AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1371430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1371430 MtrunA17_Chr3g0138361 85.385 260 30 2 1 256 1 256 3.57e-153 427
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1371430 AT4G32560.4 46.667 240 126 1 15 252 22 261 3.28e-62 197
Msa1371430 AT4G32560.3 46.667 240 126 1 15 252 45 284 6.27e-62 197
Msa1371430 AT4G32560.1 46.667 240 126 1 15 252 47 286 6.86e-62 197
Msa1371430 AT4G32560.2 46.667 240 126 1 15 252 47 286 6.86e-62 197

Find 63 sgRNAs with CRISPR-Local

Find 468 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTACCTACAATGCTCTTT+TGG 0.238498 tig0019197:+181592 Msa1371430:CDS
AAGAGTTGATTTGATGAAAA+AGG 0.251538 tig0019197:+180559 Msa1371430:CDS
AACTTCGATGAGTGGCAATT+TGG 0.253638 tig0019197:+180170 Msa1371430:exon
ATTTGCTGACTATTATTTAC+AGG 0.255046 tig0019197:+186736 Msa1371430:three_prime_UTR
TTGGAATAATCTCCATTTAC+AGG 0.293628 tig0019197:-186818 None:intergenic
TTCCAATCGGCCAAAGGATT+GGG 0.306996 tig0019197:+186835 Msa1371430:three_prime_UTR
AATAAAAGAATTGATGTTAA+AGG 0.310913 tig0019197:+181616 Msa1371430:CDS
AGTATGAATTTATAATAATA+AGG 0.333722 tig0019197:-186906 None:intergenic
TATTTCCAAAAGAGCATTGT+AGG 0.361022 tig0019197:-181597 None:intergenic
AGCTCACAATACCATGGTTA+TGG 0.369500 tig0019197:+186613 Msa1371430:three_prime_UTR
GACAAATCTTAATGATCTTA+AGG 0.372253 tig0019197:+185298 Msa1371430:CDS
ATTAAGAGAGAGAATCAATA+AGG 0.380556 tig0019197:+180251 Msa1371430:CDS
CTTACTGGACGATTTCTGAT+TGG 0.404896 tig0019197:-180749 None:intergenic
ATTGGAGTGCCCCAATCCTT+TGG 0.408856 tig0019197:-186845 None:intergenic
ATTCCAATCGGCCAAAGGAT+TGG 0.422827 tig0019197:+186834 Msa1371430:three_prime_UTR
GCTCCACAACATTCATCTTC+CGG 0.435244 tig0019197:-180218 None:intergenic
AATTTATAATAATAAGGATA+AGG 0.437533 tig0019197:-186900 None:intergenic
GCCCCAATCCTTTGGCCGAT+TGG 0.442457 tig0019197:-186837 None:intergenic
TCCCTTGACAATTCCTTCCA+TGG 0.449854 tig0019197:-183233 None:intergenic
GCTCACAATACCATGGTTAT+GGG 0.451293 tig0019197:+186614 Msa1371430:three_prime_UTR
AATTGTCAAGGGAAGTGAAC+AGG 0.458713 tig0019197:+183243 Msa1371430:CDS
AGGAACTTGCTGCTAGACTA+AGG 0.460208 tig0019197:+180685 Msa1371430:intron
TATAAAGCTTGTTCATTCCA+TGG 0.467664 tig0019197:+183216 Msa1371430:CDS
GAGTGGCAATTTGGATGAAC+TGG 0.470793 tig0019197:+180179 Msa1371430:CDS
TTGACACCGTAACTTCTCCT+TGG 0.470807 tig0019197:-186505 None:intergenic
CAATTCAATCAAGTCTTTGA+AGG 0.479320 tig0019197:+180305 Msa1371430:CDS
ATTGAATTCGATCATTTCAC+AGG 0.492974 tig0019197:+181649 Msa1371430:CDS
TGGTTTGTGAGATTGATTGC+CGG 0.503885 tig0019197:+180199 Msa1371430:CDS
AGAGAGAGAATCAATAAGGA+AGG 0.516554 tig0019197:+180255 Msa1371430:CDS
CAGTCAAAGCGGATCGATGA+TGG 0.517423 tig0019197:+186585 Msa1371430:CDS
TACCTTATTGCAGTTTCAAG+AGG 0.525372 tig0019197:+183171 Msa1371430:intron
AGTTCAGGATCTTGAAAGGA+AGG 0.526031 tig0019197:+180400 Msa1371430:intron
CATTCTCTTAGCGAATCACT+TGG 0.532694 tig0019197:+180536 Msa1371430:CDS
AAGCTTGTTCATTCCATGGA+AGG 0.540003 tig0019197:+183220 Msa1371430:CDS
AAACTACGAAAGGTTCAACT+AGG 0.544419 tig0019197:+185260 Msa1371430:CDS
CGATTTCTGATTGGCACGGT+AGG 0.549963 tig0019197:-180740 None:intergenic
TAAATGGAGATTATTCCAAT+CGG 0.553466 tig0019197:+186822 Msa1371430:three_prime_UTR
TTCCATGGAAGGAATTGTCA+AGG 0.564214 tig0019197:+183231 Msa1371430:CDS
TCCAATCGGCCAAAGGATTG+GGG 0.567106 tig0019197:+186836 Msa1371430:three_prime_UTR
TCTTAGTTCAGGATCTTGAA+AGG 0.575221 tig0019197:+180396 Msa1371430:intron
AGAACTGTATGCTCAAATCC+AGG 0.575284 tig0019197:+181385 Msa1371430:CDS
ACGACCATCAGTGCTACTAA+AGG 0.575612 tig0019197:-183194 None:intergenic
GAGCATACAGTTCTGAGAGC+CGG 0.578341 tig0019197:-181376 None:intergenic
AATGCTCCAAGGAGAAGTTA+CGG 0.584884 tig0019197:+186499 Msa1371430:CDS
GAGGCCTTTAGTAGCACTGA+TGG 0.586647 tig0019197:+183190 Msa1371430:CDS
GATAGATATGCCGCAGCAGT+CGG 0.593565 tig0019197:+185320 Msa1371430:CDS
AGATTATTCCAATCGGCCAA+AGG 0.597029 tig0019197:+186829 Msa1371430:three_prime_UTR
CTTAACACAACTTCGATGAG+TGG 0.606083 tig0019197:+180162 Msa1371430:exon
CTGAGATTAATGAATTAGAG+AGG 0.628262 tig0019197:+180471 Msa1371430:CDS
AACTACGAAAGGTTCAACTA+GGG 0.640484 tig0019197:+185261 Msa1371430:CDS
TCCATGGAAGGAATTGTCAA+GGG 0.644066 tig0019197:+183232 Msa1371430:CDS
TTGCCGGAAGATGAATGTTG+TGG 0.644134 tig0019197:+180215 Msa1371430:CDS
GGAACTTGCTGCTAGACTAA+GGG 0.645439 tig0019197:+180686 Msa1371430:intron
TTATAAACTGATGCGAGCTG+CGG 0.645761 tig0019197:+186692 Msa1371430:three_prime_UTR
CTTATGCTCACCGACTGCTG+CGG 0.652781 tig0019197:-185330 None:intergenic
GAAAATTGCTGACGTCTCTG+AGG 0.657782 tig0019197:+186538 Msa1371430:CDS
TGGACGATTTCTGATTGGCA+CGG 0.669366 tig0019197:-180744 None:intergenic
GCTTGTGCAGGTATGAACAC+CGG 0.672424 tig0019197:+181357 Msa1371430:intron
AATATTTGCATCAGTCAAAG+CGG 0.676651 tig0019197:+186574 Msa1371430:CDS
ATCTTGTTAACCCATAACCA+TGG 0.686727 tig0019197:-186624 None:intergenic
ATATGTACAGAAACTACGAA+AGG 0.693870 tig0019197:+185250 Msa1371430:intron
GTCACAAGCTCACAATACCA+TGG 0.697448 tig0019197:+186607 Msa1371430:three_prime_UTR
AGGAAAATAGCAAATGACTG+TGG 0.704917 tig0019197:+180491 Msa1371430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATAACTATTTATGTT+GGG - tig0019197:186099-186118 None:intergenic 10.0%
!! TATTATATAACTATTTATGT+TGG - tig0019197:186100-186119 None:intergenic 10.0%
!! AACATAAATAGTTATATAAT+AGG + tig0019197:186099-186118 Msa1371430:intron 10.0%
!!! AATTAAATAAAAGTTTTGTA+TGG + tig0019197:186770-186789 Msa1371430:three_prime_UTR 10.0%
!! GAAAATAGTAAAAAATAAAT+TGG - tig0019197:186866-186885 None:intergenic 10.0%
!!! TATTTTTTACTATTTTCAAA+TGG + tig0019197:186869-186888 Msa1371430:three_prime_UTR 10.0%
!! AATTTATAATAATAAGGATA+AGG - tig0019197:186903-186922 None:intergenic 10.0%
!! AGTATGAATTTATAATAATA+AGG - tig0019197:186909-186928 None:intergenic 10.0%
!! TACTTTCATATAATAATCAA+TGG + tig0019197:180135-180154 Msa1371430:intron 15.0%
!!! ATAAAAGTAATTGATAATAC+GGG - tig0019197:180842-180861 None:intergenic 15.0%
!!! GATAAAAGTAATTGATAATA+CGG - tig0019197:180843-180862 None:intergenic 15.0%
!!! TGGAATATATTGTTATTTAT+TGG + tig0019197:181319-181338 Msa1371430:intron 15.0%
!! AATAAAAGAATTGATGTTAA+AGG + tig0019197:181616-181635 Msa1371430:CDS 15.0%
!!! AAAGATTGCATTTTTTAAAA+GGG - tig0019197:181922-181941 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTTTGTGG+TGG - tig0019197:182367-182386 None:intergenic 15.0%
!!! TTTTATTGCATCTTTTAATT+TGG + tig0019197:182981-183000 Msa1371430:intron 15.0%
!! TACATAATTTATAGATATCA+AGG - tig0019197:183904-183923 None:intergenic 15.0%
!! AATGATCAATAAAATAAAAG+AGG - tig0019197:184820-184839 None:intergenic 15.0%
!! TATACAATTTATAGATATCA+AGG - tig0019197:185810-185829 None:intergenic 15.0%
!!! AATTTTTTAGTTAAATACTC+TGG + tig0019197:185891-185910 Msa1371430:intron 15.0%
!! AGTTAAATTAGAAAACTTAT+AGG - tig0019197:186004-186023 None:intergenic 15.0%
!!! TAATTATTTTAGAATGTCCT+TGG + tig0019197:181523-181542 Msa1371430:intron 20.0%
!! AAAATAAATAGAATGGCAAA+AGG - tig0019197:181828-181847 None:intergenic 20.0%
!!! CAAAGATTGCATTTTTTAAA+AGG - tig0019197:181923-181942 None:intergenic 20.0%
!! TACACCTTAATCTATATTAA+TGG - tig0019197:182771-182790 None:intergenic 20.0%
!!! AAGAATTTGAGATCTAATAA+AGG + tig0019197:182807-182826 Msa1371430:intron 20.0%
!!! TTTAAGTTCAAGAAACATTA+TGG - tig0019197:183033-183052 None:intergenic 20.0%
!! AAATAAGATGATGAAATGTT+AGG - tig0019197:183089-183108 None:intergenic 20.0%
!! GTCAATATAATTAAATGCAA+GGG - tig0019197:183560-183579 None:intergenic 20.0%
!!! TTTTGCTTGAATCTTATAAT+TGG - tig0019197:183631-183650 None:intergenic 20.0%
!! ATTATAAGATTCAAGCAAAA+TGG + tig0019197:183631-183650 Msa1371430:intron 20.0%
!! TTATAAGATTCAAGCAAAAT+GGG + tig0019197:183632-183651 Msa1371430:intron 20.0%
!! ACAACTATTAATCATGAAAT+GGG - tig0019197:183859-183878 None:intergenic 20.0%
!! TCATTTAGAAAGATTTGATT+CGG + tig0019197:183958-183977 Msa1371430:intron 20.0%
!! ATTACAAGATTAAAGCTAAA+TGG + tig0019197:184247-184266 Msa1371430:intron 20.0%
!! TTACAAGATTAAAGCTAAAT+GGG + tig0019197:184248-184267 Msa1371430:intron 20.0%
!!! ATATTTTTACTGTACAATGT+TGG + tig0019197:184329-184348 Msa1371430:intron 20.0%
!!! TATTTTTACTGTACAATGTT+GGG + tig0019197:184330-184349 Msa1371430:intron 20.0%
!!! AAATATGTGAAAGGATTTTA+TGG + tig0019197:184678-184697 Msa1371430:intron 20.0%
!! TTATCCAAATAATAATCAGA+AGG - tig0019197:185035-185054 None:intergenic 20.0%
!! AAAACTCAAATGGTAATATA+AGG - tig0019197:185150-185169 None:intergenic 20.0%
!! GAAAAATAACAAAACTCAAA+TGG - tig0019197:185160-185179 None:intergenic 20.0%
!!! GTAGAATAGTTTTAGTTTTT+TGG + tig0019197:185423-185442 Msa1371430:intron 20.0%
!! GATTAAACCTAATGAAAATT+TGG - tig0019197:185451-185470 None:intergenic 20.0%
!! ACATTTATTAACCATGAAAT+GGG - tig0019197:185501-185520 None:intergenic 20.0%
!!! TACATATTTTGTAGATATCA+AGG - tig0019197:185546-185565 None:intergenic 20.0%
!! TAAACACTTAAGAAACTATT+TGG + tig0019197:185953-185972 Msa1371430:intron 20.0%
!! AAACACTTAAGAAACTATTT+GGG + tig0019197:185954-185973 Msa1371430:intron 20.0%
!! TAACTTATGAAAACAACTTA+TGG + tig0019197:186019-186038 Msa1371430:intron 20.0%
!! GAATGACATAGTTATATAAT+AGG + tig0019197:186226-186245 Msa1371430:intron 20.0%
!! AGCTATTTGATAAGTAAAAA+CGG - tig0019197:186460-186479 None:intergenic 20.0%
!! TATCAAATAGCTTTCTTTAA+TGG + tig0019197:186468-186487 Msa1371430:intron 20.0%
! ATTAAGAGAGAGAATCAATA+AGG + tig0019197:180251-180270 Msa1371430:CDS 25.0%
!!! TTGAATATAATGTGTTGCTT+AGG + tig0019197:180365-180384 Msa1371430:intron 25.0%
!!! AAGAGTTGATTTGATGAAAA+AGG + tig0019197:180559-180578 Msa1371430:CDS 25.0%
! AAAAAGGTAACAATTAGCAT+TGG + tig0019197:180575-180594 Msa1371430:intron 25.0%
! AAAAGGTAACAATTAGCATT+GGG + tig0019197:180576-180595 Msa1371430:intron 25.0%
! GTTTGTAGTAATTGAAACAA+TGG - tig0019197:180644-180663 None:intergenic 25.0%
! GTATAAAGAAACAAACTTAC+TGG - tig0019197:180767-180786 None:intergenic 25.0%
! TCATTCAAGAAAGAGTTATA+CGG - tig0019197:180791-180810 None:intergenic 25.0%
! AAATATTCTAGACACTTGTA+GGG - tig0019197:180869-180888 None:intergenic 25.0%
! AGATCTAAAGATTAATGAGT+TGG + tig0019197:181132-181151 Msa1371430:intron 25.0%
! TGGTATATGATAGAACATTA+TGG + tig0019197:181164-181183 Msa1371430:intron 25.0%
! ATCAAAAGAATTTATGAACC+TGG - tig0019197:181406-181425 None:intergenic 25.0%
!! AAAAGTGAAAAAGTTTTGCT+AGG + tig0019197:181448-181467 Msa1371430:intron 25.0%
!! AAAGTGAAAAAGTTTTGCTA+GGG + tig0019197:181449-181468 Msa1371430:intron 25.0%
! TGTATCATAGCAAAATCATA+AGG - tig0019197:181723-181742 None:intergenic 25.0%
! CAGAAGGAAAATAAATAGAA+TGG - tig0019197:181835-181854 None:intergenic 25.0%
! AGTTTATGGTAAATGTAAGA+AGG - tig0019197:181964-181983 None:intergenic 25.0%
!! TTTCAGGATAGTTTAGTTTA+TGG - tig0019197:181978-181997 None:intergenic 25.0%
! ATCCTGAAAAATTGAACTAT+TGG + tig0019197:181989-182008 Msa1371430:intron 25.0%
!! ATCCAATAGTTCAATTTTTC+AGG - tig0019197:181994-182013 None:intergenic 25.0%
! AAAATTGAACTATTGGATGA+AGG + tig0019197:181996-182015 Msa1371430:intron 25.0%
! AATATAAAACCCTTCTCATT+TGG + tig0019197:182170-182189 Msa1371430:intron 25.0%
! ATATAAAACCCTTCTCATTT+GGG + tig0019197:182171-182190 Msa1371430:intron 25.0%
! GAACTAAAAAATTGTATTGG+AGG + tig0019197:182195-182214 Msa1371430:intron 25.0%
! TAAAAAATTGTATTGGAGGA+GGG + tig0019197:182199-182218 Msa1371430:intron 25.0%
! AATAATTAAACTTCAGCACA+TGG - tig0019197:182664-182683 None:intergenic 25.0%
!! ATTATTTAGAACAATGACAG+TGG + tig0019197:182678-182697 Msa1371430:intron 25.0%
! AAGGCCATTAATATAGATTA+AGG + tig0019197:182764-182783 Msa1371430:intron 25.0%
!!! ATCTCAAAAATTTGAGTTGT+TGG + tig0019197:182940-182959 Msa1371430:intron 25.0%
!!! TCTCAAAAATTTGAGTTGTT+GGG + tig0019197:182941-182960 Msa1371430:intron 25.0%
!! TTGAACTTAAAAAAGCATAG+TGG + tig0019197:183042-183061 Msa1371430:intron 25.0%
!! AATGTTAGGTCAAACAATTT+TGG - tig0019197:183075-183094 None:intergenic 25.0%
!! TTTTTGCATGCGTAAATATT+TGG + tig0019197:183274-183293 Msa1371430:intron 25.0%
! ACTTTGGACTAAAATTTGAT+TGG + tig0019197:183336-183355 Msa1371430:intron 25.0%
! TGAAAAATCAAATGTGTGAA+TGG - tig0019197:183378-183397 None:intergenic 25.0%
!! TAATGTCTTATTGTCAATAC+TGG - tig0019197:183522-183541 None:intergenic 25.0%
! GGTCAATATAATTAAATGCA+AGG - tig0019197:183561-183580 None:intergenic 25.0%
! ATATATGTACAGAAACTAGA+AGG + tig0019197:183753-183772 Msa1371430:intron 25.0%
! GATTAAACCTATGAAAAAGT+TGG - tig0019197:183817-183836 None:intergenic 25.0%
! TTTCATAGGTTTAATCTTCA+TGG + tig0019197:183821-183840 Msa1371430:intron 25.0%
! TTCATAGGTTTAATCTTCAT+GGG + tig0019197:183822-183841 Msa1371430:intron 25.0%
! AACTATTAATCATGAAATGG+GGG - tig0019197:183857-183876 None:intergenic 25.0%
! CAACTATTAATCATGAAATG+GGG - tig0019197:183858-183877 None:intergenic 25.0%
! CACAACTATTAATCATGAAA+TGG - tig0019197:183860-183879 None:intergenic 25.0%
! CATTTAGAAAGATTTGATTC+GGG + tig0019197:183959-183978 Msa1371430:intron 25.0%
!! TAATGTCTTATTGTCAATAC+TGG - tig0019197:183522-183541 None:intergenic 25.0%
!!! AGTATTGACAATAAGACATT+AGG + tig0019197:183521-183540 Msa1371430:intron 25.0%
! TGTAAAAACATTAGTATGGA+TGG + tig0019197:184557-184576 Msa1371430:intron 25.0%
!!! GATTTGGATAAAGTCTTATT+TGG - tig0019197:184624-184643 None:intergenic 25.0%
!! TCACATATTTAGTTCAAAGA+TGG - tig0019197:184668-184687 None:intergenic 25.0%
! CTTTGAACTAAATATGTGAA+AGG + tig0019197:184669-184688 Msa1371430:intron 25.0%
! TGAAGATAATAGAGCAAAAA+GGG - tig0019197:184884-184903 None:intergenic 25.0%
! ATGAAGATAATAGAGCAAAA+AGG - tig0019197:184885-184904 None:intergenic 25.0%
! TTCTCCTTCTGATTATTATT+TGG + tig0019197:185028-185047 Msa1371430:intron 25.0%
!!! ATGGTAATATAAGGTTTTGT+TGG - tig0019197:185141-185160 None:intergenic 25.0%
! TTTCAATGAATGTGCTTTAT+GGG + tig0019197:185204-185223 Msa1371430:intron 25.0%
! GACAAATCTTAATGATCTTA+AGG + tig0019197:185298-185317 Msa1371430:CDS 25.0%
! TTCATTAGGTTTAATCTTCA+TGG + tig0019197:185455-185474 Msa1371430:intron 25.0%
! CACATTTATTAACCATGAAA+TGG - tig0019197:185502-185521 None:intergenic 25.0%
! TAAACTCATTTAGAAAGACA+AGG + tig0019197:185593-185612 Msa1371430:intron 25.0%
! ATACACAACTATCAATTATG+AGG - tig0019197:185768-185787 None:intergenic 25.0%
!! ATTTGCTGACTATTATTTAC+AGG + tig0019197:186736-186755 Msa1371430:three_prime_UTR 25.0%
!!! AAAGTTTTGTATGGTTGATT+TGG + tig0019197:186779-186798 Msa1371430:three_prime_UTR 25.0%
!!! AAGTTTTGTATGGTTGATTT+GGG + tig0019197:186780-186799 Msa1371430:three_prime_UTR 25.0%
! TAAATGGAGATTATTCCAAT+CGG + tig0019197:186822-186841 Msa1371430:three_prime_UTR 25.0%
CAATTCAATCAAGTCTTTGA+AGG + tig0019197:180305-180324 Msa1371430:CDS 30.0%
CTGAGATTAATGAATTAGAG+AGG + tig0019197:180471-180490 Msa1371430:CDS 30.0%
TTGAAACAATGGAATAAGCA+AGG - tig0019197:180633-180652 None:intergenic 30.0%
CAAATATTCTAGACACTTGT+AGG - tig0019197:180870-180889 None:intergenic 30.0%
TGGTAAGACTATATGAGATA+AGG + tig0019197:180912-180931 Msa1371430:intron 30.0%
!! AGACATTGACTTCTTTAGTA+AGG + tig0019197:181030-181049 Msa1371430:intron 30.0%
! TAATGAGTTGGATCGAAATA+TGG + tig0019197:181144-181163 Msa1371430:intron 30.0%
GTTGGTTGTAATTAAAGAGA+TGG + tig0019197:181230-181249 Msa1371430:intron 30.0%
GTAATTAAAGAGATGGTACA+TGG + tig0019197:181237-181256 Msa1371430:intron 30.0%
ACAATATATTCCAGACAACT+AGG - tig0019197:181312-181331 None:intergenic 30.0%
! TTTTTCATTTATGCTTGTGC+AGG + tig0019197:181345-181364 Msa1371430:intron 30.0%
! AAGTGAAAAAGTTTTGCTAG+GGG + tig0019197:181450-181469 Msa1371430:intron 30.0%
ATCTATTCAACTACTCTTTC+TGG + tig0019197:181497-181516 Msa1371430:intron 30.0%
!! TATTTCCAAAAGAGCATTGT+AGG - tig0019197:181600-181619 None:intergenic 30.0%
ATTGAATTCGATCATTTCAC+AGG + tig0019197:181649-181668 Msa1371430:CDS 30.0%
ATCATTTCACAGGTATTCAT+CGG + tig0019197:181659-181678 Msa1371430:intron 30.0%
!!! GTGGTTTTATTACATCTCTT+AGG + tig0019197:182026-182045 Msa1371430:intron 30.0%
AAAGGCTTGGAAAAAAAGAA+AGG + tig0019197:182086-182105 Msa1371430:intron 30.0%
GAAAAAAAGAAAGGAGTAAG+TGG + tig0019197:182095-182114 Msa1371430:intron 30.0%
TATAAAACCCTTCTCATTTG+GGG + tig0019197:182172-182191 Msa1371430:intron 30.0%
GGGGAACTAAAAAATTGTAT+TGG + tig0019197:182192-182211 Msa1371430:intron 30.0%
CTAAAAAATTGTATTGGAGG+AGG + tig0019197:182198-182217 Msa1371430:intron 30.0%
GACAATGCATAAAATATGCA+AGG + tig0019197:182322-182341 Msa1371430:intron 30.0%
! TATTTTGCAGTAACTTAGCA+TGG + tig0019197:182615-182634 Msa1371430:intron 30.0%
!! ATTTCTTTTGAGAAATGGAG+AGG - tig0019197:182743-182762 None:intergenic 30.0%
!! CCTTCATTTCTTTTGAGAAA+TGG - tig0019197:182748-182767 None:intergenic 30.0%
CCATTTCTCAAAAGAAATGA+AGG + tig0019197:182745-182764 Msa1371430:intron 30.0%
TACACCCAAAACTATAGTAA+TGG + tig0019197:182835-182854 Msa1371430:intron 30.0%
! GGTTCCATTACTATAGTTTT+GGG - tig0019197:182842-182861 None:intergenic 30.0%
TACTTCTCAAAAGATATGGA+GGG - tig0019197:182863-182882 None:intergenic 30.0%
TCTCTACTTCTCAAAAGATA+TGG - tig0019197:182867-182886 None:intergenic 30.0%
!! ATATCTTTTGAGAAGTAGAG+AGG + tig0019197:182866-182885 Msa1371430:intron 30.0%
! GCTAAAACTTGTTCAGAAAA+AGG - tig0019197:183132-183151 None:intergenic 30.0%
! TATAAAGCTTGTTCATTCCA+TGG + tig0019197:183216-183235 Msa1371430:CDS 30.0%
TTGTCAATACTGGAATTTCA+TGG - tig0019197:183512-183531 None:intergenic 30.0%
TAATTAAATGCAAGGGTCAA+GGG - tig0019197:183553-183572 None:intergenic 30.0%
ATAATTAAATGCAAGGGTCA+AGG - tig0019197:183554-183573 None:intergenic 30.0%
!!! GCATTAGATTTTTTGCTCTT+TGG + tig0019197:183789-183808 Msa1371430:intron 30.0%
TCATAGGTTTAATCTTCATG+GGG + tig0019197:183823-183842 Msa1371430:intron 30.0%
GATGAAGATGACAAACAAAA+GGG - tig0019197:183433-183452 None:intergenic 30.0%
TTATCAGTCTATGATGAACT+TGG - tig0019197:184207-184226 None:intergenic 30.0%
AAGTTCATCATAGACTGATA+AGG + tig0019197:184206-184225 Msa1371430:intron 30.0%
!!! GATTTTTAAGAAGTACCACT+AGG + tig0019197:184298-184317 Msa1371430:intron 30.0%
GGCTTGTAAAAACATTAGTA+TGG + tig0019197:184553-184572 Msa1371430:intron 30.0%
CCACTTATGTCTTAATGATT+TGG - tig0019197:184640-184659 None:intergenic 30.0%
CCAAATCATTAAGACATAAG+TGG + tig0019197:184637-184656 Msa1371430:intron 30.0%
AGACAGATGACATATGAAAT+GGG - tig0019197:184788-184807 None:intergenic 30.0%
AATAGAGCAAAAAGGGTTTA+AGG - tig0019197:184877-184896 None:intergenic 30.0%
GCATTTAAGAATCCTAATCA+GGG + tig0019197:184967-184986 Msa1371430:intron 30.0%
CTTTCAATGAATGTGCTTTA+TGG + tig0019197:185203-185222 Msa1371430:intron 30.0%
TCGTAGTTTCTGTACATATA+TGG - tig0019197:185249-185268 None:intergenic 30.0%
ATATGTACAGAAACTACGAA+AGG + tig0019197:185250-185269 Msa1371430:intron 30.0%
!!! TTTGGTGCCAAATTTTCATT+AGG + tig0019197:185441-185460 Msa1371430:intron 30.0%
GTTTAATCTTCATGGATTCA+TGG + tig0019197:185463-185482 Msa1371430:intron 30.0%
TTTATTAACCATGAAATGGG+AGG - tig0019197:185498-185517 None:intergenic 30.0%
TATTAGATAAACGGAGATCA+TGG - tig0019197:185678-185697 None:intergenic 30.0%
TGATCTCCGTTTATCTAATA+AGG + tig0019197:185678-185697 Msa1371430:intron 30.0%
GTGACACCTTATTAGATAAA+CGG - tig0019197:185687-185706 None:intergenic 30.0%
AACTATCAATTATGAGGTGA+GGG - tig0019197:185762-185781 None:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+AGG - tig0019197:185918-185937 None:intergenic 30.0%
AATATTTGCATCAGTCAAAG+CGG + tig0019197:186574-186593 Msa1371430:CDS 30.0%
!!! AGTTTTGTATGGTTGATTTG+GGG + tig0019197:186781-186800 Msa1371430:three_prime_UTR 30.0%
! TTACACAGTTTTCCTGTAAA+TGG + tig0019197:186806-186825 Msa1371430:three_prime_UTR 30.0%
TTGGAATAATCTCCATTTAC+AGG - tig0019197:186821-186840 None:intergenic 30.0%
AGAGAGAGAATCAATAAGGA+AGG + tig0019197:180255-180274 Msa1371430:CDS 35.0%
TCTTAGTTCAGGATCTTGAA+AGG + tig0019197:180396-180415 Msa1371430:intron 35.0%
AGGAAAATAGCAAATGACTG+TGG + tig0019197:180491-180510 Msa1371430:CDS 35.0%
AAGGATCATGAACTACTCAA+AGG - tig0019197:180614-180633 None:intergenic 35.0%
!!! AGTTTTTTCCCCTTTCTGTT+AGG + tig0019197:180665-180684 Msa1371430:intron 35.0%
TATTTGTATTCACGTTGCGT+TGG + tig0019197:180884-180903 Msa1371430:intron 35.0%
ACAACATTAGAGAGAGAGTT+GGG + tig0019197:180944-180963 Msa1371430:intron 35.0%
AGTCCCTATAGTAGAAAAGA+TGG + tig0019197:180969-180988 Msa1371430:intron 35.0%
! CCACCATCTTTTCTACTATA+GGG - tig0019197:180975-180994 None:intergenic 35.0%
! TCCACCATCTTTTCTACTAT+AGG - tig0019197:180976-180995 None:intergenic 35.0%
!! TAGAAAAGATGGTGGAAACT+AGG + tig0019197:180980-180999 Msa1371430:intron 35.0%
AGTCAAATTACTAGAGGTAG+AGG + tig0019197:181074-181093 Msa1371430:intron 35.0%
AAAGAGATGGTACATGGATA+AGG + tig0019197:181243-181262 Msa1371430:intron 35.0%
AAAGCAATGACATGCATAAC+AGG + tig0019197:181268-181287 Msa1371430:intron 35.0%
TAACAGGTTTGATGAGAATG+TGG + tig0019197:181284-181303 Msa1371430:intron 35.0%
! AGTGAAAAAGTTTTGCTAGG+GGG + tig0019197:181451-181470 Msa1371430:intron 35.0%
! TTCTACCTACAATGCTCTTT+TGG + tig0019197:181592-181611 Msa1371430:CDS 35.0%
GAGGGATACATTTGATATGA+GGG - tig0019197:181750-181769 None:intergenic 35.0%
AGAGGGATACATTTGATATG+AGG - tig0019197:181751-181770 None:intergenic 35.0%
CATATCAAATGTATCCCTCT+CGG + tig0019197:181751-181770 Msa1371430:intron 35.0%
ATAGAGCAAATAGAGAAGAG+AGG - tig0019197:181779-181798 None:intergenic 35.0%
TCTATTTGCTCTATCTGTTC+AGG + tig0019197:181785-181804 Msa1371430:intron 35.0%
CTATTTGCTCTATCTGTTCA+GGG + tig0019197:181786-181805 Msa1371430:intron 35.0%
TACTAAGAACAAGATGTGCT+AGG - tig0019197:181872-181891 None:intergenic 35.0%
AAGAAATAGAGGACATTGGA+AGG + tig0019197:182118-182137 Msa1371430:intron 35.0%
ATAAAACCCTTCTCATTTGG+GGG + tig0019197:182173-182192 Msa1371430:intron 35.0%
TGCATAAAATATGCAAGGTC+CGG + tig0019197:182327-182346 Msa1371430:intron 35.0%
!!! TTTTTTTTTTGTGGTGGCCA+GGG - tig0019197:182361-182380 None:intergenic 35.0%
!!! TTTTTTTTTTTGTGGTGGCC+AGG - tig0019197:182362-182381 None:intergenic 35.0%
!! GAAACCTTAAGGCTTTGTTT+GGG - tig0019197:182552-182571 None:intergenic 35.0%
!!! AGTATTTTGGGTTTGAAGCA+TGG + tig0019197:182591-182610 Msa1371430:intron 35.0%
! GGGTTCCATTACTATAGTTT+TGG - tig0019197:182843-182862 None:intergenic 35.0%
CTACTTCTCAAAAGATATGG+AGG - tig0019197:182864-182883 None:intergenic 35.0%
AAGGTAGGGAAAAACATTGA+AGG - tig0019197:183157-183176 None:intergenic 35.0%
CTTGAAACTGCAATAAGGTA+GGG - tig0019197:183171-183190 None:intergenic 35.0%
TCTTGAAACTGCAATAAGGT+AGG - tig0019197:183172-183191 None:intergenic 35.0%
TACCTTATTGCAGTTTCAAG+AGG + tig0019197:183171-183190 Msa1371430:intron 35.0%
!! GTGTTGTGTTGATTTGACTT+TGG + tig0019197:183320-183339 Msa1371430:intron 35.0%
TTAACAAAAAGAGAAGCAGG+AGG - tig0019197:183410-183429 None:intergenic 35.0%
GAGTTAACAAAAAGAGAAGC+AGG - tig0019197:183413-183432 None:intergenic 35.0%
GACCATCATACAGAATGATA+AGG + tig0019197:183590-183609 Msa1371430:intron 35.0%
CTCCTTATCATTCTGTATGA+TGG - tig0019197:183595-183614 None:intergenic 35.0%
CAGAATGATAAGGAGTTAGA+AGG + tig0019197:183600-183619 Msa1371430:intron 35.0%
AATGATAAGGAGTTAGAAGG+TGG + tig0019197:183603-183622 Msa1371430:intron 35.0%
!! GTGATTGAAAAGTACCACTA+AGG + tig0019197:183686-183705 Msa1371430:intron 35.0%
AAAAAATCCTGAAGCCTTAG+TGG - tig0019197:183703-183722 None:intergenic 35.0%
GCAGTAAGACATGTAATGTA+CGG - tig0019197:183730-183749 None:intergenic 35.0%
CAAAAAATCTAATGCCACCA+AGG - tig0019197:183784-183803 None:intergenic 35.0%
!!! TTTGGTGCCAACTTTTTCAT+AGG + tig0019197:183807-183826 Msa1371430:intron 35.0%
AATCATGAAATGGGGGAAAA+AGG - tig0019197:183850-183869 None:intergenic 35.0%
GTGTATCTTCTTTCTGTATG+AGG + tig0019197:183877-183896 Msa1371430:intron 35.0%
GAAAAAATCACGTGTGTGAA+TGG - tig0019197:183999-184018 None:intergenic 35.0%
TGACAAACAAAAGGGACAAA+AGG - tig0019197:184037-184056 None:intergenic 35.0%
TAGACTGATAAGGAGTTAGA+AGG + tig0019197:184216-184235 Msa1371430:intron 35.0%
AAAATATTCCTGAAGCCTAG+TGG - tig0019197:184316-184335 None:intergenic 35.0%
! TGAGAAAGTCTCGTTTTATG+TGG + tig0019197:184481-184500 Msa1371430:intron 35.0%
! AAGTCTCGTTTTATGTGGTT+TGG + tig0019197:184486-184505 Msa1371430:intron 35.0%
! AGTCTCGTTTTATGTGGTTT+GGG + tig0019197:184487-184506 Msa1371430:intron 35.0%
ATGTTTAGAGAAAGCCTGTA+TGG + tig0019197:184511-184530 Msa1371430:intron 35.0%
TAAACATGCACAAACCATAC+AGG - tig0019197:184528-184547 None:intergenic 35.0%
TAGTATGGATGGTTGATTAG+AGG + tig0019197:184568-184587 Msa1371430:intron 35.0%
! GATTTTATGGAGTCGATTGA+TGG + tig0019197:184691-184710 Msa1371430:intron 35.0%
CAGACAGATGACATATGAAA+TGG - tig0019197:184789-184808 None:intergenic 35.0%
TTCATATGTCATCTGTCTGT+TGG + tig0019197:184790-184809 Msa1371430:intron 35.0%
TCATATGTCATCTGTCTGTT+GGG + tig0019197:184791-184810 Msa1371430:intron 35.0%
!!! ACTGCTTCAACTTGTTTTGT+TGG + tig0019197:184945-184964 Msa1371430:intron 35.0%
GGCATTTAAGAATCCTAATC+AGG + tig0019197:184966-184985 Msa1371430:intron 35.0%
AAACTACGAAAGGTTCAACT+AGG + tig0019197:185260-185279 Msa1371430:CDS 35.0%
AACTACGAAAGGTTCAACTA+GGG + tig0019197:185261-185280 Msa1371430:CDS 35.0%
! TTCTCTGATGAAAGCTTTTC+AGG + tig0019197:185361-185380 Msa1371430:intron 35.0%
AAACTATTCTACCACCAAAG+CGG - tig0019197:185415-185434 None:intergenic 35.0%
ATATCAAACCTCTGCAAGAT+TGG - tig0019197:185724-185743 None:intergenic 35.0%
TTGCAGAGGTTTGATATTCA+TGG + tig0019197:185727-185746 Msa1371430:intron 35.0%
TGCAGAGGTTTGATATTCAT+GGG + tig0019197:185728-185747 Msa1371430:intron 35.0%
CAACTATCAATTATGAGGTG+AGG - tig0019197:185763-185782 None:intergenic 35.0%
TAAGCTCACTTAGAAAGACA+AGG + tig0019197:185863-185882 Msa1371430:intron 35.0%
TTAAATACTCTGGTCCTGTT+TGG + tig0019197:185901-185920 Msa1371430:intron 35.0%
AAACTATTTGGGAGAGCTTA+TGG + tig0019197:185965-185984 Msa1371430:intron 35.0%
! TTCCAGCTAAAGTGTCAATT+CGG - tig0019197:186368-186387 None:intergenic 35.0%
!! CTGCTTGTTGTCATTCTTAT+TGG + tig0019197:186419-186438 Msa1371430:intron 35.0%
AATAGCTTTCTTTAATGGCC+AGG + tig0019197:186473-186492 Msa1371430:intron 35.0%
! AGACGTCAGCAATTTTCATT+TGG - tig0019197:186535-186554 None:intergenic 35.0%
ATCTTGTTAACCCATAACCA+TGG - tig0019197:186627-186646 None:intergenic 35.0%
CTTAACACAACTTCGATGAG+TGG + tig0019197:180162-180181 Msa1371430:exon 40.0%
AACTTCGATGAGTGGCAATT+TGG + tig0019197:180170-180189 Msa1371430:exon 40.0%
! TGGTTTGTGAGATTGATTGC+CGG + tig0019197:180199-180218 Msa1371430:CDS 40.0%
AGGATATCCACTCTTAGTTC+AGG + tig0019197:180385-180404 Msa1371430:intron 40.0%
TCAAGATCCTGAACTAAGAG+TGG - tig0019197:180395-180414 None:intergenic 40.0%
AGTTCAGGATCTTGAAAGGA+AGG + tig0019197:180400-180419 Msa1371430:intron 40.0%
CATTCTCTTAGCGAATCACT+TGG + tig0019197:180536-180555 Msa1371430:CDS 40.0%
AGCAAGTTCCTAACAGAAAG+GGG - tig0019197:180676-180695 None:intergenic 40.0%
CAGCAAGTTCCTAACAGAAA+GGG - tig0019197:180677-180696 None:intergenic 40.0%
CTTACTGGACGATTTCTGAT+TGG - tig0019197:180752-180771 None:intergenic 40.0%
GACAACATTAGAGAGAGAGT+TGG + tig0019197:180943-180962 Msa1371430:intron 40.0%
CAACATTAGAGAGAGAGTTG+GGG + tig0019197:180945-180964 Msa1371430:intron 40.0%
CCCTATAGTAGAAAAGATGG+TGG + tig0019197:180972-180991 Msa1371430:intron 40.0%
AGTAAGGAGAGTAGATCAGA+TGG + tig0019197:181046-181065 Msa1371430:intron 40.0%
GAGGGTAGTCAAATTACTAG+AGG + tig0019197:181068-181087 Msa1371430:intron 40.0%
AGAACTGTATGCTCAAATCC+AGG + tig0019197:181385-181404 Msa1371430:CDS 40.0%
TTGGTATTTGCCACTGTACA+GGG + tig0019197:181542-181561 Msa1371430:intron 40.0%
ACAGGTATTCATCGGAGAAT+TGG + tig0019197:181667-181686 Msa1371430:intron 40.0%
GGAGAACAGATATGTACAGA+AGG - tig0019197:181851-181870 None:intergenic 40.0%
GGTAAATGTAAGAAGGCAAG+TGG - tig0019197:181957-181976 None:intergenic 40.0%
!! TTAGGCTTTGTTTGCGAGTT+TGG + tig0019197:182044-182063 Msa1371430:intron 40.0%
GGAGTAAGTGGAAGAAATAG+AGG + tig0019197:182107-182126 Msa1371430:intron 40.0%
GTGGAAGAAATAGAGGACAT+TGG + tig0019197:182114-182133 Msa1371430:intron 40.0%
AAATAGAGGACATTGGAAGG+AGG + tig0019197:182121-182140 Msa1371430:intron 40.0%
TTAGTTCCCCCAAATGAGAA+GGG - tig0019197:182182-182201 None:intergenic 40.0%
! TTTAGTTCCCCCAAATGAGA+AGG - tig0019197:182183-182202 None:intergenic 40.0%
! ATTGTATTGGAGGAGGGTTT+TGG + tig0019197:182205-182224 Msa1371430:intron 40.0%
! TTGTATTGGAGGAGGGTTTT+GGG + tig0019197:182206-182225 Msa1371430:intron 40.0%
GCATAAAATATGCAAGGTCC+GGG + tig0019197:182328-182347 Msa1371430:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG + tig0019197:182329-182348 Msa1371430:intron 40.0%
TTTGGGGGGAGAGAAATATA+GGG - tig0019197:182502-182521 None:intergenic 40.0%
!! TAAGGCTTTGTTTGGGAGTT+TGG - tig0019197:182545-182564 None:intergenic 40.0%
AACTCCCAAACAAAGCCTTA+AGG + tig0019197:182545-182564 Msa1371430:intron 40.0%
!! GGAAACCTTAAGGCTTTGTT+TGG - tig0019197:182553-182572 None:intergenic 40.0%
GATCCACACTCGATTAATCA+AGG + tig0019197:182888-182907 Msa1371430:intron 40.0%
! AAGCTTGTTCATTCCATGGA+AGG + tig0019197:183220-183239 Msa1371430:CDS 40.0%
TTCCATGGAAGGAATTGTCA+AGG + tig0019197:183231-183250 Msa1371430:CDS 40.0%
TCCATGGAAGGAATTGTCAA+GGG + tig0019197:183232-183251 Msa1371430:CDS 40.0%
AATTGTCAAGGGAAGTGAAC+AGG + tig0019197:183243-183262 Msa1371430:CDS 40.0%
ATTTCATGGCGCTATAGAAG+TGG - tig0019197:183498-183517 None:intergenic 40.0%
TCATTCTGTATGATGGTCGA+TGG - tig0019197:183588-183607 None:intergenic 40.0%
!! AAAAGTACCACTAAGGCTTC+AGG + tig0019197:183693-183712 Msa1371430:intron 40.0%
AAAATCTAATGCCACCAAGG+CGG - tig0019197:183781-183800 None:intergenic 40.0%
ATTTCACAGAGCTATAGCAG+CGG - tig0019197:184130-184149 None:intergenic 40.0%
!! GCTGAGATAAGAGTGTTATG+TGG + tig0019197:184387-184406 Msa1371430:intron 40.0%
!! AAGAGTGTTATGTGGATGAG+TGG + tig0019197:184395-184414 Msa1371430:intron 40.0%
GGTTTGTGCATGTTTAGAGA+AGG + tig0019197:184532-184551 Msa1371430:intron 40.0%
TATGGATGGTTGATTAGAGG+CGG + tig0019197:184571-184590 Msa1371430:intron 40.0%
CGGGAAAGATCAATTGTTAG+AGG + tig0019197:184591-184610 Msa1371430:intron 40.0%
TGACATATGAAATGGGTGCA+TGG - tig0019197:184781-184800 None:intergenic 40.0%
GTTACTACTACTGTTGCTGT+TGG - tig0019197:184855-184874 None:intergenic 40.0%
TAAGAATCCTAATCAGGGAC+TGG + tig0019197:184972-184991 Msa1371430:intron 40.0%
TTCTAATCCAGTCCCTGATT+AGG - tig0019197:184982-185001 None:intergenic 40.0%
TTATTATATCGTCGCCGCTT+TGG + tig0019197:185398-185417 Msa1371430:intron 40.0%
AACCATGAAATGGGAGGAAA+AGG - tig0019197:185492-185511 None:intergenic 40.0%
GCAGAGGTTTGATATTCATG+GGG + tig0019197:185729-185748 Msa1371430:intron 40.0%
CAATTATGAGGTGAGGGAAA+AGG - tig0019197:185756-185775 None:intergenic 40.0%
! TCTGGTGTTGAAGCACTATT+TGG - tig0019197:186160-186179 None:intergenic 40.0%
! TCTGGTGTTGAAGCACTATT+TGG - tig0019197:186160-186179 None:intergenic 40.0%
TTCCGAATTGACACTTTAGC+TGG + tig0019197:186363-186382 Msa1371430:intron 40.0%
AATGCTCCAAGGAGAAGTTA+CGG + tig0019197:186499-186518 Msa1371430:CDS 40.0%
AGCTCACAATACCATGGTTA+TGG + tig0019197:186613-186632 Msa1371430:three_prime_UTR 40.0%
GCTCACAATACCATGGTTAT+GGG + tig0019197:186614-186633 Msa1371430:three_prime_UTR 40.0%
TTATAAACTGATGCGAGCTG+CGG + tig0019197:186692-186711 Msa1371430:three_prime_UTR 40.0%
AGATTATTCCAATCGGCCAA+AGG + tig0019197:186829-186848 Msa1371430:three_prime_UTR 40.0%
GAGTGGCAATTTGGATGAAC+TGG + tig0019197:180179-180198 Msa1371430:CDS 45.0%
TTGCCGGAAGATGAATGTTG+TGG + tig0019197:180215-180234 Msa1371430:CDS 45.0%
GCTCCACAACATTCATCTTC+CGG - tig0019197:180221-180240 None:intergenic 45.0%
GCAGCAAGTTCCTAACAGAA+AGG - tig0019197:180678-180697 None:intergenic 45.0%
!! AGGAACTTGCTGCTAGACTA+AGG + tig0019197:180685-180704 Msa1371430:intron 45.0%
!! GGAACTTGCTGCTAGACTAA+GGG + tig0019197:180686-180705 Msa1371430:intron 45.0%
TGGACGATTTCTGATTGGCA+CGG - tig0019197:180747-180766 None:intergenic 45.0%
TTCACGTTGCGTTGGATATG+TGG + tig0019197:180892-180911 Msa1371430:intron 45.0%
!! AGATGGTGGAAACTAGGCTT+AGG + tig0019197:180986-181005 Msa1371430:intron 45.0%
AAGGAGAGTAGATCAGATGG+AGG + tig0019197:181049-181068 Msa1371430:intron 45.0%
AGGAGAGTAGATCAGATGGA+GGG + tig0019197:181050-181069 Msa1371430:intron 45.0%
AACTCTTACCCCACTATGTG+GGG - tig0019197:181213-181232 None:intergenic 45.0%
CAACTCTTACCCCACTATGT+GGG - tig0019197:181214-181233 None:intergenic 45.0%
GAATGTGGAACCTAGTTGTC+TGG + tig0019197:181299-181318 Msa1371430:intron 45.0%
CTGTACAGTGGCAAATACCA+AGG - tig0019197:181543-181562 None:intergenic 45.0%
CTTGGTATTTGCCACTGTAC+AGG + tig0019197:181541-181560 Msa1371430:intron 45.0%
! TCGATGTTTTCCCTGTACAG+TGG - tig0019197:181555-181574 None:intergenic 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG + tig0019197:182048-182067 Msa1371430:intron 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG + tig0019197:182049-182068 Msa1371430:intron 45.0%
ACATTGGAAGGAGGAGCTTT+GGG + tig0019197:182130-182149 Msa1371430:intron 45.0%
! TGTATTGGAGGAGGGTTTTG+GGG + tig0019197:182207-182226 Msa1371430:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + tig0019197:182300-182319 Msa1371430:intron 45.0%
TTGGGGGGAGAGAAATATAG+GGG - tig0019197:182501-182520 None:intergenic 45.0%
! CTTTGGGGGGAGAGAAATAT+AGG - tig0019197:182503-182522 None:intergenic 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - tig0019197:182540-182559 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - tig0019197:182541-182560 None:intergenic 45.0%
AGGGAAAGTCGGAAACCTTA+AGG - tig0019197:182563-182582 None:intergenic 45.0%
!!! TCCCTCATGCGAGAGTATTT+TGG + tig0019197:182578-182597 Msa1371430:intron 45.0%
CCCAAAATACTCTCGCATGA+GGG - tig0019197:182582-182601 None:intergenic 45.0%
!!! CCCTCATGCGAGAGTATTTT+GGG + tig0019197:182579-182598 Msa1371430:intron 45.0%
ACCCAAAATACTCTCGCATG+AGG - tig0019197:182583-182602 None:intergenic 45.0%
AGTGGCGAACATAGAATTCC+TGG + tig0019197:182696-182715 Msa1371430:intron 45.0%
AATTCCTGGCCAACTGATCA+GGG + tig0019197:182710-182729 Msa1371430:intron 45.0%
CCTCCTTGATTAATCGAGTG+TGG - tig0019197:182894-182913 None:intergenic 45.0%
CCACACTCGATTAATCAAGG+AGG + tig0019197:182891-182910 Msa1371430:intron 45.0%
AGTTGTTGGGTGAAGAGACT+TGG + tig0019197:182954-182973 Msa1371430:intron 45.0%
GTTGTTGGGTGAAGAGACTT+GGG + tig0019197:182955-182974 Msa1371430:intron 45.0%
GGCCTCTTGAAACTGCAATA+AGG - tig0019197:183176-183195 None:intergenic 45.0%
! ACGACCATCAGTGCTACTAA+AGG - tig0019197:183197-183216 None:intergenic 45.0%
TCCCTTGACAATTCCTTCCA+TGG - tig0019197:183236-183255 None:intergenic 45.0%
AGAGTTAACTGCAGCTCTTG+AGG + tig0019197:183298-183317 Msa1371430:intron 45.0%
! GCGGCGTTTTACACATTTTG+CGG - tig0019197:183470-183489 None:intergenic 45.0%
GCAAAATGTGTAAAACGCCG+CGG + tig0019197:183469-183488 Msa1371430:intron 45.0%
! TGTATGATGGTCGATGGACT+TGG - tig0019197:183582-183601 None:intergenic 45.0%
ACGTGTGTGAATGGTACAGA+AGG - tig0019197:183990-184009 None:intergenic 45.0%
CAAAAGGAGAAGCAAGAGGA+AGG - tig0019197:184021-184040 None:intergenic 45.0%
! CCTATATGTGGGTTAACGAG+CGG - tig0019197:184101-184120 None:intergenic 45.0%
!! AAGAAGTACCACTAGGCTTC+AGG + tig0019197:184305-184324 Msa1371430:intron 45.0%
ATGGATGGTTGATTAGAGGC+GGG + tig0019197:184572-184591 Msa1371430:intron 45.0%
! TACTGTTGCTGTTGGCAAAG+GGG - tig0019197:184847-184866 None:intergenic 45.0%
! CTACTGTTGCTGTTGGCAAA+GGG - tig0019197:184848-184867 None:intergenic 45.0%
! ACTACTGTTGCTGTTGGCAA+AGG - tig0019197:184849-184868 None:intergenic 45.0%
GCGGCGACGATATAATAAAC+TGG - tig0019197:185396-185415 None:intergenic 45.0%
! GACCTTTTCCTCCCATTTCA+TGG + tig0019197:185487-185506 Msa1371430:intron 45.0%
AGCAAGCCGTGTATCTGATA+TGG + tig0019197:186188-186207 Msa1371430:intron 45.0%
CCGATGCCATATCAGATACA+CGG - tig0019197:186197-186216 None:intergenic 45.0%
CCGTGTATCTGATATGGCAT+CGG + tig0019197:186194-186213 Msa1371430:intron 45.0%
AGCAAGCCGTGTATCTGATA+TGG + tig0019197:186188-186207 Msa1371430:intron 45.0%
CCGATGCCATATCAGATACA+CGG - tig0019197:186197-186216 None:intergenic 45.0%
CCGTGTATCTGATATGGCAT+CGG + tig0019197:186194-186213 Msa1371430:intron 45.0%
!! TCTCCTTGGAGCATTTTTCC+TGG - tig0019197:186494-186513 None:intergenic 45.0%
TTGACACCGTAACTTCTCCT+TGG - tig0019197:186508-186527 None:intergenic 45.0%
GAAAATTGCTGACGTCTCTG+AGG + tig0019197:186538-186557 Msa1371430:CDS 45.0%
GTCACAAGCTCACAATACCA+TGG + tig0019197:186607-186626 Msa1371430:three_prime_UTR 45.0%
ATTCCAATCGGCCAAAGGAT+TGG + tig0019197:186834-186853 Msa1371430:three_prime_UTR 45.0%
TTCCAATCGGCCAAAGGATT+GGG + tig0019197:186835-186854 Msa1371430:three_prime_UTR 45.0%
!!! ATTTTTTTTTTTTTTTTTTG+TGG - tig0019197:182370-182389 None:intergenic 5.0%
CGATTTCTGATTGGCACGGT+AGG - tig0019197:180743-180762 None:intergenic 50.0%
TGGTGGAAACTAGGCTTAGG+CGG + tig0019197:180989-181008 Msa1371430:intron 50.0%
ACTATGTGGGGTCAGCTACA+TGG - tig0019197:181201-181220 None:intergenic 50.0%
ATGTAGCTGACCCCACATAG+TGG + tig0019197:181200-181219 Msa1371430:intron 50.0%
TGTAGCTGACCCCACATAGT+GGG + tig0019197:181201-181220 Msa1371430:intron 50.0%
CCAACTCTTACCCCACTATG+TGG - tig0019197:181215-181234 None:intergenic 50.0%
! CCACATAGTGGGGTAAGAGT+TGG + tig0019197:181212-181231 Msa1371430:intron 50.0%
GCTTGTGCAGGTATGAACAC+CGG + tig0019197:181357-181376 Msa1371430:intron 50.0%
!! GAGCATACAGTTCTGAGAGC+CGG - tig0019197:181379-181398 None:intergenic 50.0%
! ATTGGATGAAGGCACGTGAG+TGG + tig0019197:182007-182026 Msa1371430:intron 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG + tig0019197:182047-182066 Msa1371430:intron 50.0%
TTTGCGAGTTTGGAGGGGAA+GGG + tig0019197:182054-182073 Msa1371430:intron 50.0%
GACATTGGAAGGAGGAGCTT+TGG + tig0019197:182129-182148 Msa1371430:intron 50.0%
CATTGGAAGGAGGAGCTTTG+GGG + tig0019197:182131-182150 Msa1371430:intron 50.0%
!! GTATTGGAGGAGGGTTTTGG+GGG + tig0019197:182208-182227 Msa1371430:intron 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - tig0019197:182542-182561 None:intergenic 50.0%
ACTCTCGCATGAGGGAAAGT+CGG - tig0019197:182574-182593 None:intergenic 50.0%
GAATTCCTGGCCAACTGATC+AGG + tig0019197:182709-182728 Msa1371430:intron 50.0%
! GAGGCCTTTAGTAGCACTGA+TGG + tig0019197:183190-183209 Msa1371430:CDS 50.0%
GGGACAAAAGGAGAAGCAAG+AGG - tig0019197:184025-184044 None:intergenic 50.0%
! GCGGAGTTTCGCGTATTTTG+AGG - tig0019197:184082-184101 None:intergenic 50.0%
CCGCTCGTTAACCCACATAT+AGG + tig0019197:184098-184117 Msa1371430:intron 50.0%
AGCGGTAGCTGCCTATATGT+GGG - tig0019197:184112-184131 None:intergenic 50.0%
! GAGTCGATTGATGGCTGACT+TGG + tig0019197:184700-184719 Msa1371430:intron 50.0%
!! TCGATTGATGGCTGACTTGG+TGG + tig0019197:184703-184722 Msa1371430:intron 50.0%
GATAGATATGCCGCAGCAGT+CGG + tig0019197:185320-185339 Msa1371430:CDS 50.0%
! TTATATCGTCGCCGCTTTGG+TGG + tig0019197:185401-185420 Msa1371430:intron 50.0%
TGGCCAGGAAAAATGCTCCA+AGG + tig0019197:186488-186507 Msa1371430:intron 50.0%
CAGTCAAAGCGGATCGATGA+TGG + tig0019197:186585-186604 Msa1371430:CDS 50.0%
TCCAATCGGCCAAAGGATTG+GGG + tig0019197:186836-186855 Msa1371430:three_prime_UTR 50.0%
! ATTGGAGTGCCCCAATCCTT+TGG - tig0019197:186848-186867 None:intergenic 50.0%
GTAGCTGACCCCACATAGTG+GGG + tig0019197:181202-181221 Msa1371430:intron 55.0%
!! AGAGAAGAGAGGCACCGAGA+GGG - tig0019197:181768-181787 None:intergenic 55.0%
!! TAGAGAAGAGAGGCACCGAG+AGG - tig0019197:181769-181788 None:intergenic 55.0%
GTTTGCGAGTTTGGAGGGGA+AGG + tig0019197:182053-182072 Msa1371430:intron 55.0%
GAGTTTGGAGGGGAAGGGAA+GGG + tig0019197:182059-182078 Msa1371430:intron 55.0%
AGGGAAGGGAAGGAAAGGCT+TGG + tig0019197:182073-182092 Msa1371430:intron 55.0%
!!! GAGGAGGGTTTTGGGGGTTT+GGG + tig0019197:182214-182233 Msa1371430:intron 55.0%
!!! AGGGTTTTGGGGGTTTGGGA+GGG + tig0019197:182218-182237 Msa1371430:intron 55.0%
CCAACTGAGCTAAGCTCACG+AGG - tig0019197:182298-182317 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + tig0019197:182295-182314 Msa1371430:intron 55.0%
! AGGGGAAGGAAAGGCTTTGG+GGG - tig0019197:182517-182536 None:intergenic 55.0%
GAGGGGAAGGAAAGGCTTTG+GGG - tig0019197:182518-182537 None:intergenic 55.0%
GGAGGGGAAGGAAAGGCTTT+GGG - tig0019197:182519-182538 None:intergenic 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG - tig0019197:182535-182554 None:intergenic 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG - tig0019197:182536-182555 None:intergenic 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG - tig0019197:182537-182556 None:intergenic 55.0%
CTGGCCAACTGATCAGGGTA+GGG + tig0019197:182715-182734 Msa1371430:intron 55.0%
GGATCCCTACCCTGATCAGT+TGG - tig0019197:182722-182741 None:intergenic 55.0%
CGCTATAGAAGTGGTAGCCG+CGG - tig0019197:183489-183508 None:intergenic 55.0%
CAGCGGTAGCTGCCTATATG+TGG - tig0019197:184113-184132 None:intergenic 55.0%
GGGTGCATGGCTGAATGCTA+TGG - tig0019197:184768-184787 None:intergenic 55.0%
! CTTATGCTCACCGACTGCTG+CGG - tig0019197:185333-185352 None:intergenic 55.0%
GCACAGTGCCAATCTTGCAG+AGG + tig0019197:185713-185732 Msa1371430:intron 55.0%
!! ACGGCTTGCTGTAGATCGTC+TGG - tig0019197:186178-186197 None:intergenic 55.0%
!! ACGGCTTGCTGTAGATCGTC+TGG - tig0019197:186178-186197 None:intergenic 55.0%
CGAGTTTGGAGGGGAAGGGA+AGG + tig0019197:182058-182077 Msa1371430:intron 60.0%
TTGGAGGGGAAGGGAAGGGA+AGG + tig0019197:182063-182082 Msa1371430:intron 60.0%
GGGGAAGGGAAGGGAAGGAA+AGG + tig0019197:182068-182087 Msa1371430:intron 60.0%
!!! GGAGGAGGGTTTTGGGGGTT+TGG + tig0019197:182213-182232 Msa1371430:intron 60.0%
!!! GAGGGTTTTGGGGGTTTGGG+AGG + tig0019197:182217-182236 Msa1371430:intron 60.0%
AAGGTCCGGGGTTCAAACCC+TGG + tig0019197:182341-182360 Msa1371430:intron 60.0%
!! GGGGAAGGAAAGGCTTTGGG+GGG - tig0019197:182516-182535 None:intergenic 60.0%
GGGAGGGGAAGGAAAGGCTT+TGG - tig0019197:182520-182539 None:intergenic 60.0%
TTGGAGGGGAGGGGAAGGAA+AGG - tig0019197:182526-182545 None:intergenic 60.0%
CCTACCCTGATCAGTTGGCC+AGG - tig0019197:182717-182736 None:intergenic 60.0%
CCTGGCCAACTGATCAGGGT+AGG + tig0019197:182714-182733 Msa1371430:intron 60.0%
!! GAAACTAGAAGGCGCCGCCT+TGG + tig0019197:183764-183783 Msa1371430:intron 60.0%
GCCCCAATCCTTTGGCCGAT+TGG - tig0019197:186840-186859 None:intergenic 60.0%
GGTGGCCAGGGTTTGAACCC+CGG - tig0019197:182349-182368 None:intergenic 65.0%
GGAGTTTGGAGGGGAGGGGA+AGG - tig0019197:182531-182550 None:intergenic 65.0%
!! ACTAGAAGGCGCCGCCTTGG+TGG + tig0019197:183767-183786 Msa1371430:intron 65.0%
Chromosome Type Strat End Strand Name
tig0019197 gene 180065 186972 180065 ID=Msa1371430;Name=Msa1371430
tig0019197 mRNA 180065 186972 180065 ID=Msa1371430-mRNA-1;Parent=Msa1371430;Name=Msa1371430-mRNA-1;_AED=0.09;_eAED=0.09;_QI=76|0.88|0.9|1|0.77|0.6|10|333|274
tig0019197 exon 180065 180114 180065 ID=Msa1371430-mRNA-1:exon:2174;Parent=Msa1371430-mRNA-1
tig0019197 exon 180151 180326 180151 ID=Msa1371430-mRNA-1:exon:2175;Parent=Msa1371430-mRNA-1
tig0019197 exon 180407 180580 180407 ID=Msa1371430-mRNA-1:exon:2176;Parent=Msa1371430-mRNA-1
tig0019197 exon 180687 180766 180687 ID=Msa1371430-mRNA-1:exon:2177;Parent=Msa1371430-mRNA-1
tig0019197 exon 181367 181406 181367 ID=Msa1371430-mRNA-1:exon:2178;Parent=Msa1371430-mRNA-1
tig0019197 exon 181563 181670 181563 ID=Msa1371430-mRNA-1:exon:2179;Parent=Msa1371430-mRNA-1
tig0019197 exon 183184 183264 183184 ID=Msa1371430-mRNA-1:exon:2180;Parent=Msa1371430-mRNA-1
tig0019197 exon 185260 185341 185260 ID=Msa1371430-mRNA-1:exon:2181;Parent=Msa1371430-mRNA-1
tig0019197 exon 186495 186655 186495 ID=Msa1371430-mRNA-1:exon:2182;Parent=Msa1371430-mRNA-1
tig0019197 exon 186691 186972 186691 ID=Msa1371430-mRNA-1:exon:2183;Parent=Msa1371430-mRNA-1
tig0019197 five_prime_UTR 180065 180114 180065 ID=Msa1371430-mRNA-1:five_prime_utr;Parent=Msa1371430-mRNA-1
tig0019197 five_prime_UTR 180151 180176 180151 ID=Msa1371430-mRNA-1:five_prime_utr;Parent=Msa1371430-mRNA-1
tig0019197 CDS 180177 180326 180177 ID=Msa1371430-mRNA-1:cds;Parent=Msa1371430-mRNA-1
tig0019197 CDS 180407 180580 180407 ID=Msa1371430-mRNA-1:cds;Parent=Msa1371430-mRNA-1
tig0019197 CDS 180687 180766 180687 ID=Msa1371430-mRNA-1:cds;Parent=Msa1371430-mRNA-1
tig0019197 CDS 181367 181406 181367 ID=Msa1371430-mRNA-1:cds;Parent=Msa1371430-mRNA-1
tig0019197 CDS 181563 181670 181563 ID=Msa1371430-mRNA-1:cds;Parent=Msa1371430-mRNA-1
tig0019197 CDS 183184 183264 183184 ID=Msa1371430-mRNA-1:cds;Parent=Msa1371430-mRNA-1
tig0019197 CDS 185260 185341 185260 ID=Msa1371430-mRNA-1:cds;Parent=Msa1371430-mRNA-1
tig0019197 CDS 186495 186604 186495 ID=Msa1371430-mRNA-1:cds;Parent=Msa1371430-mRNA-1
tig0019197 three_prime_UTR 186605 186655 186605 ID=Msa1371430-mRNA-1:three_prime_utr;Parent=Msa1371430-mRNA-1
tig0019197 three_prime_UTR 186691 186972 186691 ID=Msa1371430-mRNA-1:three_prime_utr;Parent=Msa1371430-mRNA-1
Gene Sequence

>Msa1371430

ATGAGTGGCAATTTGGATGAACTGGTTTGTGAGATTGATTGCCGGAAGATGAATGTTGTGGAGCAGTTAGATGAATTAAGAGAGAGAATCAATAAGGAAGGTGTTGATTCTTCTGTGCACAAGTTGTACAATTCAATCAAGTCTTTGAAGGATCTTGAAAGGAAGGAAAATCAGTTTCTGTTCAAACGCGATTCTAAGCATTCAGAACTTCAATCTGAGATTAATGAATTAGAGAGGAAAATAGCAAATGACTGTGGTGATGATAGCAAGAGTCTTCATCATTCTCTTAGCGAATCACTTGGAAGAGTTGATTTGATGAAAAAGGAACTTGCTGCTAGACTAAGGGATGTAGTAGCAGTAAGACGACAAATTGATGACCTACCGTGCCAATCAGAAATCGTCCAGTATGAACACCGGCTCTCAGAACTGTATGCTCAAATCCAGGGAAAACATCGACAGACTCGCAAATACTATTCTACCTACAATGCTCTTTTGGAAATAAAAGAATTGATGTTAAAGGAAACATCTTTATTGAATTCGATCATTTCACAGTTTCAAGAGGCCTTTAGTAGCACTGATGGTCGTATAAAGCTTGTTCATTCCATGGAAGGAATTGTCAAGGGAAGTGAACAGAAACTACGAAAGGTTCAACTAGGGCTTCAAGAAGAAGAGACAAATCTTAATGATCTTAAGGATAGATATGCCGCAGCAGTCGGAAAAATGCTCCAAGGAGAAGTTACGGTGTCAAAGTTCCAAATGAAAATTGCTGACGTCTCTGAGGTTGTGTTGCATGAAATATTTGCATCAGTCAAAGCGGATCGATGA

Protein sequence

>Msa1371430

MSGNLDELVCEIDCRKMNVVEQLDELRERINKEGVDSSVHKLYNSIKSLKDLERKENQFLFKRDSKHSELQSEINELERKIANDCGDDSKSLHHSLSESLGRVDLMKKELAARLRDVVAVRRQIDDLPCQSEIVQYEHRLSELYAQIQGKHRQTRKYYSTYNALLEIKELMLKETSLLNSIISQFQEAFSSTDGRIKLVHSMEGIVKGSEQKLRKVQLGLQEEETNLNDLKDRYAAAVGKMLQGEVTVSKFQMKIADVSEVVLHEIFASVKADR*