AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0432770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432770 MtrunA17_Chr3g0138361 85.385 260 30 2 1 256 1 256 3.57e-153 427
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432770 AT4G32560.4 46.667 240 126 1 15 252 22 261 3.28e-62 197
Msa0432770 AT4G32560.3 46.667 240 126 1 15 252 45 284 6.27e-62 197
Msa0432770 AT4G32560.1 46.667 240 126 1 15 252 47 286 6.86e-62 197
Msa0432770 AT4G32560.2 46.667 240 126 1 15 252 47 286 6.86e-62 197

Find 62 sgRNAs with CRISPR-Local

Find 461 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTACCTACAATGCTCTTT+TGG 0.238498 3_2:+84999221 Msa0432770:CDS
AAGAGTTGATTTGATGAAAA+AGG 0.251538 3_2:+84998188 Msa0432770:CDS
AACTTCGATGAGTGGCAATT+TGG 0.253638 3_2:+84997799 Msa0432770:exon
TTGGAATAATCTCCATTTAC+AGG 0.293628 3_2:-85004267 None:intergenic
TTCCAATCGGCCAAAGGATT+GGG 0.306996 3_2:+85004284 Msa0432770:three_prime_UTR
AATAAAAGAATTGATGTTAA+AGG 0.310913 3_2:+84999245 Msa0432770:CDS
AGTATGAATTTATAATAATA+AGG 0.333722 3_2:-85004355 None:intergenic
TATTTCCAAAAGAGCATTGT+AGG 0.361022 3_2:-84999226 None:intergenic
AGCTCACAATACCATGGTTA+TGG 0.369500 3_2:+85004097 Msa0432770:three_prime_UTR
GACAAATCTTAATGATCTTA+AGG 0.372253 3_2:+85002909 Msa0432770:CDS
ATTAAGAGAGAGAATCAATA+AGG 0.380556 3_2:+84997880 Msa0432770:CDS
CTTACTGGACGATTTCTGAT+TGG 0.404896 3_2:-84998378 None:intergenic
ATTGGAGTGCCCCAATCCTT+TGG 0.408856 3_2:-85004294 None:intergenic
ATTCCAATCGGCCAAAGGAT+TGG 0.422827 3_2:+85004283 Msa0432770:three_prime_UTR
GCTCCACAACATTCATCTTC+CGG 0.435244 3_2:-84997847 None:intergenic
AATTTATAATAATAAGGATA+AGG 0.437533 3_2:-85004349 None:intergenic
GCCCCAATCCTTTGGCCGAT+TGG 0.442457 3_2:-85004286 None:intergenic
TCCCTTGACAATTCCTTCCA+TGG 0.449854 3_2:-85000845 None:intergenic
GCTCACAATACCATGGTTAT+GGG 0.451293 3_2:+85004098 Msa0432770:three_prime_UTR
AATTGTCAAGGGAAGTGAAC+AGG 0.458713 3_2:+85000855 Msa0432770:CDS
AGGAACTTGCTGCTAGACTA+AGG 0.460208 3_2:+84998314 Msa0432770:intron
TATAAAGCTTGTTCATTCCA+TGG 0.467664 3_2:+85000828 Msa0432770:CDS
GAGTGGCAATTTGGATGAAC+TGG 0.470793 3_2:+84997808 Msa0432770:CDS
TTGACACCGTAACTTCTCCT+TGG 0.470807 3_2:-85003989 None:intergenic
CAATTCAATCAAGTCTTTGA+AGG 0.479320 3_2:+84997934 Msa0432770:CDS
ATTGAATTCGATCATTTCAC+AGG 0.492974 3_2:+84999278 Msa0432770:CDS
TGGTTTGTGAGATTGATTGC+CGG 0.503885 3_2:+84997828 Msa0432770:CDS
AGAGAGAGAATCAATAAGGA+AGG 0.516554 3_2:+84997884 Msa0432770:CDS
CAGTCAAAGCGGATCGATGA+TGG 0.517423 3_2:+85004069 Msa0432770:CDS
TACCTTATTGCAGTTTCAAG+AGG 0.525372 3_2:+85000783 Msa0432770:intron
AGTTCAGGATCTTGAAAGGA+AGG 0.526031 3_2:+84998029 Msa0432770:intron
CATTCTCTTAGCGAATCACT+TGG 0.532694 3_2:+84998165 Msa0432770:CDS
AAGCTTGTTCATTCCATGGA+AGG 0.540003 3_2:+85000832 Msa0432770:CDS
AAACTACGAAAGGTTCAACT+AGG 0.544419 3_2:+85002871 Msa0432770:CDS
CGATTTCTGATTGGCACGGT+AGG 0.549963 3_2:-84998369 None:intergenic
TAAATGGAGATTATTCCAAT+CGG 0.553466 3_2:+85004271 Msa0432770:three_prime_UTR
TTCCATGGAAGGAATTGTCA+AGG 0.564214 3_2:+85000843 Msa0432770:CDS
TCCAATCGGCCAAAGGATTG+GGG 0.567106 3_2:+85004285 Msa0432770:three_prime_UTR
TCTTAGTTCAGGATCTTGAA+AGG 0.575221 3_2:+84998025 Msa0432770:intron
AGAACTGTATGCTCAAATCC+AGG 0.575284 3_2:+84999014 Msa0432770:CDS
ACGACCATCAGTGCTACTAA+AGG 0.575612 3_2:-85000806 None:intergenic
GAGCATACAGTTCTGAGAGC+CGG 0.578341 3_2:-84999005 None:intergenic
AATGCTCCAAGGAGAAGTTA+CGG 0.584884 3_2:+85003983 Msa0432770:CDS
GAGGCCTTTAGTAGCACTGA+TGG 0.586647 3_2:+85000802 Msa0432770:CDS
GATAGATATGCCGCAGCAGT+CGG 0.593565 3_2:+85002931 Msa0432770:CDS
AGATTATTCCAATCGGCCAA+AGG 0.597029 3_2:+85004278 Msa0432770:three_prime_UTR
CTTAACACAACTTCGATGAG+TGG 0.606083 3_2:+84997791 Msa0432770:exon
CTGAGATTAATGAATTAGAG+AGG 0.628262 3_2:+84998100 Msa0432770:CDS
AACTACGAAAGGTTCAACTA+GGG 0.640484 3_2:+85002872 Msa0432770:CDS
TCCATGGAAGGAATTGTCAA+GGG 0.644066 3_2:+85000844 Msa0432770:CDS
TTGCCGGAAGATGAATGTTG+TGG 0.644134 3_2:+84997844 Msa0432770:CDS
GGAACTTGCTGCTAGACTAA+GGG 0.645439 3_2:+84998315 Msa0432770:intron
TTATAAACTGATGCGAGCTG+CGG 0.645761 3_2:+85004141 Msa0432770:three_prime_UTR
CTTATGCTCACCGACTGCTG+CGG 0.652781 3_2:-85002941 None:intergenic
GAAAATTGCTGACGTCTCTG+AGG 0.657782 3_2:+85004022 Msa0432770:CDS
TGGACGATTTCTGATTGGCA+CGG 0.669366 3_2:-84998373 None:intergenic
GCTTGTGCAGGTATGAACAC+CGG 0.672424 3_2:+84998986 Msa0432770:intron
AATATTTGCATCAGTCAAAG+CGG 0.676651 3_2:+85004058 Msa0432770:CDS
ATCTTGTTAACCCATAACCA+TGG 0.686727 3_2:-85004108 None:intergenic
ATATGTACAGAAACTACGAA+AGG 0.693870 3_2:+85002861 Msa0432770:intron
GTCACAAGCTCACAATACCA+TGG 0.697448 3_2:+85004091 Msa0432770:three_prime_UTR
AGGAAAATAGCAAATGACTG+TGG 0.704917 3_2:+84998120 Msa0432770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATAACTATTTATGTT+GGG - chr3_2:85003710-85003729 None:intergenic 10.0%
!! TATTATATAACTATTTATGT+TGG - chr3_2:85003711-85003730 None:intergenic 10.0%
!! AACATAAATAGTTATATAAT+AGG + chr3_2:85003710-85003729 Msa0432770:intron 10.0%
!!! AATTAAATAAAAGTTTTGTA+TGG + chr3_2:85004219-85004238 Msa0432770:three_prime_UTR 10.0%
!! GAAAATAGTAAAAAATAAAT+TGG - chr3_2:85004315-85004334 None:intergenic 10.0%
!!! TATTTTTTACTATTTTCAAA+TGG + chr3_2:85004318-85004337 Msa0432770:three_prime_UTR 10.0%
!! AATTTATAATAATAAGGATA+AGG - chr3_2:85004352-85004371 None:intergenic 10.0%
!! AGTATGAATTTATAATAATA+AGG - chr3_2:85004358-85004377 None:intergenic 10.0%
!!! ACTTAATTTTCATTTTTCAA+TGG + chr3_2:84997764-84997783 Msa0432770:five_prime_UTR 15.0%
!!! ATAAAAGTAATTGATAATAC+GGG - chr3_2:84998471-84998490 None:intergenic 15.0%
!!! GATAAAAGTAATTGATAATA+CGG - chr3_2:84998472-84998491 None:intergenic 15.0%
!!! TGGAATATATTGTTATTTAT+TGG + chr3_2:84998948-84998967 Msa0432770:intron 15.0%
!! AATAAAAGAATTGATGTTAA+AGG + chr3_2:84999245-84999264 Msa0432770:CDS 15.0%
!!! AAAGATTGCATTTTTTAAAA+GGG - chr3_2:84999551-84999570 None:intergenic 15.0%
!!! GAAGATTTTTTTTTTTTTTG+TGG - chr3_2:84999999-85000018 None:intergenic 15.0%
!!! TTTTATTGCATCTTTTAATT+TGG + chr3_2:85000593-85000612 Msa0432770:intron 15.0%
!! TACATAATTTATAGATATCA+AGG - chr3_2:85001515-85001534 None:intergenic 15.0%
!! ATTATAAGATTAAAGCTAAA+TGG + chr3_2:85001858-85001877 Msa0432770:intron 15.0%
!! TTATAAGATTAAAGCTAAAT+GGG + chr3_2:85001859-85001878 Msa0432770:intron 15.0%
!! AATGATCAATAAAATAAAAG+AGG - chr3_2:85002431-85002450 None:intergenic 15.0%
!! TATACAATTTATAGATATCA+AGG - chr3_2:85003421-85003440 None:intergenic 15.0%
!!! AATTTTTTAGTTAAATACTC+TGG + chr3_2:85003502-85003521 Msa0432770:intron 15.0%
!! AGTTAAATTAGAAAACTTAT+AGG - chr3_2:85003615-85003634 None:intergenic 15.0%
!!! TAATTATTTTAGAATGTCCT+TGG + chr3_2:84999152-84999171 Msa0432770:intron 20.0%
!! AAAATAAATAGAATGGCAAA+AGG - chr3_2:84999457-84999476 None:intergenic 20.0%
!!! CAAAGATTGCATTTTTTAAA+AGG - chr3_2:84999552-84999571 None:intergenic 20.0%
!!! GATTTTTTTTTTTTTTGTGG+TGG - chr3_2:84999996-85000015 None:intergenic 20.0%
!! TACACCTTAATCTATATTAA+TGG - chr3_2:85000383-85000402 None:intergenic 20.0%
!!! AAGAATTTGAGATCTAATAA+AGG + chr3_2:85000419-85000438 Msa0432770:intron 20.0%
!!! TTTAAGTTCAAGAAACATTA+TGG - chr3_2:85000645-85000664 None:intergenic 20.0%
!! AAATAAGATGATGAAATGTT+AGG - chr3_2:85000701-85000720 None:intergenic 20.0%
!! GTCAATATAATTAAATGCAA+GGG - chr3_2:85001172-85001191 None:intergenic 20.0%
!!! TTTTGCTTGAATCTTATAAT+TGG - chr3_2:85001243-85001262 None:intergenic 20.0%
!! ATTATAAGATTCAAGCAAAA+TGG + chr3_2:85001243-85001262 Msa0432770:intron 20.0%
!! TTATAAGATTCAAGCAAAAT+GGG + chr3_2:85001244-85001263 Msa0432770:intron 20.0%
!! ACAACTATTAATCATGAAAT+GGG - chr3_2:85001470-85001489 None:intergenic 20.0%
!! TCATTTAGAAAGATTTGATT+CGG + chr3_2:85001569-85001588 Msa0432770:intron 20.0%
!!! ATATTTTTACTGTACAATGT+TGG + chr3_2:85001940-85001959 Msa0432770:intron 20.0%
!!! TATTTTTACTGTACAATGTT+GGG + chr3_2:85001941-85001960 Msa0432770:intron 20.0%
!!! AAATATGTGAAAGGATTTTA+TGG + chr3_2:85002289-85002308 Msa0432770:intron 20.0%
!! TTATCCAAATAATAATCAGA+AGG - chr3_2:85002646-85002665 None:intergenic 20.0%
!! AAAACTCAAATGGTAATATA+AGG - chr3_2:85002761-85002780 None:intergenic 20.0%
!! GAAAAATAACAAAACTCAAA+TGG - chr3_2:85002771-85002790 None:intergenic 20.0%
!!! GTAGAATAGTTTTAGTTTTT+TGG + chr3_2:85003034-85003053 Msa0432770:intron 20.0%
!! GATTAAACCTAATGAAAATT+TGG - chr3_2:85003062-85003081 None:intergenic 20.0%
!! ACATTTATTAACCATGAAAT+GGG - chr3_2:85003112-85003131 None:intergenic 20.0%
!!! TACATATTTTGTAGATATCA+AGG - chr3_2:85003157-85003176 None:intergenic 20.0%
!! TAAACACTTATGAAACTATT+TGG + chr3_2:85003564-85003583 Msa0432770:intron 20.0%
!! AAACACTTATGAAACTATTT+GGG + chr3_2:85003565-85003584 Msa0432770:intron 20.0%
!! TAACTTATGAAAACAACTTA+TGG + chr3_2:85003630-85003649 Msa0432770:intron 20.0%
!! AGCTATTTGATAAGTAAAAA+CGG - chr3_2:85003944-85003963 None:intergenic 20.0%
!! TATCAAATAGCTTTCTTTAA+TGG + chr3_2:85003952-85003971 Msa0432770:intron 20.0%
! ATTAAGAGAGAGAATCAATA+AGG + chr3_2:84997880-84997899 Msa0432770:CDS 25.0%
!!! AAGAGTTGATTTGATGAAAA+AGG + chr3_2:84998188-84998207 Msa0432770:CDS 25.0%
! AAAAAGGTAACAATTAGCAT+TGG + chr3_2:84998204-84998223 Msa0432770:intron 25.0%
! AAAAGGTAACAATTAGCATT+GGG + chr3_2:84998205-84998224 Msa0432770:intron 25.0%
! GTTTGTAGTAATTGAAACAA+TGG - chr3_2:84998273-84998292 None:intergenic 25.0%
! GTATAAAGAAACAAACTTAC+TGG - chr3_2:84998396-84998415 None:intergenic 25.0%
! TCATTCAAGAAAGAGTTATA+CGG - chr3_2:84998420-84998439 None:intergenic 25.0%
! AAATATTCTAGACACTTGTA+GGG - chr3_2:84998498-84998517 None:intergenic 25.0%
! AGATCTAAAGATTAATGAGT+TGG + chr3_2:84998761-84998780 Msa0432770:intron 25.0%
! TGGTATATGATAGAACATTA+TGG + chr3_2:84998793-84998812 Msa0432770:intron 25.0%
! ATCAAAAGAATTTATGAACC+TGG - chr3_2:84999035-84999054 None:intergenic 25.0%
!! AAAAGTGAAAAAGTTTTGCT+AGG + chr3_2:84999077-84999096 Msa0432770:intron 25.0%
!! AAAGTGAAAAAGTTTTGCTA+GGG + chr3_2:84999078-84999097 Msa0432770:intron 25.0%
! TGTATCATAGCAAAATCATA+AGG - chr3_2:84999352-84999371 None:intergenic 25.0%
! CAGAAGGAAAATAAATAGAA+TGG - chr3_2:84999464-84999483 None:intergenic 25.0%
! AGTTTATGGTAAATGTAAGA+AGG - chr3_2:84999593-84999612 None:intergenic 25.0%
!! TTTCAGGATAGTTTAGTTTA+TGG - chr3_2:84999607-84999626 None:intergenic 25.0%
! ATCCTGAAAAATTGAACTAT+TGG + chr3_2:84999618-84999637 Msa0432770:intron 25.0%
!! ATCCAATAGTTCAATTTTTC+AGG - chr3_2:84999623-84999642 None:intergenic 25.0%
! AAAATTGAACTATTGGATGA+AGG + chr3_2:84999625-84999644 Msa0432770:intron 25.0%
! AATATAAAACCCTTCTCATT+TGG + chr3_2:84999799-84999818 Msa0432770:intron 25.0%
! ATATAAAACCCTTCTCATTT+GGG + chr3_2:84999800-84999819 Msa0432770:intron 25.0%
! GAACTAAAAAATTGTATTGG+AGG + chr3_2:84999824-84999843 Msa0432770:intron 25.0%
! TAAAAAATTGTATTGGAGGA+GGG + chr3_2:84999828-84999847 Msa0432770:intron 25.0%
!! TATTTTGCAGTAACTTAACA+TGG + chr3_2:85000227-85000246 Msa0432770:intron 25.0%
! AATAATTAAACTTCAGCACA+TGG - chr3_2:85000276-85000295 None:intergenic 25.0%
!! ATTATTTAGAACAATGACAG+TGG + chr3_2:85000290-85000309 Msa0432770:intron 25.0%
! AAGGCCATTAATATAGATTA+AGG + chr3_2:85000376-85000395 Msa0432770:intron 25.0%
!!! ATCTCAAAAATTTGAGTTGT+TGG + chr3_2:85000552-85000571 Msa0432770:intron 25.0%
!!! TCTCAAAAATTTGAGTTGTT+GGG + chr3_2:85000553-85000572 Msa0432770:intron 25.0%
!! TTGAACTTAAAAAAGCATAG+TGG + chr3_2:85000654-85000673 Msa0432770:intron 25.0%
!! AATGTTAGGTCAAACAATTT+TGG - chr3_2:85000687-85000706 None:intergenic 25.0%
!! TTTTTGCATGCGTAAATATT+TGG + chr3_2:85000886-85000905 Msa0432770:intron 25.0%
! ACTTTGGACTAAAATTTGAT+TGG + chr3_2:85000948-85000967 Msa0432770:intron 25.0%
! TGAAAAATCAAATGTGTGAA+TGG - chr3_2:85000990-85001009 None:intergenic 25.0%
! GGTCAATATAATTAAATGCA+AGG - chr3_2:85001173-85001192 None:intergenic 25.0%
! ATATATGTACAGAAACTAGA+AGG + chr3_2:85001364-85001383 Msa0432770:intron 25.0%
! GATTAAACCTATGAAAAAGT+TGG - chr3_2:85001428-85001447 None:intergenic 25.0%
! TTTCATAGGTTTAATCTTCA+TGG + chr3_2:85001432-85001451 Msa0432770:intron 25.0%
! TTCATAGGTTTAATCTTCAT+GGG + chr3_2:85001433-85001452 Msa0432770:intron 25.0%
! AACTATTAATCATGAAATGG+GGG - chr3_2:85001468-85001487 None:intergenic 25.0%
! CAACTATTAATCATGAAATG+GGG - chr3_2:85001469-85001488 None:intergenic 25.0%
! CACAACTATTAATCATGAAA+TGG - chr3_2:85001471-85001490 None:intergenic 25.0%
! CATTTAGAAAGATTTGATTC+GGG + chr3_2:85001570-85001589 Msa0432770:intron 25.0%
!! TAATGTCTTATTGTCAATAC+TGG - chr3_2:85001765-85001784 None:intergenic 25.0%
!!! AGTATTGACAATAAGACATT+AGG + chr3_2:85001764-85001783 Msa0432770:intron 25.0%
! TGTAAAAACATTAGTATGGA+TGG + chr3_2:85002168-85002187 Msa0432770:intron 25.0%
!!! GATTTGGATAAAGTCTTATT+TGG - chr3_2:85002235-85002254 None:intergenic 25.0%
!! TCACATATTTAGTTCAAAGA+TGG - chr3_2:85002279-85002298 None:intergenic 25.0%
! CTTTGAACTAAATATGTGAA+AGG + chr3_2:85002280-85002299 Msa0432770:intron 25.0%
! TGAAGATAATAGAGCAAAAA+GGG - chr3_2:85002495-85002514 None:intergenic 25.0%
! ATGAAGATAATAGAGCAAAA+AGG - chr3_2:85002496-85002515 None:intergenic 25.0%
! TTCTCCTTCTGATTATTATT+TGG + chr3_2:85002639-85002658 Msa0432770:intron 25.0%
!!! ATGGTAATATAAGGTTTTGT+TGG - chr3_2:85002752-85002771 None:intergenic 25.0%
! TTTCAATGAATGTGCTTTAT+GGG + chr3_2:85002815-85002834 Msa0432770:intron 25.0%
! GACAAATCTTAATGATCTTA+AGG + chr3_2:85002909-85002928 Msa0432770:CDS 25.0%
! TTCATTAGGTTTAATCTTCA+TGG + chr3_2:85003066-85003085 Msa0432770:intron 25.0%
! CACATTTATTAACCATGAAA+TGG - chr3_2:85003113-85003132 None:intergenic 25.0%
! TAAACTCATTTAGAAAGACA+AGG + chr3_2:85003204-85003223 Msa0432770:intron 25.0%
! ATACACAACTATCAATTATG+AGG - chr3_2:85003379-85003398 None:intergenic 25.0%
!!! AAAGTTTTGTATGGTTGATT+TGG + chr3_2:85004228-85004247 Msa0432770:three_prime_UTR 25.0%
!!! AAGTTTTGTATGGTTGATTT+GGG + chr3_2:85004229-85004248 Msa0432770:three_prime_UTR 25.0%
! TAAATGGAGATTATTCCAAT+CGG + chr3_2:85004271-85004290 Msa0432770:three_prime_UTR 25.0%
CAATTCAATCAAGTCTTTGA+AGG + chr3_2:84997934-84997953 Msa0432770:CDS 30.0%
!! TTGAATGTAATGTGTTGCTT+AGG + chr3_2:84997994-84998013 Msa0432770:intron 30.0%
CTGAGATTAATGAATTAGAG+AGG + chr3_2:84998100-84998119 Msa0432770:CDS 30.0%
TTGAAACAATGGAATAAGCA+AGG - chr3_2:84998262-84998281 None:intergenic 30.0%
CAAATATTCTAGACACTTGT+AGG - chr3_2:84998499-84998518 None:intergenic 30.0%
TGGTAAGACTATATGAGATA+AGG + chr3_2:84998541-84998560 Msa0432770:intron 30.0%
!! AGACATTGACTTCTTTAGTA+AGG + chr3_2:84998659-84998678 Msa0432770:intron 30.0%
! TAATGAGTTGGATCGAAATA+TGG + chr3_2:84998773-84998792 Msa0432770:intron 30.0%
GTTGGTTGTAATTAAAGAGA+TGG + chr3_2:84998859-84998878 Msa0432770:intron 30.0%
GTAATTAAAGAGATGGTACA+TGG + chr3_2:84998866-84998885 Msa0432770:intron 30.0%
ACAATATATTCCAGACAACT+AGG - chr3_2:84998941-84998960 None:intergenic 30.0%
! TTTTTCATTTATGCTTGTGC+AGG + chr3_2:84998974-84998993 Msa0432770:intron 30.0%
! AAGTGAAAAAGTTTTGCTAG+GGG + chr3_2:84999079-84999098 Msa0432770:intron 30.0%
ATCTATTCAACTACTCTTTC+TGG + chr3_2:84999126-84999145 Msa0432770:intron 30.0%
!! TATTTCCAAAAGAGCATTGT+AGG - chr3_2:84999229-84999248 None:intergenic 30.0%
ATTGAATTCGATCATTTCAC+AGG + chr3_2:84999278-84999297 Msa0432770:CDS 30.0%
ATCATTTCACAGGTATTCAT+CGG + chr3_2:84999288-84999307 Msa0432770:intron 30.0%
!!! GTGGTTTTATTACATCTCTT+AGG + chr3_2:84999655-84999674 Msa0432770:intron 30.0%
AAAGGCTTGGAAAAAAAGAA+AGG + chr3_2:84999715-84999734 Msa0432770:intron 30.0%
GAAAAAAAGAAAGGAGTAAG+TGG + chr3_2:84999724-84999743 Msa0432770:intron 30.0%
TATAAAACCCTTCTCATTTG+GGG + chr3_2:84999801-84999820 Msa0432770:intron 30.0%
GGGGAACTAAAAAATTGTAT+TGG + chr3_2:84999821-84999840 Msa0432770:intron 30.0%
CTAAAAAATTGTATTGGAGG+AGG + chr3_2:84999827-84999846 Msa0432770:intron 30.0%
GACAATGCATAAAATATGCA+AGG + chr3_2:84999951-84999970 Msa0432770:intron 30.0%
!! ATTTCTTTTGAGAAATGGAG+AGG - chr3_2:85000355-85000374 None:intergenic 30.0%
!! CCTTCATTTCTTTTGAGAAA+TGG - chr3_2:85000360-85000379 None:intergenic 30.0%
CCATTTCTCAAAAGAAATGA+AGG + chr3_2:85000357-85000376 Msa0432770:intron 30.0%
TACACCCAAAACTATAGTAA+TGG + chr3_2:85000447-85000466 Msa0432770:intron 30.0%
! GGTTCCATTACTATAGTTTT+GGG - chr3_2:85000454-85000473 None:intergenic 30.0%
TACTTCTCAAAAGATATGGA+GGG - chr3_2:85000475-85000494 None:intergenic 30.0%
TCTCTACTTCTCAAAAGATA+TGG - chr3_2:85000479-85000498 None:intergenic 30.0%
!! ATATCTTTTGAGAAGTAGAG+AGG + chr3_2:85000478-85000497 Msa0432770:intron 30.0%
! GCTAAAACTTGTTCAGAAAA+AGG - chr3_2:85000744-85000763 None:intergenic 30.0%
! TATAAAGCTTGTTCATTCCA+TGG + chr3_2:85000828-85000847 Msa0432770:CDS 30.0%
TTGTCAATACTGGAATTTCA+TGG - chr3_2:85001124-85001143 None:intergenic 30.0%
! TAATGTCTTGTTGTCAATAC+TGG - chr3_2:85001134-85001153 None:intergenic 30.0%
TAATTAAATGCAAGGGTCAA+GGG - chr3_2:85001165-85001184 None:intergenic 30.0%
ATAATTAAATGCAAGGGTCA+AGG - chr3_2:85001166-85001185 None:intergenic 30.0%
!!! GCATTAGATTTTTTGCTCTT+TGG + chr3_2:85001400-85001419 Msa0432770:intron 30.0%
TCATAGGTTTAATCTTCATG+GGG + chr3_2:85001434-85001453 Msa0432770:intron 30.0%
AAAAAAATCACGTGTGTGAA+TGG - chr3_2:85001610-85001629 None:intergenic 30.0%
GATGAAGATGACAAACAAAA+GGG - chr3_2:85001045-85001064 None:intergenic 30.0%
!!! GATTTTTAAGAAGTACCACT+AGG + chr3_2:85001909-85001928 Msa0432770:intron 30.0%
GGCTTGTAAAAACATTAGTA+TGG + chr3_2:85002164-85002183 Msa0432770:intron 30.0%
CCACTTATGTCTTAATGATT+TGG - chr3_2:85002251-85002270 None:intergenic 30.0%
CCAAATCATTAAGACATAAG+TGG + chr3_2:85002248-85002267 Msa0432770:intron 30.0%
AGACAGATGACATATGAAAT+GGG - chr3_2:85002399-85002418 None:intergenic 30.0%
AATAGAGCAAAAAGGGTTTA+AGG - chr3_2:85002488-85002507 None:intergenic 30.0%
GCATTTAAGAATCCTAATCA+GGG + chr3_2:85002578-85002597 Msa0432770:intron 30.0%
CTTTCAATGAATGTGCTTTA+TGG + chr3_2:85002814-85002833 Msa0432770:intron 30.0%
TCGTAGTTTCTGTACATATA+TGG - chr3_2:85002860-85002879 None:intergenic 30.0%
ATATGTACAGAAACTACGAA+AGG + chr3_2:85002861-85002880 Msa0432770:intron 30.0%
!!! TTTGGTGCCAAATTTTCATT+AGG + chr3_2:85003052-85003071 Msa0432770:intron 30.0%
GTTTAATCTTCATGGATTCA+TGG + chr3_2:85003074-85003093 Msa0432770:intron 30.0%
TTTATTAACCATGAAATGGG+AGG - chr3_2:85003109-85003128 None:intergenic 30.0%
TATTAGATAAACGGAGATCA+TGG - chr3_2:85003289-85003308 None:intergenic 30.0%
TGATCTCCGTTTATCTAATA+AGG + chr3_2:85003289-85003308 Msa0432770:intron 30.0%
GTGACACCTTATTAGATAAA+CGG - chr3_2:85003298-85003317 None:intergenic 30.0%
AACTATCAATTATGAGGTGA+GGG - chr3_2:85003373-85003392 None:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+AGG - chr3_2:85003529-85003548 None:intergenic 30.0%
AATATTTGCATCAGTCAAAG+CGG + chr3_2:85004058-85004077 Msa0432770:CDS 30.0%
!!! AGTTTTGTATGGTTGATTTG+GGG + chr3_2:85004230-85004249 Msa0432770:three_prime_UTR 30.0%
! TTACACAGTTTTCCTGTAAA+TGG + chr3_2:85004255-85004274 Msa0432770:three_prime_UTR 30.0%
TTGGAATAATCTCCATTTAC+AGG - chr3_2:85004270-85004289 None:intergenic 30.0%
AGAGAGAGAATCAATAAGGA+AGG + chr3_2:84997884-84997903 Msa0432770:CDS 35.0%
TCTTAGTTCAGGATCTTGAA+AGG + chr3_2:84998025-84998044 Msa0432770:intron 35.0%
AGGAAAATAGCAAATGACTG+TGG + chr3_2:84998120-84998139 Msa0432770:CDS 35.0%
AAGGATCATGAACTACTCAA+AGG - chr3_2:84998243-84998262 None:intergenic 35.0%
!!! AGTTTTTTCCCCTTTCTGTT+AGG + chr3_2:84998294-84998313 Msa0432770:intron 35.0%
TATTTGTATTCACGTTGCGT+TGG + chr3_2:84998513-84998532 Msa0432770:intron 35.0%
ACAACATTAGAGAGAGAGTT+GGG + chr3_2:84998573-84998592 Msa0432770:intron 35.0%
AGTCCCTATAGTAGAAAAGA+TGG + chr3_2:84998598-84998617 Msa0432770:intron 35.0%
! CCACCATCTTTTCTACTATA+GGG - chr3_2:84998604-84998623 None:intergenic 35.0%
! TCCACCATCTTTTCTACTAT+AGG - chr3_2:84998605-84998624 None:intergenic 35.0%
!! TAGAAAAGATGGTGGAAACT+AGG + chr3_2:84998609-84998628 Msa0432770:intron 35.0%
AGTCAAATTACTAGAGGTAG+AGG + chr3_2:84998703-84998722 Msa0432770:intron 35.0%
AAAGAGATGGTACATGGATA+AGG + chr3_2:84998872-84998891 Msa0432770:intron 35.0%
AAAGCAATGACATGCATAAC+AGG + chr3_2:84998897-84998916 Msa0432770:intron 35.0%
TAACAGGTTTGATGAGAATG+TGG + chr3_2:84998913-84998932 Msa0432770:intron 35.0%
! AGTGAAAAAGTTTTGCTAGG+GGG + chr3_2:84999080-84999099 Msa0432770:intron 35.0%
! TTCTACCTACAATGCTCTTT+TGG + chr3_2:84999221-84999240 Msa0432770:CDS 35.0%
GAGGGATACATTTGATATGA+GGG - chr3_2:84999379-84999398 None:intergenic 35.0%
AGAGGGATACATTTGATATG+AGG - chr3_2:84999380-84999399 None:intergenic 35.0%
CATATCAAATGTATCCCTCT+CGG + chr3_2:84999380-84999399 Msa0432770:intron 35.0%
ATAGAGCAAATAGAGAAGAG+AGG - chr3_2:84999408-84999427 None:intergenic 35.0%
TCTATTTGCTCTATCTGTTC+AGG + chr3_2:84999414-84999433 Msa0432770:intron 35.0%
CTATTTGCTCTATCTGTTCA+GGG + chr3_2:84999415-84999434 Msa0432770:intron 35.0%
TACTAAGAACAAGATGTGCT+AGG - chr3_2:84999501-84999520 None:intergenic 35.0%
AAGAAATAGAGGACATTGGA+AGG + chr3_2:84999747-84999766 Msa0432770:intron 35.0%
ATAAAACCCTTCTCATTTGG+GGG + chr3_2:84999802-84999821 Msa0432770:intron 35.0%
TGCATAAAATATGCAAGGTC+CGG + chr3_2:84999956-84999975 Msa0432770:intron 35.0%
!!! TTTTTTTTTTGTGGTGGCCA+GGG - chr3_2:84999990-85000009 None:intergenic 35.0%
!!! TTTTTTTTTTTGTGGTGGCC+AGG - chr3_2:84999991-85000010 None:intergenic 35.0%
!! GAAACCTTAAGGCTTTGTTT+GGG - chr3_2:85000164-85000183 None:intergenic 35.0%
! GGGTTCCATTACTATAGTTT+TGG - chr3_2:85000455-85000474 None:intergenic 35.0%
CTACTTCTCAAAAGATATGG+AGG - chr3_2:85000476-85000495 None:intergenic 35.0%
AAGGTAGGGAAAAACATTGA+AGG - chr3_2:85000769-85000788 None:intergenic 35.0%
CTTGAAACTGCAATAAGGTA+GGG - chr3_2:85000783-85000802 None:intergenic 35.0%
TCTTGAAACTGCAATAAGGT+AGG - chr3_2:85000784-85000803 None:intergenic 35.0%
TACCTTATTGCAGTTTCAAG+AGG + chr3_2:85000783-85000802 Msa0432770:intron 35.0%
!! GTGTTGTGTTGATTTGACTT+TGG + chr3_2:85000932-85000951 Msa0432770:intron 35.0%
TTAACAAAAAGAGAAGCAGG+AGG - chr3_2:85001022-85001041 None:intergenic 35.0%
GAGTTAACAAAAAGAGAAGC+AGG - chr3_2:85001025-85001044 None:intergenic 35.0%
GACCATCATACAGAATGATA+AGG + chr3_2:85001202-85001221 Msa0432770:intron 35.0%
CTCCTTATCATTCTGTATGA+TGG - chr3_2:85001207-85001226 None:intergenic 35.0%
CAGAATGATAAGGAGTTAGA+AGG + chr3_2:85001212-85001231 Msa0432770:intron 35.0%
AATGATAAGGAGTTAGAAGG+TGG + chr3_2:85001215-85001234 Msa0432770:intron 35.0%
!! GTGATTGAAAAGTACCACTA+AGG + chr3_2:85001298-85001317 Msa0432770:intron 35.0%
AAAAAATCCTGAAGCCTTAG+TGG - chr3_2:85001315-85001334 None:intergenic 35.0%
GCAGTAAGACATGTAATGTA+CGG - chr3_2:85001341-85001360 None:intergenic 35.0%
CAAAAAATCTAATGCCACCA+AGG - chr3_2:85001395-85001414 None:intergenic 35.0%
!!! TTTGGTGCCAACTTTTTCAT+AGG + chr3_2:85001418-85001437 Msa0432770:intron 35.0%
AATCATGAAATGGGGGAAAA+AGG - chr3_2:85001461-85001480 None:intergenic 35.0%
GTGTATCTTCTTTCTGTATG+AGG + chr3_2:85001488-85001507 Msa0432770:intron 35.0%
TGACAAACAAAAGGGACAAA+AGG - chr3_2:85001648-85001667 None:intergenic 35.0%
CGATGAAGATGACAAACAAA+AGG - chr3_2:85001657-85001676 None:intergenic 35.0%
!! TTATCAGTCTATGATGGACT+TGG - chr3_2:85001818-85001837 None:intergenic 35.0%
AAGTCCATCATAGACTGATA+AGG + chr3_2:85001817-85001836 Msa0432770:intron 35.0%
AACTCCTTATCAGTCTATGA+TGG - chr3_2:85001824-85001843 None:intergenic 35.0%
TAGACTGATAAGGAGTTAGA+AGG + chr3_2:85001827-85001846 Msa0432770:intron 35.0%
AAAATATTCCTGAAGCCTAG+TGG - chr3_2:85001927-85001946 None:intergenic 35.0%
TGTACAATGAGTGTAACATC+TGG - chr3_2:85002067-85002086 None:intergenic 35.0%
! TGAGAAAGTCTCGTTTTATG+TGG + chr3_2:85002092-85002111 Msa0432770:intron 35.0%
! AAGTCTCGTTTTATGTGGTT+TGG + chr3_2:85002097-85002116 Msa0432770:intron 35.0%
! AGTCTCGTTTTATGTGGTTT+GGG + chr3_2:85002098-85002117 Msa0432770:intron 35.0%
ATGTTTAGAGAAAGCCTGTA+TGG + chr3_2:85002122-85002141 Msa0432770:intron 35.0%
TAAACATGCACAAACCATAC+AGG - chr3_2:85002139-85002158 None:intergenic 35.0%
TAGTATGGATGGTTGATTAG+AGG + chr3_2:85002179-85002198 Msa0432770:intron 35.0%
! GATTTTATGGAGTCGATTGA+TGG + chr3_2:85002302-85002321 Msa0432770:intron 35.0%
CAGACAGATGACATATGAAA+TGG - chr3_2:85002400-85002419 None:intergenic 35.0%
TTCATATGTCATCTGTCTGT+TGG + chr3_2:85002401-85002420 Msa0432770:intron 35.0%
TCATATGTCATCTGTCTGTT+GGG + chr3_2:85002402-85002421 Msa0432770:intron 35.0%
!!! ACTGCTTCAACTTGTTTTGT+TGG + chr3_2:85002556-85002575 Msa0432770:intron 35.0%
GGCATTTAAGAATCCTAATC+AGG + chr3_2:85002577-85002596 Msa0432770:intron 35.0%
AAACTACGAAAGGTTCAACT+AGG + chr3_2:85002871-85002890 Msa0432770:CDS 35.0%
AACTACGAAAGGTTCAACTA+GGG + chr3_2:85002872-85002891 Msa0432770:CDS 35.0%
! TTCTCTGATGAAAGCTTTTC+AGG + chr3_2:85002972-85002991 Msa0432770:intron 35.0%
AAACTATTCTACCACCAAAG+CGG - chr3_2:85003026-85003045 None:intergenic 35.0%
ATATCAAACCTCTGCAAGAT+TGG - chr3_2:85003335-85003354 None:intergenic 35.0%
TTGCAGAGGTTTGATATTCA+TGG + chr3_2:85003338-85003357 Msa0432770:intron 35.0%
TGCAGAGGTTTGATATTCAT+GGG + chr3_2:85003339-85003358 Msa0432770:intron 35.0%
CAACTATCAATTATGAGGTG+AGG - chr3_2:85003374-85003393 None:intergenic 35.0%
TAAGCTCACTTAGAAAGACA+AGG + chr3_2:85003474-85003493 Msa0432770:intron 35.0%
TTAAATACTCTGGTCCTGTT+TGG + chr3_2:85003512-85003531 Msa0432770:intron 35.0%
AAACTATTTGGGAGAGCTTA+TGG + chr3_2:85003576-85003595 Msa0432770:intron 35.0%
! TTCCAGCTAAAGTGTCAATT+CGG - chr3_2:85003852-85003871 None:intergenic 35.0%
!! CTGCTTGTTGTCATTCTTAT+TGG + chr3_2:85003903-85003922 Msa0432770:intron 35.0%
AATAGCTTTCTTTAATGGCC+AGG + chr3_2:85003957-85003976 Msa0432770:intron 35.0%
! AGACGTCAGCAATTTTCATT+TGG - chr3_2:85004019-85004038 None:intergenic 35.0%
ATCTTGTTAACCCATAACCA+TGG - chr3_2:85004111-85004130 None:intergenic 35.0%
CTTAACACAACTTCGATGAG+TGG + chr3_2:84997791-84997810 Msa0432770:exon 40.0%
AACTTCGATGAGTGGCAATT+TGG + chr3_2:84997799-84997818 Msa0432770:exon 40.0%
! TGGTTTGTGAGATTGATTGC+CGG + chr3_2:84997828-84997847 Msa0432770:CDS 40.0%
AGGATATCCACTCTTAGTTC+AGG + chr3_2:84998014-84998033 Msa0432770:intron 40.0%
TCAAGATCCTGAACTAAGAG+TGG - chr3_2:84998024-84998043 None:intergenic 40.0%
AGTTCAGGATCTTGAAAGGA+AGG + chr3_2:84998029-84998048 Msa0432770:intron 40.0%
CATTCTCTTAGCGAATCACT+TGG + chr3_2:84998165-84998184 Msa0432770:CDS 40.0%
AGCAAGTTCCTAACAGAAAG+GGG - chr3_2:84998305-84998324 None:intergenic 40.0%
CAGCAAGTTCCTAACAGAAA+GGG - chr3_2:84998306-84998325 None:intergenic 40.0%
CTTACTGGACGATTTCTGAT+TGG - chr3_2:84998381-84998400 None:intergenic 40.0%
GACAACATTAGAGAGAGAGT+TGG + chr3_2:84998572-84998591 Msa0432770:intron 40.0%
CAACATTAGAGAGAGAGTTG+GGG + chr3_2:84998574-84998593 Msa0432770:intron 40.0%
CCCTATAGTAGAAAAGATGG+TGG + chr3_2:84998601-84998620 Msa0432770:intron 40.0%
AGTAAGGAGAGTAGATCAGA+TGG + chr3_2:84998675-84998694 Msa0432770:intron 40.0%
GAGGGTAGTCAAATTACTAG+AGG + chr3_2:84998697-84998716 Msa0432770:intron 40.0%
AGAACTGTATGCTCAAATCC+AGG + chr3_2:84999014-84999033 Msa0432770:CDS 40.0%
TTGGTATTTGCCACTGTACA+GGG + chr3_2:84999171-84999190 Msa0432770:intron 40.0%
ACAGGTATTCATCGGAGAAT+TGG + chr3_2:84999296-84999315 Msa0432770:intron 40.0%
GGAGAACAGATATGTACAGA+AGG - chr3_2:84999480-84999499 None:intergenic 40.0%
GGTAAATGTAAGAAGGCAAG+TGG - chr3_2:84999586-84999605 None:intergenic 40.0%
!! TTAGGCTTTGTTTGCGAGTT+TGG + chr3_2:84999673-84999692 Msa0432770:intron 40.0%
GGAGTAAGTGGAAGAAATAG+AGG + chr3_2:84999736-84999755 Msa0432770:intron 40.0%
GTGGAAGAAATAGAGGACAT+TGG + chr3_2:84999743-84999762 Msa0432770:intron 40.0%
AAATAGAGGACATTGGAAGG+AGG + chr3_2:84999750-84999769 Msa0432770:intron 40.0%
TTAGTTCCCCCAAATGAGAA+GGG - chr3_2:84999811-84999830 None:intergenic 40.0%
! TTTAGTTCCCCCAAATGAGA+AGG - chr3_2:84999812-84999831 None:intergenic 40.0%
! ATTGTATTGGAGGAGGGTTT+TGG + chr3_2:84999834-84999853 Msa0432770:intron 40.0%
! TTGTATTGGAGGAGGGTTTT+GGG + chr3_2:84999835-84999854 Msa0432770:intron 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr3_2:84999957-84999976 Msa0432770:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG + chr3_2:84999958-84999977 Msa0432770:intron 40.0%
TTTGGGGGGAGAGAAATATA+GGG - chr3_2:85000114-85000133 None:intergenic 40.0%
!! TAAGGCTTTGTTTGGGAGTT+TGG - chr3_2:85000157-85000176 None:intergenic 40.0%
AACTCCCAAACAAAGCCTTA+AGG + chr3_2:85000157-85000176 Msa0432770:intron 40.0%
!! GGAAACCTTAAGGCTTTGTT+TGG - chr3_2:85000165-85000184 None:intergenic 40.0%
!!! AGTATTTTGGGTTCGAAGCA+TGG + chr3_2:85000203-85000222 Msa0432770:intron 40.0%
GATCCACACTCGATTAATCA+AGG + chr3_2:85000500-85000519 Msa0432770:intron 40.0%
! AAGCTTGTTCATTCCATGGA+AGG + chr3_2:85000832-85000851 Msa0432770:CDS 40.0%
TTCCATGGAAGGAATTGTCA+AGG + chr3_2:85000843-85000862 Msa0432770:CDS 40.0%
TCCATGGAAGGAATTGTCAA+GGG + chr3_2:85000844-85000863 Msa0432770:CDS 40.0%
AATTGTCAAGGGAAGTGAAC+AGG + chr3_2:85000855-85000874 Msa0432770:CDS 40.0%
ATTTCATGGCGCTATAGAAG+TGG - chr3_2:85001110-85001129 None:intergenic 40.0%
TCATTCTGTATGATGGTCGA+TGG - chr3_2:85001200-85001219 None:intergenic 40.0%
!! AAAAGTACCACTAAGGCTTC+AGG + chr3_2:85001305-85001324 Msa0432770:intron 40.0%
AAAATCTAATGCCACCAAGG+CGG - chr3_2:85001392-85001411 None:intergenic 40.0%
!! GCTGAGATAAGAGTGTTATG+TGG + chr3_2:85001998-85002017 Msa0432770:intron 40.0%
!! AAGAGTGTTATGTGGATGAG+TGG + chr3_2:85002006-85002025 Msa0432770:intron 40.0%
GGTTTGTGCATGTTTAGAGA+AGG + chr3_2:85002143-85002162 Msa0432770:intron 40.0%
TATGGATGGTTGATTAGAGG+CGG + chr3_2:85002182-85002201 Msa0432770:intron 40.0%
CGGGAAAGATCAATTGTTAG+AGG + chr3_2:85002202-85002221 Msa0432770:intron 40.0%
TGACATATGAAATGGGTGCA+TGG - chr3_2:85002392-85002411 None:intergenic 40.0%
GTTACTACTACTGTTGCTGT+TGG - chr3_2:85002466-85002485 None:intergenic 40.0%
TAAGAATCCTAATCAGGGAC+TGG + chr3_2:85002583-85002602 Msa0432770:intron 40.0%
TTCTAATCCAGTCCCTGATT+AGG - chr3_2:85002593-85002612 None:intergenic 40.0%
TTATTATATCGTCGCCGCTT+TGG + chr3_2:85003009-85003028 Msa0432770:intron 40.0%
AACCATGAAATGGGAGGAAA+AGG - chr3_2:85003103-85003122 None:intergenic 40.0%
GCAGAGGTTTGATATTCATG+GGG + chr3_2:85003340-85003359 Msa0432770:intron 40.0%
CAATTATGAGGTGAGGGAAA+AGG - chr3_2:85003367-85003386 None:intergenic 40.0%
! TCTGGTGTTGAAGCACTATT+TGG - chr3_2:85003771-85003790 None:intergenic 40.0%
TTCCGAATTGACACTTTAGC+TGG + chr3_2:85003847-85003866 Msa0432770:intron 40.0%
AATGCTCCAAGGAGAAGTTA+CGG + chr3_2:85003983-85004002 Msa0432770:CDS 40.0%
AGCTCACAATACCATGGTTA+TGG + chr3_2:85004097-85004116 Msa0432770:three_prime_UTR 40.0%
GCTCACAATACCATGGTTAT+GGG + chr3_2:85004098-85004117 Msa0432770:three_prime_UTR 40.0%
TTATAAACTGATGCGAGCTG+CGG + chr3_2:85004141-85004160 Msa0432770:three_prime_UTR 40.0%
AGATTATTCCAATCGGCCAA+AGG + chr3_2:85004278-85004297 Msa0432770:three_prime_UTR 40.0%
GAGTGGCAATTTGGATGAAC+TGG + chr3_2:84997808-84997827 Msa0432770:CDS 45.0%
TTGCCGGAAGATGAATGTTG+TGG + chr3_2:84997844-84997863 Msa0432770:CDS 45.0%
GCTCCACAACATTCATCTTC+CGG - chr3_2:84997850-84997869 None:intergenic 45.0%
GCAGCAAGTTCCTAACAGAA+AGG - chr3_2:84998307-84998326 None:intergenic 45.0%
!! AGGAACTTGCTGCTAGACTA+AGG + chr3_2:84998314-84998333 Msa0432770:intron 45.0%
!! GGAACTTGCTGCTAGACTAA+GGG + chr3_2:84998315-84998334 Msa0432770:intron 45.0%
TGGACGATTTCTGATTGGCA+CGG - chr3_2:84998376-84998395 None:intergenic 45.0%
TTCACGTTGCGTTGGATATG+TGG + chr3_2:84998521-84998540 Msa0432770:intron 45.0%
!! AGATGGTGGAAACTAGGCTT+AGG + chr3_2:84998615-84998634 Msa0432770:intron 45.0%
AAGGAGAGTAGATCAGATGG+AGG + chr3_2:84998678-84998697 Msa0432770:intron 45.0%
AGGAGAGTAGATCAGATGGA+GGG + chr3_2:84998679-84998698 Msa0432770:intron 45.0%
AACTCTTACCCCACTATGTG+GGG - chr3_2:84998842-84998861 None:intergenic 45.0%
CAACTCTTACCCCACTATGT+GGG - chr3_2:84998843-84998862 None:intergenic 45.0%
GAATGTGGAACCTAGTTGTC+TGG + chr3_2:84998928-84998947 Msa0432770:intron 45.0%
CTGTACAGTGGCAAATACCA+AGG - chr3_2:84999172-84999191 None:intergenic 45.0%
CTTGGTATTTGCCACTGTAC+AGG + chr3_2:84999170-84999189 Msa0432770:intron 45.0%
! TCGATGTTTTCCCTGTACAG+TGG - chr3_2:84999184-84999203 None:intergenic 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG + chr3_2:84999677-84999696 Msa0432770:intron 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG + chr3_2:84999678-84999697 Msa0432770:intron 45.0%
ACATTGGAAGGAGGAGCTTT+GGG + chr3_2:84999759-84999778 Msa0432770:intron 45.0%
! TGTATTGGAGGAGGGTTTTG+GGG + chr3_2:84999836-84999855 Msa0432770:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + chr3_2:84999929-84999948 Msa0432770:intron 45.0%
TTGGGGGGAGAGAAATATAG+GGG - chr3_2:85000113-85000132 None:intergenic 45.0%
! CTTTGGGGGGAGAGAAATAT+AGG - chr3_2:85000115-85000134 None:intergenic 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - chr3_2:85000152-85000171 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - chr3_2:85000153-85000172 None:intergenic 45.0%
AGGGAAAGTGGGAAACCTTA+AGG - chr3_2:85000175-85000194 None:intergenic 45.0%
!!! TCCCTCATGCGAGAGTATTT+TGG + chr3_2:85000190-85000209 Msa0432770:intron 45.0%
CCCAAAATACTCTCGCATGA+GGG - chr3_2:85000194-85000213 None:intergenic 45.0%
!!! CCCTCATGCGAGAGTATTTT+GGG + chr3_2:85000191-85000210 Msa0432770:intron 45.0%
ACCCAAAATACTCTCGCATG+AGG - chr3_2:85000195-85000214 None:intergenic 45.0%
AGTGGCGAACATAGAATTCC+TGG + chr3_2:85000308-85000327 Msa0432770:intron 45.0%
AATTCCTGGCCAACTGATCA+GGG + chr3_2:85000322-85000341 Msa0432770:intron 45.0%
CCTCCTTGATTAATCGAGTG+TGG - chr3_2:85000506-85000525 None:intergenic 45.0%
CCACACTCGATTAATCAAGG+AGG + chr3_2:85000503-85000522 Msa0432770:intron 45.0%
AGTTGTTGGGTGAAGAGACT+TGG + chr3_2:85000566-85000585 Msa0432770:intron 45.0%
GTTGTTGGGTGAAGAGACTT+GGG + chr3_2:85000567-85000586 Msa0432770:intron 45.0%
GGCCTCTTGAAACTGCAATA+AGG - chr3_2:85000788-85000807 None:intergenic 45.0%
! ACGACCATCAGTGCTACTAA+AGG - chr3_2:85000809-85000828 None:intergenic 45.0%
TCCCTTGACAATTCCTTCCA+TGG - chr3_2:85000848-85000867 None:intergenic 45.0%
AGAGTTAACTGCAGCTCTTG+AGG + chr3_2:85000910-85000929 Msa0432770:intron 45.0%
! GCGGCGTTTTACACATTTTG+CGG - chr3_2:85001082-85001101 None:intergenic 45.0%
GCAAAATGTGTAAAACGCCG+CGG + chr3_2:85001081-85001100 Msa0432770:intron 45.0%
! TGTATGATGGTCGATGGACT+TGG - chr3_2:85001194-85001213 None:intergenic 45.0%
ACGTGTGTGAATGGTACAGA+AGG - chr3_2:85001601-85001620 None:intergenic 45.0%
! CCTATATGTGGGTTAACGAG+CGG - chr3_2:85001712-85001731 None:intergenic 45.0%
ATTTCGCAGAGCTATAGCAG+CGG - chr3_2:85001741-85001760 None:intergenic 45.0%
!! AAGAAGTACCACTAGGCTTC+AGG + chr3_2:85001916-85001935 Msa0432770:intron 45.0%
ATGGATGGTTGATTAGAGGC+GGG + chr3_2:85002183-85002202 Msa0432770:intron 45.0%
! TACTGTTGCTGTTGGCAAAG+GGG - chr3_2:85002458-85002477 None:intergenic 45.0%
! CTACTGTTGCTGTTGGCAAA+GGG - chr3_2:85002459-85002478 None:intergenic 45.0%
! ACTACTGTTGCTGTTGGCAA+AGG - chr3_2:85002460-85002479 None:intergenic 45.0%
GCGGCGACGATATAATAAAC+TGG - chr3_2:85003007-85003026 None:intergenic 45.0%
! GACCTTTTCCTCCCATTTCA+TGG + chr3_2:85003098-85003117 Msa0432770:intron 45.0%
AGCAAGCCGTGTATCTGATA+TGG + chr3_2:85003799-85003818 Msa0432770:intron 45.0%
CCGATGCCATATCAGATACA+CGG - chr3_2:85003808-85003827 None:intergenic 45.0%
CCGTGTATCTGATATGGCAT+CGG + chr3_2:85003805-85003824 Msa0432770:intron 45.0%
!! TCTCCTTGGAGCATTTTTCC+TGG - chr3_2:85003978-85003997 None:intergenic 45.0%
TTGACACCGTAACTTCTCCT+TGG - chr3_2:85003992-85004011 None:intergenic 45.0%
GAAAATTGCTGACGTCTCTG+AGG + chr3_2:85004022-85004041 Msa0432770:CDS 45.0%
GTCACAAGCTCACAATACCA+TGG + chr3_2:85004091-85004110 Msa0432770:three_prime_UTR 45.0%
ATTCCAATCGGCCAAAGGAT+TGG + chr3_2:85004283-85004302 Msa0432770:three_prime_UTR 45.0%
TTCCAATCGGCCAAAGGATT+GGG + chr3_2:85004284-85004303 Msa0432770:three_prime_UTR 45.0%
CGATTTCTGATTGGCACGGT+AGG - chr3_2:84998372-84998391 None:intergenic 50.0%
TGGTGGAAACTAGGCTTAGG+CGG + chr3_2:84998618-84998637 Msa0432770:intron 50.0%
ACTATGTGGGGTCAGCTACA+TGG - chr3_2:84998830-84998849 None:intergenic 50.0%
ATGTAGCTGACCCCACATAG+TGG + chr3_2:84998829-84998848 Msa0432770:intron 50.0%
TGTAGCTGACCCCACATAGT+GGG + chr3_2:84998830-84998849 Msa0432770:intron 50.0%
CCAACTCTTACCCCACTATG+TGG - chr3_2:84998844-84998863 None:intergenic 50.0%
! CCACATAGTGGGGTAAGAGT+TGG + chr3_2:84998841-84998860 Msa0432770:intron 50.0%
GCTTGTGCAGGTATGAACAC+CGG + chr3_2:84998986-84999005 Msa0432770:intron 50.0%
!! GAGCATACAGTTCTGAGAGC+CGG - chr3_2:84999008-84999027 None:intergenic 50.0%
! ATTGGATGAAGGCACGTGAG+TGG + chr3_2:84999636-84999655 Msa0432770:intron 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG + chr3_2:84999676-84999695 Msa0432770:intron 50.0%
TTTGCGAGTTTGGAGGGGAA+GGG + chr3_2:84999683-84999702 Msa0432770:intron 50.0%
GACATTGGAAGGAGGAGCTT+TGG + chr3_2:84999758-84999777 Msa0432770:intron 50.0%
CATTGGAAGGAGGAGCTTTG+GGG + chr3_2:84999760-84999779 Msa0432770:intron 50.0%
!! GTATTGGAGGAGGGTTTTGG+GGG + chr3_2:84999837-84999856 Msa0432770:intron 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - chr3_2:85000154-85000173 None:intergenic 50.0%
ACTCTCGCATGAGGGAAAGT+GGG - chr3_2:85000186-85000205 None:intergenic 50.0%
TACTCTCGCATGAGGGAAAG+TGG - chr3_2:85000187-85000206 None:intergenic 50.0%
GAATTCCTGGCCAACTGATC+AGG + chr3_2:85000321-85000340 Msa0432770:intron 50.0%
! GAGGCCTTTAGTAGCACTGA+TGG + chr3_2:85000802-85000821 Msa0432770:CDS 50.0%
GGGACAAAAGGAGAAGCAAG+AGG - chr3_2:85001636-85001655 None:intergenic 50.0%
! GCGGAGTTTCGCGTATTTTG+AGG - chr3_2:85001693-85001712 None:intergenic 50.0%
! GAGTCGATTGATGGCTGACT+TGG + chr3_2:85002311-85002330 Msa0432770:intron 50.0%
!! TCGATTGATGGCTGACTTGG+TGG + chr3_2:85002314-85002333 Msa0432770:intron 50.0%
GATAGATATGCCGCAGCAGT+CGG + chr3_2:85002931-85002950 Msa0432770:CDS 50.0%
! TTATATCGTCGCCGCTTTGG+TGG + chr3_2:85003012-85003031 Msa0432770:intron 50.0%
TGGCCAGGAAAAATGCTCCA+AGG + chr3_2:85003972-85003991 Msa0432770:intron 50.0%
CAGTCAAAGCGGATCGATGA+TGG + chr3_2:85004069-85004088 Msa0432770:CDS 50.0%
TCCAATCGGCCAAAGGATTG+GGG + chr3_2:85004285-85004304 Msa0432770:three_prime_UTR 50.0%
! ATTGGAGTGCCCCAATCCTT+TGG - chr3_2:85004297-85004316 None:intergenic 50.0%
GTAGCTGACCCCACATAGTG+GGG + chr3_2:84998831-84998850 Msa0432770:intron 55.0%
!! AGAGAAGAGAGGCACCGAGA+GGG - chr3_2:84999397-84999416 None:intergenic 55.0%
!! TAGAGAAGAGAGGCACCGAG+AGG - chr3_2:84999398-84999417 None:intergenic 55.0%
GTTTGCGAGTTTGGAGGGGA+AGG + chr3_2:84999682-84999701 Msa0432770:intron 55.0%
GAGTTTGGAGGGGAAGGGAA+GGG + chr3_2:84999688-84999707 Msa0432770:intron 55.0%
AGGGAAGGGAAGGAAAGGCT+TGG + chr3_2:84999702-84999721 Msa0432770:intron 55.0%
!!! GAGGAGGGTTTTGGGGGTTT+GGG + chr3_2:84999843-84999862 Msa0432770:intron 55.0%
!!! AGGGTTTTGGGGGTTTGGGA+GGG + chr3_2:84999847-84999866 Msa0432770:intron 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr3_2:84999927-84999946 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr3_2:84999924-84999943 Msa0432770:intron 55.0%
! AGGGGAAGGAAAGGCTTTGG+GGG - chr3_2:85000129-85000148 None:intergenic 55.0%
GAGGGGAAGGAAAGGCTTTG+GGG - chr3_2:85000130-85000149 None:intergenic 55.0%
GGAGGGGAAGGAAAGGCTTT+GGG - chr3_2:85000131-85000150 None:intergenic 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG - chr3_2:85000147-85000166 None:intergenic 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG - chr3_2:85000148-85000167 None:intergenic 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG - chr3_2:85000149-85000168 None:intergenic 55.0%
CTGGCCAACTGATCAGGGTA+GGG + chr3_2:85000327-85000346 Msa0432770:intron 55.0%
GGATCCCTACCCTGATCAGT+TGG - chr3_2:85000334-85000353 None:intergenic 55.0%
CGCTATAGAAGTGGTAGCCG+CGG - chr3_2:85001101-85001120 None:intergenic 55.0%
GGGTGCATGGCTGAATGCTA+TGG - chr3_2:85002379-85002398 None:intergenic 55.0%
! CTTATGCTCACCGACTGCTG+CGG - chr3_2:85002944-85002963 None:intergenic 55.0%
GCACAGTGCCAATCTTGCAG+AGG + chr3_2:85003324-85003343 Msa0432770:intron 55.0%
!! ACGGCTTGCTGTAGATCGTC+TGG - chr3_2:85003789-85003808 None:intergenic 55.0%
CGAGTTTGGAGGGGAAGGGA+AGG + chr3_2:84999687-84999706 Msa0432770:intron 60.0%
TTGGAGGGGAAGGGAAGGGA+AGG + chr3_2:84999692-84999711 Msa0432770:intron 60.0%
GGGGAAGGGAAGGGAAGGAA+AGG + chr3_2:84999697-84999716 Msa0432770:intron 60.0%
!!! GGAGGAGGGTTTTGGGGGTT+TGG + chr3_2:84999842-84999861 Msa0432770:intron 60.0%
!!! GAGGGTTTTGGGGGTTTGGG+AGG + chr3_2:84999846-84999865 Msa0432770:intron 60.0%
AAGGTCCGGGGTTCAAACCC+TGG + chr3_2:84999970-84999989 Msa0432770:intron 60.0%
!! GGGGAAGGAAAGGCTTTGGG+GGG - chr3_2:85000128-85000147 None:intergenic 60.0%
GGGAGGGGAAGGAAAGGCTT+TGG - chr3_2:85000132-85000151 None:intergenic 60.0%
TTGGAGGGGAGGGGAAGGAA+AGG - chr3_2:85000138-85000157 None:intergenic 60.0%
CCTACCCTGATCAGTTGGCC+AGG - chr3_2:85000329-85000348 None:intergenic 60.0%
CCTGGCCAACTGATCAGGGT+AGG + chr3_2:85000326-85000345 Msa0432770:intron 60.0%
!! GAAACTAGAAGGCGCCGCCT+TGG + chr3_2:85001375-85001394 Msa0432770:intron 60.0%
GCCCCAATCCTTTGGCCGAT+TGG - chr3_2:85004289-85004308 None:intergenic 60.0%
GGTGGCCAGGGTTTGAACCC+CGG - chr3_2:84999978-84999997 None:intergenic 65.0%
GGAGTTTGGAGGGGAGGGGA+AGG - chr3_2:85000143-85000162 None:intergenic 65.0%
!! ACTAGAAGGCGCCGCCTTGG+TGG + chr3_2:85001378-85001397 Msa0432770:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 84997732 85004421 84997732 ID=Msa0432770;Name=Msa0432770
chr3_2 mRNA 84997732 85004421 84997732 ID=Msa0432770-mRNA-1;Parent=Msa0432770;Name=Msa0432770-mRNA-1;_AED=0.06;_eAED=0.06;_QI=74|0.85|0.87|1|1|1|8|333|274
chr3_2 exon 84997732 84997955 84997732 ID=Msa0432770-mRNA-1:exon:24161;Parent=Msa0432770-mRNA-1
chr3_2 exon 84998036 84998209 84998036 ID=Msa0432770-mRNA-1:exon:24162;Parent=Msa0432770-mRNA-1
chr3_2 exon 84998316 84998395 84998316 ID=Msa0432770-mRNA-1:exon:24163;Parent=Msa0432770-mRNA-1
chr3_2 exon 84998996 84999035 84998996 ID=Msa0432770-mRNA-1:exon:24164;Parent=Msa0432770-mRNA-1
chr3_2 exon 84999192 84999299 84999192 ID=Msa0432770-mRNA-1:exon:24165;Parent=Msa0432770-mRNA-1
chr3_2 exon 85000796 85000876 85000796 ID=Msa0432770-mRNA-1:exon:24166;Parent=Msa0432770-mRNA-1
chr3_2 exon 85002871 85002952 85002871 ID=Msa0432770-mRNA-1:exon:24167;Parent=Msa0432770-mRNA-1
chr3_2 exon 85003979 85004421 85003979 ID=Msa0432770-mRNA-1:exon:24168;Parent=Msa0432770-mRNA-1
chr3_2 five_prime_UTR 84997732 84997805 84997732 ID=Msa0432770-mRNA-1:five_prime_utr;Parent=Msa0432770-mRNA-1
chr3_2 CDS 84997806 84997955 84997806 ID=Msa0432770-mRNA-1:cds;Parent=Msa0432770-mRNA-1
chr3_2 CDS 84998036 84998209 84998036 ID=Msa0432770-mRNA-1:cds;Parent=Msa0432770-mRNA-1
chr3_2 CDS 84998316 84998395 84998316 ID=Msa0432770-mRNA-1:cds;Parent=Msa0432770-mRNA-1
chr3_2 CDS 84998996 84999035 84998996 ID=Msa0432770-mRNA-1:cds;Parent=Msa0432770-mRNA-1
chr3_2 CDS 84999192 84999299 84999192 ID=Msa0432770-mRNA-1:cds;Parent=Msa0432770-mRNA-1
chr3_2 CDS 85000796 85000876 85000796 ID=Msa0432770-mRNA-1:cds;Parent=Msa0432770-mRNA-1
chr3_2 CDS 85002871 85002952 85002871 ID=Msa0432770-mRNA-1:cds;Parent=Msa0432770-mRNA-1
chr3_2 CDS 85003979 85004088 85003979 ID=Msa0432770-mRNA-1:cds;Parent=Msa0432770-mRNA-1
chr3_2 three_prime_UTR 85004089 85004421 85004089 ID=Msa0432770-mRNA-1:three_prime_utr;Parent=Msa0432770-mRNA-1
Gene Sequence

>Msa0432770

ATGAGTGGCAATTTGGATGAACTGGTTTGTGAGATTGATTGCCGGAAGATGAATGTTGTGGAGCAGTTAGATGAATTAAGAGAGAGAATCAATAAGGAAGGTGTTGATTCTTCTGTGCACAAGTTGTACAATTCAATCAAGTCTTTGAAGGATCTTGAAAGGAAGGAAAATCAGTTTCTGTTCAAACGCGATTCTAAGCATTCAGAACTTCAATCTGAGATTAATGAATTAGAGAGGAAAATAGCAAATGACTGTGGTGATGATAGCAAGAGTCTTCATCATTCTCTTAGCGAATCACTTGGAAGAGTTGATTTGATGAAAAAGGAACTTGCTGCTAGACTAAGGGATGTAGTAGCAGTAAGACGACAAATTGATGACCTACCGTGCCAATCAGAAATCGTCCAGTATGAACACCGGCTCTCAGAACTGTATGCTCAAATCCAGGGAAAACATCGACAGACTCGCAAATACTATTCTACCTACAATGCTCTTTTGGAAATAAAAGAATTGATGTTAAAGGAAACATCTTTATTGAATTCGATCATTTCACAGTTTCAAGAGGCCTTTAGTAGCACTGATGGTCGTATAAAGCTTGTTCATTCCATGGAAGGAATTGTCAAGGGAAGTGAACAGAAACTACGAAAGGTTCAACTAGGGCTTCAAGAAGAAGAGACAAATCTTAATGATCTTAAGGATAGATATGCCGCAGCAGTCGGAAAAATGCTCCAAGGAGAAGTTACGGTGTCAAAGTTCCAAATGAAAATTGCTGACGTCTCTGAGGTTGTGTTGCATGAAATATTTGCATCAGTCAAAGCGGATCGATGA

Protein sequence

>Msa0432770

MSGNLDELVCEIDCRKMNVVEQLDELRERINKEGVDSSVHKLYNSIKSLKDLERKENQFLFKRDSKHSELQSEINELERKIANDCGDDSKSLHHSLSESLGRVDLMKKELAARLRDVVAVRRQIDDLPCQSEIVQYEHRLSELYAQIQGKHRQTRKYYSTYNALLEIKELMLKETSLLNSIISQFQEAFSSTDGRIKLVHSMEGIVKGSEQKLRKVQLGLQEEETNLNDLKDRYAAAVGKMLQGEVTVSKFQMKIADVSEVVLHEIFASVKADR*