Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257430 | XP_003596634.1 | 75.931 | 403 | 58 | 4 | 1 | 376 | 1 | 391 | 0.0 | 566 |
| Msa0257430 | XP_003596634.1 | 92.593 | 54 | 4 | 0 | 338 | 391 | 470 | 523 | 4.28e-21 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257430 | sp|Q6NQ81|PP304_ARATH | 35.692 | 325 | 193 | 4 | 62 | 385 | 79 | 388 | 6.86e-57 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257430 | G7IJL5 | 75.931 | 403 | 58 | 4 | 1 | 376 | 1 | 391 | 0.0 | 566 |
| Msa0257430 | G7IJL5 | 92.593 | 54 | 4 | 0 | 338 | 391 | 470 | 523 | 2.05e-21 | 107 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0257430 | Msa0260760 | 0.852470 | 4.521858e-61 | -8.615850e-47 |
| Msa0257430 | Msa0269820 | 0.854901 | 9.036366e-62 | -8.615850e-47 |
| Msa0257430 | Msa0356560 | 0.807707 | 4.432021e-50 | -8.615850e-47 |
| Msa0257430 | Msa0432770 | 0.826147 | 3.181157e-54 | -8.615850e-47 |
| Msa0257430 | Msa0850960 | 0.800138 | 1.658534e-48 | -8.615850e-47 |
| Msa0257430 | Msa1371430 | 0.801930 | 7.137456e-49 | -8.615850e-47 |
| Msa0257430 | Msa1415640 | 0.803072 | 4.150961e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257430 | MtrunA17_Chr2g0319471 | 75.931 | 403 | 58 | 4 | 1 | 376 | 1 | 391 | 0.0 | 566 |
| Msa0257430 | MtrunA17_Chr2g0319471 | 92.593 | 54 | 4 | 0 | 338 | 391 | 470 | 523 | 3.94e-25 | 107 |
| Msa0257430 | MtrunA17_Chr4g0041921 | 50.347 | 288 | 140 | 1 | 62 | 349 | 97 | 381 | 7.08e-91 | 291 |
| Msa0257430 | MtrunA17_Chr4g0041891 | 48.198 | 222 | 112 | 1 | 94 | 315 | 100 | 318 | 2.68e-63 | 206 |
| Msa0257430 | MtrunA17_Chr7g0215611 | 37.658 | 316 | 169 | 7 | 79 | 384 | 49 | 346 | 1.73e-56 | 191 |
| Msa0257430 | MtrunA17_Chr7g0223561 | 46.471 | 170 | 82 | 6 | 184 | 349 | 13 | 177 | 1.80e-33 | 127 |
| Msa0257430 | MtrunA17_Chr7g0223591 | 43.523 | 193 | 99 | 7 | 162 | 349 | 94 | 281 | 1.04e-32 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257430 | AT4G04790.3 | 35.692 | 325 | 193 | 4 | 62 | 385 | 75 | 384 | 6.93e-58 | 202 |
| Msa0257430 | AT4G04790.1 | 35.692 | 325 | 193 | 4 | 62 | 385 | 79 | 388 | 6.98e-58 | 202 |
| Msa0257430 | AT4G21880.1 | 34.576 | 295 | 179 | 3 | 83 | 376 | 118 | 399 | 9.07e-49 | 177 |
| Msa0257430 | AT4G21880.2 | 34.576 | 295 | 179 | 3 | 83 | 376 | 74 | 355 | 9.89e-49 | 176 |
| Msa0257430 | AT4G04790.2 | 35.135 | 259 | 156 | 1 | 127 | 385 | 5 | 251 | 2.26e-45 | 166 |
Find 91 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGCAGAAAATTATTTAT+TGG | 0.184539 | 2_2:-53234021 | Msa0257430:intron |
| GGGCGATATGTTTGCTCTTC+TGG | 0.189121 | 2_2:+53234781 | None:intergenic |
| TGAACGGAAGGAGAATATTT+TGG | 0.198209 | 2_2:-53233985 | Msa0257430:CDS |
| CTCTATAGCGAAGGTATTTC+AGG | 0.204333 | 2_2:-53233919 | Msa0257430:CDS |
| GTTCCTTCATTAAATCAAAA+AGG | 0.268049 | 2_2:+53234815 | None:intergenic |
| CACTTGCTTTGAAGTCTAAA+AGG | 0.279870 | 2_2:+53233856 | None:intergenic |
| TACATATACCCCTCTTATTA+AGG | 0.287708 | 2_2:+53230849 | None:intergenic |
| AGAAGAATGAAGGTTGAATT+TGG | 0.290693 | 2_2:+53236263 | None:intergenic |
| ACCCAGTCTTGCAGTTGAAT+TGG | 0.318926 | 2_2:+53234681 | None:intergenic |
| GACATTGCAATTGAAGAAAT+GGG | 0.333617 | 2_2:-53234850 | Msa0257430:CDS |
| AGACATTGCAATTGAAGAAA+TGG | 0.334762 | 2_2:-53234851 | Msa0257430:CDS |
| TCCCAATTCAACTGCAAGAC+TGG | 0.342568 | 2_2:-53234683 | Msa0257430:CDS |
| GATTTCCTTACCGATAAATC+TGG | 0.343525 | 2_2:+53233464 | None:intergenic |
| TTTGGAGGTGTTGGAAATCA+TGG | 0.355242 | 2_2:-53233967 | Msa0257430:CDS |
| CATGCAAGTTTGCCGATGAT+TGG | 0.365015 | 2_2:+53230990 | None:intergenic |
| AATTCATTATTAAGAGTAAG+AGG | 0.368961 | 2_2:+53230622 | None:intergenic |
| GGCATTGGGAAGACTACTAT+TGG | 0.381092 | 2_2:-53233898 | Msa0257430:CDS |
| CTTCATCGAAACTCTGATTC+AGG | 0.384389 | 2_2:-53236172 | Msa0257430:intron |
| TGAAGGATAAGCTTGGTCTT+TGG | 0.385335 | 2_2:-53230951 | Msa0257430:CDS |
| AGCATTATGTGAATTATCAT+TGG | 0.388644 | 2_2:+53230882 | None:intergenic |
| CCCAGTCTTGCAGTTGAATT+GGG | 0.389256 | 2_2:+53234682 | None:intergenic |
| AGTCAGCATTCCAGATTTAT+CGG | 0.389720 | 2_2:-53233474 | Msa0257430:intron |
| ATATTACTCTGAGGTACGTT+TGG | 0.413517 | 2_2:+53235096 | None:intergenic |
| AGCGAAGGTATTTCAGGCAT+TGG | 0.426028 | 2_2:-53233913 | Msa0257430:CDS |
| CCTTGAGTTGTTTGATAAAG+TGG | 0.426773 | 2_2:-53234950 | Msa0257430:CDS |
| TTTCAATTAAGCGGCGAAAA+CGG | 0.431589 | 2_2:+53235004 | None:intergenic |
| AAAAGGAGCTCCTCTGCAAC+AGG | 0.440881 | 2_2:+53233873 | None:intergenic |
| TCGTAGAAATTGTTGTTTGT+GGG | 0.445232 | 2_2:+53230768 | None:intergenic |
| CTGTTTCTGTAATGTAGAAA+TGG | 0.449806 | 2_2:+53236400 | None:intergenic |
| GCGAAGGTATTTCAGGCATT+GGG | 0.450482 | 2_2:-53233912 | Msa0257430:CDS |
| CATCATCTTAAACTATAAGA+TGG | 0.453630 | 2_2:+53230664 | None:intergenic |
| GAATGAGGCTCCTTAATAAG+AGG | 0.454545 | 2_2:-53230859 | Msa0257430:exon |
| GTGCTGGTGTACATACAAAT+TGG | 0.458212 | 2_2:-53230792 | Msa0257430:three_prime_UTR |
| ATCATCTTAAACTATAAGAT+GGG | 0.468445 | 2_2:+53230665 | None:intergenic |
| CAGAGTTTCGATGAAGGTTG+AGG | 0.470953 | 2_2:+53236179 | None:intergenic |
| ACTTTGCTACTACCAACAAT+AGG | 0.471995 | 2_2:-53230814 | Msa0257430:three_prime_UTR |
| GAAAGTTGTGCAAAGATACT+AGG | 0.472120 | 2_2:-53234985 | Msa0257430:CDS |
| TTCGTAGAAATTGTTGTTTG+TGG | 0.476336 | 2_2:+53230767 | None:intergenic |
| CTTTCTTTCAAGAGGGTGAA+GGG | 0.493951 | 2_2:+53230725 | None:intergenic |
| ATTCATTATTAAGAGTAAGA+GGG | 0.494703 | 2_2:+53230623 | None:intergenic |
| CCCAATTCAACTGCAAGACT+GGG | 0.500332 | 2_2:-53234682 | Msa0257430:CDS |
| AAATTTGCATGGGTAAAGCT+AGG | 0.502554 | 2_2:-53234888 | Msa0257430:CDS |
| GCATTGTATCCTTTCACGCC+TGG | 0.508185 | 2_2:+53234919 | None:intergenic |
| TGCAAATAGTTCTAATAATG+TGG | 0.508819 | 2_2:+53236310 | None:intergenic |
| CCACTTTATCAAACAACTCA+AGG | 0.516462 | 2_2:+53234950 | None:intergenic |
| TTAGAAATGAAGGATAAGCT+TGG | 0.520450 | 2_2:-53230958 | Msa0257430:CDS |
| CTGAATCAGAGTTTCGATGA+AGG | 0.521340 | 2_2:+53236173 | None:intergenic |
| TGCAATTGAAGAAATGGGGA+AGG | 0.531771 | 2_2:-53234845 | Msa0257430:CDS |
| CTGTCATATTATCAAAGAAG+AGG | 0.532204 | 2_2:-53234707 | Msa0257430:CDS |
| GTGGGTGAATGTGTACGAAA+GGG | 0.534678 | 2_2:+53236285 | None:intergenic |
| TCAATTGTATACAAAAGAAG+TGG | 0.536661 | 2_2:+53234760 | None:intergenic |
| CAATCATCGGCAAACTTGCA+TGG | 0.537585 | 2_2:-53230989 | Msa0257430:CDS |
| TGGCTCTTTGTGAGAGTGAA+CGG | 0.537633 | 2_2:-53234001 | Msa0257430:CDS |
| TGCATTGGTAGAAATTTGCA+TGG | 0.541268 | 2_2:-53234899 | Msa0257430:CDS |
| AATTCACATAATGCTGAATG+AGG | 0.542846 | 2_2:-53230874 | Msa0257430:exon |
| TCTTTCTTTCAAGAGGGTGA+AGG | 0.544322 | 2_2:+53230724 | None:intergenic |
| ACACTTACCGTAGAAAATAG+AGG | 0.544534 | 2_2:+53235916 | None:intergenic |
| GTATACAATTGACATGGGTA+TGG | 0.544759 | 2_2:-53234749 | Msa0257430:CDS |
| CTTGAGTTGTTTGATAAAGT+GGG | 0.545096 | 2_2:-53234949 | Msa0257430:CDS |
| TTGCACAACTTTCAATTAAG+CGG | 0.546213 | 2_2:+53234995 | None:intergenic |
| GGACGAAAACCAGGCGTGAA+AGG | 0.549368 | 2_2:-53234928 | Msa0257430:CDS |
| TGTACACCAGCACCTATTGT+TGG | 0.550756 | 2_2:+53230802 | None:intergenic |
| ATCTGTTGGCTCTATAGCGA+AGG | 0.552442 | 2_2:-53233928 | Msa0257430:CDS |
| GATAAAGTGGGACGAAAACC+AGG | 0.553212 | 2_2:-53234937 | Msa0257430:CDS |
| TGGGTGAATGTGTACGAAAG+GGG | 0.556977 | 2_2:+53236286 | None:intergenic |
| AATTTGCATGGGTAAAGCTA+GGG | 0.557559 | 2_2:-53234887 | Msa0257430:CDS |
| CTACTACCAACAATAGGTGC+TGG | 0.558631 | 2_2:-53230808 | Msa0257430:three_prime_UTR |
| TTATCATTGGCATTTGCAGA+AGG | 0.563671 | 2_2:+53230895 | None:intergenic |
| GATGAAGGTTGAGGCTTGCG+AGG | 0.573152 | 2_2:+53236188 | None:intergenic |
| GACTGTGTAACTAGCAATGA+AGG | 0.573585 | 2_2:+53233493 | None:intergenic |
| GGTGGGTGAATGTGTACGAA+AGG | 0.576735 | 2_2:+53236284 | None:intergenic |
| AATGAGGCTCCTTAATAAGA+GGG | 0.586870 | 2_2:-53230858 | Msa0257430:exon |
| CGTGAAAGGATACAATGCAT+TGG | 0.602128 | 2_2:-53234914 | Msa0257430:CDS |
| GAATGAAGGTTGAATTTGGT+GGG | 0.605142 | 2_2:+53236267 | None:intergenic |
| GGGTGAATGTGTACGAAAGG+GGG | 0.611422 | 2_2:+53236287 | None:intergenic |
| AGAGTAATATATCATTGCGA+AGG | 0.611702 | 2_2:-53235083 | Msa0257430:CDS |
| AAGAGTCAGAAACCAATCAT+CGG | 0.615923 | 2_2:-53231002 | Msa0257430:CDS |
| TGCAGATGAATTGTCTGAAG+CGG | 0.616945 | 2_2:-53235954 | Msa0257430:intron |
| AGAATGAAGGTTGAATTTGG+TGG | 0.631495 | 2_2:+53236266 | None:intergenic |
| TCTTTGTGAGAGTGAACGGA+AGG | 0.632162 | 2_2:-53233997 | Msa0257430:CDS |
| TTTGATTTAATGAAGGAACA+AGG | 0.634361 | 2_2:-53234811 | Msa0257430:CDS |
| TCATCTTAAACTATAAGATG+GGG | 0.634826 | 2_2:+53230666 | None:intergenic |
| CAATTGTATACAAAAGAAGT+GGG | 0.639916 | 2_2:+53234761 | None:intergenic |
| ACTATTGGAACCTGTTGCAG+AGG | 0.644044 | 2_2:-53233883 | Msa0257430:CDS |
| CGCAATGATATATTACTCTG+AGG | 0.647892 | 2_2:+53235087 | None:intergenic |
| GCATTGGTAGAAATTTGCAT+GGG | 0.653918 | 2_2:-53234898 | Msa0257430:CDS |
| ACATTGCAATTGAAGAAATG+GGG | 0.655227 | 2_2:-53234849 | Msa0257430:CDS |
| GTTACTATGAAATGATGCTG+TGG | 0.658555 | 2_2:-53234660 | Msa0257430:CDS |
| TGCAAAGATACTAGGAACTG+AGG | 0.673859 | 2_2:-53234977 | Msa0257430:CDS |
| CACTTTATCAAACAACTCAA+GGG | 0.689617 | 2_2:+53234951 | None:intergenic |
| ATGAGGCTCCTTAATAAGAG+GGG | 0.691913 | 2_2:-53230857 | Msa0257430:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAAACTGAATTTTTTT+GGG | - | chr2_2:53230912-53230931 | Msa0257430:CDS | 10.0% |
| !! | ATTATAGTTAATTTATTCAT+AGG | + | chr2_2:53231471-53231490 | None:intergenic | 10.0% |
| !! | ATGAATTGTAATTAATATAG+TGG | + | chr2_2:53230881-53230900 | None:intergenic | 15.0% |
| !!! | GAATAAAAACTGAATTTTTT+TGG | - | chr2_2:53230911-53230930 | Msa0257430:CDS | 15.0% |
| !! | TTATATTGAAGAAAAAAATC+TGG | - | chr2_2:53230972-53230991 | Msa0257430:CDS | 15.0% |
| !! | TATATTGAAGAAAAAAATCT+GGG | - | chr2_2:53230973-53230992 | Msa0257430:CDS | 15.0% |
| !! | TAATAATGAAGAAAAAATTC+AGG | - | chr2_2:53232390-53232409 | Msa0257430:intron | 15.0% |
| !!! | TAATTTTCTTACAAATGTAA+TGG | + | chr2_2:53232709-53232728 | None:intergenic | 15.0% |
| !!! | TTTTTATTTTACACTAACAT+TGG | - | chr2_2:53235322-53235341 | Msa0257430:intron | 15.0% |
| !!! | TTCAGTTTTTATTCATTTTC+TGG | + | chr2_2:53230905-53230924 | None:intergenic | 20.0% |
| !! | ATAGTTAATTTATTCATAGG+AGG | + | chr2_2:53231468-53231487 | None:intergenic | 20.0% |
| !!! | GTTTGTCATAATTTATTTCT+TGG | - | chr2_2:53232505-53232524 | Msa0257430:intron | 20.0% |
| !!! | TTAACAGATATTTTGTTTCA+AGG | - | chr2_2:53232945-53232964 | Msa0257430:intron | 20.0% |
| !!! | TAATTTTCTGCAACATAAAT+TGG | + | chr2_2:53232993-53233012 | None:intergenic | 20.0% |
| !! | TGTTGCAGAAAATTATTTAT+TGG | - | chr2_2:53232998-53233017 | Msa0257430:intron | 20.0% |
| !! | GCATTAATTGACATAAATTA+AGG | - | chr2_2:53233304-53233323 | Msa0257430:intron | 20.0% |
| !!! | GTTTTTAGAGTTTATTATGA+TGG | - | chr2_2:53233400-53233419 | Msa0257430:intron | 20.0% |
| !!! | TATCTTTCTTTTTATAGACA+AGG | + | chr2_2:53234896-53234915 | None:intergenic | 20.0% |
| !! | ATATACACAACTTACTTTAA+TGG | + | chr2_2:53234990-53235009 | None:intergenic | 20.0% |
| !! | TAAGTTGTGTATATTTAAGT+TGG | - | chr2_2:53234996-53235015 | Msa0257430:CDS | 20.0% |
| !!! | AAGTTGTGTATATTTAAGTT+GGG | - | chr2_2:53234997-53235016 | Msa0257430:CDS | 20.0% |
| !! | GAAGATAAAGTAAATTTATG+GGG | + | chr2_2:53235042-53235061 | None:intergenic | 20.0% |
| !! | GGAAGATAAAGTAAATTTAT+GGG | + | chr2_2:53235043-53235062 | None:intergenic | 20.0% |
| !! | AGGAAGATAAAGTAAATTTA+TGG | + | chr2_2:53235044-53235063 | None:intergenic | 20.0% |
| !! | TCATACAATTTGCATAAAAA+GGG | + | chr2_2:53235499-53235518 | None:intergenic | 20.0% |
| !! | TTCATACAATTTGCATAAAA+AGG | + | chr2_2:53235500-53235519 | None:intergenic | 20.0% |
| !! | ATCATCTTAAACTATAAGAT+GGG | + | chr2_2:53236357-53236376 | None:intergenic | 20.0% |
| !! | ATTCATTATTAAGAGTAAGA+GGG | + | chr2_2:53236399-53236418 | None:intergenic | 20.0% |
| !! | AATTCATTATTAAGAGTAAG+AGG | + | chr2_2:53236400-53236419 | None:intergenic | 20.0% |
| !!! | TGCAAATAGTTCTAATAATG+TGG | + | chr2_2:53230712-53230731 | None:intergenic | 25.0% |
| ! | ATGAAAAAGAAGAAGAATGA+AGG | + | chr2_2:53230769-53230788 | None:intergenic | 25.0% |
| !!! | ATTTTGACCAATTACGTTAA+TGG | - | chr2_2:53230943-53230962 | Msa0257430:CDS | 25.0% |
| ! | ACAATAACCATTAACGTAAT+TGG | + | chr2_2:53230953-53230972 | None:intergenic | 25.0% |
| ! | GTATTGTTCTTACTTATTTC+AGG | - | chr2_2:53231818-53231837 | Msa0257430:intron | 25.0% |
| !!! | TCACCTTTTTGATTTAATGA+AGG | - | chr2_2:53232201-53232220 | Msa0257430:intron | 25.0% |
| ! | GTTCCTTCATTAAATCAAAA+AGG | + | chr2_2:53232207-53232226 | None:intergenic | 25.0% |
| !! | TTTGATTTAATGAAGGAACA+AGG | - | chr2_2:53232208-53232227 | Msa0257430:intron | 25.0% |
| ! | CAATTGTATACAAAAGAAGT+GGG | + | chr2_2:53232261-53232280 | None:intergenic | 25.0% |
| ! | TCAATTGTATACAAAAGAAG+TGG | + | chr2_2:53232262-53232281 | None:intergenic | 25.0% |
| !! | TCTTTTGTATACAATTGACA+TGG | - | chr2_2:53232264-53232283 | Msa0257430:intron | 25.0% |
| !! | CTTTTGTATACAATTGACAT+GGG | - | chr2_2:53232265-53232284 | Msa0257430:intron | 25.0% |
| !!! | AATTTTGAAACATGCATGTT+TGG | + | chr2_2:53232851-53232870 | None:intergenic | 25.0% |
| ! | AAACATGCATGTTTCAAAAT+TGG | - | chr2_2:53232850-53232869 | Msa0257430:intron | 25.0% |
| ! | ATAAAAAAGCTTTCATCTGT+TGG | - | chr2_2:53233077-53233096 | Msa0257430:intron | 25.0% |
| !! | AATAAACTCTAAAAACACAC+TGG | + | chr2_2:53233396-53233415 | None:intergenic | 25.0% |
| ! | TAGAGTTTATTATGATGGTA+TGG | - | chr2_2:53233405-53233424 | Msa0257430:intron | 25.0% |
| ! | GGCAAAAAATTATAGAGAAA+GGG | + | chr2_2:53233445-53233464 | None:intergenic | 25.0% |
| ! | AGGCAAAAAATTATAGAGAA+AGG | + | chr2_2:53233446-53233465 | None:intergenic | 25.0% |
| ! | ATCTCACTAAAATATGTACA+AGG | + | chr2_2:53233466-53233485 | None:intergenic | 25.0% |
| ! | GTTTCTACTCAATATAAATC+AGG | + | chr2_2:53234506-53234525 | None:intergenic | 25.0% |
| !! | TTTTATTCATGCATGTTCTT+TGG | - | chr2_2:53234632-53234651 | Msa0257430:CDS | 25.0% |
| ! | AAGAAAGATAATCTAGTACT+CGG | - | chr2_2:53234906-53234925 | Msa0257430:CDS | 25.0% |
| !! | AAATCTGTTTGTCATGTTTT+TGG | + | chr2_2:53234963-53234982 | None:intergenic | 25.0% |
| !! | TCAAGAATACATTTTTGACA+AGG | + | chr2_2:53235064-53235083 | None:intergenic | 25.0% |
| ! | AACTAAATGATACATCCTAT+TGG | - | chr2_2:53235235-53235254 | Msa0257430:intron | 25.0% |
| !!! | GCTTATGTTGATTTTGATTT+TGG | - | chr2_2:53235377-53235396 | Msa0257430:intron | 25.0% |
| ! | TAAGTTACAAATTGATGAAC+TGG | - | chr2_2:53235437-53235456 | Msa0257430:intron | 25.0% |
| ! | TATGAATGTTCTCTTTGATA+AGG | - | chr2_2:53235461-53235480 | Msa0257430:intron | 25.0% |
| !! | ATTTTTGTCTGCATGATTAT+AGG | - | chr2_2:53235979-53235998 | Msa0257430:intron | 25.0% |
| ! | AGCATTATGTGAATTATCAT+TGG | + | chr2_2:53236140-53236159 | None:intergenic | 25.0% |
| !! | CATTTTTCTTTCTTTCAAGA+GGG | + | chr2_2:53236304-53236323 | None:intergenic | 25.0% |
| !! | ACATTTTTCTTTCTTTCAAG+AGG | + | chr2_2:53236305-53236324 | None:intergenic | 25.0% |
| ! | TCATCTTAAACTATAAGATG+GGG | + | chr2_2:53236356-53236375 | None:intergenic | 25.0% |
| ! | CATCATCTTAAACTATAAGA+TGG | + | chr2_2:53236358-53236377 | None:intergenic | 25.0% |
| !! | CTGTTTCTGTAATGTAGAAA+TGG | + | chr2_2:53230622-53230641 | None:intergenic | 30.0% |
| AGAAGAATGAAGGTTGAATT+TGG | + | chr2_2:53230759-53230778 | None:intergenic | 30.0% | |
| ! | CAGATTTCCTCTATTTTCTA+CGG | - | chr2_2:53231096-53231115 | Msa0257430:intron | 30.0% |
| !!! | TGTATGTGTCTGTTTTGATT+AGG | - | chr2_2:53231147-53231166 | Msa0257430:intron | 30.0% |
| !!! | TGTCTGTTTTGATTAGGATA+TGG | - | chr2_2:53231153-53231172 | Msa0257430:intron | 30.0% |
| ATTCATAGGAGGTGAAAAAA+GGG | + | chr2_2:53231457-53231476 | None:intergenic | 30.0% | |
| TATTCATAGGAGGTGAAAAA+AGG | + | chr2_2:53231458-53231477 | None:intergenic | 30.0% | |
| TACACTAATAGTAGTTCAAG+TGG | + | chr2_2:53231801-53231820 | None:intergenic | 30.0% | |
| TTGTTCTTACTTATTTCAGG+TGG | - | chr2_2:53231821-53231840 | Msa0257430:intron | 30.0% | |
| AGAGTAATATATCATTGCGA+AGG | - | chr2_2:53231936-53231955 | Msa0257430:intron | 30.0% | |
| TTGCACAACTTTCAATTAAG+CGG | + | chr2_2:53232027-53232046 | None:intergenic | 30.0% | |
| CACTTTATCAAACAACTCAA+GGG | + | chr2_2:53232071-53232090 | None:intergenic | 30.0% | |
| ! | CTTGAGTTGTTTGATAAAGT+GGG | - | chr2_2:53232070-53232089 | Msa0257430:intron | 30.0% |
| AGACATTGCAATTGAAGAAA+TGG | - | chr2_2:53232168-53232187 | Msa0257430:intron | 30.0% | |
| GACATTGCAATTGAAGAAAT+GGG | - | chr2_2:53232169-53232188 | Msa0257430:intron | 30.0% | |
| ACATTGCAATTGAAGAAATG+GGG | - | chr2_2:53232170-53232189 | Msa0257430:intron | 30.0% | |
| CTGTCATATTATCAAAGAAG+AGG | - | chr2_2:53232312-53232331 | Msa0257430:intron | 30.0% | |
| TATGCTCAAACTTCTATCAT+TGG | - | chr2_2:53232532-53232551 | Msa0257430:intron | 30.0% | |
| TGAACATCTATGTACAGAAA+AGG | + | chr2_2:53232922-53232941 | None:intergenic | 30.0% | |
| ! | TATCTTCTTGTTGTAACCTT+CGG | - | chr2_2:53233202-53233221 | Msa0257430:intron | 30.0% |
| ! | ATTATTCTTTTCCAAACCGA+AGG | + | chr2_2:53233221-53233240 | None:intergenic | 30.0% |
| AGGCTGCAAATATATTTCTT+TGG | - | chr2_2:53233324-53233343 | Msa0257430:intron | 30.0% | |
| AGTTTATTATGATGGTATGG+AGG | - | chr2_2:53233408-53233427 | Msa0257430:intron | 30.0% | |
| GTTTATTATGATGGTATGGA+GGG | - | chr2_2:53233409-53233428 | Msa0257430:intron | 30.0% | |
| TGCATAAAGTAAGTACTTCA+GGG | + | chr2_2:53233616-53233635 | None:intergenic | 30.0% | |
| GTAACACAAAAATGTGAAAC+TGG | + | chr2_2:53233665-53233684 | None:intergenic | 30.0% | |
| AGAATAGGTCCAAACTTTAA+AGG | + | chr2_2:53233814-53233833 | None:intergenic | 30.0% | |
| !! | TCAGGGTTTAATTTGAGAAT+AGG | + | chr2_2:53233829-53233848 | None:intergenic | 30.0% |
| !!! | TTCGATTTTTTACACAGAAC+TGG | - | chr2_2:53233864-53233883 | Msa0257430:CDS | 30.0% |
| !!! | TCGATTTTTTACACAGAACT+GGG | - | chr2_2:53233865-53233884 | Msa0257430:CDS | 30.0% |
| ! | ATCGAGTAGTATGAGATTTT+CGG | - | chr2_2:53234028-53234047 | Msa0257430:intron | 30.0% |
| !! | GTAGAGTATTTTAAGTAGCT+TGG | - | chr2_2:53234050-53234069 | Msa0257430:intron | 30.0% |
| TTAGAAGCTAGATATCGAAA+GGG | + | chr2_2:53234081-53234100 | None:intergenic | 30.0% | |
| TAGCGCAAGATTATTCAAAA+TGG | - | chr2_2:53234447-53234466 | Msa0257430:intron | 30.0% | |
| ! | GATTATTCAAAATGGCTTGT+TGG | - | chr2_2:53234455-53234474 | Msa0257430:intron | 30.0% |
| ACCTTTGACAAATTTGATTG+TGG | + | chr2_2:53234610-53234629 | None:intergenic | 30.0% | |
| TGTTTCATCTGATGTATTGT+TGG | - | chr2_2:53234705-53234724 | Msa0257430:CDS | 30.0% | |
| ! | TCTTTTTATAGACAAGGTTC+TGG | + | chr2_2:53234890-53234909 | None:intergenic | 30.0% |
| GAATCATCTTGTGTTGTATT+TGG | - | chr2_2:53235274-53235293 | Msa0257430:intron | 30.0% | |
| ! | GTATTTGGAATAAGCGTTTA+AGG | - | chr2_2:53235289-53235308 | Msa0257430:intron | 30.0% |
| ! | TTTTGTGATCCTACATCAAT+TGG | - | chr2_2:53235554-53235573 | Msa0257430:intron | 30.0% |
| !!! | CTAACTTTTGGAATTGAGTT+AGG | - | chr2_2:53235624-53235643 | Msa0257430:intron | 30.0% |
| GCACAAAAACTACAGAATTT+GGG | + | chr2_2:53235656-53235675 | None:intergenic | 30.0% | |
| TGCACAAAAACTACAGAATT+TGG | + | chr2_2:53235657-53235676 | None:intergenic | 30.0% | |
| AACACGATCAAACTTATATG+TGG | - | chr2_2:53235684-53235703 | Msa0257430:intron | 30.0% | |
| !!! | GGAGTTGTTTTTAGAAATGA+AGG | - | chr2_2:53236051-53236070 | Msa0257430:intron | 30.0% |
| TTAGAAATGAAGGATAAGCT+TGG | - | chr2_2:53236061-53236080 | Msa0257430:intron | 30.0% | |
| ! | GAATCGTAACATTTTTGTGA+AGG | + | chr2_2:53236094-53236113 | None:intergenic | 30.0% |
| AATTCACATAATGCTGAATG+AGG | - | chr2_2:53236145-53236164 | Msa0257430:intron | 30.0% | |
| TACATATACCCCTCTTATTA+AGG | + | chr2_2:53236173-53236192 | None:intergenic | 30.0% | |
| !! | TCGTAGAAATTGTTGTTTGT+GGG | + | chr2_2:53236254-53236273 | None:intergenic | 30.0% |
| !! | TTCGTAGAAATTGTTGTTTG+TGG | + | chr2_2:53236255-53236274 | None:intergenic | 30.0% |
| GAATGAAGGTTGAATTTGGT+GGG | + | chr2_2:53230755-53230774 | None:intergenic | 35.0% | |
| AGAATGAAGGTTGAATTTGG+TGG | + | chr2_2:53230756-53230775 | None:intergenic | 35.0% | |
| ACACTTACCGTAGAAAATAG+AGG | + | chr2_2:53231106-53231125 | None:intergenic | 35.0% | |
| TTCATAGGAGGTGAAAAAAG+GGG | + | chr2_2:53231456-53231475 | None:intergenic | 35.0% | |
| !! | CTGTTTTCTTGTTGTCTGAA+AGG | - | chr2_2:53231498-53231517 | Msa0257430:intron | 35.0% |
| AATTGTTAGCGTCATGTTAG+TGG | - | chr2_2:53231543-53231562 | Msa0257430:intron | 35.0% | |
| ACATTGCTGAGTTACTCTAA+GGG | + | chr2_2:53231601-53231620 | None:intergenic | 35.0% | |
| AACATTGCTGAGTTACTCTA+AGG | + | chr2_2:53231602-53231621 | None:intergenic | 35.0% | |
| TACATAGTGTTGTCACATAG+AGG | - | chr2_2:53231686-53231705 | Msa0257430:intron | 35.0% | |
| ATTTGCAGCATCAACTTTCT+CGG | + | chr2_2:53231870-53231889 | None:intergenic | 35.0% | |
| !! | ATATTACTCTGAGGTACGTT+TGG | + | chr2_2:53231926-53231945 | None:intergenic | 35.0% |
| CGCAATGATATATTACTCTG+AGG | + | chr2_2:53231935-53231954 | None:intergenic | 35.0% | |
| TTTCAATTAAGCGGCGAAAA+CGG | + | chr2_2:53232018-53232037 | None:intergenic | 35.0% | |
| GAAAGTTGTGCAAAGATACT+AGG | - | chr2_2:53232034-53232053 | Msa0257430:intron | 35.0% | |
| CCACTTTATCAAACAACTCA+AGG | + | chr2_2:53232072-53232091 | None:intergenic | 35.0% | |
| ! | CCTTGAGTTGTTTGATAAAG+TGG | - | chr2_2:53232069-53232088 | Msa0257430:intron | 35.0% |
| ! | TGCATTGGTAGAAATTTGCA+TGG | - | chr2_2:53232120-53232139 | Msa0257430:intron | 35.0% |
| ! | GCATTGGTAGAAATTTGCAT+GGG | - | chr2_2:53232121-53232140 | Msa0257430:intron | 35.0% |
| AAATTTGCATGGGTAAAGCT+AGG | - | chr2_2:53232131-53232150 | Msa0257430:intron | 35.0% | |
| AATTTGCATGGGTAAAGCTA+GGG | - | chr2_2:53232132-53232151 | Msa0257430:intron | 35.0% | |
| GTATACAATTGACATGGGTA+TGG | - | chr2_2:53232270-53232289 | Msa0257430:intron | 35.0% | |
| GTTACTATGAAATGATGCTG+TGG | - | chr2_2:53232359-53232378 | Msa0257430:intron | 35.0% | |
| !!! | ACACTTTTGATTTACGAGGT+GGG | - | chr2_2:53232449-53232468 | Msa0257430:intron | 35.0% |
| GAACTTGCGAGTATATGTTA+CGG | + | chr2_2:53232565-53232584 | None:intergenic | 35.0% | |
| ! | TATTTTGTCCGTGTTTTGTG+TGG | - | chr2_2:53232646-53232665 | Msa0257430:intron | 35.0% |
| ! | TGAACGGAAGGAGAATATTT+TGG | - | chr2_2:53233034-53233053 | Msa0257430:intron | 35.0% |
| !! | CACTTGCTTTGAAGTCTAAA+AGG | + | chr2_2:53233166-53233185 | None:intergenic | 35.0% |
| ! | CTTTTAGACTTCAAAGCAAG+TGG | - | chr2_2:53233164-53233183 | Msa0257430:intron | 35.0% |
| AGTCAGCATTCCAGATTTAT+CGG | - | chr2_2:53233545-53233564 | Msa0257430:intron | 35.0% | |
| GATTTCCTTACCGATAAATC+TGG | + | chr2_2:53233558-53233577 | None:intergenic | 35.0% | |
| CTGCATAAAGTAAGTACTTC+AGG | + | chr2_2:53233617-53233636 | None:intergenic | 35.0% | |
| GAAACTGGTGATATAGTTCT+AGG | + | chr2_2:53233650-53233669 | None:intergenic | 35.0% | |
| ATTACCAATAACATAAGCGC+AGG | - | chr2_2:53233787-53233806 | Msa0257430:intron | 35.0% | |
| ACTGGGATGTATCCTAAAAA+TGG | - | chr2_2:53233882-53233901 | Msa0257430:CDS | 35.0% | |
| CTGGGATGTATCCTAAAAAT+GGG | - | chr2_2:53233883-53233902 | Msa0257430:CDS | 35.0% | |
| TGGGATGTATCCTAAAAATG+GGG | - | chr2_2:53233884-53233903 | Msa0257430:CDS | 35.0% | |
| !! | TTCTTGAAGTCCCCATTTTT+AGG | + | chr2_2:53233897-53233916 | None:intergenic | 35.0% |
| ! | AACTCGAGTTCTTTTTCTAG+AGG | - | chr2_2:53233920-53233939 | Msa0257430:CDS | 35.0% |
| TTGATGGGACTTAAGTACTA+TGG | - | chr2_2:53233989-53234008 | Msa0257430:CDS | 35.0% | |
| TGATGGGACTTAAGTACTAT+GGG | - | chr2_2:53233990-53234009 | Msa0257430:CDS | 35.0% | |
| AATCTCATACTACTCGATGT+AGG | + | chr2_2:53234026-53234045 | None:intergenic | 35.0% | |
| TAGAAGCTAGATATCGAAAG+GGG | + | chr2_2:53234080-53234099 | None:intergenic | 35.0% | |
| CTTAGAAGCTAGATATCGAA+AGG | + | chr2_2:53234082-53234101 | None:intergenic | 35.0% | |
| ! | ACACTCTTTGATGCTTTGTT+CGG | + | chr2_2:53234148-53234167 | None:intergenic | 35.0% |
| ! | TGATAGGGACTTGGATATTT+TGG | - | chr2_2:53234202-53234221 | Msa0257430:intron | 35.0% |
| ! | GATAGGGACTTGGATATTTT+GGG | - | chr2_2:53234203-53234222 | Msa0257430:intron | 35.0% |
| ! | ATAGGGACTTGGATATTTTG+GGG | - | chr2_2:53234204-53234223 | Msa0257430:intron | 35.0% |
| ! | TGTTTGGTGGAAAGTTTAAG+TGG | - | chr2_2:53234257-53234276 | Msa0257430:intron | 35.0% |
| !! | TTTTAAGGGACAGTTTCCTA+AGG | - | chr2_2:53234307-53234326 | Msa0257430:intron | 35.0% |
| TTTAAGGGACAGTTTCCTAA+GGG | - | chr2_2:53234308-53234327 | Msa0257430:intron | 35.0% | |
| AAAGAACTGCGTCTATCAAA+AGG | + | chr2_2:53234355-53234374 | None:intergenic | 35.0% | |
| TAAGAAACCTAGAGCAGAAT+TGG | - | chr2_2:53234420-53234439 | Msa0257430:intron | 35.0% | |
| CATAGTTCCATGTGAACATT+TGG | - | chr2_2:53234584-53234603 | Msa0257430:CDS | 35.0% | |
| GCCACAATCAAATTTGTCAA+AGG | - | chr2_2:53234606-53234625 | Msa0257430:CDS | 35.0% | |
| ! | TGTATTGTTGGTGTTCTTGA+AGG | - | chr2_2:53234717-53234736 | Msa0257430:CDS | 35.0% |
| ! | GGGAGGCATAAATAAATTCA+AGG | - | chr2_2:53234744-53234763 | Msa0257430:CDS | 35.0% |
| ! | ACAGTGACTTTGTTATGGAA+GGG | + | chr2_2:53235112-53235131 | None:intergenic | 35.0% |
| ! | AACAGTGACTTTGTTATGGA+AGG | + | chr2_2:53235113-53235132 | None:intergenic | 35.0% |
| ACAGAACAGTGACTTTGTTA+TGG | + | chr2_2:53235117-53235136 | None:intergenic | 35.0% | |
| ATCTGAATGCTATGCATCAT+AGG | - | chr2_2:53235161-53235180 | Msa0257430:intron | 35.0% | |
| ! | TGATTTGTGTAAGCTTCTCA+AGG | - | chr2_2:53235413-53235432 | Msa0257430:intron | 35.0% |
| TTCAATGTTGACAAGAAGCA+TGG | - | chr2_2:53235527-53235546 | Msa0257430:intron | 35.0% | |
| GACATACTTCCAATTGATGT+AGG | + | chr2_2:53235566-53235585 | None:intergenic | 35.0% | |
| ATTCCAAAAGTTAGCTCAAG+AGG | + | chr2_2:53235618-53235637 | None:intergenic | 35.0% | |
| AAAACTACAGAATTTGGGAG+CGG | + | chr2_2:53235651-53235670 | None:intergenic | 35.0% | |
| TGATACAGTGTTGTCAATTG+TGG | + | chr2_2:53235886-53235905 | None:intergenic | 35.0% | |
| ACAAGTCAACTTGTATGCTA+TGG | + | chr2_2:53235948-53235967 | None:intergenic | 35.0% | |
| AAGAGTCAGAAACCAATCAT+CGG | - | chr2_2:53236017-53236036 | Msa0257430:intron | 35.0% | |
| TTATCATTGGCATTTGCAGA+AGG | + | chr2_2:53236127-53236146 | None:intergenic | 35.0% | |
| AATGAGGCTCCTTAATAAGA+GGG | - | chr2_2:53236161-53236180 | Msa0257430:intron | 35.0% | |
| ACTTTGCTACTACCAACAAT+AGG | - | chr2_2:53236205-53236224 | Msa0257430:CDS | 35.0% | |
| CTGAATCAGAGTTTCGATGA+AGG | + | chr2_2:53230849-53230868 | None:intergenic | 40.0% | |
| CTTCATCGAAACTCTGATTC+AGG | - | chr2_2:53230847-53230866 | Msa0257430:three_prime_UTR | 40.0% | |
| TGCAGATGAATTGTCTGAAG+CGG | - | chr2_2:53231065-53231084 | Msa0257430:intron | 40.0% | |
| !! | TGTAGCAGTGTCACTTCTAA+TGG | - | chr2_2:53231220-53231239 | Msa0257430:intron | 40.0% |
| AGAAAAGTAACCACGTGTGT+CGG | + | chr2_2:53231344-53231363 | None:intergenic | 40.0% | |
| TACTAGTGTCAGTGTTGTGT+CGG | - | chr2_2:53231372-53231391 | Msa0257430:intron | 40.0% | |
| TCATAGGAGGTGAAAAAAGG+GGG | + | chr2_2:53231455-53231474 | None:intergenic | 40.0% | |
| TTAGCGTCATGTTAGTGGTT+AGG | - | chr2_2:53231548-53231567 | Msa0257430:intron | 40.0% | |
| TAGCGTCATGTTAGTGGTTA+GGG | - | chr2_2:53231549-53231568 | Msa0257430:intron | 40.0% | |
| CCAATGTTGTCAATAGATCG+CGG | + | chr2_2:53231767-53231786 | None:intergenic | 40.0% | |
| TGCAAAGATACTAGGAACTG+AGG | - | chr2_2:53232042-53232061 | Msa0257430:intron | 40.0% | |
| CGTGAAAGGATACAATGCAT+TGG | - | chr2_2:53232105-53232124 | Msa0257430:intron | 40.0% | |
| TGCAATTGAAGAAATGGGGA+AGG | - | chr2_2:53232174-53232193 | Msa0257430:intron | 40.0% | |
| !!! | GACGACACTTTTGATTTACG+AGG | - | chr2_2:53232445-53232464 | Msa0257430:intron | 40.0% |
| !!! | GACACTTTTGATTTACGAGG+TGG | - | chr2_2:53232448-53232467 | Msa0257430:intron | 40.0% |
| CCAATTAGCCACACAAAACA+CGG | + | chr2_2:53232657-53232676 | None:intergenic | 40.0% | |
| !! | ACGGAAGGAGAATATTTTGG+AGG | - | chr2_2:53233037-53233056 | Msa0257430:intron | 40.0% |
| !! | GGAGAATATTTTGGAGGTGT+TGG | - | chr2_2:53233043-53233062 | Msa0257430:intron | 40.0% |
| !! | TTTGGAGGTGTTGGAAATCA+TGG | - | chr2_2:53233052-53233071 | Msa0257430:intron | 40.0% |
| !! | CTCTATAGCGAAGGTATTTC+AGG | - | chr2_2:53233100-53233119 | Msa0257430:intron | 40.0% |
| ! | TCTTGTTGTAACCTTCGGTT+TGG | - | chr2_2:53233207-53233226 | Msa0257430:intron | 40.0% |
| TATGATGGTATGGAGGGATT+AGG | - | chr2_2:53233415-53233434 | Msa0257430:intron | 40.0% | |
| GACTGTGTAACTAGCAATGA+AGG | + | chr2_2:53233529-53233548 | None:intergenic | 40.0% | |
| GCATTCCAGATTTATCGGTA+AGG | - | chr2_2:53233550-53233569 | Msa0257430:intron | 40.0% | |
| CAGAAACTATATCATGCACG+AGG | + | chr2_2:53233580-53233599 | None:intergenic | 40.0% | |
| TCAAATGATGACTACCCACA+TGG | + | chr2_2:53233973-53233992 | None:intergenic | 40.0% | |
| TGTGGGTAGTCATCATTTGA+TGG | - | chr2_2:53233973-53233992 | Msa0257430:CDS | 40.0% | |
| GTGGGTAGTCATCATTTGAT+GGG | - | chr2_2:53233974-53233993 | Msa0257430:CDS | 40.0% | |
| GATGGGACTTAAGTACTATG+GGG | - | chr2_2:53233991-53234010 | Msa0257430:CDS | 40.0% | |
| ATGGGACTTAAGTACTATGG+GGG | - | chr2_2:53233992-53234011 | Msa0257430:CDS | 40.0% | |
| ATACTACTCGATGTAGGACT+TGG | + | chr2_2:53234020-53234039 | None:intergenic | 40.0% | |
| ! | ATCTAGCTTCTAAGAGAGCT+TGG | - | chr2_2:53234088-53234107 | Msa0257430:intron | 40.0% |
| ! | TCTAGCTTCTAAGAGAGCTT+GGG | - | chr2_2:53234089-53234108 | Msa0257430:intron | 40.0% |
| ! | TTCTAAGAGAGCTTGGGAAA+GGG | - | chr2_2:53234095-53234114 | Msa0257430:intron | 40.0% |
| ! | ATGCTACTTGACATGAGACT+TGG | + | chr2_2:53234233-53234252 | None:intergenic | 40.0% |
| AGTCTCATGTCAAGTAGCAT+AGG | - | chr2_2:53234233-53234252 | Msa0257430:intron | 40.0% | |
| GTCAAGTAGCATAGGATGTT+TGG | - | chr2_2:53234241-53234260 | Msa0257430:intron | 40.0% | |
| AAGTAGCATAGGATGTTTGG+TGG | - | chr2_2:53234244-53234263 | Msa0257430:intron | 40.0% | |
| TTAAAAGCTAGCTATCGAGG+GGG | + | chr2_2:53234293-53234312 | None:intergenic | 40.0% | |
| CTTAAAAGCTAGCTATCGAG+GGG | + | chr2_2:53234294-53234313 | None:intergenic | 40.0% | |
| CCTTAAAAGCTAGCTATCGA+GGG | + | chr2_2:53234295-53234314 | None:intergenic | 40.0% | |
| !!! | CCTCGATAGCTAGCTTTTAA+GGG | - | chr2_2:53234293-53234312 | Msa0257430:intron | 40.0% |
| TGATAAGTATCCAAGCCCTT+AGG | + | chr2_2:53234326-53234345 | None:intergenic | 40.0% | |
| ATTGTGGCCAAATGTTCACA+TGG | + | chr2_2:53234594-53234613 | None:intergenic | 40.0% | |
| ! | TTGGTGTTCTTGAAGGTTGA+GGG | - | chr2_2:53234724-53234743 | Msa0257430:CDS | 40.0% |
| TTCTCATATGACGAGGAAGA+AGG | + | chr2_2:53234796-53234815 | None:intergenic | 40.0% | |
| AATGAGCTTCTCATATGACG+AGG | + | chr2_2:53234803-53234822 | None:intergenic | 40.0% | |
| !! | ACAAGGTTCTGGAAGTAACT+TGG | + | chr2_2:53234879-53234898 | None:intergenic | 40.0% |
| TGTTATGGAAGGGTTCTTTG+AGG | + | chr2_2:53235102-53235121 | None:intergenic | 40.0% | |
| CAATTGATCGAACTCTCCAT+CGG | + | chr2_2:53235199-53235218 | None:intergenic | 40.0% | |
| ! | TCAATTGCTTCTGCTACTTG+AGG | - | chr2_2:53235212-53235231 | Msa0257430:intron | 40.0% |
| ! | TCACCTCTTGAGCTAACTTT+TGG | - | chr2_2:53235612-53235631 | Msa0257430:intron | 40.0% |
| AAACTACAGAATTTGGGAGC+GGG | + | chr2_2:53235650-53235669 | None:intergenic | 40.0% | |
| AAGCTGCTGTGTGAAAACAT+TGG | + | chr2_2:53235719-53235738 | None:intergenic | 40.0% | |
| ! | CACTAAAGCACTACTATAGC+TGG | + | chr2_2:53235821-53235840 | None:intergenic | 40.0% |
| CTATAGTAGTGCTTTAGTGC+TGG | - | chr2_2:53235822-53235841 | Msa0257430:intron | 40.0% | |
| GTGTTGTCAATTGTGGAATG+CGG | + | chr2_2:53235879-53235898 | None:intergenic | 40.0% | |
| ! | TGAAGGATAAGCTTGGTCTT+TGG | - | chr2_2:53236068-53236087 | Msa0257430:intron | 40.0% |
| GAATGAGGCTCCTTAATAAG+AGG | - | chr2_2:53236160-53236179 | Msa0257430:intron | 40.0% | |
| ATGAGGCTCCTTAATAAGAG+GGG | - | chr2_2:53236162-53236181 | Msa0257430:intron | 40.0% | |
| ! | GTGCTGGTGTACATACAAAT+TGG | - | chr2_2:53236227-53236246 | Msa0257430:CDS | 40.0% |
| CTTTCTTTCAAGAGGGTGAA+GGG | + | chr2_2:53236297-53236316 | None:intergenic | 40.0% | |
| TCTTTCTTTCAAGAGGGTGA+AGG | + | chr2_2:53236298-53236317 | None:intergenic | 40.0% | |
| TGGGTGAATGTGTACGAAAG+GGG | + | chr2_2:53230736-53230755 | None:intergenic | 45.0% | |
| GTGGGTGAATGTGTACGAAA+GGG | + | chr2_2:53230737-53230756 | None:intergenic | 45.0% | |
| CAGAGTTTCGATGAAGGTTG+AGG | + | chr2_2:53230843-53230862 | None:intergenic | 45.0% | |
| TAGAAGTGACACTGCTACAG+AGG | + | chr2_2:53231219-53231238 | None:intergenic | 45.0% | |
| AGTGGTTAGGGTTTGAACCT+TGG | - | chr2_2:53231561-53231580 | Msa0257430:intron | 45.0% | |
| ! | TGCTGAGTTACTCTAAGGGT+TGG | + | chr2_2:53231597-53231616 | None:intergenic | 45.0% |
| CCGCGATCTATTGACAACAT+TGG | - | chr2_2:53231764-53231783 | Msa0257430:intron | 45.0% | |
| GCATCAACTTTCTCGGTATC+AGG | + | chr2_2:53231863-53231882 | None:intergenic | 45.0% | |
| GATAAAGTGGGACGAAAACC+AGG | - | chr2_2:53232082-53232101 | Msa0257430:intron | 45.0% | |
| TCCCAATTCAACTGCAAGAC+TGG | - | chr2_2:53232336-53232355 | Msa0257430:intron | 45.0% | |
| CCCAGTCTTGCAGTTGAATT+GGG | + | chr2_2:53232340-53232359 | None:intergenic | 45.0% | |
| CCCAATTCAACTGCAAGACT+GGG | - | chr2_2:53232337-53232356 | Msa0257430:intron | 45.0% | |
| ACCCAGTCTTGCAGTTGAAT+TGG | + | chr2_2:53232341-53232360 | None:intergenic | 45.0% | |
| ! | CCGTGTTTTGTGTGGCTAAT+TGG | - | chr2_2:53232654-53232673 | Msa0257430:intron | 45.0% |
| AAATTGGTGCATCCACTGTC+TGG | - | chr2_2:53232866-53232885 | Msa0257430:intron | 45.0% | |
| TATGTCTCCAAACCAGACAG+TGG | + | chr2_2:53232881-53232900 | None:intergenic | 45.0% | |
| TGGCTCTTTGTGAGAGTGAA+CGG | - | chr2_2:53233018-53233037 | Msa0257430:intron | 45.0% | |
| TCTTTGTGAGAGTGAACGGA+AGG | - | chr2_2:53233022-53233041 | Msa0257430:intron | 45.0% | |
| !! | ATCTGTTGGCTCTATAGCGA+AGG | - | chr2_2:53233091-53233110 | Msa0257430:intron | 45.0% |
| !! | AGCGAAGGTATTTCAGGCAT+TGG | - | chr2_2:53233106-53233125 | Msa0257430:intron | 45.0% |
| !! | GCGAAGGTATTTCAGGCATT+GGG | - | chr2_2:53233107-53233126 | Msa0257430:intron | 45.0% |
| ! | GGCATTGGGAAGACTACTAT+TGG | - | chr2_2:53233121-53233140 | Msa0257430:intron | 45.0% |
| ACTATTGGAACCTGTTGCAG+AGG | - | chr2_2:53233136-53233155 | Msa0257430:intron | 45.0% | |
| AGGACCTGCGCTTATGTTAT+TGG | + | chr2_2:53233794-53233813 | None:intergenic | 45.0% | |
| !! | AGCGCAGGTCCTTTAAAGTT+TGG | - | chr2_2:53233802-53233821 | Msa0257430:intron | 45.0% |
| TTAAACCCTGAGTCTGCAGT+AGG | - | chr2_2:53233838-53233857 | Msa0257430:intron | 45.0% | |
| AATGTCCTACTGCAGACTCA+GGG | + | chr2_2:53233846-53233865 | None:intergenic | 45.0% | |
| ATGACTACCCACATGGTGTT+GGG | + | chr2_2:53233966-53233985 | None:intergenic | 45.0% | |
| ! | CTTCTAAGAGAGCTTGGGAA+AGG | - | chr2_2:53234094-53234113 | Msa0257430:intron | 45.0% |
| ! | GCATCAAAGAGTGTAGCTTC+CGG | - | chr2_2:53234154-53234173 | Msa0257430:intron | 45.0% |
| ! | CATCAAAGAGTGTAGCTTCC+GGG | - | chr2_2:53234155-53234174 | Msa0257430:intron | 45.0% |
| ! | ATCAAAGAGTGTAGCTTCCG+GGG | - | chr2_2:53234156-53234175 | Msa0257430:intron | 45.0% |
| GGTGGAAAGTTTAAGTGGCT+TGG | - | chr2_2:53234262-53234281 | Msa0257430:intron | 45.0% | |
| !!! | CCCTCGATAGCTAGCTTTTA+AGG | - | chr2_2:53234292-53234311 | Msa0257430:intron | 45.0% |
| CCCTTAAAAGCTAGCTATCG+AGG | + | chr2_2:53234296-53234315 | None:intergenic | 45.0% | |
| GAAACCTAGAGCAGAATTGG+TGG | - | chr2_2:53234423-53234442 | Msa0257430:intron | 45.0% | |
| CTATCCACCAATTCTGCTCT+AGG | + | chr2_2:53234430-53234449 | None:intergenic | 45.0% | |
| CCAAACACACGATTAGTGAC+AGG | + | chr2_2:53234665-53234684 | None:intergenic | 45.0% | |
| CCTGTCACTAATCGTGTGTT+TGG | - | chr2_2:53234662-53234681 | Msa0257430:CDS | 45.0% | |
| ! | GTTGGTGTTCTTGAAGGTTG+AGG | - | chr2_2:53234723-53234742 | Msa0257430:CDS | 45.0% |
| ACGTAACTGTGCATTGCTCA+AGG | - | chr2_2:53234825-53234844 | Msa0257430:CDS | 45.0% | |
| GCAGCAAGCATCATTCCAAT+AGG | + | chr2_2:53235253-53235272 | None:intergenic | 45.0% | |
| CATGCAAGTTTGCCGATGAT+TGG | + | chr2_2:53236032-53236051 | None:intergenic | 45.0% | |
| CAATCATCGGCAAACTTGCA+TGG | - | chr2_2:53236030-53236049 | Msa0257430:intron | 45.0% | |
| CTACTACCAACAATAGGTGC+TGG | - | chr2_2:53236211-53236230 | Msa0257430:CDS | 45.0% | |
| TGTACACCAGCACCTATTGT+TGG | + | chr2_2:53236220-53236239 | None:intergenic | 45.0% | |
| GGGTGAATGTGTACGAAAGG+GGG | + | chr2_2:53230735-53230754 | None:intergenic | 50.0% | |
| GGTGGGTGAATGTGTACGAA+AGG | + | chr2_2:53230738-53230757 | None:intergenic | 50.0% | |
| ! | GTCTGTGTCACTGTCTTGTC+CGG | - | chr2_2:53231316-53231335 | Msa0257430:intron | 50.0% |
| TGACAACATTGGACCTCGCT+TGG | - | chr2_2:53231775-53231794 | Msa0257430:intron | 50.0% | |
| GCATTGTATCCTTTCACGCC+TGG | + | chr2_2:53232103-53232122 | None:intergenic | 50.0% | |
| GGGCGATATGTTTGCTCTTC+TGG | + | chr2_2:53232241-53232260 | None:intergenic | 50.0% | |
| AAAAGGAGCTCCTCTGCAAC+AGG | + | chr2_2:53233149-53233168 | None:intergenic | 50.0% | |
| GAATGTCCTACTGCAGACTC+AGG | + | chr2_2:53233847-53233866 | None:intergenic | 50.0% | |
| CAACTCTCCCAACACCATGT+GGG | - | chr2_2:53233956-53233975 | Msa0257430:CDS | 50.0% | |
| GATGACTACCCACATGGTGT+TGG | + | chr2_2:53233967-53233986 | None:intergenic | 50.0% | |
| !! | AGCTTGGGAAAGGGTACCTA+TGG | - | chr2_2:53234104-53234123 | Msa0257430:intron | 50.0% |
| !! | TTGGGAAAGGGTACCTATGG+AGG | - | chr2_2:53234107-53234126 | Msa0257430:intron | 50.0% |
| !! | TGGGAAAGGGTACCTATGGA+GGG | - | chr2_2:53234108-53234127 | Msa0257430:intron | 50.0% |
| ! | GATGCTTTGTTCGGCCATTG+CGG | + | chr2_2:53234139-53234158 | None:intergenic | 50.0% |
| TCTCGGGCAGAGCTATGATA+GGG | - | chr2_2:53234187-53234206 | Msa0257430:intron | 50.0% | |
| GCAGAGCTATGATAGGGACT+TGG | - | chr2_2:53234193-53234212 | Msa0257430:intron | 50.0% | |
| GTGTTCTTGAAGGTTGAGGG+AGG | - | chr2_2:53234727-53234746 | Msa0257430:CDS | 50.0% | |
| ! | TAGGAGCACACTTGTTCCGA+TGG | - | chr2_2:53235180-53235199 | Msa0257430:intron | 50.0% |
| !! | GTGCTTTAGTGCTGGCGTAA+TGG | - | chr2_2:53235830-53235849 | Msa0257430:intron | 50.0% |
| GATGAAGGTTGAGGCTTGCG+AGG | + | chr2_2:53230834-53230853 | None:intergenic | 55.0% | |
| GGGTTGGAGAATCAGCTCCA+AGG | + | chr2_2:53231581-53231600 | None:intergenic | 55.0% | |
| GTAGTTCAAGTGGCCAAGCG+AGG | + | chr2_2:53231791-53231810 | None:intergenic | 55.0% | |
| GGACGAAAACCAGGCGTGAA+AGG | - | chr2_2:53232091-53232110 | Msa0257430:intron | 55.0% | |
| GGTGCATCCACTGTCTGGTT+TGG | - | chr2_2:53232871-53232890 | Msa0257430:intron | 55.0% | |
| ! | CCACATGGTGTTGGGAGAGT+TGG | + | chr2_2:53233958-53233977 | None:intergenic | 55.0% |
| CCAACTCTCCCAACACCATG+TGG | - | chr2_2:53233955-53233974 | Msa0257430:CDS | 55.0% | |
| !! | GGGAAAGGGTACCTATGGAG+GGG | - | chr2_2:53234109-53234128 | Msa0257430:intron | 55.0% |
| ATTGCGGTCAACCCCTCCAT+AGG | + | chr2_2:53234123-53234142 | None:intergenic | 55.0% | |
| TATGGAGGGGTTGACCGCAA+TGG | - | chr2_2:53234122-53234141 | Msa0257430:intron | 55.0% | |
| AGTGTAGCTTCCGGGGACAT+CGG | - | chr2_2:53234163-53234182 | Msa0257430:intron | 55.0% | |
| CTCTCGGGCAGAGCTATGAT+AGG | - | chr2_2:53234186-53234205 | Msa0257430:intron | 55.0% | |
| GGGACAGTTTCCTAAGGGCT+TGG | - | chr2_2:53234313-53234332 | Msa0257430:intron | 55.0% | |
| ! | GTAACCACGTGTGTCGGCGC+CGG | + | chr2_2:53231338-53231357 | None:intergenic | 65.0% |
| !! | CTTCCGGGGACATCGGCTCT+CGG | - | chr2_2:53234170-53234189 | Msa0257430:intron | 65.0% |
| !! | TTCCGGGGACATCGGCTCTC+GGG | - | chr2_2:53234171-53234190 | Msa0257430:intron | 65.0% |
| !! | TTGTCCGGCGCCGACACACG+TGG | - | chr2_2:53231331-53231350 | Msa0257430:intron | 70.0% |
| TGCCCGAGAGCCGATGTCCC+CGG | + | chr2_2:53234176-53234195 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 53230594 | 53236447 | 53230594 | ID=Msa0257430;Name=Msa0257430 |
| chr2_2 | mRNA | 53230594 | 53236447 | 53230594 | ID=Msa0257430-mRNA-1;Parent=Msa0257430;Name=Msa0257430-mRNA-1;_AED=0.14;_eAED=0.14;_QI=104|0.6|0.83|1|1|1|6|282|391 |
| chr2_2 | exon | 53230594 | 53231040 | 53230594 | ID=Msa0257430-mRNA-1:exon:16001;Parent=Msa0257430-mRNA-1 |
| chr2_2 | exon | 53233475 | 53233539 | 53233475 | ID=Msa0257430-mRNA-1:exon:16000;Parent=Msa0257430-mRNA-1 |
| chr2_2 | exon | 53233856 | 53234035 | 53233856 | ID=Msa0257430-mRNA-1:exon:15999;Parent=Msa0257430-mRNA-1 |
| chr2_2 | exon | 53234575 | 53235121 | 53234575 | ID=Msa0257430-mRNA-1:exon:15998;Parent=Msa0257430-mRNA-1 |
| chr2_2 | exon | 53235924 | 53235971 | 53235924 | ID=Msa0257430-mRNA-1:exon:15997;Parent=Msa0257430-mRNA-1 |
| chr2_2 | exon | 53236173 | 53236447 | 53236173 | ID=Msa0257430-mRNA-1:exon:15996;Parent=Msa0257430-mRNA-1 |
| chr2_2 | five_prime_UTR | 53236344 | 53236447 | 53236344 | ID=Msa0257430-mRNA-1:five_prime_utr;Parent=Msa0257430-mRNA-1 |
| chr2_2 | CDS | 53236173 | 53236343 | 53236173 | ID=Msa0257430-mRNA-1:cds;Parent=Msa0257430-mRNA-1 |
| chr2_2 | CDS | 53235924 | 53235971 | 53235924 | ID=Msa0257430-mRNA-1:cds;Parent=Msa0257430-mRNA-1 |
| chr2_2 | CDS | 53234575 | 53235121 | 53234575 | ID=Msa0257430-mRNA-1:cds;Parent=Msa0257430-mRNA-1 |
| chr2_2 | CDS | 53233856 | 53234035 | 53233856 | ID=Msa0257430-mRNA-1:cds;Parent=Msa0257430-mRNA-1 |
| chr2_2 | CDS | 53233475 | 53233539 | 53233475 | ID=Msa0257430-mRNA-1:cds;Parent=Msa0257430-mRNA-1 |
| chr2_2 | CDS | 53230876 | 53231040 | 53230876 | ID=Msa0257430-mRNA-1:cds;Parent=Msa0257430-mRNA-1 |
| chr2_2 | three_prime_UTR | 53230594 | 53230875 | 53230594 | ID=Msa0257430-mRNA-1:three_prime_utr;Parent=Msa0257430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
