Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990920 | XP_013443468.2 | 89.415 | 359 | 29 | 2 | 1 | 354 | 1 | 355 | 0.0 | 624 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990920 | sp|Q9T072|BH025_ARATH | 40.359 | 223 | 122 | 4 | 135 | 353 | 113 | 328 | 1.84e-40 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990920 | A0A396J7S7 | 89.415 | 359 | 29 | 2 | 1 | 354 | 1 | 355 | 0.0 | 624 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0990920 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007230 | Msa0990920 | 0.807949 | 3.935771e-50 | -8.615850e-47 |
| Msa0055590 | Msa0990920 | 0.808282 | 3.342840e-50 | -8.615850e-47 |
| Msa0626230 | Msa0990920 | 0.823807 | 1.135123e-53 | -8.615850e-47 |
| Msa0691160 | Msa0990920 | 0.809764 | 1.610062e-50 | -8.615850e-47 |
| Msa0769390 | Msa0990920 | 0.802497 | 5.454717e-49 | -8.615850e-47 |
| Msa0782970 | Msa0990920 | 0.807882 | 4.067280e-50 | -8.615850e-47 |
| Msa0792510 | Msa0990920 | 0.800463 | 1.424698e-48 | -8.615850e-47 |
| Msa0825620 | Msa0990920 | 0.815673 | 8.194767e-52 | -8.615850e-47 |
| Msa0140910 | Msa0990920 | 0.804421 | 2.177397e-49 | -8.615850e-47 |
| Msa0211010 | Msa0990920 | 0.807074 | 6.037231e-50 | -8.615850e-47 |
| Msa0371540 | Msa0990920 | 0.827543 | 1.476184e-54 | -8.615850e-47 |
| Msa0416800 | Msa0990920 | 0.820924 | 5.305193e-53 | -8.615850e-47 |
| Msa0463460 | Msa0990920 | 0.804673 | 1.929372e-49 | -8.615850e-47 |
| Msa0466060 | Msa0990920 | 0.805123 | 1.553914e-49 | -8.615850e-47 |
| Msa0990920 | Msa1008490 | 0.822686 | 2.074741e-53 | -8.615850e-47 |
| Msa0990920 | Msa1009000 | 0.817683 | 2.903758e-52 | -8.615850e-47 |
| Msa0990920 | Msa1009020 | 0.819578 | 1.079063e-52 | -8.615850e-47 |
| Msa0990920 | Msa1025830 | 0.803880 | 2.822173e-49 | -8.615850e-47 |
| Msa0990920 | Msa1098560 | 0.820684 | 6.022475e-53 | -8.615850e-47 |
| Msa0990920 | Msa1099030 | 0.810738 | 9.927329e-51 | -8.615850e-47 |
| Msa0990920 | Msa1101620 | 0.812694 | 3.726351e-51 | -8.615850e-47 |
| Msa0990920 | Msa1125040 | 0.842041 | 3.294325e-58 | -8.615850e-47 |
| Msa0990920 | Msa1167400 | 0.830072 | 3.608559e-55 | -8.615850e-47 |
| Msa0990920 | Msa1201990 | 0.833155 | 6.272841e-56 | -8.615850e-47 |
| Msa0990920 | Msa1295010 | 0.820755 | 5.799045e-53 | -8.615850e-47 |
| Msa0990920 | Msa1329990 | 0.839022 | 2.031515e-57 | -8.615850e-47 |
| Msa0990920 | Msa1423080 | 0.830850 | 2.327323e-55 | -8.615850e-47 |
| Msa0990920 | Msa1457670 | -0.801227 | 9.947854e-49 | -8.615850e-47 |
| Msa0256960 | Msa0990920 | 0.846611 | 1.947664e-59 | -8.615850e-47 |
| Msa0290650 | Msa0990920 | 0.811241 | 7.725359e-51 | -8.615850e-47 |
| Msa0296280 | Msa0990920 | 0.818802 | 1.620313e-52 | -8.615850e-47 |
| Msa0334650 | Msa0990920 | 0.846955 | 1.569235e-59 | -8.615850e-47 |
| Msa0509020 | Msa0990920 | 0.810907 | 9.126774e-51 | -8.615850e-47 |
| Msa0517340 | Msa0990920 | 0.819127 | 1.367508e-52 | -8.615850e-47 |
| Msa0548720 | Msa0990920 | 0.813992 | 1.932778e-51 | -8.615850e-47 |
| Msa0847390 | Msa0990920 | 0.806201 | 9.226694e-50 | -8.615850e-47 |
| Msa0880080 | Msa0990920 | 0.834083 | 3.680210e-56 | -8.615850e-47 |
| Msa0891010 | Msa0990920 | 0.979634 | 2.120838e-148 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990920 | MtrunA17_Chr2g0307131 | 89.415 | 359 | 29 | 2 | 1 | 354 | 1 | 355 | 0.0 | 624 |
| Msa0990920 | MtrunA17_Chr2g0307141 | 85.714 | 364 | 39 | 4 | 1 | 355 | 1 | 360 | 0.0 | 583 |
| Msa0990920 | MtrunA17_Chr6g0468491 | 68.155 | 336 | 82 | 5 | 23 | 355 | 1 | 314 | 4.85e-154 | 435 |
| Msa0990920 | MtrunA17_Chr4g0033391 | 64.407 | 354 | 90 | 8 | 1 | 353 | 1 | 319 | 2.23e-143 | 409 |
| Msa0990920 | MtrunA17_Chr4g0033291 | 63.342 | 371 | 78 | 9 | 1 | 355 | 1 | 329 | 1.17e-135 | 389 |
| Msa0990920 | MtrunA17_Chr6g0468461 | 62.931 | 348 | 87 | 8 | 1 | 338 | 1 | 316 | 3.14e-132 | 381 |
| Msa0990920 | MtrunA17_Chr4g0033281 | 62.228 | 368 | 82 | 7 | 1 | 354 | 1 | 325 | 1.09e-131 | 379 |
| Msa0990920 | MtrunA17_Chr4g0054581 | 59.536 | 388 | 115 | 10 | 1 | 355 | 1 | 379 | 1.99e-131 | 380 |
| Msa0990920 | MtrunA17_Chr4g0054621 | 51.762 | 369 | 137 | 11 | 1 | 355 | 1 | 342 | 6.59e-108 | 319 |
| Msa0990920 | MtrunA17_Chr7g0225901 | 54.633 | 313 | 64 | 5 | 23 | 330 | 1 | 240 | 5.11e-100 | 296 |
| Msa0990920 | MtrunA17_Chr5g0400621 | 54.274 | 234 | 94 | 3 | 133 | 354 | 101 | 333 | 1.22e-66 | 213 |
| Msa0990920 | MtrunA17_Chr5g0400641 | 56.250 | 160 | 62 | 2 | 181 | 336 | 1 | 156 | 4.80e-49 | 162 |
| Msa0990920 | MtrunA17_Chr2g0280161 | 46.927 | 179 | 94 | 1 | 176 | 353 | 175 | 353 | 3.91e-47 | 163 |
| Msa0990920 | MtrunA17_Chr5g0400661 | 36.111 | 360 | 168 | 11 | 13 | 346 | 7 | 330 | 5.07e-47 | 162 |
| Msa0990920 | MtrunA17_Chr4g0002801 | 38.400 | 250 | 135 | 4 | 108 | 351 | 95 | 331 | 1.03e-45 | 159 |
| Msa0990920 | MtrunA17_Chr4g0002781 | 38.554 | 249 | 136 | 4 | 110 | 351 | 112 | 350 | 8.33e-43 | 152 |
| Msa0990920 | MtrunA17_Chr4g0054551 | 45.614 | 171 | 89 | 2 | 176 | 345 | 153 | 320 | 1.24e-42 | 150 |
| Msa0990920 | MtrunA17_Chr4g0054561 | 46.784 | 171 | 87 | 2 | 176 | 345 | 153 | 320 | 2.73e-42 | 150 |
| Msa0990920 | MtrunA17_Chr8g0336681 | 33.117 | 308 | 163 | 7 | 80 | 351 | 36 | 336 | 1.52e-41 | 148 |
| Msa0990920 | MtrunA17_Chr4g0049331 | 35.740 | 277 | 151 | 5 | 97 | 346 | 27 | 303 | 1.55e-41 | 147 |
| Msa0990920 | MtrunA17_Chr2g0333621 | 37.344 | 241 | 141 | 4 | 117 | 354 | 82 | 315 | 4.65e-41 | 146 |
| Msa0990920 | MtrunA17_Chr2g0333641 | 38.397 | 237 | 128 | 6 | 123 | 345 | 70 | 302 | 8.86e-41 | 145 |
| Msa0990920 | MtrunA17_Chr4g0054571 | 46.500 | 200 | 92 | 4 | 158 | 346 | 130 | 325 | 2.44e-40 | 145 |
| Msa0990920 | MtrunA17_Chr5g0400671 | 32.492 | 317 | 175 | 6 | 54 | 347 | 20 | 320 | 1.48e-37 | 137 |
| Msa0990920 | MtrunA17_Chr2g0333541 | 36.194 | 268 | 154 | 5 | 96 | 349 | 3 | 267 | 1.34e-36 | 133 |
| Msa0990920 | MtrunA17_Chr7g0249811 | 40.513 | 195 | 106 | 2 | 157 | 351 | 145 | 329 | 2.19e-36 | 134 |
| Msa0990920 | MtrunA17_Chr2g0333611 | 33.945 | 218 | 140 | 3 | 136 | 352 | 3 | 217 | 2.55e-36 | 131 |
| Msa0990920 | MtrunA17_Chr4g0002851 | 36.601 | 153 | 65 | 2 | 201 | 346 | 65 | 192 | 5.41e-22 | 92.4 |
| Msa0990920 | MtrunA17_Chr4g0002831 | 35.928 | 167 | 79 | 5 | 189 | 346 | 53 | 200 | 1.00e-21 | 91.7 |
| Msa0990920 | MtrunA17_Chr7g0233441 | 36.986 | 146 | 82 | 2 | 201 | 346 | 57 | 192 | 1.32e-21 | 91.3 |
| Msa0990920 | MtrunA17_Chr1g0185621 | 33.784 | 148 | 78 | 4 | 178 | 311 | 475 | 616 | 1.53e-18 | 87.0 |
| Msa0990920 | MtrunA17_Chr8g0366751 | 32.727 | 165 | 97 | 3 | 164 | 314 | 445 | 609 | 2.35e-16 | 80.5 |
| Msa0990920 | MtrunA17_Chr8g0346161 | 31.469 | 143 | 87 | 4 | 178 | 314 | 291 | 428 | 5.08e-16 | 79.0 |
| Msa0990920 | MtrunA17_Chr5g0411341 | 31.737 | 167 | 96 | 4 | 164 | 314 | 476 | 640 | 1.19e-14 | 75.1 |
| Msa0990920 | MtrunA17_Chr7g0275821 | 30.519 | 154 | 99 | 2 | 178 | 331 | 252 | 397 | 3.41e-14 | 73.2 |
| Msa0990920 | MtrunA17_Chr8g0365711 | 27.027 | 185 | 108 | 4 | 157 | 327 | 227 | 398 | 4.42e-14 | 72.8 |
| Msa0990920 | MtrunA17_Chr7g0260841 | 43.333 | 90 | 42 | 2 | 151 | 231 | 319 | 408 | 2.29e-13 | 70.9 |
| Msa0990920 | MtrunA17_Chr8g0346151 | 33.333 | 117 | 68 | 3 | 178 | 287 | 279 | 392 | 3.16e-12 | 67.4 |
| Msa0990920 | MtrunA17_Chr1g0211081 | 26.606 | 218 | 128 | 6 | 129 | 314 | 264 | 481 | 3.77e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990920 | AT4G37850.2 | 40.359 | 223 | 122 | 4 | 135 | 353 | 113 | 328 | 1.88e-41 | 148 |
| Msa0990920 | AT4G37850.1 | 40.359 | 223 | 122 | 4 | 135 | 353 | 113 | 328 | 1.88e-41 | 148 |
| Msa0990920 | AT2G22750.2 | 43.386 | 189 | 101 | 2 | 162 | 345 | 110 | 297 | 6.92e-37 | 135 |
| Msa0990920 | AT2G22760.1 | 33.449 | 287 | 160 | 7 | 82 | 346 | 14 | 291 | 7.76e-37 | 135 |
| Msa0990920 | AT2G22750.3 | 43.386 | 189 | 101 | 2 | 162 | 345 | 138 | 325 | 1.04e-36 | 135 |
| Msa0990920 | AT2G22750.5 | 43.386 | 189 | 101 | 2 | 162 | 345 | 134 | 321 | 1.19e-36 | 135 |
| Msa0990920 | AT2G22750.1 | 43.386 | 189 | 100 | 3 | 162 | 345 | 110 | 296 | 1.27e-35 | 132 |
| Msa0990920 | AT2G22750.4 | 43.386 | 189 | 100 | 3 | 162 | 345 | 138 | 324 | 1.76e-35 | 132 |
| Msa0990920 | AT2G22760.2 | 32.963 | 270 | 151 | 6 | 82 | 330 | 14 | 274 | 1.35e-32 | 123 |
| Msa0990920 | AT2G22770.1 | 33.077 | 260 | 120 | 8 | 116 | 346 | 81 | 315 | 8.97e-32 | 122 |
| Msa0990920 | AT5G46760.1 | 32.394 | 213 | 111 | 8 | 147 | 334 | 388 | 592 | 1.83e-19 | 90.1 |
| Msa0990920 | AT4G17880.1 | 36.420 | 162 | 85 | 5 | 164 | 311 | 399 | 556 | 6.87e-18 | 85.5 |
| Msa0990920 | AT1G32640.1 | 31.447 | 159 | 97 | 4 | 164 | 314 | 435 | 589 | 2.53e-15 | 77.8 |
| Msa0990920 | AT1G01260.1 | 29.310 | 174 | 96 | 4 | 157 | 327 | 411 | 560 | 6.36e-14 | 73.2 |
| Msa0990920 | AT1G01260.2 | 29.310 | 174 | 96 | 4 | 157 | 327 | 411 | 560 | 6.36e-14 | 73.2 |
| Msa0990920 | AT1G01260.3 | 29.310 | 174 | 96 | 4 | 157 | 327 | 411 | 560 | 6.36e-14 | 73.2 |
| Msa0990920 | AT2G46510.1 | 45.000 | 80 | 39 | 2 | 164 | 240 | 378 | 455 | 6.96e-14 | 73.2 |
| Msa0990920 | AT1G63650.3 | 30.409 | 171 | 92 | 5 | 178 | 326 | 405 | 570 | 8.87e-14 | 72.8 |
| Msa0990920 | AT1G63650.1 | 30.409 | 171 | 92 | 5 | 178 | 326 | 405 | 570 | 8.87e-14 | 72.8 |
| Msa0990920 | AT1G63650.2 | 30.409 | 171 | 92 | 5 | 178 | 326 | 405 | 570 | 8.87e-14 | 72.8 |
| Msa0990920 | AT4G16430.1 | 46.154 | 78 | 39 | 1 | 164 | 238 | 303 | 380 | 1.40e-13 | 72.0 |
| Msa0990920 | AT4G09820.1 | 34.127 | 126 | 53 | 3 | 179 | 299 | 364 | 464 | 2.93e-13 | 71.2 |
| Msa0990920 | AT5G41315.2 | 30.682 | 176 | 90 | 7 | 178 | 326 | 449 | 619 | 6.50e-12 | 67.4 |
| Msa0990920 | AT5G41315.3 | 30.682 | 176 | 90 | 7 | 178 | 326 | 446 | 616 | 6.72e-12 | 67.0 |
| Msa0990920 | AT5G41315.1 | 30.682 | 176 | 90 | 7 | 178 | 326 | 441 | 611 | 8.01e-12 | 67.0 |
| Msa0990920 | AT4G00870.1 | 32.558 | 129 | 56 | 3 | 179 | 290 | 250 | 364 | 1.14e-11 | 66.2 |
Find 54 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTAGTAGTAGGTGAATT+TGG | 0.157544 | 6_4:+53989118 | None:intergenic |
| CGATATTGATAAAACAATTA+TGG | 0.241298 | 6_4:-53989239 | Msa0990920:CDS |
| AACTAGTAGTAGGTGAATTT+GGG | 0.258364 | 6_4:+53989119 | None:intergenic |
| TCTTGTTCCCAACCTTAAAA+AGG | 0.269180 | 6_4:-53988891 | Msa0990920:intron |
| AGTGGTTTGCATCTTCTTAT+AGG | 0.285856 | 6_4:+53987707 | None:intergenic |
| CAGCAGCTGGTTATCTGATT+TGG | 0.298434 | 6_4:-53990571 | Msa0990920:intron |
| CAAGTGGAAGCAAAAGTGTT+AGG | 0.299198 | 6_4:-53988229 | Msa0990920:CDS |
| TAAGATAATACTATGTATAT+TGG | 0.331197 | 6_4:-53987663 | Msa0990920:three_prime_UTR |
| CACCAGTATCAAGCATATTC+AGG | 0.356769 | 6_4:+53989386 | None:intergenic |
| CTGCAAGAGCAATGAAGCTT+TGG | 0.357341 | 6_4:+53988915 | None:intergenic |
| TTCAGTGTCTCCTACCGAAT+TGG | 0.361875 | 6_4:-53989041 | Msa0990920:CDS |
| AAGTGTTACTGTTGAGACTA+TGG | 0.367734 | 6_4:-53990631 | Msa0990920:exon |
| TGTATCTACCCGTGCGATGC+AGG | 0.386085 | 6_4:-53987590 | Msa0990920:three_prime_UTR |
| TGCAGGGATAAATTATGTTT+AGG | 0.391523 | 6_4:-53987573 | Msa0990920:three_prime_UTR |
| GGGACTTCTAGTCAAAATTA+TGG | 0.406834 | 6_4:-53988167 | Msa0990920:CDS |
| TCATCATCGCTGCAGAAGTC+TGG | 0.439235 | 6_4:+53988301 | None:intergenic |
| GGTCAAATCCAGAAAATTGT+TGG | 0.450466 | 6_4:+53989095 | None:intergenic |
| ATTTAGTGATGAAACAAAGT+TGG | 0.458588 | 6_4:-53989275 | Msa0990920:CDS |
| TGCAAGAGCAATGAAGCTTT+GGG | 0.460124 | 6_4:+53988916 | None:intergenic |
| AAGTGGAAGCAAAAGTGTTA+GGG | 0.462288 | 6_4:-53988228 | Msa0990920:CDS |
| TAGGGAAATACATGTTGATT+CGG | 0.467508 | 6_4:-53988210 | Msa0990920:CDS |
| TGATATTACTATCATTGCTC+AGG | 0.480526 | 6_4:-53988077 | Msa0990920:intron |
| GTCAAATCCAGAAAATTGTT+GGG | 0.480993 | 6_4:+53989096 | None:intergenic |
| GAGCGCAATGAAAGTGTTGT+TGG | 0.490652 | 6_4:-53988262 | Msa0990920:CDS |
| ATCGCTGCAGAAGTCTGGTT+TGG | 0.490772 | 6_4:+53988306 | None:intergenic |
| AATTGTTGGGAACTAGTAGT+AGG | 0.495232 | 6_4:+53989109 | None:intergenic |
| GTTGATTCGGATCCAATGTA+AGG | 0.498122 | 6_4:-53988197 | Msa0990920:CDS |
| GTCCCTTGTGATCCTTACAT+TGG | 0.512495 | 6_4:+53988185 | None:intergenic |
| AACCTGAATATGCTTGATAC+TGG | 0.514353 | 6_4:-53989388 | Msa0990920:CDS |
| GATATCATTTATCGAAAATG+AGG | 0.521059 | 6_4:+53987736 | None:intergenic |
| GAGCAATGATAGTAATATCA+AGG | 0.522227 | 6_4:+53988080 | None:intergenic |
| GGAACACAATTTATTTGCTG+AGG | 0.543803 | 6_4:-53989416 | Msa0990920:CDS |
| TAATTTATCCCTGCATCGCA+CGG | 0.551275 | 6_4:+53987581 | None:intergenic |
| TAATGTTGAGGATCATATCA+TGG | 0.558527 | 6_4:-53988966 | Msa0990920:CDS |
| AAGTATCATCAAGCAGCAGC+TGG | 0.560203 | 6_4:-53990584 | Msa0990920:CDS |
| TCAAGGATGGAATCTCCAAA+GGG | 0.562816 | 6_4:+53988097 | None:intergenic |
| GTATCTACCCGTGCGATGCA+GGG | 0.568334 | 6_4:-53987589 | Msa0990920:three_prime_UTR |
| GTCTCGTGCTAATAATGTTG+AGG | 0.579610 | 6_4:-53988978 | Msa0990920:CDS |
| ATCAAGGATGGAATCTCCAA+AGG | 0.580088 | 6_4:+53988096 | None:intergenic |
| AAATGTGTTGCTGAGAGTTG+TGG | 0.582706 | 6_4:+53989294 | None:intergenic |
| AATGATAGTAATATCAAGGA+TGG | 0.583388 | 6_4:+53988084 | None:intergenic |
| AATTTATCCCTGCATCGCAC+GGG | 0.600301 | 6_4:+53987582 | None:intergenic |
| ATTGCGCTCATCAAATGATG+AGG | 0.605739 | 6_4:+53988276 | None:intergenic |
| TGTTGGTTCAATATTTCAAG+TGG | 0.607961 | 6_4:-53988245 | Msa0990920:CDS |
| GGACACTATCAAATACATGA+AGG | 0.619002 | 6_4:-53988401 | Msa0990920:CDS |
| GATCCAATGTAAGGATCACA+AGG | 0.634465 | 6_4:-53988188 | Msa0990920:CDS |
| GAATATGCTTGATACTGGTG+TGG | 0.643647 | 6_4:-53989383 | Msa0990920:CDS |
| TCATCATAATAACATGAACA+TGG | 0.660733 | 6_4:-53987770 | Msa0990920:exon |
| ACTAGTAGTAGGTGAATTTG+GGG | 0.663794 | 6_4:+53989120 | None:intergenic |
| ACTTGTGAAGAACATACGCA+AGG | 0.680827 | 6_4:-53987810 | Msa0990920:CDS |
| TATATACTGAATTTAAAACA+AGG | 0.682236 | 6_4:+53990653 | None:intergenic |
| TGTTACTGTTGAGACTATGG+AGG | 0.705682 | 6_4:-53990628 | Msa0990920:exon |
| ATCCAATGTAAGGATCACAA+GGG | 0.757305 | 6_4:-53988187 | Msa0990920:CDS |
| CTAGTAGTAGGTGAATTTGG+GGG | 0.786954 | 6_4:+53989121 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATATTCTTTATAAAAATA+AGG | - | chr6_4:53988564-53988583 | Msa0990920:intron | 10.0% |
| !! | ATAAAAACTAAATATTATCA+AGG | - | chr6_4:53989373-53989392 | Msa0990920:CDS | 10.0% |
| !!! | TCGATAATATATTTTTTTTT+TGG | + | chr6_4:53989405-53989424 | None:intergenic | 10.0% |
| !! | AAGATTAATATTAAATACAA+TGG | + | chr6_4:53990259-53990278 | None:intergenic | 10.0% |
| !!! | AATCTTAATTATTTTATAGT+TGG | - | chr6_4:53990273-53990292 | Msa0990920:intron | 10.0% |
| !!! | ATCTTAATTATTTTATAGTT+GGG | - | chr6_4:53990274-53990293 | Msa0990920:intron | 10.0% |
| !!! | TATTGTTTTAAAAAATGAAA+TGG | - | chr6_4:53990600-53990619 | Msa0990920:CDS | 10.0% |
| !!! | TATATACTGAATTTAAAACA+AGG | + | chr6_4:53987484-53987503 | None:intergenic | 15.0% |
| !! | AAAAAAAAAACTACAACAAA+TGG | - | chr6_4:53988034-53988053 | Msa0990920:intron | 15.0% |
| !! | TAAATATATCAGTTATTGAA+TGG | - | chr6_4:53988313-53988332 | Msa0990920:CDS | 15.0% |
| !! | CAACATACAAATTATATTAT+GGG | + | chr6_4:53988402-53988421 | None:intergenic | 15.0% |
| !! | TTGTGTAAAATTATATTAGA+TGG | - | chr6_4:53989691-53989710 | Msa0990920:intron | 15.0% |
| !!! | AAATTAAAGTATTTTATTCC+AGG | - | chr6_4:53990165-53990184 | Msa0990920:intron | 15.0% |
| !! | AATATATCAAGCAAATATAT+TGG | + | chr6_4:53990197-53990216 | None:intergenic | 15.0% |
| !! | TAAGATAATACTATGTATAT+TGG | - | chr6_4:53990471-53990490 | Msa0990920:intron | 15.0% |
| !!! | TTTTATCGTTTTTCTTTTTT+TGG | - | chr6_4:53990514-53990533 | Msa0990920:intron | 15.0% |
| !! | GTTATAAACATACTACAAAA+TGG | + | chr6_4:53987686-53987705 | None:intergenic | 20.0% |
| !! | TTGCTAAATTTCCATATTTA+GGG | + | chr6_4:53987790-53987809 | None:intergenic | 20.0% |
| !!! | TAGTAAACAATTCAGTTTTT+AGG | - | chr6_4:53987887-53987906 | Msa0990920:intron | 20.0% |
| !! | GCTAAAAAAAATTGATTATG+TGG | - | chr6_4:53988194-53988213 | Msa0990920:CDS | 20.0% |
| !! | TTATTTAAGAAACATTGCTA+GGG | + | chr6_4:53988266-53988285 | None:intergenic | 20.0% |
| !! | ATTATTTAAGAAACATTGCT+AGG | + | chr6_4:53988267-53988286 | None:intergenic | 20.0% |
| !!! | TTATATTATGGGTTTTTCTA+TGG | + | chr6_4:53988391-53988410 | None:intergenic | 20.0% |
| !! | GCAACATACAAATTATATTA+TGG | + | chr6_4:53988403-53988422 | None:intergenic | 20.0% |
| !!! | TGTAGTTACTTATTTTCAAA+AGG | - | chr6_4:53988600-53988619 | Msa0990920:intron | 20.0% |
| !!! | ATTGTAGTTTATTTTGTTCT+TGG | + | chr6_4:53988811-53988830 | None:intergenic | 20.0% |
| !! | CGATATTGATAAAACAATTA+TGG | - | chr6_4:53988895-53988914 | Msa0990920:CDS | 20.0% |
| !!! | TTCATTTTGTTTTGAGTTTA+AGG | + | chr6_4:53989068-53989087 | None:intergenic | 20.0% |
| !!! | ATTATTCTTGTTTTCCAATT+CGG | + | chr6_4:53989110-53989129 | None:intergenic | 20.0% |
| !!! | TTACTTATTGTACCTTTTTA+AGG | + | chr6_4:53989258-53989277 | None:intergenic | 20.0% |
| !! | AATATATTATCGAACAATAG+AGG | - | chr6_4:53989412-53989431 | Msa0990920:CDS | 20.0% |
| !!! | TATGCAGTTTAAAGTTATTT+TGG | - | chr6_4:53989519-53989538 | Msa0990920:intron | 20.0% |
| !!! | TTTTGTTGCAATTTAAAGAT+AGG | + | chr6_4:53990108-53990127 | None:intergenic | 20.0% |
| !!! | ATTTTGTTGTCTTTGAATTT+TGG | - | chr6_4:53990218-53990237 | Msa0990920:intron | 20.0% |
| !! | AAGAATTTAAAAAGAAACAG+TGG | + | chr6_4:53990448-53990467 | None:intergenic | 20.0% |
| ! | ACTTAGGGATATTATGTATT+AGG | + | chr6_4:53987758-53987777 | None:intergenic | 25.0% |
| ! | CTTGCTAAATTTCCATATTT+AGG | + | chr6_4:53987791-53987810 | None:intergenic | 25.0% |
| ! | GTTATACTTCAGTATATGAA+CGG | - | chr6_4:53987960-53987979 | Msa0990920:intron | 25.0% |
| ! | GGTTAATATGTCATACTAAA+TGG | - | chr6_4:53988085-53988104 | Msa0990920:CDS | 25.0% |
| ! | TTATTATTGATGTGTGTTAG+AGG | - | chr6_4:53988221-53988240 | Msa0990920:CDS | 25.0% |
| ! | TATTTGAGAATTTGGAGAAT+AGG | + | chr6_4:53988640-53988659 | None:intergenic | 25.0% |
| ! | TCTCCAAATTCTCAAATAAA+TGG | - | chr6_4:53988642-53988661 | Msa0990920:intron | 25.0% |
| ! | CAACCATTTATTTGAGAATT+TGG | + | chr6_4:53988648-53988667 | None:intergenic | 25.0% |
| !!! | TTAAAATTTCCTTTTTTCCC+AGG | - | chr6_4:53988688-53988707 | Msa0990920:intron | 25.0% |
| ! | ATTTAGTGATGAAACAAAGT+TGG | - | chr6_4:53988859-53988878 | Msa0990920:intron | 25.0% |
| !!! | TTTGTTTTGAGTTTAAGGTA+GGG | + | chr6_4:53989063-53989082 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTGAGTTTAAGGT+AGG | + | chr6_4:53989064-53989083 | None:intergenic | 25.0% |
| !!! | TATTGTACCTTTTTAAGGTT+GGG | + | chr6_4:53989253-53989272 | None:intergenic | 25.0% |
| !!! | TTATTGTACCTTTTTAAGGT+TGG | + | chr6_4:53989254-53989273 | None:intergenic | 25.0% |
| ! | CACTTCAAAAATTAGTTGAA+AGG | - | chr6_4:53989559-53989578 | Msa0990920:intron | 25.0% |
| ! | AATAAAAACAGAGTCATATG+TGG | - | chr6_4:53989799-53989818 | Msa0990920:intron | 25.0% |
| ! | AATGATAGTAATATCAAGGA+TGG | + | chr6_4:53990053-53990072 | None:intergenic | 25.0% |
| ! | TTGCAATTTAAAGATAGGTA+GGG | + | chr6_4:53990103-53990122 | None:intergenic | 25.0% |
| ! | CAAATATATTGGAAAAAACC+TGG | + | chr6_4:53990186-53990205 | None:intergenic | 25.0% |
| !!! | ATTATTTTATAGTTGGGTGA+AGG | - | chr6_4:53990280-53990299 | Msa0990920:intron | 25.0% |
| ! | TCATCATAATAACATGAACA+TGG | - | chr6_4:53990364-53990383 | Msa0990920:intron | 25.0% |
| ! | GATATCATTTATCGAAAATG+AGG | + | chr6_4:53990401-53990420 | None:intergenic | 25.0% |
| ! | CTCAACTTGAAATATTTTGC+AGG | + | chr6_4:53987639-53987658 | None:intergenic | 30.0% |
| AATTTCCATATTTAGGGAGA+TGG | + | chr6_4:53987784-53987803 | None:intergenic | 30.0% | |
| !!! | ATTCAGTTTTTAGGTTCTCA+TGG | - | chr6_4:53987896-53987915 | Msa0990920:intron | 30.0% |
| !!! | TCTATACCGTTTTAGAGATA+GGG | + | chr6_4:53988114-53988133 | None:intergenic | 30.0% |
| !!! | ATCTATACCGTTTTAGAGAT+AGG | + | chr6_4:53988115-53988134 | None:intergenic | 30.0% |
| ! | CTTATGGTTTGTAGAATTCA+CGG | + | chr6_4:53988425-53988444 | None:intergenic | 30.0% |
| TAGATTGAGAAATGCAACTT+AGG | + | chr6_4:53988456-53988475 | None:intergenic | 30.0% | |
| CAATTAAGAGCAAGTTTGAT+TGG | + | chr6_4:53988487-53988506 | None:intergenic | 30.0% | |
| AACTAGTAGTAGGTGAATTT+GGG | + | chr6_4:53989018-53989037 | None:intergenic | 30.0% | |
| GTCAAATCCAGAAAATTGTT+GGG | + | chr6_4:53989041-53989060 | None:intergenic | 30.0% | |
| CAAAAACCTCAAAAAGCAAA+AGG | - | chr6_4:53989134-53989153 | Msa0990920:CDS | 30.0% | |
| TAATGTTGAGGATCATATCA+TGG | - | chr6_4:53989168-53989187 | Msa0990920:CDS | 30.0% | |
| !! | TGTTGGTTCAATATTTCAAG+TGG | - | chr6_4:53989889-53989908 | Msa0990920:intron | 30.0% |
| ! | TAGGGAAATACATGTTGATT+CGG | - | chr6_4:53989924-53989943 | Msa0990920:intron | 30.0% |
| ! | AATAGTAGTGTTTTACCCTT+TGG | - | chr6_4:53990022-53990041 | Msa0990920:intron | 30.0% |
| GAGCAATGATAGTAATATCA+AGG | + | chr6_4:53990057-53990076 | None:intergenic | 30.0% | |
| TGATATTACTATCATTGCTC+AGG | - | chr6_4:53990057-53990076 | Msa0990920:intron | 30.0% | |
| GTTGCAATTTAAAGATAGGT+AGG | + | chr6_4:53990104-53990123 | None:intergenic | 30.0% | |
| !!! | TTTCGCCACTTTTTAACTTT+TGG | - | chr6_4:53990134-53990153 | Msa0990920:intron | 30.0% |
| TGACACCAAAAGTTAAAAAG+TGG | + | chr6_4:53990142-53990161 | None:intergenic | 30.0% | |
| TGCAGGGATAAATTATGTTT+AGG | - | chr6_4:53990561-53990580 | Msa0990920:intron | 30.0% | |
| ! | AAGTGTTACTGTTGAGACTA+TGG | - | chr6_4:53987503-53987522 | Msa0990920:three_prime_UTR | 35.0% |
| GGGATATTATGTATTAGGAG+AGG | + | chr6_4:53987753-53987772 | None:intergenic | 35.0% | |
| AAACTACAACAAATGGAACC+AGG | - | chr6_4:53988041-53988060 | Msa0990920:intron | 35.0% | |
| AACTACAACAAATGGAACCA+GGG | - | chr6_4:53988042-53988061 | Msa0990920:intron | 35.0% | |
| AATGGAACCAGGGAAAATTA+AGG | - | chr6_4:53988052-53988071 | Msa0990920:intron | 35.0% | |
| GAAAATTAAGGATGGAACTC+AGG | - | chr6_4:53988064-53988083 | Msa0990920:intron | 35.0% | |
| ! | TGGAATCCCTATCTCTAAAA+CGG | - | chr6_4:53988105-53988124 | Msa0990920:CDS | 35.0% |
| AACTTAGGACATGAGACTTA+TGG | + | chr6_4:53988441-53988460 | None:intergenic | 35.0% | |
| GAGAATTTGGAGAATAGGAA+GGG | + | chr6_4:53988635-53988654 | None:intergenic | 35.0% | |
| TGAGAATTTGGAGAATAGGA+AGG | + | chr6_4:53988636-53988655 | None:intergenic | 35.0% | |
| !!! | TTTCCTTTTTTCCCAGGAAA+TGG | - | chr6_4:53988694-53988713 | Msa0990920:intron | 35.0% |
| ! | GGAACACAATTTATTTGCTG+AGG | - | chr6_4:53988718-53988737 | Msa0990920:intron | 35.0% |
| AACCTGAATATGCTTGATAC+TGG | - | chr6_4:53988746-53988765 | Msa0990920:intron | 35.0% | |
| ACTAGTAGTAGGTGAATTTG+GGG | + | chr6_4:53989017-53989036 | None:intergenic | 35.0% | |
| GAACTAGTAGTAGGTGAATT+TGG | + | chr6_4:53989019-53989038 | None:intergenic | 35.0% | |
| AATTGTTGGGAACTAGTAGT+AGG | + | chr6_4:53989028-53989047 | None:intergenic | 35.0% | |
| ! | ACTAGTTCCCAACAATTTTC+TGG | - | chr6_4:53989031-53989050 | Msa0990920:CDS | 35.0% |
| GGTCAAATCCAGAAAATTGT+TGG | + | chr6_4:53989042-53989061 | None:intergenic | 35.0% | |
| !!! | TTCTTGTTTTCCAATTCGGT+AGG | + | chr6_4:53989106-53989125 | None:intergenic | 35.0% |
| TCTTGTTCCCAACCTTAAAA+AGG | - | chr6_4:53989243-53989262 | Msa0990920:CDS | 35.0% | |
| GGACACTATCAAATACATGA+AGG | - | chr6_4:53989733-53989752 | Msa0990920:intron | 35.0% | |
| !! | AAGTGGAAGCAAAAGTGTTA+GGG | - | chr6_4:53989906-53989925 | Msa0990920:intron | 35.0% |
| ATCCAATGTAAGGATCACAA+GGG | - | chr6_4:53989947-53989966 | Msa0990920:intron | 35.0% | |
| GGGACTTCTAGTCAAAATTA+TGG | - | chr6_4:53989967-53989986 | Msa0990920:intron | 35.0% | |
| ! | AGTGGTTTGCATCTTCTTAT+AGG | + | chr6_4:53990430-53990449 | None:intergenic | 35.0% |
| TGTTACTGTTGAGACTATGG+AGG | - | chr6_4:53987506-53987525 | Msa0990920:three_prime_UTR | 40.0% | |
| GAACCAGGGAAAATTAAGGA+TGG | - | chr6_4:53988056-53988075 | Msa0990920:intron | 40.0% | |
| ! | GTTCCATCCTTAATTTTCCC+TGG | + | chr6_4:53988062-53988081 | None:intergenic | 40.0% |
| TTCGAGATGAGACAGATTGA+TGG | - | chr6_4:53988169-53988188 | Msa0990920:CDS | 40.0% | |
| ATTGTGTTCCTCCATTTCCT+GGG | + | chr6_4:53988708-53988727 | None:intergenic | 40.0% | |
| AATTGTGTTCCTCCATTTCC+TGG | + | chr6_4:53988709-53988728 | None:intergenic | 40.0% | |
| CACCAGTATCAAGCATATTC+AGG | + | chr6_4:53988751-53988770 | None:intergenic | 40.0% | |
| GAATATGCTTGATACTGGTG+TGG | - | chr6_4:53988751-53988770 | Msa0990920:intron | 40.0% | |
| ! | AAATGTGTTGCTGAGAGTTG+TGG | + | chr6_4:53988843-53988862 | None:intergenic | 40.0% |
| CTAGTAGTAGGTGAATTTGG+GGG | + | chr6_4:53989016-53989035 | None:intergenic | 40.0% | |
| !!! | ACGAGACCTTTTGCTTTTTG+AGG | + | chr6_4:53989143-53989162 | None:intergenic | 40.0% |
| GTCTCGTGCTAATAATGTTG+AGG | - | chr6_4:53989156-53989175 | Msa0990920:CDS | 40.0% | |
| TGCAAGAGCAATGAAGCTTT+GGG | + | chr6_4:53989221-53989240 | None:intergenic | 40.0% | |
| GAGCTAGTTAATAGCTACGA+GGG | + | chr6_4:53989291-53989310 | None:intergenic | 40.0% | |
| AGAGCTAGTTAATAGCTACG+AGG | + | chr6_4:53989292-53989311 | None:intergenic | 40.0% | |
| CATATTACACTGCTCACTGA+TGG | - | chr6_4:53989667-53989686 | Msa0990920:intron | 40.0% | |
| ! | GGACAAGTTTTCTGTACTAG+TGG | - | chr6_4:53989712-53989731 | Msa0990920:intron | 40.0% |
| !! | GAAGGAGCTTAAAAAGCGTT+TGG | - | chr6_4:53989751-53989770 | Msa0990920:intron | 40.0% |
| ATTGCGCTCATCAAATGATG+AGG | + | chr6_4:53989861-53989880 | None:intergenic | 40.0% | |
| !! | CAAGTGGAAGCAAAAGTGTT+AGG | - | chr6_4:53989905-53989924 | Msa0990920:intron | 40.0% |
| !! | GTTGATTCGGATCCAATGTA+AGG | - | chr6_4:53989937-53989956 | Msa0990920:intron | 40.0% |
| GATCCAATGTAAGGATCACA+AGG | - | chr6_4:53989946-53989965 | Msa0990920:intron | 40.0% | |
| TCAAGGATGGAATCTCCAAA+GGG | + | chr6_4:53990040-53990059 | None:intergenic | 40.0% | |
| ATCAAGGATGGAATCTCCAA+AGG | + | chr6_4:53990041-53990060 | None:intergenic | 40.0% | |
| ACTTGTGAAGAACATACGCA+AGG | - | chr6_4:53990324-53990343 | Msa0990920:intron | 40.0% | |
| TAATTTATCCCTGCATCGCA+CGG | + | chr6_4:53990556-53990575 | None:intergenic | 40.0% | |
| AAGTATCATCAAGCAGCAGC+TGG | - | chr6_4:53987550-53987569 | Msa0990920:three_prime_UTR | 45.0% | |
| CAGCAGCTGGTTATCTGATT+TGG | - | chr6_4:53987563-53987582 | Msa0990920:three_prime_UTR | 45.0% | |
| !! | AGGAGAGGCATTTGTATGTG+AGG | + | chr6_4:53987738-53987757 | None:intergenic | 45.0% |
| ! | TTAGGGAGATGGTCGACTTA+GGG | + | chr6_4:53987773-53987792 | None:intergenic | 45.0% |
| ! | TTTAGGGAGATGGTCGACTT+AGG | + | chr6_4:53987774-53987793 | None:intergenic | 45.0% |
| GTCGACCATCTCCCTAAATA+TGG | - | chr6_4:53987776-53987795 | Msa0990920:exon | 45.0% | |
| GAGATGAGACAGATTGATGG+TGG | - | chr6_4:53988172-53988191 | Msa0990920:CDS | 45.0% | |
| CCTCCATTTCCTGGGAAAAA+AGG | + | chr6_4:53988700-53988719 | None:intergenic | 45.0% | |
| !!! | CCTTTTTTCCCAGGAAATGG+AGG | - | chr6_4:53988697-53988716 | Msa0990920:intron | 45.0% |
| TTGGGGGACTGTCAAAAGAT+GGG | + | chr6_4:53989000-53989019 | None:intergenic | 45.0% | |
| TTTGGGGGACTGTCAAAAGA+TGG | + | chr6_4:53989001-53989020 | None:intergenic | 45.0% | |
| TTCAGTGTCTCCTACCGAAT+TGG | - | chr6_4:53989093-53989112 | Msa0990920:CDS | 45.0% | |
| CTGCAAGAGCAATGAAGCTT+TGG | + | chr6_4:53989222-53989241 | None:intergenic | 45.0% | |
| !! | GAGCGCAATGAAAGTGTTGT+TGG | - | chr6_4:53989872-53989891 | Msa0990920:intron | 45.0% |
| GTCCCTTGTGATCCTTACAT+TGG | + | chr6_4:53989952-53989971 | None:intergenic | 45.0% | |
| AATTTATCCCTGCATCGCAC+GGG | + | chr6_4:53990555-53990574 | None:intergenic | 45.0% | |
| !!! | GTATTTATTTAATTTAAAAA+TGG | + | chr6_4:53988012-53988031 | None:intergenic | 5.0% |
| ACTCGTGACCAAGCCATTGA+TGG | - | chr6_4:53988136-53988155 | Msa0990920:CDS | 50.0% | |
| TCTGGTGTCCATCAATGGCT+TGG | + | chr6_4:53988147-53988166 | None:intergenic | 50.0% | |
| ! | GAAGCTCTGGTGTCCATCAA+TGG | + | chr6_4:53988152-53988171 | None:intergenic | 50.0% |
| TCTGTCTCATCTCGAAGCTC+TGG | + | chr6_4:53988165-53988184 | None:intergenic | 50.0% | |
| ATCGCTGCAGAAGTCTGGTT+TGG | + | chr6_4:53989831-53989850 | None:intergenic | 50.0% | |
| TCATCATCGCTGCAGAAGTC+TGG | + | chr6_4:53989836-53989855 | None:intergenic | 50.0% | |
| TGTATCTACCCGTGCGATGC+AGG | - | chr6_4:53990544-53990563 | Msa0990920:intron | 55.0% | |
| GTATCTACCCGTGCGATGCA+GGG | - | chr6_4:53990545-53990564 | Msa0990920:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 53987459 | 53990697 | 53987459 | ID=Msa0990920;Name=Msa0990920 |
| chr6_4 | mRNA | 53987459 | 53990697 | 53987459 | ID=Msa0990920-mRNA-1;Parent=Msa0990920;Name=Msa0990920-mRNA-1;_AED=0.09;_eAED=0.09;_QI=63|1|1|1|1|1|4|325|355 |
| chr6_4 | exon | 53987459 | 53987864 | 53987459 | ID=Msa0990920-mRNA-1:exon:11144;Parent=Msa0990920-mRNA-1 |
| chr6_4 | exon | 53988078 | 53988446 | 53988078 | ID=Msa0990920-mRNA-1:exon:11143;Parent=Msa0990920-mRNA-1 |
| chr6_4 | exon | 53988892 | 53989446 | 53988892 | ID=Msa0990920-mRNA-1:exon:11142;Parent=Msa0990920-mRNA-1 |
| chr6_4 | exon | 53990572 | 53990697 | 53990572 | ID=Msa0990920-mRNA-1:exon:11141;Parent=Msa0990920-mRNA-1 |
| chr6_4 | five_prime_UTR | 53990635 | 53990697 | 53990635 | ID=Msa0990920-mRNA-1:five_prime_utr;Parent=Msa0990920-mRNA-1 |
| chr6_4 | CDS | 53990572 | 53990634 | 53990572 | ID=Msa0990920-mRNA-1:cds;Parent=Msa0990920-mRNA-1 |
| chr6_4 | CDS | 53988892 | 53989446 | 53988892 | ID=Msa0990920-mRNA-1:cds;Parent=Msa0990920-mRNA-1 |
| chr6_4 | CDS | 53988078 | 53988446 | 53988078 | ID=Msa0990920-mRNA-1:cds;Parent=Msa0990920-mRNA-1 |
| chr6_4 | CDS | 53987784 | 53987864 | 53987784 | ID=Msa0990920-mRNA-1:cds;Parent=Msa0990920-mRNA-1 |
| chr6_4 | three_prime_UTR | 53987459 | 53987783 | 53987459 | ID=Msa0990920-mRNA-1:three_prime_utr;Parent=Msa0990920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
