Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0891010 | XP_013443468.2 | 90.529 | 359 | 25 | 2 | 1 | 354 | 1 | 355 | 0.0 | 623 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0891010 | sp|Q9T072|BH025_ARATH | 40.359 | 223 | 122 | 4 | 135 | 353 | 113 | 328 | 1.70e-40 | 148 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0891010 | A0A396J7S7 | 90.529 | 359 | 25 | 2 | 1 | 354 | 1 | 355 | 0.0 | 623 |
Gene ID | Type | Classification |
---|---|---|
Msa0891010 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0007230 | Msa0891010 | 0.812684 | 3.746241e-51 | -8.615850e-47 |
Msa0055590 | Msa0891010 | 0.813854 | 2.073218e-51 | -8.615850e-47 |
Msa0626230 | Msa0891010 | 0.834533 | 2.837386e-56 | -8.615850e-47 |
Msa0691160 | Msa0891010 | 0.815279 | 1.002854e-51 | -8.615850e-47 |
Msa0715310 | Msa0891010 | 0.803687 | 3.095458e-49 | -8.615850e-47 |
Msa0769390 | Msa0891010 | 0.800825 | 1.201554e-48 | -8.615850e-47 |
Msa0782340 | Msa0891010 | 0.807499 | 4.905220e-50 | -8.615850e-47 |
Msa0782970 | Msa0891010 | 0.807089 | 5.992906e-50 | -8.615850e-47 |
Msa0790230 | Msa0891010 | 0.804159 | 2.468991e-49 | -8.615850e-47 |
Msa0792510 | Msa0891010 | 0.803067 | 4.159359e-49 | -8.615850e-47 |
Msa0825620 | Msa0891010 | 0.808055 | 3.736916e-50 | -8.615850e-47 |
Msa0140910 | Msa0891010 | 0.802586 | 5.230073e-49 | -8.615850e-47 |
Msa0233190 | Msa0891010 | 0.811889 | 5.585798e-51 | -8.615850e-47 |
Msa0369360 | Msa0891010 | 0.800593 | 1.339796e-48 | -8.615850e-47 |
Msa0371540 | Msa0891010 | 0.832627 | 8.485524e-56 | -8.615850e-47 |
Msa0416800 | Msa0891010 | 0.828145 | 1.057690e-54 | -8.615850e-47 |
Msa0463460 | Msa0891010 | 0.808295 | 3.323080e-50 | -8.615850e-47 |
Msa0466060 | Msa0891010 | 0.812768 | 3.590854e-51 | -8.615850e-47 |
Msa0256960 | Msa0891010 | 0.842495 | 2.496969e-58 | -8.615850e-47 |
Msa0290650 | Msa0891010 | 0.804825 | 1.793322e-49 | -8.615850e-47 |
Msa0296280 | Msa0891010 | 0.816441 | 5.521596e-52 | -8.615850e-47 |
Msa0304990 | Msa0891010 | 0.800095 | 1.692173e-48 | -8.615850e-47 |
Msa0311580 | Msa0891010 | 0.813626 | 2.327665e-51 | -8.615850e-47 |
Msa0334650 | Msa0891010 | 0.842774 | 2.105934e-58 | -8.615850e-47 |
Msa0509020 | Msa0891010 | 0.805746 | 1.150216e-49 | -8.615850e-47 |
Msa0517340 | Msa0891010 | 0.824091 | 9.740184e-54 | -8.615850e-47 |
Msa0548720 | Msa0891010 | 0.813327 | 2.707920e-51 | -8.615850e-47 |
Msa0847390 | Msa0891010 | 0.806644 | 7.443927e-50 | -8.615850e-47 |
Msa0880080 | Msa0891010 | 0.831002 | 2.136486e-55 | -8.615850e-47 |
Msa0891010 | Msa0902980 | 0.801324 | 9.502048e-49 | -8.615850e-47 |
Msa0891010 | Msa0990920 | 0.979634 | 2.120838e-148 | -8.615850e-47 |
Msa0891010 | Msa1008490 | 0.831535 | 1.580118e-55 | -8.615850e-47 |
Msa0891010 | Msa1009000 | 0.815689 | 8.127366e-52 | -8.615850e-47 |
Msa0891010 | Msa1009020 | 0.802066 | 6.693080e-49 | -8.615850e-47 |
Msa0891010 | Msa1025830 | 0.810207 | 1.292588e-50 | -8.615850e-47 |
Msa0891010 | Msa1098560 | 0.830780 | 2.421313e-55 | -8.615850e-47 |
Msa0891010 | Msa1099030 | 0.812423 | 4.270704e-51 | -8.615850e-47 |
Msa0891010 | Msa1101620 | 0.829572 | 4.776105e-55 | -8.615850e-47 |
Msa0891010 | Msa1125040 | 0.837399 | 5.318613e-57 | -8.615850e-47 |
Msa0891010 | Msa1167400 | 0.831479 | 1.631327e-55 | -8.615850e-47 |
Msa0891010 | Msa1201990 | 0.830999 | 2.139728e-55 | -8.615850e-47 |
Msa0891010 | Msa1271300 | 0.802620 | 5.144611e-49 | -8.615850e-47 |
Msa0891010 | Msa1295010 | 0.821564 | 3.775195e-53 | -8.615850e-47 |
Msa0891010 | Msa1329990 | 0.835265 | 1.855668e-56 | -8.615850e-47 |
Msa0891010 | Msa1373950 | 0.803636 | 3.171261e-49 | -8.615850e-47 |
Msa0891010 | Msa1423080 | 0.828751 | 7.554706e-55 | -8.615850e-47 |
Msa0891010 | Msa1457670 | -0.806636 | 7.471997e-50 | -8.615850e-47 |
Msa0891010 | Msa1465900 | 0.814446 | 1.534675e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0891010 | MtrunA17_Chr2g0307131 | 90.529 | 359 | 25 | 2 | 1 | 354 | 1 | 355 | 0.0 | 623 |
Msa0891010 | MtrunA17_Chr2g0307141 | 85.989 | 364 | 38 | 4 | 1 | 355 | 1 | 360 | 0.0 | 584 |
Msa0891010 | MtrunA17_Chr6g0468491 | 68.452 | 336 | 81 | 5 | 23 | 355 | 1 | 314 | 7.15e-155 | 437 |
Msa0891010 | MtrunA17_Chr4g0033391 | 64.124 | 354 | 91 | 7 | 1 | 353 | 1 | 319 | 1.05e-143 | 409 |
Msa0891010 | MtrunA17_Chr4g0033291 | 63.342 | 371 | 78 | 9 | 1 | 355 | 1 | 329 | 9.80e-136 | 389 |
Msa0891010 | MtrunA17_Chr6g0468461 | 63.218 | 348 | 86 | 8 | 1 | 338 | 1 | 316 | 4.03e-133 | 384 |
Msa0891010 | MtrunA17_Chr4g0054581 | 59.536 | 388 | 115 | 10 | 1 | 355 | 1 | 379 | 5.32e-132 | 382 |
Msa0891010 | MtrunA17_Chr4g0033281 | 61.957 | 368 | 83 | 6 | 1 | 354 | 1 | 325 | 9.28e-132 | 379 |
Msa0891010 | MtrunA17_Chr4g0054621 | 51.762 | 369 | 137 | 11 | 1 | 355 | 1 | 342 | 7.51e-108 | 319 |
Msa0891010 | MtrunA17_Chr7g0225901 | 54.633 | 313 | 64 | 5 | 23 | 330 | 1 | 240 | 3.61e-100 | 296 |
Msa0891010 | MtrunA17_Chr5g0400621 | 54.274 | 234 | 94 | 3 | 133 | 354 | 101 | 333 | 1.37e-66 | 213 |
Msa0891010 | MtrunA17_Chr5g0400641 | 56.250 | 160 | 62 | 2 | 181 | 336 | 1 | 156 | 4.36e-49 | 162 |
Msa0891010 | MtrunA17_Chr2g0280161 | 46.927 | 179 | 94 | 1 | 176 | 353 | 175 | 353 | 4.07e-47 | 163 |
Msa0891010 | MtrunA17_Chr5g0400661 | 36.111 | 360 | 168 | 11 | 13 | 346 | 7 | 330 | 4.56e-47 | 162 |
Msa0891010 | MtrunA17_Chr4g0002801 | 38.400 | 250 | 135 | 4 | 108 | 351 | 95 | 331 | 9.17e-46 | 159 |
Msa0891010 | MtrunA17_Chr4g0002781 | 38.554 | 249 | 136 | 4 | 110 | 351 | 112 | 350 | 7.99e-43 | 152 |
Msa0891010 | MtrunA17_Chr4g0054551 | 45.614 | 171 | 89 | 2 | 176 | 345 | 153 | 320 | 1.12e-42 | 150 |
Msa0891010 | MtrunA17_Chr4g0054561 | 46.784 | 171 | 87 | 2 | 176 | 345 | 153 | 320 | 2.35e-42 | 150 |
Msa0891010 | MtrunA17_Chr4g0049331 | 35.740 | 277 | 151 | 5 | 97 | 346 | 27 | 303 | 1.44e-41 | 147 |
Msa0891010 | MtrunA17_Chr8g0336681 | 33.117 | 308 | 163 | 7 | 80 | 351 | 36 | 336 | 1.51e-41 | 148 |
Msa0891010 | MtrunA17_Chr2g0333621 | 37.344 | 241 | 141 | 4 | 117 | 354 | 82 | 315 | 5.16e-41 | 146 |
Msa0891010 | MtrunA17_Chr2g0333641 | 38.397 | 237 | 128 | 6 | 123 | 345 | 70 | 302 | 9.74e-41 | 145 |
Msa0891010 | MtrunA17_Chr4g0054571 | 46.500 | 200 | 92 | 4 | 158 | 346 | 130 | 325 | 2.27e-40 | 145 |
Msa0891010 | MtrunA17_Chr5g0400671 | 32.492 | 317 | 175 | 6 | 54 | 347 | 20 | 320 | 1.20e-37 | 137 |
Msa0891010 | MtrunA17_Chr2g0333541 | 36.194 | 268 | 154 | 5 | 96 | 349 | 3 | 267 | 1.34e-36 | 133 |
Msa0891010 | MtrunA17_Chr2g0333611 | 33.945 | 218 | 140 | 3 | 136 | 352 | 3 | 217 | 2.11e-36 | 131 |
Msa0891010 | MtrunA17_Chr7g0249811 | 40.513 | 195 | 106 | 2 | 157 | 351 | 145 | 329 | 2.19e-36 | 134 |
Msa0891010 | MtrunA17_Chr4g0002851 | 36.601 | 153 | 65 | 2 | 201 | 346 | 65 | 192 | 5.25e-22 | 92.4 |
Msa0891010 | MtrunA17_Chr4g0002831 | 35.928 | 167 | 79 | 5 | 189 | 346 | 53 | 200 | 9.52e-22 | 91.7 |
Msa0891010 | MtrunA17_Chr7g0233441 | 36.986 | 146 | 82 | 2 | 201 | 346 | 57 | 192 | 1.25e-21 | 91.3 |
Msa0891010 | MtrunA17_Chr1g0185621 | 33.784 | 148 | 78 | 4 | 178 | 311 | 475 | 616 | 1.47e-18 | 87.0 |
Msa0891010 | MtrunA17_Chr8g0366751 | 32.727 | 165 | 97 | 3 | 164 | 314 | 445 | 609 | 2.08e-16 | 80.5 |
Msa0891010 | MtrunA17_Chr8g0346161 | 31.469 | 143 | 87 | 4 | 178 | 314 | 291 | 428 | 5.47e-16 | 79.0 |
Msa0891010 | MtrunA17_Chr5g0411341 | 31.737 | 167 | 96 | 4 | 164 | 314 | 476 | 640 | 1.18e-14 | 75.1 |
Msa0891010 | MtrunA17_Chr7g0275821 | 30.519 | 154 | 99 | 2 | 178 | 331 | 252 | 397 | 3.61e-14 | 73.2 |
Msa0891010 | MtrunA17_Chr8g0365711 | 27.027 | 185 | 108 | 4 | 157 | 327 | 227 | 398 | 3.96e-14 | 73.2 |
Msa0891010 | MtrunA17_Chr7g0260841 | 43.333 | 90 | 42 | 2 | 151 | 231 | 319 | 408 | 2.25e-13 | 71.2 |
Msa0891010 | MtrunA17_Chr8g0346151 | 33.333 | 117 | 68 | 3 | 178 | 287 | 279 | 392 | 3.07e-12 | 67.4 |
Msa0891010 | MtrunA17_Chr1g0211081 | 26.606 | 218 | 128 | 6 | 129 | 314 | 264 | 481 | 3.88e-12 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0891010 | AT4G37850.2 | 40.359 | 223 | 122 | 4 | 135 | 353 | 113 | 328 | 1.72e-41 | 148 |
Msa0891010 | AT4G37850.1 | 40.359 | 223 | 122 | 4 | 135 | 353 | 113 | 328 | 1.72e-41 | 148 |
Msa0891010 | AT2G22750.2 | 43.386 | 189 | 101 | 2 | 162 | 345 | 110 | 297 | 6.37e-37 | 135 |
Msa0891010 | AT2G22760.1 | 33.449 | 287 | 160 | 7 | 82 | 346 | 14 | 291 | 7.45e-37 | 135 |
Msa0891010 | AT2G22750.3 | 43.386 | 189 | 101 | 2 | 162 | 345 | 138 | 325 | 1.19e-36 | 135 |
Msa0891010 | AT2G22750.5 | 43.386 | 189 | 101 | 2 | 162 | 345 | 134 | 321 | 1.20e-36 | 135 |
Msa0891010 | AT2G22750.1 | 43.386 | 189 | 100 | 3 | 162 | 345 | 110 | 296 | 1.11e-35 | 132 |
Msa0891010 | AT2G22750.4 | 43.386 | 189 | 100 | 3 | 162 | 345 | 138 | 324 | 1.80e-35 | 132 |
Msa0891010 | AT2G22760.2 | 32.963 | 270 | 151 | 6 | 82 | 330 | 14 | 274 | 1.37e-32 | 123 |
Msa0891010 | AT2G22770.1 | 33.077 | 260 | 120 | 8 | 116 | 346 | 81 | 315 | 8.52e-32 | 122 |
Msa0891010 | AT5G46760.1 | 32.394 | 213 | 111 | 8 | 147 | 334 | 388 | 592 | 1.69e-19 | 90.1 |
Msa0891010 | AT4G17880.1 | 36.420 | 162 | 85 | 5 | 164 | 311 | 399 | 556 | 6.26e-18 | 85.5 |
Msa0891010 | AT1G32640.1 | 31.447 | 159 | 97 | 4 | 164 | 314 | 435 | 589 | 2.33e-15 | 77.8 |
Msa0891010 | AT1G01260.1 | 29.310 | 174 | 96 | 4 | 157 | 327 | 411 | 560 | 6.13e-14 | 73.6 |
Msa0891010 | AT1G01260.2 | 29.310 | 174 | 96 | 4 | 157 | 327 | 411 | 560 | 6.13e-14 | 73.6 |
Msa0891010 | AT1G01260.3 | 29.310 | 174 | 96 | 4 | 157 | 327 | 411 | 560 | 6.13e-14 | 73.6 |
Msa0891010 | AT2G46510.1 | 45.000 | 80 | 39 | 2 | 164 | 240 | 378 | 455 | 6.65e-14 | 73.2 |
Msa0891010 | AT1G63650.3 | 30.409 | 171 | 92 | 5 | 178 | 326 | 405 | 570 | 8.18e-14 | 73.2 |
Msa0891010 | AT1G63650.1 | 30.409 | 171 | 92 | 5 | 178 | 326 | 405 | 570 | 8.18e-14 | 73.2 |
Msa0891010 | AT1G63650.2 | 30.409 | 171 | 92 | 5 | 178 | 326 | 405 | 570 | 8.18e-14 | 73.2 |
Msa0891010 | AT4G16430.1 | 46.154 | 78 | 39 | 1 | 164 | 238 | 303 | 380 | 1.39e-13 | 72.0 |
Msa0891010 | AT4G09820.1 | 34.127 | 126 | 53 | 3 | 179 | 299 | 364 | 464 | 2.91e-13 | 71.2 |
Msa0891010 | AT5G41315.3 | 30.682 | 176 | 90 | 7 | 178 | 326 | 446 | 616 | 6.03e-12 | 67.4 |
Msa0891010 | AT5G41315.2 | 30.682 | 176 | 90 | 7 | 178 | 326 | 449 | 619 | 6.98e-12 | 67.0 |
Msa0891010 | AT5G41315.1 | 30.682 | 176 | 90 | 7 | 178 | 326 | 441 | 611 | 8.23e-12 | 67.0 |
Msa0891010 | AT4G00870.1 | 32.558 | 129 | 56 | 3 | 179 | 290 | 250 | 364 | 1.12e-11 | 66.2 |
Find 54 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAACTAGTAGTAGGTGAATT+TGG | 0.157544 | 6_1:+64184979 | None:intergenic |
CGATATTGATAAAACAATTA+TGG | 0.241298 | 6_1:-64185100 | Msa0891010:CDS |
AACTAGTAGTAGGTGAATTT+GGG | 0.258364 | 6_1:+64184980 | None:intergenic |
TCTTGTTCCCAACCTTAAAA+AGG | 0.269180 | 6_1:-64184752 | Msa0891010:intron |
AGTGGTTTGCATCTTCTTAT+AGG | 0.285856 | 6_1:+64183569 | None:intergenic |
CAGCAGCTGGTTATCTGATT+TGG | 0.298434 | 6_1:-64186434 | Msa0891010:intron |
CAAGTGGAAGCAAAAGTGTT+AGG | 0.299198 | 6_1:-64184091 | Msa0891010:CDS |
TAAGATAATACTATGTATAT+TGG | 0.331197 | 6_1:-64183525 | Msa0891010:three_prime_UTR |
CACCAGTATCAAGCATATTC+AGG | 0.356769 | 6_1:+64185247 | None:intergenic |
CTGCAAGAGCAATGAAGCTT+TGG | 0.357341 | 6_1:+64184776 | None:intergenic |
TTCAGTGTCTCCTACCGAAT+TGG | 0.361875 | 6_1:-64184902 | Msa0891010:CDS |
AAGTGTTACTGTTGAGACTA+TGG | 0.367734 | 6_1:-64186494 | Msa0891010:exon |
TGTATCTACCCGTGCGATGC+AGG | 0.386085 | 6_1:-64183452 | Msa0891010:three_prime_UTR |
TGCAGGGATAAATTATGTTT+AGG | 0.391523 | 6_1:-64183435 | Msa0891010:three_prime_UTR |
GGGACTTCTAGTCAAAATTA+TGG | 0.406834 | 6_1:-64184029 | Msa0891010:CDS |
TCATCATCGCTGCAGAAGTC+TGG | 0.439235 | 6_1:+64184163 | None:intergenic |
GGTCAAATCCAGAAAATTGT+TGG | 0.450466 | 6_1:+64184956 | None:intergenic |
ATTTAGTGATGAAACAAAGT+TGG | 0.458588 | 6_1:-64185136 | Msa0891010:CDS |
TGCAAGAGCAATGAAGCTTT+GGG | 0.460124 | 6_1:+64184777 | None:intergenic |
AAGTGGAAGCAAAAGTGTTA+GGG | 0.462288 | 6_1:-64184090 | Msa0891010:CDS |
TAGGGAAATACATGTTGATT+CGG | 0.467508 | 6_1:-64184072 | Msa0891010:CDS |
TGATATTACTATCATTGCTC+AGG | 0.480526 | 6_1:-64183939 | Msa0891010:intron |
GTCAAATCCAGAAAATTGTT+GGG | 0.480993 | 6_1:+64184957 | None:intergenic |
GAGCGCAATGAAAGTGTTGT+TGG | 0.490652 | 6_1:-64184124 | Msa0891010:CDS |
ATCGCTGCAGAAGTCTGGTT+TGG | 0.490772 | 6_1:+64184168 | None:intergenic |
AATTGTTGGGAACTAGTAGT+AGG | 0.495232 | 6_1:+64184970 | None:intergenic |
GTTGATTCGGATCCAATGTA+AGG | 0.498122 | 6_1:-64184059 | Msa0891010:CDS |
GTCCCTTGTGATCCTTACAT+TGG | 0.512495 | 6_1:+64184047 | None:intergenic |
AACCTGAATATGCTTGATAC+TGG | 0.514353 | 6_1:-64185249 | Msa0891010:CDS |
GATATCATTTATCGAAAATG+AGG | 0.521059 | 6_1:+64183598 | None:intergenic |
GAGCAATGATAGTAATATCA+AGG | 0.522227 | 6_1:+64183942 | None:intergenic |
GGAACACAATTTATTTGCTG+AGG | 0.543803 | 6_1:-64185277 | Msa0891010:CDS |
TAATTTATCCCTGCATCGCA+CGG | 0.551275 | 6_1:+64183443 | None:intergenic |
TAATGTTGAGGATCATATCA+TGG | 0.558527 | 6_1:-64184827 | Msa0891010:CDS |
AAGTATCATCAAGCAGCAGC+TGG | 0.560203 | 6_1:-64186447 | Msa0891010:CDS |
TCAAGGATGGAATCTCCAAA+GGG | 0.562816 | 6_1:+64183959 | None:intergenic |
GTATCTACCCGTGCGATGCA+GGG | 0.568334 | 6_1:-64183451 | Msa0891010:three_prime_UTR |
GTCTCGTGCTAATAATGTTG+AGG | 0.579610 | 6_1:-64184839 | Msa0891010:CDS |
ATCAAGGATGGAATCTCCAA+AGG | 0.580088 | 6_1:+64183958 | None:intergenic |
AATGATAGTAATATCAAGGA+TGG | 0.583388 | 6_1:+64183946 | None:intergenic |
AAATGTGTTGCTGAGAGTTG+TGG | 0.591764 | 6_1:+64185155 | None:intergenic |
AATTTATCCCTGCATCGCAC+GGG | 0.600301 | 6_1:+64183444 | None:intergenic |
ATTGCGCTCATCAAATGATG+AGG | 0.605739 | 6_1:+64184138 | None:intergenic |
TGTTGGTTCAATATTTCAAG+TGG | 0.607961 | 6_1:-64184107 | Msa0891010:CDS |
GGACACTATCAAATACATGA+AGG | 0.619002 | 6_1:-64184263 | Msa0891010:CDS |
GATCCAATGTAAGGATCACA+AGG | 0.634465 | 6_1:-64184050 | Msa0891010:CDS |
GAATATGCTTGATACTGGTG+TGG | 0.643647 | 6_1:-64185244 | Msa0891010:CDS |
TCATCATAATAACATGAACA+TGG | 0.660733 | 6_1:-64183632 | Msa0891010:exon |
ACTAGTAGTAGGTGAATTTG+GGG | 0.663794 | 6_1:+64184981 | None:intergenic |
ACTTGTGAAGAACATACGCA+AGG | 0.680827 | 6_1:-64183672 | Msa0891010:CDS |
TATATACTGAATTTAAAACA+AGG | 0.682236 | 6_1:+64186516 | None:intergenic |
TGTTACTGTTGAGACTATGG+AGG | 0.705682 | 6_1:-64186491 | Msa0891010:exon |
ATCCAATGTAAGGATCACAA+GGG | 0.757305 | 6_1:-64184049 | Msa0891010:CDS |
CTAGTAGTAGGTGAATTTGG+GGG | 0.786954 | 6_1:+64184982 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GAATATTCTTTATAAAAATA+AGG | - | chr6_1:64184428-64184447 | Msa0891010:intron | 10.0% |
!! | ATAAAAACTAAATATTATCA+AGG | - | chr6_1:64185237-64185256 | Msa0891010:CDS | 10.0% |
!!! | TTCGATAATATATTTTTTTT+TGG | + | chr6_1:64185269-64185288 | None:intergenic | 10.0% |
!! | AAGATTAATATTAAATACAA+TGG | + | chr6_1:64186122-64186141 | None:intergenic | 10.0% |
!!! | AATCTTAATTATTTTATAGT+TGG | - | chr6_1:64186136-64186155 | Msa0891010:intron | 10.0% |
!!! | ATCTTAATTATTTTATAGTT+GGG | - | chr6_1:64186137-64186156 | Msa0891010:intron | 10.0% |
!!! | TATTGTTTTAAAAAATGAAA+TGG | - | chr6_1:64186463-64186482 | Msa0891010:CDS | 10.0% |
!!! | TATATACTGAATTTAAAACA+AGG | + | chr6_1:64183346-64183365 | None:intergenic | 15.0% |
!! | AAAAAAAAAACTACAACAAA+TGG | - | chr6_1:64183897-64183916 | Msa0891010:intron | 15.0% |
!! | TAAATATATCAGTTATTGAA+TGG | - | chr6_1:64184176-64184195 | Msa0891010:CDS | 15.0% |
!! | CAACATACAAATTATATTAT+GGG | + | chr6_1:64184265-64184284 | None:intergenic | 15.0% |
!! | TTGTGTAAAATTATATTAGA+TGG | - | chr6_1:64185554-64185573 | Msa0891010:intron | 15.0% |
!!! | AAATTAAAGTATTTTATTCC+AGG | - | chr6_1:64186028-64186047 | Msa0891010:intron | 15.0% |
!! | AATATATCAAGCAAATATAT+TGG | + | chr6_1:64186060-64186079 | None:intergenic | 15.0% |
!! | TAAGATAATACTATGTATAT+TGG | - | chr6_1:64186334-64186353 | Msa0891010:intron | 15.0% |
!!! | TTTTATCGTTTTTCTTTTTT+TGG | - | chr6_1:64186377-64186396 | Msa0891010:intron | 15.0% |
!! | GTTATAAACATACTACAAAA+TGG | + | chr6_1:64183548-64183567 | None:intergenic | 20.0% |
!! | TTGCTAAATTTCCATATTTA+GGG | + | chr6_1:64183652-64183671 | None:intergenic | 20.0% |
!!! | TAGTAAACAATTCAGTTTTT+AGG | - | chr6_1:64183749-64183768 | Msa0891010:intron | 20.0% |
!! | GCTAAAAAAAATTGATTATG+TGG | - | chr6_1:64184057-64184076 | Msa0891010:CDS | 20.0% |
!! | TTATTTAAGAAACATTGCTA+GGG | + | chr6_1:64184129-64184148 | None:intergenic | 20.0% |
!! | ATTATTTAAGAAACATTGCT+AGG | + | chr6_1:64184130-64184149 | None:intergenic | 20.0% |
!!! | TTATATTATGGGTTTTTCTA+TGG | + | chr6_1:64184254-64184273 | None:intergenic | 20.0% |
!! | GCAACATACAAATTATATTA+TGG | + | chr6_1:64184266-64184285 | None:intergenic | 20.0% |
!!! | TGTAGTTACTTATTTTCAAA+AGG | - | chr6_1:64184464-64184483 | Msa0891010:intron | 20.0% |
!!! | ATTGTAGTTTATTTTGTTCT+TGG | + | chr6_1:64184675-64184694 | None:intergenic | 20.0% |
!! | CGATATTGATAAAACAATTA+TGG | - | chr6_1:64184759-64184778 | Msa0891010:CDS | 20.0% |
!!! | TTCATTTTGTTTTGAGTTTA+AGG | + | chr6_1:64184932-64184951 | None:intergenic | 20.0% |
!!! | ATTATTCTTGTTTTCCAATT+CGG | + | chr6_1:64184974-64184993 | None:intergenic | 20.0% |
!!! | TTACTTATTGTACCTTTTTA+AGG | + | chr6_1:64185122-64185141 | None:intergenic | 20.0% |
!! | AATATATTATCGAACAATAG+AGG | - | chr6_1:64185275-64185294 | Msa0891010:CDS | 20.0% |
!!! | TATGCAGTTTAAAGTTATTT+TGG | - | chr6_1:64185382-64185401 | Msa0891010:intron | 20.0% |
!!! | TTTTGTTGCAATTTAAAGAT+AGG | + | chr6_1:64185971-64185990 | None:intergenic | 20.0% |
!!! | ATTTTGTTGTCTTTGAATTT+TGG | - | chr6_1:64186081-64186100 | Msa0891010:intron | 20.0% |
!! | AAGAATTTAAAAAGAAACAG+TGG | + | chr6_1:64186311-64186330 | None:intergenic | 20.0% |
! | ACTTAGGGATATTATGTATT+AGG | + | chr6_1:64183620-64183639 | None:intergenic | 25.0% |
! | CTTGCTAAATTTCCATATTT+AGG | + | chr6_1:64183653-64183672 | None:intergenic | 25.0% |
! | GTTATACTTCAGTATATGAA+CGG | - | chr6_1:64183822-64183841 | Msa0891010:intron | 25.0% |
! | GGTTAATATGTCATACTAAA+TGG | - | chr6_1:64183948-64183967 | Msa0891010:CDS | 25.0% |
! | TTATTATTGATGTGTGTTAG+AGG | - | chr6_1:64184084-64184103 | Msa0891010:CDS | 25.0% |
! | TATTTGAGAATTTGGAGAAT+AGG | + | chr6_1:64184504-64184523 | None:intergenic | 25.0% |
! | TCTCCAAATTCTCAAATAAA+TGG | - | chr6_1:64184506-64184525 | Msa0891010:intron | 25.0% |
! | CAACCATTTATTTGAGAATT+TGG | + | chr6_1:64184512-64184531 | None:intergenic | 25.0% |
!!! | TTAAAATTTCCTTTTTTCCC+AGG | - | chr6_1:64184552-64184571 | Msa0891010:intron | 25.0% |
! | ATTTAGTGATGAAACAAAGT+TGG | - | chr6_1:64184723-64184742 | Msa0891010:intron | 25.0% |
!!! | TTTGTTTTGAGTTTAAGGTA+GGG | + | chr6_1:64184927-64184946 | None:intergenic | 25.0% |
!!! | TTTTGTTTTGAGTTTAAGGT+AGG | + | chr6_1:64184928-64184947 | None:intergenic | 25.0% |
!!! | TATTGTACCTTTTTAAGGTT+GGG | + | chr6_1:64185117-64185136 | None:intergenic | 25.0% |
!!! | TTATTGTACCTTTTTAAGGT+TGG | + | chr6_1:64185118-64185137 | None:intergenic | 25.0% |
! | CACTTCAAAAATTAGTTGAA+AGG | - | chr6_1:64185422-64185441 | Msa0891010:intron | 25.0% |
! | AATAAAAACAGAGTCATATG+TGG | - | chr6_1:64185662-64185681 | Msa0891010:intron | 25.0% |
! | AATGATAGTAATATCAAGGA+TGG | + | chr6_1:64185916-64185935 | None:intergenic | 25.0% |
! | TTGCAATTTAAAGATAGGTA+GGG | + | chr6_1:64185966-64185985 | None:intergenic | 25.0% |
! | CAAATATATTGGAAAAAACC+TGG | + | chr6_1:64186049-64186068 | None:intergenic | 25.0% |
!!! | ATTATTTTATAGTTGGGTGA+AGG | - | chr6_1:64186143-64186162 | Msa0891010:intron | 25.0% |
! | TCATCATAATAACATGAACA+TGG | - | chr6_1:64186227-64186246 | Msa0891010:intron | 25.0% |
! | GATATCATTTATCGAAAATG+AGG | + | chr6_1:64186264-64186283 | None:intergenic | 25.0% |
! | CTCAACTTGAAATATTTTGC+AGG | + | chr6_1:64183501-64183520 | None:intergenic | 30.0% |
AATTTCCATATTTAGGGAGA+TGG | + | chr6_1:64183646-64183665 | None:intergenic | 30.0% | |
!!! | ATTCAGTTTTTAGGTTCTCA+TGG | - | chr6_1:64183758-64183777 | Msa0891010:intron | 30.0% |
!!! | TCTATACCGTTTTAGAGATA+GGG | + | chr6_1:64183977-64183996 | None:intergenic | 30.0% |
!!! | ATCTATACCGTTTTAGAGAT+AGG | + | chr6_1:64183978-64183997 | None:intergenic | 30.0% |
! | CTTATGGTTTGTAGAATTCA+CGG | + | chr6_1:64184288-64184307 | None:intergenic | 30.0% |
TAGATTGAGAAATGCAACTT+AGG | + | chr6_1:64184319-64184338 | None:intergenic | 30.0% | |
CAATTAAGAGCAAGTTTGAT+TGG | + | chr6_1:64184351-64184370 | None:intergenic | 30.0% | |
AACTAGTAGTAGGTGAATTT+GGG | + | chr6_1:64184882-64184901 | None:intergenic | 30.0% | |
GTCAAATCCAGAAAATTGTT+GGG | + | chr6_1:64184905-64184924 | None:intergenic | 30.0% | |
CAAAAACCTCAAAAAGCAAA+AGG | - | chr6_1:64184998-64185017 | Msa0891010:CDS | 30.0% | |
TAATGTTGAGGATCATATCA+TGG | - | chr6_1:64185032-64185051 | Msa0891010:CDS | 30.0% | |
!! | TGTTGGTTCAATATTTCAAG+TGG | - | chr6_1:64185752-64185771 | Msa0891010:intron | 30.0% |
! | TAGGGAAATACATGTTGATT+CGG | - | chr6_1:64185787-64185806 | Msa0891010:intron | 30.0% |
! | AATAGTAGTGTTTTACCCTT+TGG | - | chr6_1:64185885-64185904 | Msa0891010:intron | 30.0% |
GAGCAATGATAGTAATATCA+AGG | + | chr6_1:64185920-64185939 | None:intergenic | 30.0% | |
TGATATTACTATCATTGCTC+AGG | - | chr6_1:64185920-64185939 | Msa0891010:intron | 30.0% | |
GTTGCAATTTAAAGATAGGT+AGG | + | chr6_1:64185967-64185986 | None:intergenic | 30.0% | |
!!! | TTTCGCCACTTTTTAACTTT+TGG | - | chr6_1:64185997-64186016 | Msa0891010:intron | 30.0% |
TGCAGGGATAAATTATGTTT+AGG | - | chr6_1:64186424-64186443 | Msa0891010:intron | 30.0% | |
! | AAGTGTTACTGTTGAGACTA+TGG | - | chr6_1:64183365-64183384 | Msa0891010:three_prime_UTR | 35.0% |
GGGATATTATGTATTAGGAG+AGG | + | chr6_1:64183615-64183634 | None:intergenic | 35.0% | |
AAACTACAACAAATGGAACC+AGG | - | chr6_1:64183904-64183923 | Msa0891010:intron | 35.0% | |
AACTACAACAAATGGAACCA+GGG | - | chr6_1:64183905-64183924 | Msa0891010:intron | 35.0% | |
AATGGAACCAGGGAAAATTA+AGG | - | chr6_1:64183915-64183934 | Msa0891010:intron | 35.0% | |
GAAAATTAAGGATGGAACTC+AGG | - | chr6_1:64183927-64183946 | Msa0891010:intron | 35.0% | |
! | TGGAATCCCTATCTCTAAAA+CGG | - | chr6_1:64183968-64183987 | Msa0891010:CDS | 35.0% |
AACTTAGGACATGAGACTTA+TGG | + | chr6_1:64184304-64184323 | None:intergenic | 35.0% | |
GAGAATTTGGAGAATAGGAA+GGG | + | chr6_1:64184499-64184518 | None:intergenic | 35.0% | |
TGAGAATTTGGAGAATAGGA+AGG | + | chr6_1:64184500-64184519 | None:intergenic | 35.0% | |
!!! | TTTCCTTTTTTCCCAGGAAA+TGG | - | chr6_1:64184558-64184577 | Msa0891010:intron | 35.0% |
! | GGAACACAATTTATTTGCTG+AGG | - | chr6_1:64184582-64184601 | Msa0891010:intron | 35.0% |
AACCTGAATATGCTTGATAC+TGG | - | chr6_1:64184610-64184629 | Msa0891010:intron | 35.0% | |
ACTAGTAGTAGGTGAATTTG+GGG | + | chr6_1:64184881-64184900 | None:intergenic | 35.0% | |
GAACTAGTAGTAGGTGAATT+TGG | + | chr6_1:64184883-64184902 | None:intergenic | 35.0% | |
AATTGTTGGGAACTAGTAGT+AGG | + | chr6_1:64184892-64184911 | None:intergenic | 35.0% | |
! | ACTAGTTCCCAACAATTTTC+TGG | - | chr6_1:64184895-64184914 | Msa0891010:CDS | 35.0% |
GGTCAAATCCAGAAAATTGT+TGG | + | chr6_1:64184906-64184925 | None:intergenic | 35.0% | |
!!! | TTCTTGTTTTCCAATTCGGT+AGG | + | chr6_1:64184970-64184989 | None:intergenic | 35.0% |
TCTTGTTCCCAACCTTAAAA+AGG | - | chr6_1:64185107-64185126 | Msa0891010:CDS | 35.0% | |
GAGCTAGTTAATAGCTATGA+GGG | + | chr6_1:64185155-64185174 | None:intergenic | 35.0% | |
AGAGCTAGTTAATAGCTATG+AGG | + | chr6_1:64185156-64185175 | None:intergenic | 35.0% | |
GGACACTATCAAATACATGA+AGG | - | chr6_1:64185596-64185615 | Msa0891010:intron | 35.0% | |
!! | AAGTGGAAGCAAAAGTGTTA+GGG | - | chr6_1:64185769-64185788 | Msa0891010:intron | 35.0% |
ATCCAATGTAAGGATCACAA+GGG | - | chr6_1:64185810-64185829 | Msa0891010:intron | 35.0% | |
GGGACTTCTAGTCAAAATTA+TGG | - | chr6_1:64185830-64185849 | Msa0891010:intron | 35.0% | |
CGACACCAAAAGTTAAAAAG+TGG | + | chr6_1:64186005-64186024 | None:intergenic | 35.0% | |
! | AGTGGTTTGCATCTTCTTAT+AGG | + | chr6_1:64186293-64186312 | None:intergenic | 35.0% |
TGTTACTGTTGAGACTATGG+AGG | - | chr6_1:64183368-64183387 | Msa0891010:three_prime_UTR | 40.0% | |
GAACCAGGGAAAATTAAGGA+TGG | - | chr6_1:64183919-64183938 | Msa0891010:intron | 40.0% | |
! | GTTCCATCCTTAATTTTCCC+TGG | + | chr6_1:64183925-64183944 | None:intergenic | 40.0% |
TTCGAGATGAGACAGATTGA+TGG | - | chr6_1:64184032-64184051 | Msa0891010:CDS | 40.0% | |
ATTGTGTTCCTCCATTTCCT+GGG | + | chr6_1:64184572-64184591 | None:intergenic | 40.0% | |
AATTGTGTTCCTCCATTTCC+TGG | + | chr6_1:64184573-64184592 | None:intergenic | 40.0% | |
CACCAGTATCAAGCATATTC+AGG | + | chr6_1:64184615-64184634 | None:intergenic | 40.0% | |
GAATATGCTTGATACTGGTG+TGG | - | chr6_1:64184615-64184634 | Msa0891010:intron | 40.0% | |
! | AAATGTGTTGCTGAGAGTTG+TGG | + | chr6_1:64184707-64184726 | None:intergenic | 40.0% |
CTAGTAGTAGGTGAATTTGG+GGG | + | chr6_1:64184880-64184899 | None:intergenic | 40.0% | |
!!! | ACGAGACCTTTTGCTTTTTG+AGG | + | chr6_1:64185007-64185026 | None:intergenic | 40.0% |
GTCTCGTGCTAATAATGTTG+AGG | - | chr6_1:64185020-64185039 | Msa0891010:CDS | 40.0% | |
TGCAAGAGCAATGAAGCTTT+GGG | + | chr6_1:64185085-64185104 | None:intergenic | 40.0% | |
CATATTACACTGCTCACTGA+TGG | - | chr6_1:64185530-64185549 | Msa0891010:intron | 40.0% | |
! | GGACAAGTTTTCTGTACTAG+TGG | - | chr6_1:64185575-64185594 | Msa0891010:intron | 40.0% |
!! | GAAGGAGCTTAAAAAGCGTT+TGG | - | chr6_1:64185614-64185633 | Msa0891010:intron | 40.0% |
ATTGCGCTCATCAAATGATG+AGG | + | chr6_1:64185724-64185743 | None:intergenic | 40.0% | |
!! | CAAGTGGAAGCAAAAGTGTT+AGG | - | chr6_1:64185768-64185787 | Msa0891010:intron | 40.0% |
!! | GTTGATTCGGATCCAATGTA+AGG | - | chr6_1:64185800-64185819 | Msa0891010:intron | 40.0% |
GATCCAATGTAAGGATCACA+AGG | - | chr6_1:64185809-64185828 | Msa0891010:intron | 40.0% | |
TCAAGGATGGAATCTCCAAA+GGG | + | chr6_1:64185903-64185922 | None:intergenic | 40.0% | |
ATCAAGGATGGAATCTCCAA+AGG | + | chr6_1:64185904-64185923 | None:intergenic | 40.0% | |
ACTTGTGAAGAACATACGCA+AGG | - | chr6_1:64186187-64186206 | Msa0891010:intron | 40.0% | |
TAATTTATCCCTGCATCGCA+CGG | + | chr6_1:64186419-64186438 | None:intergenic | 40.0% | |
AAGTATCATCAAGCAGCAGC+TGG | - | chr6_1:64183412-64183431 | Msa0891010:three_prime_UTR | 45.0% | |
CAGCAGCTGGTTATCTGATT+TGG | - | chr6_1:64183425-64183444 | Msa0891010:three_prime_UTR | 45.0% | |
!! | AGGAGAGGCATTTGTATGTG+AGG | + | chr6_1:64183600-64183619 | None:intergenic | 45.0% |
! | TTAGGGAGATGGTCGACTTA+GGG | + | chr6_1:64183635-64183654 | None:intergenic | 45.0% |
! | TTTAGGGAGATGGTCGACTT+AGG | + | chr6_1:64183636-64183655 | None:intergenic | 45.0% |
GTCGACCATCTCCCTAAATA+TGG | - | chr6_1:64183638-64183657 | Msa0891010:exon | 45.0% | |
GAGATGAGACAGATTGATGG+TGG | - | chr6_1:64184035-64184054 | Msa0891010:CDS | 45.0% | |
CCTCCATTTCCTGGGAAAAA+AGG | + | chr6_1:64184564-64184583 | None:intergenic | 45.0% | |
!!! | CCTTTTTTCCCAGGAAATGG+AGG | - | chr6_1:64184561-64184580 | Msa0891010:intron | 45.0% |
TTGGGGGACTGTCAAAAGAT+GGG | + | chr6_1:64184864-64184883 | None:intergenic | 45.0% | |
TTTGGGGGACTGTCAAAAGA+TGG | + | chr6_1:64184865-64184884 | None:intergenic | 45.0% | |
TTCAGTGTCTCCTACCGAAT+TGG | - | chr6_1:64184957-64184976 | Msa0891010:CDS | 45.0% | |
CTGCAAGAGCAATGAAGCTT+TGG | + | chr6_1:64185086-64185105 | None:intergenic | 45.0% | |
!! | GAGCGCAATGAAAGTGTTGT+TGG | - | chr6_1:64185735-64185754 | Msa0891010:intron | 45.0% |
GTCCCTTGTGATCCTTACAT+TGG | + | chr6_1:64185815-64185834 | None:intergenic | 45.0% | |
AATTTATCCCTGCATCGCAC+GGG | + | chr6_1:64186418-64186437 | None:intergenic | 45.0% | |
!!! | GTATTTATTTAATTTAAAAA+TGG | + | chr6_1:64183874-64183893 | None:intergenic | 5.0% |
ACTCGTGACCAAGCCATTGA+TGG | - | chr6_1:64183999-64184018 | Msa0891010:CDS | 50.0% | |
TCTGGTGTCCATCAATGGCT+TGG | + | chr6_1:64184010-64184029 | None:intergenic | 50.0% | |
! | GAAGCTCTGGTGTCCATCAA+TGG | + | chr6_1:64184015-64184034 | None:intergenic | 50.0% |
TCTGTCTCATCTCGAAGCTC+TGG | + | chr6_1:64184028-64184047 | None:intergenic | 50.0% | |
ATCGCTGCAGAAGTCTGGTT+TGG | + | chr6_1:64185694-64185713 | None:intergenic | 50.0% | |
TCATCATCGCTGCAGAAGTC+TGG | + | chr6_1:64185699-64185718 | None:intergenic | 50.0% | |
TGTATCTACCCGTGCGATGC+AGG | - | chr6_1:64186407-64186426 | Msa0891010:intron | 55.0% | |
GTATCTACCCGTGCGATGCA+GGG | - | chr6_1:64186408-64186427 | Msa0891010:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_1 | gene | 64183321 | 64186560 | 64183321 | ID=Msa0891010;Name=Msa0891010 |
chr6_1 | mRNA | 64183321 | 64186560 | 64183321 | ID=Msa0891010-mRNA-1;Parent=Msa0891010;Name=Msa0891010-mRNA-1;_AED=0.09;_eAED=0.09;_QI=63|1|1|1|1|1|4|325|355 |
chr6_1 | exon | 64183321 | 64183726 | 64183321 | ID=Msa0891010-mRNA-1:exon:11737;Parent=Msa0891010-mRNA-1 |
chr6_1 | exon | 64183940 | 64184308 | 64183940 | ID=Msa0891010-mRNA-1:exon:11736;Parent=Msa0891010-mRNA-1 |
chr6_1 | exon | 64184753 | 64185307 | 64184753 | ID=Msa0891010-mRNA-1:exon:11735;Parent=Msa0891010-mRNA-1 |
chr6_1 | exon | 64186435 | 64186560 | 64186435 | ID=Msa0891010-mRNA-1:exon:11734;Parent=Msa0891010-mRNA-1 |
chr6_1 | five_prime_UTR | 64186498 | 64186560 | 64186498 | ID=Msa0891010-mRNA-1:five_prime_utr;Parent=Msa0891010-mRNA-1 |
chr6_1 | CDS | 64186435 | 64186497 | 64186435 | ID=Msa0891010-mRNA-1:cds;Parent=Msa0891010-mRNA-1 |
chr6_1 | CDS | 64184753 | 64185307 | 64184753 | ID=Msa0891010-mRNA-1:cds;Parent=Msa0891010-mRNA-1 |
chr6_1 | CDS | 64183940 | 64184308 | 64183940 | ID=Msa0891010-mRNA-1:cds;Parent=Msa0891010-mRNA-1 |
chr6_1 | CDS | 64183646 | 64183726 | 64183646 | ID=Msa0891010-mRNA-1:cds;Parent=Msa0891010-mRNA-1 |
chr6_1 | three_prime_UTR | 64183321 | 64183645 | 64183321 | ID=Msa0891010-mRNA-1:three_prime_utr;Parent=Msa0891010-mRNA-1 |
Gene Sequence |
Protein sequence |