160 62 2 181 336 1 156 4.36e-49 162
Msa0891010 MtrunA17_Chr2g0280161 46.927 179 94 1 176 353 175 353 4.07e-47 163
Msa0891010 MtrunA17_Chr5g0400661 36.111 360 168 11 13 346 7 330 4.56e-47 162
Msa0891010 MtrunA17_Chr4g0002801 38.400 250 135 4 108 351 95 331 9.17e-46 159
Msa0891010 MtrunA17_Chr4g0002781 38.554 249 136 4 110 351 112 350 7.99e-43 152
Msa0891010 MtrunA17_Chr4g0054551 45.614 171 89 2 176 345 153 320 1.12e-42 150
Msa0891010 MtrunA17_Chr4g0054561 46.784 171 87 2 176 345 153 320 2.35e-42 150
Msa0891010 MtrunA17_Chr4g0049331 35.740 277 151 5 97 346 27 303 1.44e-41 147
Msa0891010 MtrunA17_Chr8g0336681 33.117 308 163 7 80 351 36 336 1.51e-41 148
Msa0891010 MtrunA17_Chr2g0333621 37.344 241 141 4 117 354 82 315 5.16e-41 146
Msa0891010 MtrunA17_Chr2g0333641 38.397 237 128 6 123 345 70 302 9.74e-41 145
Msa0891010 MtrunA17_Chr4g0054571 46.500 200 92 4 158 346 130 325 2.27e-40 145
Msa0891010 MtrunA17_Chr5g0400671 32.492 317 175 6 54 347 20 320 1.20e-37 137
Msa0891010 MtrunA17_Chr2g0333541 36.194 268 154 5 96 349 3 267 1.34e-36 133
Msa0891010 MtrunA17_Chr2g0333611 33.945 218 140 3 136 352 3 217 2.11e-36 131
Msa0891010 MtrunA17_Chr7g0249811 40.513 195 106 2 157 351 145 329 2.19e-36 134
Msa0891010 MtrunA17_Chr4g0002851 36.601 153 65 2 201 346 65 192 5.25e-22 92.4
Msa0891010 MtrunA17_Chr4g0002831 35.928 167 79 5 189 346 53 200 9.52e-22 91.7
Msa0891010 MtrunA17_Chr7g0233441 36.986 146 82 2 201 346 57 192 1.25e-21 91.3
Msa0891010 MtrunA17_Chr1g0185621 33.784 148 78 4 178 311 475 616 1.47e-18 87.0
Msa0891010 MtrunA17_Chr8g0366751 32.727 165 97 3 164 314 445 609 2.08e-16 80.5
Msa0891010 MtrunA17_Chr8g0346161 31.469 143 87 4 178 314 291 428 5.47e-16 79.0
Msa0891010 MtrunA17_Chr5g0411341 31.737 167 96 4 164 314 476 640 1.18e-14 75.1
Msa0891010 MtrunA17_Chr7g0275821 30.519 154 99 2 178 331 252 397 3.61e-14 73.2
Msa0891010 MtrunA17_Chr8g0365711 27.027 185 108 4 157 327 227 398 3.96e-14 73.2
Msa0891010 MtrunA17_Chr7g0260841 43.333 90 42 2 151 231 319 408 2.25e-13 71.2
Msa0891010 MtrunA17_Chr8g0346151 33.333 117 68 3 178 287 279 392 3.07e-12 67.4
Msa0891010 MtrunA17_Chr1g0211081 26.606 218 128 6 129 314 264 481 3.88e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0891010 AT4G37850.2 40.359 223 122 4 135 353 113 328 1.72e-41 148
Msa0891010 AT4G37850.1 40.359 223 122 4 135 353 113 328 1.72e-41 148
Msa0891010 AT2G22750.2 43.386 189 101 2 162 345 110 297 6.37e-37 135
Msa0891010 AT2G22760.1 33.449 287 160 7 82 346 14 291 7.45e-37 135
Msa0891010 AT2G22750.3 43.386 189 101 2 162 345 138 325 1.19e-36 135
Msa0891010 AT2G22750.5 43.386 189 101 2 162 345 134 321 1.20e-36 135
Msa0891010 AT2G22750.1 43.386 189 100 3 162 345 110 296 1.11e-35 132
Msa0891010 AT2G22750.4 43.386 189 100 3 162 345 138 324 1.80e-35 132
Msa0891010 AT2G22760.2 32.963 270 151 6 82 330 14 274 1.37e-32 123
Msa0891010 AT2G22770.1 33.077 260 120 8 116 346 81 315 8.52e-32 122
Msa0891010 AT5G46760.1 32.394 213 111 8 147 334 388 592 1.69e-19 90.1
Msa0891010 AT4G17880.1 36.420 162 85 5 164 311 399 556 6.26e-18 85.5
Msa0891010 AT1G32640.1 31.447 159 97 4 164 314 435 589 2.33e-15 77.8
Msa0891010 AT1G01260.1 29.310 174 96 4 157 327 411 560 6.13e-14 73.6
Msa0891010 AT1G01260.2 29.310 174 96 4 157 327 411 560 6.13e-14 73.6
Msa0891010 AT1G01260.3 29.310 174 96 4 157 327 411 560 6.13e-14 73.6
Msa0891010 AT2G46510.1 45.000 80 39 2 164 240 378 455 6.65e-14 73.2
Msa0891010 AT1G63650.3 30.409 171 92 5 178 326 405 570 8.18e-14 73.2
Msa0891010 AT1G63650.1 30.409 171 92 5 178 326 405 570 8.18e-14 73.2
Msa0891010 AT1G63650.2 30.409 171 92 5 178 326 405 570 8.18e-14 73.2
Msa0891010 AT4G16430.1 46.154 78 39 1 164 238 303 380 1.39e-13 72.0
Msa0891010 AT4G09820.1 34.127 126 53 3 179 299 364 464 2.91e-13 71.2
Msa0891010 AT5G41315.3 30.682 176 90 7 178 326 446 616 6.03e-12 67.4
Msa0891010 AT5G41315.2 30.682 176 90 7 178 326 449 619 6.98e-12 67.0
Msa0891010 AT5G41315.1 30.682 176 90 7 178 326 441 611 8.23e-12 67.0
Msa0891010 AT4G00870.1 32.558 129 56 3 179 290 250 364 1.12e-11 66.2

Find 54 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACTAGTAGTAGGTGAATT+TGG 0.157544 6_1:+64184979 None:intergenic
CGATATTGATAAAACAATTA+TGG 0.241298 6_1:-64185100 Msa0891010:CDS
AACTAGTAGTAGGTGAATTT+GGG 0.258364 6_1:+64184980 None:intergenic
TCTTGTTCCCAACCTTAAAA+AGG 0.269180 6_1:-64184752 Msa0891010:intron
AGTGGTTTGCATCTTCTTAT+AGG 0.285856 6_1:+64183569 None:intergenic
CAGCAGCTGGTTATCTGATT+TGG 0.298434 6_1:-64186434 Msa0891010:intron
CAAGTGGAAGCAAAAGTGTT+AGG 0.299198 6_1:-64184091 Msa0891010:CDS
TAAGATAATACTATGTATAT+TGG 0.331197 6_1:-64183525 Msa0891010:three_prime_UTR
CACCAGTATCAAGCATATTC+AGG 0.356769 6_1:+64185247 None:intergenic
CTGCAAGAGCAATGAAGCTT+TGG 0.357341 6_1:+64184776 None:intergenic
TTCAGTGTCTCCTACCGAAT+TGG 0.361875 6_1:-64184902 Msa0891010:CDS
AAGTGTTACTGTTGAGACTA+TGG 0.367734 6_1:-64186494 Msa0891010:exon
TGTATCTACCCGTGCGATGC+AGG 0.386085 6_1:-64183452 Msa0891010:three_prime_UTR
TGCAGGGATAAATTATGTTT+AGG 0.391523 6_1:-64183435 Msa0891010:three_prime_UTR
GGGACTTCTAGTCAAAATTA+TGG 0.406834 6_1:-64184029 Msa0891010:CDS
TCATCATCGCTGCAGAAGTC+TGG 0.439235 6_1:+64184163 None:intergenic
GGTCAAATCCAGAAAATTGT+TGG 0.450466 6_1:+64184956 None:intergenic
ATTTAGTGATGAAACAAAGT+TGG 0.458588 6_1:-64185136 Msa0891010:CDS
TGCAAGAGCAATGAAGCTTT+GGG 0.460124 6_1:+64184777 None:intergenic
AAGTGGAAGCAAAAGTGTTA+GGG 0.462288 6_1:-64184090 Msa0891010:CDS
TAGGGAAATACATGTTGATT+CGG 0.467508 6_1:-64184072 Msa0891010:CDS
TGATATTACTATCATTGCTC+AGG 0.480526 6_1:-64183939 Msa0891010:intron
GTCAAATCCAGAAAATTGTT+GGG 0.480993 6_1:+64184957 None:intergenic
GAGCGCAATGAAAGTGTTGT+TGG 0.490652 6_1:-64184124 Msa0891010:CDS
ATCGCTGCAGAAGTCTGGTT+TGG 0.490772 6_1:+64184168 None:intergenic
AATTGTTGGGAACTAGTAGT+AGG 0.495232 6_1:+64184970 None:intergenic
GTTGATTCGGATCCAATGTA+AGG 0.498122 6_1:-64184059 Msa0891010:CDS
GTCCCTTGTGATCCTTACAT+TGG 0.512495 6_1:+64184047 None:intergenic
AACCTGAATATGCTTGATAC+TGG 0.514353 6_1:-64185249 Msa0891010:CDS
GATATCATTTATCGAAAATG+AGG 0.521059 6_1:+64183598 None:intergenic
GAGCAATGATAGTAATATCA+AGG 0.522227 6_1:+64183942 None:intergenic
GGAACACAATTTATTTGCTG+AGG 0.543803 6_1:-64185277 Msa0891010:CDS
TAATTTATCCCTGCATCGCA+CGG 0.551275 6_1:+64183443 None:intergenic
TAATGTTGAGGATCATATCA+TGG 0.558527 6_1:-64184827 Msa0891010:CDS
AAGTATCATCAAGCAGCAGC+TGG 0.560203 6_1:-64186447 Msa0891010:CDS
TCAAGGATGGAATCTCCAAA+GGG 0.562816 6_1:+64183959 None:intergenic
GTATCTACCCGTGCGATGCA+GGG 0.568334 6_1:-64183451 Msa0891010:three_prime_UTR
GTCTCGTGCTAATAATGTTG+AGG 0.579610 6_1:-64184839 Msa0891010:CDS
ATCAAGGATGGAATCTCCAA+AGG 0.580088 6_1:+64183958 None:intergenic
AATGATAGTAATATCAAGGA+TGG 0.583388 6_1:+64183946 None:intergenic
AAATGTGTTGCTGAGAGTTG+TGG 0.591764 6_1:+64185155 None:intergenic
AATTTATCCCTGCATCGCAC+GGG 0.600301 6_1:+64183444 None:intergenic
ATTGCGCTCATCAAATGATG+AGG 0.605739 6_1:+64184138 None:intergenic
TGTTGGTTCAATATTTCAAG+TGG 0.607961 6_1:-64184107 Msa0891010:CDS
GGACACTATCAAATACATGA+AGG 0.619002 6_1:-64184263 Msa0891010:CDS
GATCCAATGTAAGGATCACA+AGG 0.634465 6_1:-64184050 Msa0891010:CDS
GAATATGCTTGATACTGGTG+TGG 0.643647 6_1:-64185244 Msa0891010:CDS
TCATCATAATAACATGAACA+TGG 0.660733 6_1:-64183632 Msa0891010:exon
ACTAGTAGTAGGTGAATTTG+GGG 0.663794 6_1:+64184981 None:intergenic
ACTTGTGAAGAACATACGCA+AGG 0.680827 6_1:-64183672 Msa0891010:CDS
TATATACTGAATTTAAAACA+AGG 0.682236 6_1:+64186516 None:intergenic
TGTTACTGTTGAGACTATGG+AGG 0.705682 6_1:-64186491 Msa0891010:exon
ATCCAATGTAAGGATCACAA+GGG 0.757305 6_1:-64184049 Msa0891010:CDS
CTAGTAGTAGGTGAATTTGG+GGG 0.786954 6_1:+64184982 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATATTCTTTATAAAAATA+AGG - chr6_1:64184428-64184447 Msa0891010:intron 10.0%
!! ATAAAAACTAAATATTATCA+AGG - chr6_1:64185237-64185256 Msa0891010:CDS 10.0%
!!! TTCGATAATATATTTTTTTT+TGG + chr6_1:64185269-64185288 None:intergenic 10.0%
!! AAGATTAATATTAAATACAA+TGG + chr6_1:64186122-64186141 None:intergenic 10.0%
!!! AATCTTAATTATTTTATAGT+TGG - chr6_1:64186136-64186155 Msa0891010:intron 10.0%
!!! ATCTTAATTATTTTATAGTT+GGG - chr6_1:64186137-64186156 Msa0891010:intron 10.0%
!!! TATTGTTTTAAAAAATGAAA+TGG - chr6_1:64186463-64186482 Msa0891010:CDS 10.0%
!!! TATATACTGAATTTAAAACA+AGG + chr6_1:64183346-64183365 None:intergenic 15.0%
!! AAAAAAAAAACTACAACAAA+TGG - chr6_1:64183897-64183916 Msa0891010:intron 15.0%
!! TAAATATATCAGTTATTGAA+TGG - chr6_1:64184176-64184195 Msa0891010:CDS 15.0%
!! CAACATACAAATTATATTAT+GGG + chr6_1:64184265-64184284 None:intergenic 15.0%
!! TTGTGTAAAATTATATTAGA+TGG - chr6_1:64185554-64185573 Msa0891010:intron 15.0%
!!! AAATTAAAGTATTTTATTCC+AGG - chr6_1:64186028-64186047 Msa0891010:intron 15.0%
!! AATATATCAAGCAAATATAT+TGG + chr6_1:64186060-64186079 None:intergenic 15.0%
!! TAAGATAATACTATGTATAT+TGG - chr6_1:64186334-64186353 Msa0891010:intron 15.0%
!!! TTTTATCGTTTTTCTTTTTT+TGG - chr6_1:64186377-64186396 Msa0891010:intron 15.0%
!! GTTATAAACATACTACAAAA+TGG + chr6_1:64183548-64183567 None:intergenic 20.0%
!! TTGCTAAATTTCCATATTTA+GGG + chr6_1:64183652-64183671 None:intergenic 20.0%
!!! TAGTAAACAATTCAGTTTTT+AGG - chr6_1:64183749-64183768 Msa0891010:intron 20.0%
!! GCTAAAAAAAATTGATTATG+TGG - chr6_1:64184057-64184076 Msa0891010:CDS 20.0%
!! TTATTTAAGAAACATTGCTA+GGG + chr6_1:64184129-64184148 None:intergenic 20.0%
!! ATTATTTAAGAAACATTGCT+AGG + chr6_1:64184130-64184149 None:intergenic 20.0%
!!! TTATATTATGGGTTTTTCTA+TGG + chr6_1:64184254-64184273 None:intergenic 20.0%
!! GCAACATACAAATTATATTA+TGG + chr6_1:64184266-64184285 None:intergenic 20.0%
!!! TGTAGTTACTTATTTTCAAA+AGG - chr6_1:64184464-64184483 Msa0891010:intron 20.0%
!!! ATTGTAGTTTATTTTGTTCT+TGG + chr6_1:64184675-64184694 None:intergenic 20.0%
!! CGATATTGATAAAACAATTA+TGG - chr6_1:64184759-64184778 Msa0891010:CDS 20.0%
!!! TTCATTTTGTTTTGAGTTTA+AGG + chr6_1:64184932-64184951 None:intergenic 20.0%
!!! ATTATTCTTGTTTTCCAATT+CGG + chr6_1:64184974-64184993 None:intergenic 20.0%
!!! TTACTTATTGTACCTTTTTA+AGG + chr6_1:64185122-64185141 None:intergenic 20.0%
!! AATATATTATCGAACAATAG+AGG - chr6_1:64185275-64185294 Msa0891010:CDS 20.0%
!!! TATGCAGTTTAAAGTTATTT+TGG - chr6_1:64185382-64185401 Msa0891010:intron 20.0%
!!! TTTTGTTGCAATTTAAAGAT+AGG + chr6_1:64185971-64185990 None:intergenic 20.0%
!!! ATTTTGTTGTCTTTGAATTT+TGG - chr6_1:64186081-64186100 Msa0891010:intron 20.0%
!! AAGAATTTAAAAAGAAACAG+TGG + chr6_1:64186311-64186330 None:intergenic 20.0%
! ACTTAGGGATATTATGTATT+AGG + chr6_1:64183620-64183639 None:intergenic 25.0%
! CTTGCTAAATTTCCATATTT+AGG + chr6_1:64183653-64183672 None:intergenic 25.0%
! GTTATACTTCAGTATATGAA+CGG - chr6_1:64183822-64183841 Msa0891010:intron 25.0%
! GGTTAATATGTCATACTAAA+TGG - chr6_1:64183948-64183967 Msa0891010:CDS 25.0%
! TTATTATTGATGTGTGTTAG+AGG - chr6_1:64184084-64184103 Msa0891010:CDS 25.0%
! TATTTGAGAATTTGGAGAAT+AGG + chr6_1:64184504-64184523 None:intergenic 25.0%
! TCTCCAAATTCTCAAATAAA+TGG - chr6_1:64184506-64184525 Msa0891010:intron 25.0%
! CAACCATTTATTTGAGAATT+TGG + chr6_1:64184512-64184531 None:intergenic 25.0%
!!! TTAAAATTTCCTTTTTTCCC+AGG - chr6_1:64184552-64184571 Msa0891010:intron 25.0%
! ATTTAGTGATGAAACAAAGT+TGG - chr6_1:64184723-64184742 Msa0891010:intron 25.0%
!!! TTTGTTTTGAGTTTAAGGTA+GGG + chr6_1:64184927-64184946 None:intergenic 25.0%
!!! TTTTGTTTTGAGTTTAAGGT+AGG + chr6_1:64184928-64184947 None:intergenic 25.0%
!!! TATTGTACCTTTTTAAGGTT+GGG + chr6_1:64185117-64185136 None:intergenic 25.0%
!!! TTATTGTACCTTTTTAAGGT+TGG + chr6_1:64185118-64185137 None:intergenic 25.0%
! CACTTCAAAAATTAGTTGAA+AGG - chr6_1:64185422-64185441 Msa0891010:intron 25.0%
! AATAAAAACAGAGTCATATG+TGG - chr6_1:64185662-64185681 Msa0891010:intron 25.0%
! AATGATAGTAATATCAAGGA+TGG + chr6_1:64185916-64185935 None:intergenic 25.0%
! TTGCAATTTAAAGATAGGTA+GGG + chr6_1:64185966-64185985 None:intergenic 25.0%
! CAAATATATTGGAAAAAACC+TGG + chr6_1:64186049-64186068 None:intergenic 25.0%
!!! ATTATTTTATAGTTGGGTGA+AGG - chr6_1:64186143-64186162 Msa0891010:intron 25.0%
! TCATCATAATAACATGAACA+TGG - chr6_1:64186227-64186246 Msa0891010:intron 25.0%
! GATATCATTTATCGAAAATG+AGG + chr6_1:64186264-64186283 None:intergenic 25.0%
! CTCAACTTGAAATATTTTGC+AGG + chr6_1:64183501-64183520 None:intergenic 30.0%
AATTTCCATATTTAGGGAGA+TGG + chr6_1:64183646-64183665 None:intergenic 30.0%
!!! ATTCAGTTTTTAGGTTCTCA+TGG - chr6_1:64183758-64183777 Msa0891010:intron 30.0%
!!! TCTATACCGTTTTAGAGATA+GGG + chr6_1:64183977-64183996 None:intergenic 30.0%
!!! ATCTATACCGTTTTAGAGAT+AGG + chr6_1:64183978-64183997 None:intergenic 30.0%
! CTTATGGTTTGTAGAATTCA+CGG + chr6_1:64184288-64184307 None:intergenic 30.0%
TAGATTGAGAAATGCAACTT+AGG + chr6_1:64184319-64184338 None:intergenic 30.0%
CAATTAAGAGCAAGTTTGAT+TGG + chr6_1:64184351-64184370 None:intergenic 30.0%
AACTAGTAGTAGGTGAATTT+GGG + chr6_1:64184882-64184901 None:intergenic 30.0%
GTCAAATCCAGAAAATTGTT+GGG + chr6_1:64184905-64184924 None:intergenic 30.0%
CAAAAACCTCAAAAAGCAAA+AGG - chr6_1:64184998-64185017 Msa0891010:CDS 30.0%
TAATGTTGAGGATCATATCA+TGG - chr6_1:64185032-64185051 Msa0891010:CDS 30.0%
!! TGTTGGTTCAATATTTCAAG+TGG - chr6_1:64185752-64185771 Msa0891010:intron 30.0%
! TAGGGAAATACATGTTGATT+CGG - chr6_1:64185787-64185806 Msa0891010:intron 30.0%
! AATAGTAGTGTTTTACCCTT+TGG - chr6_1:64185885-64185904 Msa0891010:intron 30.0%
GAGCAATGATAGTAATATCA+AGG + chr6_1:64185920-64185939 None:intergenic 30.0%
TGATATTACTATCATTGCTC+AGG - chr6_1:64185920-64185939 Msa0891010:intron 30.0%
GTTGCAATTTAAAGATAGGT+AGG + chr6_1:64185967-64185986 None:intergenic 30.0%
!!! TTTCGCCACTTTTTAACTTT+TGG - chr6_1:64185997-64186016 Msa0891010:intron 30.0%
TGCAGGGATAAATTATGTTT+AGG - chr6_1:64186424-64186443 Msa0891010:intron 30.0%
! AAGTGTTACTGTTGAGACTA+TGG - chr6_1:64183365-64183384 Msa0891010:three_prime_UTR 35.0%
GGGATATTATGTATTAGGAG+AGG + chr6_1:64183615-64183634 None:intergenic 35.0%
AAACTACAACAAATGGAACC+AGG - chr6_1:64183904-64183923 Msa0891010:intron 35.0%
AACTACAACAAATGGAACCA+GGG - chr6_1:64183905-64183924 Msa0891010:intron 35.0%
AATGGAACCAGGGAAAATTA+AGG - chr6_1:64183915-64183934 Msa0891010:intron 35.0%
GAAAATTAAGGATGGAACTC+AGG - chr6_1:64183927-64183946 Msa0891010:intron 35.0%
! TGGAATCCCTATCTCTAAAA+CGG - chr6_1:64183968-64183987 Msa0891010:CDS 35.0%
AACTTAGGACATGAGACTTA+TGG + chr6_1:64184304-64184323 None:intergenic 35.0%
GAGAATTTGGAGAATAGGAA+GGG + chr6_1:64184499-64184518 None:intergenic 35.0%
TGAGAATTTGGAGAATAGGA+AGG + chr6_1:64184500-64184519 None:intergenic 35.0%
!!! TTTCCTTTTTTCCCAGGAAA+TGG - chr6_1:64184558-64184577 Msa0891010:intron 35.0%
! GGAACACAATTTATTTGCTG+AGG - chr6_1:64184582-64184601 Msa0891010:intron 35.0%
AACCTGAATATGCTTGATAC+TGG - chr6_1:64184610-64184629 Msa0891010:intron 35.0%
ACTAGTAGTAGGTGAATTTG+GGG + chr6_1:64184881-64184900 None:intergenic 35.0%
GAACTAGTAGTAGGTGAATT+TGG + chr6_1:64184883-64184902 None:intergenic 35.0%
AATTGTTGGGAACTAGTAGT+AGG + chr6_1:64184892-64184911 None:intergenic 35.0%
! ACTAGTTCCCAACAATTTTC+TGG - chr6_1:64184895-64184914 Msa0891010:CDS 35.0%
GGTCAAATCCAGAAAATTGT+TGG + chr6_1:64184906-64184925 None:intergenic 35.0%
!!! TTCTTGTTTTCCAATTCGGT+AGG + chr6_1:64184970-64184989 None:intergenic 35.0%
TCTTGTTCCCAACCTTAAAA+AGG - chr6_1:64185107-64185126 Msa0891010:CDS 35.0%
GAGCTAGTTAATAGCTATGA+GGG + chr6_1:64185155-64185174 None:intergenic 35.0%
AGAGCTAGTTAATAGCTATG+AGG + chr6_1:64185156-64185175 None:intergenic 35.0%
GGACACTATCAAATACATGA+AGG - chr6_1:64185596-64185615 Msa0891010:intron 35.0%
!! AAGTGGAAGCAAAAGTGTTA+GGG - chr6_1:64185769-64185788 Msa0891010:intron 35.0%
ATCCAATGTAAGGATCACAA+GGG - chr6_1:64185810-64185829 Msa0891010:intron 35.0%
GGGACTTCTAGTCAAAATTA+TGG - chr6_1:64185830-64185849 Msa0891010:intron 35.0%
CGACACCAAAAGTTAAAAAG+TGG + chr6_1:64186005-64186024 None:intergenic 35.0%
! AGTGGTTTGCATCTTCTTAT+AGG + chr6_1:64186293-64186312 None:intergenic 35.0%
TGTTACTGTTGAGACTATGG+AGG - chr6_1:64183368-64183387 Msa0891010:three_prime_UTR 40.0%
GAACCAGGGAAAATTAAGGA+TGG - chr6_1:64183919-64183938 Msa0891010:intron 40.0%
! GTTCCATCCTTAATTTTCCC+TGG + chr6_1:64183925-64183944 None:intergenic 40.0%
TTCGAGATGAGACAGATTGA+TGG - chr6_1:64184032-64184051 Msa0891010:CDS 40.0%
ATTGTGTTCCTCCATTTCCT+GGG + chr6_1:64184572-64184591 None:intergenic 40.0%
AATTGTGTTCCTCCATTTCC+TGG + chr6_1:64184573-64184592 None:intergenic 40.0%
CACCAGTATCAAGCATATTC+AGG + chr6_1:64184615-64184634 None:intergenic 40.0%
GAATATGCTTGATACTGGTG+TGG - chr6_1:64184615-64184634 Msa0891010:intron 40.0%
! AAATGTGTTGCTGAGAGTTG+TGG + chr6_1:64184707-64184726 None:intergenic 40.0%
CTAGTAGTAGGTGAATTTGG+GGG + chr6_1:64184880-64184899 None:intergenic 40.0%
!!! ACGAGACCTTTTGCTTTTTG+AGG + chr6_1:64185007-64185026 None:intergenic 40.0%
GTCTCGTGCTAATAATGTTG+AGG - chr6_1:64185020-64185039 Msa0891010:CDS 40.0%
TGCAAGAGCAATGAAGCTTT+GGG + chr6_1:64185085-64185104 None:intergenic 40.0%
CATATTACACTGCTCACTGA+TGG - chr6_1:64185530-64185549 Msa0891010:intron 40.0%
! GGACAAGTTTTCTGTACTAG+TGG - chr6_1:64185575-64185594 Msa0891010:intron 40.0%
!! GAAGGAGCTTAAAAAGCGTT+TGG - chr6_1:64185614-64185633 Msa0891010:intron 40.0%
ATTGCGCTCATCAAATGATG+AGG + chr6_1:64185724-64185743 None:intergenic 40.0%
!! CAAGTGGAAGCAAAAGTGTT+AGG - chr6_1:64185768-64185787 Msa0891010:intron 40.0%
!! GTTGATTCGGATCCAATGTA+AGG - chr6_1:64185800-64185819 Msa0891010:intron 40.0%
GATCCAATGTAAGGATCACA+AGG - chr6_1:64185809-64185828 Msa0891010:intron 40.0%
TCAAGGATGGAATCTCCAAA+GGG + chr6_1:64185903-64185922 None:intergenic 40.0%
ATCAAGGATGGAATCTCCAA+AGG + chr6_1:64185904-64185923 None:intergenic 40.0%
ACTTGTGAAGAACATACGCA+AGG - chr6_1:64186187-64186206 Msa0891010:intron 40.0%
TAATTTATCCCTGCATCGCA+CGG + chr6_1:64186419-64186438 None:intergenic 40.0%
AAGTATCATCAAGCAGCAGC+TGG - chr6_1:64183412-64183431 Msa0891010:three_prime_UTR 45.0%
CAGCAGCTGGTTATCTGATT+TGG - chr6_1:64183425-64183444 Msa0891010:three_prime_UTR 45.0%
!! AGGAGAGGCATTTGTATGTG+AGG + chr6_1:64183600-64183619 None:intergenic 45.0%
! TTAGGGAGATGGTCGACTTA+GGG + chr6_1:64183635-64183654 None:intergenic 45.0%
! TTTAGGGAGATGGTCGACTT+AGG + chr6_1:64183636-64183655 None:intergenic 45.0%
GTCGACCATCTCCCTAAATA+TGG - chr6_1:64183638-64183657 Msa0891010:exon 45.0%
GAGATGAGACAGATTGATGG+TGG - chr6_1:64184035-64184054 Msa0891010:CDS 45.0%
CCTCCATTTCCTGGGAAAAA+AGG + chr6_1:64184564-64184583 None:intergenic 45.0%
!!! CCTTTTTTCCCAGGAAATGG+AGG - chr6_1:64184561-64184580 Msa0891010:intron 45.0%
TTGGGGGACTGTCAAAAGAT+GGG + chr6_1:64184864-64184883 None:intergenic 45.0%
TTTGGGGGACTGTCAAAAGA+TGG + chr6_1:64184865-64184884 None:intergenic 45.0%
TTCAGTGTCTCCTACCGAAT+TGG - chr6_1:64184957-64184976 Msa0891010:CDS 45.0%
CTGCAAGAGCAATGAAGCTT+TGG + chr6_1:64185086-64185105 None:intergenic 45.0%
!! GAGCGCAATGAAAGTGTTGT+TGG - chr6_1:64185735-64185754 Msa0891010:intron 45.0%
GTCCCTTGTGATCCTTACAT+TGG + chr6_1:64185815-64185834 None:intergenic 45.0%
AATTTATCCCTGCATCGCAC+GGG + chr6_1:64186418-64186437 None:intergenic 45.0%
!!! GTATTTATTTAATTTAAAAA+TGG + chr6_1:64183874-64183893 None:intergenic 5.0%
ACTCGTGACCAAGCCATTGA+TGG - chr6_1:64183999-64184018 Msa0891010:CDS 50.0%
TCTGGTGTCCATCAATGGCT+TGG + chr6_1:64184010-64184029 None:intergenic 50.0%
! GAAGCTCTGGTGTCCATCAA+TGG + chr6_1:64184015-64184034 None:intergenic 50.0%
TCTGTCTCATCTCGAAGCTC+TGG + chr6_1:64184028-64184047 None:intergenic 50.0%
ATCGCTGCAGAAGTCTGGTT+TGG + chr6_1:64185694-64185713 None:intergenic 50.0%
TCATCATCGCTGCAGAAGTC+TGG + chr6_1:64185699-64185718 None:intergenic 50.0%
TGTATCTACCCGTGCGATGC+AGG - chr6_1:64186407-64186426 Msa0891010:intron 55.0%
GTATCTACCCGTGCGATGCA+GGG - chr6_1:64186408-64186427 Msa0891010:intron 55.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 64183321 64186560 64183321 ID=Msa0891010;Name=Msa0891010
chr6_1 mRNA 64183321 64186560 64183321 ID=Msa0891010-mRNA-1;Parent=Msa0891010;Name=Msa0891010-mRNA-1;_AED=0.09;_eAED=0.09;_QI=63|1|1|1|1|1|4|325|355
chr6_1 exon 64183321 64183726 64183321 ID=Msa0891010-mRNA-1:exon:11737;Parent=Msa0891010-mRNA-1
chr6_1 exon 64183940 64184308 64183940 ID=Msa0891010-mRNA-1:exon:11736;Parent=Msa0891010-mRNA-1
chr6_1 exon 64184753 64185307 64184753 ID=Msa0891010-mRNA-1:exon:11735;Parent=Msa0891010-mRNA-1
chr6_1 exon 64186435 64186560 64186435 ID=Msa0891010-mRNA-1:exon:11734;Parent=Msa0891010-mRNA-1
chr6_1 five_prime_UTR 64186498 64186560 64186498 ID=Msa0891010-mRNA-1:five_prime_utr;Parent=Msa0891010-mRNA-1
chr6_1 CDS 64186435 64186497 64186435 ID=Msa0891010-mRNA-1:cds;Parent=Msa0891010-mRNA-1
chr6_1 CDS 64184753 64185307 64184753 ID=Msa0891010-mRNA-1:cds;Parent=Msa0891010-mRNA-1
chr6_1 CDS 64183940 64184308 64183940 ID=Msa0891010-mRNA-1:cds;Parent=Msa0891010-mRNA-1
chr6_1 CDS 64183646 64183726 64183646 ID=Msa0891010-mRNA-1:cds;Parent=Msa0891010-mRNA-1
chr6_1 three_prime_UTR 64183321 64183645 64183321 ID=Msa0891010-mRNA-1:three_prime_utr;Parent=Msa0891010-mRNA-1
Gene Sequence

>Msa0891010

ATGGAGGAAATCAACAGCACAGCTATGAAAGTATCATCAAGCAGCAGCTGGTTATCTGATTTGGAAATGGAGGAACACAATTTATTTGCTGAGGAATGCAACCTGAATATGCTTGATACTGGTGTGGAAGATTTTCTTTCACATGACATAGCGAATGTCTTCCAAGAACAAAATAAACTACAATGTTTAACTTCCACAACTCTCAGCAACACATTTAGTGATGAAACAAAGTTGGATTGTTTTGACTTCGATATTGATAAAACAATTATGGAGATGAAAACAATTGATCATAGTGACAATATCAATGAAACTTTTTCACAAAAACTTTCTTCATCTTTTCAAGTTCAAATCCCATCTTTTGACAGTCCCCCAAATTCACCTACTACTAGTTCCCAACAATTTTCTGGATTTGACCCTACCTTAAACTCAAAACAAAATGAAACAGTTTCAGTGTCTCCTACCGAATTGGAAAACAAGAATAATTCAACAAAAACCTCAAAAAGCAAAAGGTCTCGTGCTAATAATGTTGAGGATCATATCATGGCAGAGAGAAAGCGAAGAGAGAAACTCACCCAAAGCTTCATTGCTCTTGCAGCTCTTGTTCCCAACCTTAAAAAGATGGACAAGTTTTCTGTACTAGTGGACACTATCAAATACATGAAGGAGCTTAAAAAGCGTTTGGAAGTTTTAGAAGAACAAAACAAGAGAATAAAAACAGAGTCATATGTGGTTCTGACCAAACCAGACTTCTGCAGCGATGATGATTCCTCATCATTTGATGAGCGCAATGAAAGTGTTGTTGGTTCAATATTTCAAGTGGAAGCAAAAGTGTTAGGGAAATACATGTTGATTCGGATCCAATGTAAGGATCACAAGGGACTTCTAGTCAAAATTATGGTCGAGATTCAAAGATTTCAACTATGTGTTGTCAATAGTAGTGTTTTACCCTTTGGAGATTCCATCCTTGATATTACTATCATTGCTCAGTTGGGTGAAGGCTACAACTTGAGCATAAAGCAACTTGTGAAGAACATACGCAAGGAAGCATTGAAGTTTATGTCATCATAA

Protein sequence

>Msa0891010

MEEINSTAMKVSSSSSWLSDLEMEEHNLFAEECNLNMLDTGVEDFLSHDIANVFQEQNKLQCLTSTTLSNTFSDETKLDCFDFDIDKTIMEMKTIDHSDNINETFSQKLSSSFQVQIPSFDSPPNSPTTSSQQFSGFDPTLNSKQNETVSVSPTELENKNNSTKTSKSKRSRANNVEDHIMAERKRREKLTQSFIALAALVPNLKKMDKFSVLVDTIKYMKELKKRLEVLEEQNKRIKTESYVVLTKPDFCSDDDSSSFDERNESVVGSIFQVEAKVLGKYMLIRIQCKDHKGLLVKIMVEIQRFQLCVVNSSVLPFGDSILDITIIAQLGEGYNLSIKQLVKNIRKEALKFMSS*