AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0258030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0258030 MtrunA17_Chr2g0320051 95.597 318 14 0 23 340 1 318 0.0 623
Msa0258030 MtrunA17_Chr2g0320061 91.195 318 28 0 23 340 1 318 0.0 597
Msa0258030 MtrunA17_Chr2g0320101 85.535 318 45 1 23 340 1 317 0.0 558
Msa0258030 MtrunA17_Chr2g0320071 83.648 318 51 1 23 340 1 317 0.0 545
Msa0258030 MtrunA17_Chr2g0320031 82.132 319 56 1 23 340 1 319 0.0 544
Msa0258030 MtrunA17_Chr2g0320091 75.235 319 77 2 23 340 1 318 5.93e-175 488
Msa0258030 MtrunA17_Chr3g0129051 67.774 301 94 2 42 340 23 322 1.05e-145 414
Msa0258030 MtrunA17_Chr3g0129061 65.495 313 105 3 30 340 11 322 9.50e-141 401
Msa0258030 MtrunA17_Chr3g0129041 64.286 322 110 3 21 340 4 322 8.90e-138 394
Msa0258030 MtrunA17_Chr7g0244461 58.065 310 129 1 31 340 4 312 3.88e-131 376
Msa0258030 MtrunA17_Chr5g0438021 59.365 315 124 3 29 340 12 325 5.05e-131 377
Msa0258030 MtrunA17_Chr7g0244451 58.446 296 122 1 45 340 22 316 7.43e-126 363
Msa0258030 MtrunA17_Chr3g0106921 54.777 314 138 3 30 340 8 320 3.26e-125 362
Msa0258030 MtrunA17_Chr1g0213061 54.969 322 142 2 21 340 1 321 5.35e-121 351
Msa0258030 MtrunA17_Chr3g0106901 58.599 314 128 2 27 340 12 323 1.20e-120 350
Msa0258030 MtrunA17_Chr4g0013171 55.732 314 136 3 29 340 9 321 1.32e-119 347
Msa0258030 MtrunA17_Chr3g0114451 56.090 312 136 1 29 340 8 318 1.33e-119 347
Msa0258030 MtrunA17_Chr4g0013201 56.081 296 129 1 45 340 44 338 1.70e-117 343
Msa0258030 MtrunA17_Chr5g0432441 56.667 300 125 3 45 340 28 326 3.54e-117 342
Msa0258030 MtrunA17_Chr5g0432351 56.954 302 125 4 43 340 21 321 1.43e-116 340
Msa0258030 MtrunA17_Chr5g0432341 56.954 302 125 4 43 340 21 321 1.44e-115 337
Msa0258030 MtrunA17_Chr7g0224371 52.381 315 146 3 28 340 10 322 4.47e-115 336
Msa0258030 MtrunA17_Chr4g0038171 53.797 316 139 3 29 340 9 321 5.19e-114 333
Msa0258030 MtrunA17_Chr4g0043391 54.140 314 137 3 31 340 14 324 6.76e-114 333
Msa0258030 MtrunA17_Chr5g0432331 55.063 316 136 5 29 340 39 352 5.22e-113 332
Msa0258030 MtrunA17_Chr4g0013181 55.973 293 126 3 50 340 62 353 1.32e-112 331
Msa0258030 MtrunA17_Chr3g0107881 51.746 315 148 3 30 340 10 324 3.28e-112 329
Msa0258030 MtrunA17_Chr4g0013191 50.733 341 151 5 16 340 1 340 8.72e-112 328
Msa0258030 MtrunA17_Chr4g0038151 52.038 319 146 4 26 340 6 321 2.24e-110 324
Msa0258030 MtrunA17_Chr5g0404721 51.827 301 138 1 47 340 30 330 3.72e-110 324
Msa0258030 MtrunA17_Chr4g0038161 54.153 301 133 3 44 340 21 320 2.44e-109 321
Msa0258030 MtrunA17_Chr5g0402581 50.915 328 151 4 21 340 1 326 4.84e-108 318
Msa0258030 MtrunA17_Chr5g0402571 52.215 316 138 5 33 340 16 326 1.65e-106 314
Msa0258030 MtrunA17_Chr8g0372601 49.834 301 144 1 47 340 30 330 9.58e-105 310
Msa0258030 MtrunA17_Chr1g0175561 50.163 307 144 3 43 340 20 326 1.11e-102 305
Msa0258030 MtrunA17_Chr2g0299691 49.689 322 145 4 30 340 43 358 3.36e-101 302
Msa0258030 MtrunA17_Chr4g0070951 50.327 306 140 3 45 340 26 329 3.91e-101 301
Msa0258030 MtrunA17_Chr7g0258811 48.860 307 148 3 43 340 65 371 2.88e-100 300
Msa0258030 MtrunA17_Chr1g0155611 50.000 302 143 2 47 340 46 347 6.60e-97 291
Msa0258030 MtrunA17_Chr2g0292151 47.231 307 154 2 42 340 24 330 2.11e-93 282
Msa0258030 MtrunA17_Chr2g0292091 47.039 304 153 2 45 340 22 325 3.64e-93 281
Msa0258030 MtrunA17_Chr2g0292211 45.570 316 164 2 33 340 26 341 3.75e-93 281
Msa0258030 MtrunA17_Chr4g0068621 45.875 303 159 1 43 340 34 336 1.29e-92 279
Msa0258030 MtrunA17_Chr2g0292271 46.405 306 156 2 43 340 25 330 2.41e-92 279
Msa0258030 MtrunA17_Chr5g0432401 48.254 315 118 7 29 339 12 285 9.84e-92 275
Msa0258030 MtrunA17_Chr2g0292251 45.928 307 158 2 42 340 23 329 1.13e-91 278
Msa0258030 MtrunA17_Chr4g0013721 47.386 306 150 4 42 340 95 396 3.11e-91 278
Msa0258030 MtrunA17_Chr2g0292261 45.538 325 169 2 24 340 6 330 5.48e-91 276
Msa0258030 MtrunA17_Chr2g0292181 44.615 325 172 2 24 340 15 339 7.63e-91 276
Msa0258030 MtrunA17_Chr2g0292111 46.254 307 157 2 42 340 24 330 8.33e-91 275
Msa0258030 MtrunA17_Chr2g0292291 45.092 326 170 3 24 340 7 332 2.50e-90 274
Msa0258030 MtrunA17_Chr2g0291751 45.541 314 163 2 35 340 17 330 3.76e-90 274
Msa0258030 MtrunA17_Chr2g0292241 45.397 315 162 4 35 340 17 330 1.66e-89 272
Msa0258030 MtrunA17_Chr5g0400331 46.906 307 149 3 47 340 26 331 1.91e-89 271
Msa0258030 MtrunA17_Chr2g0292101 46.053 304 156 2 45 340 23 326 1.17e-87 267
Msa0258030 MtrunA17_Chr3g0128061 43.034 323 173 4 28 340 5 326 3.81e-86 263
Msa0258030 MtrunA17_Chr5g0421411 46.595 279 138 5 73 340 7 285 3.90e-85 258
Msa0258030 MtrunA17_Chr6g0477071 40.059 337 190 9 6 340 16 342 6.55e-84 257
Msa0258030 MtrunA17_Chr4g0013821 43.279 305 162 4 43 340 24 324 3.04e-83 256
Msa0258030 MtrunA17_Chr2g0322861 43.312 314 168 4 35 340 75 386 6.70e-80 248
Msa0258030 MtrunA17_Chr4g0063671 42.025 326 169 7 29 340 1 320 4.98e-77 239
Msa0258030 MtrunA17_Chr4g0024121 40.123 324 182 5 27 340 5 326 1.88e-76 238
Msa0258030 MtrunA17_Chr7g0268501 41.066 319 176 4 29 340 7 320 1.31e-75 235
Msa0258030 MtrunA17_Chr7g0268521 41.066 319 176 4 29 340 7 320 1.31e-75 235
Msa0258030 MtrunA17_Chr1g0204011 39.130 322 181 8 27 340 8 322 3.33e-75 234
Msa0258030 MtrunA17_Chr2g0279041 42.857 301 155 6 51 340 31 325 1.33e-74 233
Msa0258030 MtrunA17_Chr8g0371381 40.260 308 166 6 42 340 21 319 2.15e-74 232
Msa0258030 MtrunA17_Chr5g0405991 39.450 327 175 7 23 340 4 316 1.39e-73 230
Msa0258030 MtrunA17_Chr1g0157051 39.818 329 172 9 21 339 5 317 4.95e-73 229
Msa0258030 MtrunA17_Chr1g0148021 40.248 323 179 7 29 340 9 328 1.63e-72 228
Msa0258030 MtrunA17_Chr1g0194151 39.940 333 182 7 20 340 7 333 1.01e-71 226
Msa0258030 MtrunA17_Chr7g0225221 37.888 322 194 4 23 340 1 320 2.11e-71 224
Msa0258030 MtrunA17_Chr5g0401431 38.298 329 190 5 23 339 1 328 1.26e-70 223
Msa0258030 MtrunA17_Chr1g0188431 38.154 325 189 8 21 340 10 327 3.28e-70 222
Msa0258030 MtrunA17_Chr7g0254201 38.361 305 169 5 45 340 18 312 1.55e-69 219
Msa0258030 MtrunA17_Chr6g0460711 39.937 318 181 5 28 340 2 314 4.37e-69 218
Msa0258030 MtrunA17_Chr1g0194271 38.529 340 184 7 20 340 7 340 1.95e-68 218
Msa0258030 MtrunA17_Chr6g0467161 39.815 324 177 8 29 340 19 336 3.86e-68 217
Msa0258030 MtrunA17_Chr1g0164891 41.528 301 164 5 51 340 93 392 7.40e-68 218
Msa0258030 MtrunA17_Chr7g0254231 39.726 292 168 6 51 340 26 311 8.19e-68 215
Msa0258030 MtrunA17_Chr4g0053871 38.390 323 190 5 22 339 5 323 9.93e-68 215
Msa0258030 MtrunA17_Chr4g0046131 38.439 346 196 8 5 338 4 344 1.50e-67 215
Msa0258030 MtrunA17_Chr2g0296621 38.462 299 166 7 50 340 53 341 1.37e-65 210
Msa0258030 MtrunA17_Chr4g0076211 39.057 297 164 6 52 340 46 333 2.40e-65 209
Msa0258030 MtrunA17_Chr4g0075241 35.430 302 186 4 46 340 28 327 7.28e-62 200
Msa0258030 MtrunA17_Chr1g0181511 34.551 301 190 4 45 340 25 323 7.74e-62 200
Msa0258030 MtrunA17_Chr1g0197411 35.220 318 195 5 33 340 14 330 9.23e-62 200
Msa0258030 MtrunA17_Chr2g0316481 37.160 331 166 8 50 340 79 407 1.02e-61 202
Msa0258030 MtrunA17_Chr3g0114461 54.348 184 84 0 157 340 9 192 2.38e-61 194
Msa0258030 MtrunA17_Chr2g0278671 39.032 310 171 8 43 340 20 323 6.83e-61 197
Msa0258030 MtrunA17_Chr2g0316791 36.556 331 168 8 50 340 79 407 6.99e-61 200
Msa0258030 MtrunA17_Chr6g0467121 39.384 292 169 6 51 340 78 363 7.21e-61 199
Msa0258030 MtrunA17_Chr3g0136751 35.780 327 196 3 23 340 1 322 1.10e-60 197
Msa0258030 MtrunA17_Chr2g0316831 36.667 330 167 8 50 339 115 442 1.65e-60 200
Msa0258030 MtrunA17_Chr4g0072091 38.206 301 172 5 46 336 23 319 2.37e-60 196
Msa0258030 MtrunA17_Chr2g0279061 43.295 261 131 6 91 340 12 266 1.31e-58 190
Msa0258030 MtrunA17_Chr2g0316191 34.940 332 173 8 50 340 79 408 3.79e-58 193
Msa0258030 MtrunA17_Chr2g0329641 34.441 331 192 7 29 340 11 335 3.94e-58 191
Msa0258030 MtrunA17_Chr8g0364291 35.505 307 188 5 43 340 19 324 6.83e-58 190
Msa0258030 MtrunA17_Chr1g0181481 34.219 301 191 4 45 340 25 323 8.00e-58 189
Msa0258030 MtrunA17_Chr1g0181431 33.223 301 194 4 45 340 25 323 9.09e-57 187
Msa0258030 MtrunA17_Chr6g0467251 35.168 327 198 7 21 336 1 324 1.27e-56 187
Msa0258030 MtrunA17_Chr6g0451571 34.194 310 187 6 43 340 30 334 7.00e-55 182
Msa0258030 MtrunA17_Chr2g0311241 32.162 370 168 8 50 339 63 429 2.77e-53 181
Msa0258030 MtrunA17_Chr2g0311251 34.043 329 175 8 50 339 14 339 3.41e-53 178
Msa0258030 MtrunA17_Chr4g0074851 33.333 327 203 6 27 340 4 328 3.27e-52 175
Msa0258030 MtrunA17_Chr5g0413051 34.304 309 176 7 51 340 77 377 1.39e-50 172
Msa0258030 MtrunA17_Chr3g0114491 64.220 109 39 0 46 154 17 125 8.03e-45 150
Msa0258030 MtrunA17_Chr2g0292281 39.810 211 107 4 139 340 17 216 7.64e-43 148
Msa0258030 MtrunA17_Chr2g0316141 36.531 271 147 10 93 340 11 279 3.75e-42 147
Msa0258030 MtrunA17_Chr2g0316181 36.531 271 147 10 93 340 11 279 3.75e-42 147
Msa0258030 MtrunA17_Chr4g0004591 28.707 317 158 4 50 339 80 355 1.43e-39 143
Msa0258030 MtrunA17_Chr2g0316811 34.583 240 131 5 50 265 53 290 1.44e-39 142
Msa0258030 MtrunA17_Chr5g0432321 53.846 117 53 1 168 284 17 132 7.73e-36 126
Msa0258030 MtrunA17_Chr5g0432361 52.222 90 41 2 251 339 20 108 2.19e-24 95.9
Msa0258030 MtrunA17_Chr3g0104101 40.411 146 74 7 207 340 5 149 4.11e-24 96.3
Msa0258030 MtrunA17_Chr1g0181501 30.159 189 125 4 157 340 3 189 8.37e-22 91.3
Msa0258030 MtrunA17_Chr1g0181491 38.596 114 68 2 44 157 9 120 1.38e-21 89.7
Msa0258030 MtrunA17_Chr7g0254181 39.048 105 60 2 109 213 22 122 1.07e-18 82.0
Msa0258030 MtrunA17_Chr4g0013811 47.297 74 39 0 158 231 6 79 1.23e-17 76.6
Msa0258030 MtrunA17_Chr6g0468731 51.389 72 31 2 86 157 22 89 5.31e-17 75.1
Msa0258030 MtrunA17_Chr2g0316771 28.333 180 89 5 195 336 5 182 1.64e-15 73.9
Msa0258030 MtrunA17_Chr1g0196191 55.224 67 29 1 89 155 27 92 3.63e-15 72.0
Msa0258030 MtrunA17_Chr3g0137751 24.632 272 139 8 62 319 91 310 3.98e-15 75.1
Msa0258030 MtrunA17_Chr7g0268491 43.529 85 46 1 256 340 15 97 4.21e-13 64.7
Msa0258030 MtrunA17_Chr7g0254171 29.545 132 92 1 93 224 4 134 3.61e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0258030 AT5G05340.1 62.752 298 108 2 45 340 28 324 6.60e-135 387
Msa0258030 AT5G58400.1 55.732 314 135 3 30 340 13 325 1.66e-116 340
Msa0258030 AT5G58390.1 57.508 313 129 3 31 340 5 316 5.69e-116 338
Msa0258030 AT1G14550.1 50.309 324 149 4 19 340 8 321 4.04e-108 318
Msa0258030 AT4G36430.1 49.346 306 148 1 42 340 25 330 4.62e-108 319
Msa0258030 AT5G66390.1 48.485 330 156 2 25 340 4 333 1.70e-106 315
Msa0258030 AT1G14540.1 48.882 313 159 1 29 340 3 315 6.24e-106 313
Msa0258030 AT3G50990.1 48.632 329 161 2 20 340 13 341 2.48e-105 312
Msa0258030 AT2G18140.1 49.502 301 145 1 47 340 35 335 6.59e-105 311
Msa0258030 AT2G18150.1 48.845 303 148 1 45 340 34 336 3.60e-104 309
Msa0258030 AT5G06720.1 47.590 332 162 4 20 340 3 333 5.78e-103 306
Msa0258030 AT1G44970.1 52.303 304 137 2 45 340 43 346 1.12e-102 306
Msa0258030 AT1G49570.1 52.365 296 130 4 51 336 52 346 2.61e-102 305
Msa0258030 AT5G06730.1 46.364 330 160 4 19 340 14 334 1.42e-100 301
Msa0258030 AT3G32980.1 47.664 321 158 3 30 340 14 334 3.37e-98 295
Msa0258030 AT2G38390.1 47.742 310 153 3 40 340 24 333 2.88e-97 292
Msa0258030 AT4G08780.1 48.544 309 147 5 43 340 20 327 4.96e-97 291
Msa0258030 AT5G19890.1 47.516 322 153 5 29 340 12 327 5.07e-96 288
Msa0258030 AT4G08770.1 47.078 308 153 3 43 340 20 327 1.29e-94 285
Msa0258030 AT3G49120.1 46.273 322 163 3 29 340 14 335 1.49e-94 285
Msa0258030 AT3G49110.1 45.031 322 167 3 29 340 15 336 2.47e-92 280
Msa0258030 AT2G38380.1 45.768 319 164 3 31 340 15 333 7.51e-91 276
Msa0258030 AT2G22420.1 43.077 325 172 5 23 340 1 319 1.45e-88 269
Msa0258030 AT1G68850.1 39.368 348 178 8 9 340 5 335 1.09e-87 267
Msa0258030 AT4G16270.1 46.801 297 149 3 51 340 54 348 1.46e-87 267
Msa0258030 AT2G35380.1 44.377 329 163 5 31 340 8 335 1.54e-85 261
Msa0258030 AT5G19880.1 44.720 322 166 4 30 340 9 329 2.99e-84 258
Msa0258030 AT5G15180.1 42.006 319 175 4 29 340 14 329 2.10e-83 256
Msa0258030 AT3G01190.1 41.104 326 179 6 23 340 1 321 1.87e-78 243
Msa0258030 AT1G05260.1 41.118 304 169 4 45 340 24 325 3.15e-77 240
Msa0258030 AT4G11290.1 41.176 306 172 2 43 340 21 326 6.94e-77 239
Msa0258030 AT3G03670.1 41.640 317 175 4 31 340 8 321 4.41e-76 237
Msa0258030 AT5G42180.1 40.062 322 179 6 26 339 1 316 6.36e-76 236
Msa0258030 AT5G64120.1 44.257 296 153 5 51 340 39 328 1.79e-75 236
Msa0258030 AT5G14130.1 39.812 319 180 6 30 340 16 330 5.36e-75 234
Msa0258030 AT5G14130.2 39.812 319 180 6 30 340 57 371 2.03e-74 234
Msa0258030 AT2G41480.1 40.823 316 168 7 38 340 19 328 6.75e-74 231
Msa0258030 AT1G05240.1 40.132 304 162 6 50 340 29 325 7.58e-74 231
Msa0258030 AT1G05250.1 40.132 304 162 6 50 340 29 325 7.58e-74 231
Msa0258030 AT3G21770.1 39.274 303 174 4 42 336 24 324 3.99e-72 227
Msa0258030 AT5G17820.1 40.594 303 162 6 45 340 22 313 1.75e-71 225
Msa0258030 AT1G71695.1 41.924 291 163 5 50 336 47 335 3.64e-71 225
Msa0258030 AT5G17820.2 40.594 303 162 6 45 340 75 366 1.34e-70 224
Msa0258030 AT4G37530.1 40.256 313 166 7 43 340 23 329 5.11e-70 221
Msa0258030 AT5G67400.1 38.700 323 186 5 29 340 8 329 1.71e-69 220
Msa0258030 AT4G30170.1 40.909 308 165 7 44 340 24 325 1.71e-69 220
Msa0258030 AT5G39580.1 42.088 297 159 6 51 340 29 319 5.84e-69 218
Msa0258030 AT2G18980.1 39.557 316 176 5 35 340 13 323 3.27e-68 217
Msa0258030 AT3G49960.1 38.924 316 182 4 35 340 15 329 7.43e-68 216
Msa0258030 AT4G37520.1 38.562 306 177 5 45 340 25 329 3.28e-67 214
Msa0258030 AT4G33420.1 39.519 291 169 6 51 340 41 325 7.81e-66 211
Msa0258030 AT3G28200.1 37.748 302 184 4 42 340 16 316 1.86e-65 209
Msa0258030 AT4G33420.2 39.519 291 169 6 51 340 88 372 2.78e-65 211
Msa0258030 AT1G30870.1 38.585 311 165 8 47 340 44 345 4.32e-65 209
Msa0258030 AT4G37520.2 38.235 306 175 6 45 340 25 326 4.90e-65 209
Msa0258030 AT5G40150.1 37.294 303 185 4 42 340 27 328 6.29e-65 208
Msa0258030 AT4G33870.1 34.743 331 168 7 50 336 71 397 1.07e-64 210
Msa0258030 AT5G51890.1 36.760 321 184 8 29 340 12 322 2.96e-64 206
Msa0258030 AT4G26010.1 38.125 320 185 8 23 340 1 309 7.88e-64 205
Msa0258030 AT4G25980.1 36.858 331 191 7 23 340 1 326 8.65e-64 206
Msa0258030 AT2G35380.2 46.531 245 117 4 109 340 4 247 1.52e-63 202
Msa0258030 AT4G26010.2 38.006 321 186 8 22 340 28 337 1.60e-63 205
Msa0258030 AT2G34060.1 38.264 311 179 6 40 338 35 344 5.79e-63 204
Msa0258030 AT5G64110.1 40.060 332 174 8 26 340 7 330 1.56e-62 202
Msa0258030 AT4G17690.1 37.288 295 180 4 50 340 29 322 2.75e-62 201
Msa0258030 AT2G39040.1 38.978 313 170 8 44 340 43 350 6.09e-61 199
Msa0258030 AT5G64100.1 39.000 300 166 6 50 340 40 331 8.00e-61 198
Msa0258030 AT1G77100.1 39.450 327 181 11 23 340 1 319 1.88e-60 197
Msa0258030 AT4G37530.2 41.016 256 141 3 43 288 23 278 3.53e-60 195
Msa0258030 AT4G31760.1 35.045 331 197 4 19 340 5 326 5.78e-59 193
Msa0258030 AT1G34510.1 37.134 307 185 6 35 340 10 309 1.00e-58 192
Msa0258030 AT5G22410.1 35.258 329 192 9 21 337 3 322 1.12e-58 192
Msa0258030 AT5G47000.1 35.423 319 197 5 30 340 13 330 1.66e-58 192
Msa0258030 AT5G24070.1 36.577 298 170 5 55 340 45 335 1.95e-58 192
Msa0258030 AT2G24800.1 35.948 306 181 4 45 340 29 329 5.75e-57 188
Msa0258030 AT2G43480.1 32.945 343 207 7 13 340 1 335 2.92e-56 186
Msa0258030 AT1G24110.1 35.714 322 186 7 33 340 8 322 1.40e-55 184
Msa0258030 AT4G21960.1 32.822 326 204 5 28 340 4 327 7.35e-54 180
Msa0258030 AT2G37130.1 33.654 312 194 7 37 340 21 327 7.33e-53 177
Msa0258030 AT3G17070.1 36.452 310 179 9 44 340 35 339 2.78e-52 176
Msa0258030 AT2G37130.2 33.445 299 187 6 50 340 2 296 3.57e-52 174
Msa0258030 AT4G25980.2 40.686 204 116 4 12 214 35 234 2.17e-44 154
Msa0258030 AT5G39580.2 41.117 197 107 4 51 247 29 216 1.38e-42 148
Msa0258030 AT3G17070.2 36.604 265 149 10 89 340 18 276 5.05e-40 142
Msa0258030 AT2G24800.2 38.710 186 108 2 45 228 29 210 4.12e-37 134
Msa0258030 AT3G42570.1 37.634 93 57 1 123 214 57 149 6.65e-14 68.9
Msa0258030 AT4G35970.2 27.727 220 104 8 81 289 33 208 6.02e-11 62.0

Find 69 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATATTGTGTTGGAGATTT+TGG 0.083990 2_2:-54006887 Msa0258030:three_prime_UTR
TGTAACAAATAATTTGTTTA+AGG 0.133122 2_2:+54009538 None:intergenic
AAAGCAAATTGTCCTCTTTC+TGG 0.146610 2_2:-54007220 Msa0258030:CDS
TTCTGGTGGTGACACAAATT+TGG 0.219197 2_2:-54007203 Msa0258030:CDS
AGAGACCTTACAGTCCTTTC+TGG 0.248623 2_2:-54007334 Msa0258030:CDS
GATGACACTTCCACCTTTAC+CGG 0.277634 2_2:-54008660 Msa0258030:CDS
TTCTCAATTGTGACCCTGTT+TGG 0.279624 2_2:-54006727 Msa0258030:three_prime_UTR
TGTTGGTTCTCAAGTTTCTT+TGG 0.288110 2_2:-54007077 Msa0258030:CDS
GTTCTCAAGTTTCTTTGGTT+AGG 0.293746 2_2:-54007072 Msa0258030:CDS
TTTCATTGTATATGCGATTT+CGG 0.299036 2_2:+54007275 None:intergenic
CAGAAGCTGGTGAAGGGATT+TGG 0.309796 2_2:+54007404 None:intergenic
GATCATTTCCCTGCGCACTA+TGG 0.326698 2_2:+54009430 None:intergenic
CAAGTTCTTCCATAGAAGTT+AGG 0.346883 2_2:+54009467 None:intergenic
TTCTCAAGTTTCTTTGGTTA+GGG 0.349477 2_2:-54007071 Msa0258030:CDS
GTCCTCTCACAGGGACTAAT+GGG 0.352141 2_2:-54006979 Msa0258030:CDS
AGTCCTCTCACAGGGACTAA+TGG 0.352884 2_2:-54006980 Msa0258030:CDS
ATGCACTTGTTTATCCAAAC+AGG 0.355381 2_2:+54006713 None:intergenic
AGGGATCTTGTTGCTAATAA+AGG 0.362589 2_2:-54007133 Msa0258030:CDS
CCCTGCGCACTATGGTTTGA+AGG 0.370381 2_2:+54009438 None:intergenic
ACATGTGCTAGAGTGGAAAA+AGG 0.373535 2_2:+54010030 None:intergenic
ATGTGATGGATCAATCTTAT+TGG 0.376187 2_2:-54008682 Msa0258030:CDS
GTTAGGGCTTATAGTAGAAA+TGG 0.387567 2_2:-54007055 Msa0258030:CDS
TGAATTAATTGATCATGAAT+TGG 0.390705 2_2:-54006931 Msa0258030:exon
ATCAATAATGAAGCCCGAAT+TGG 0.393557 2_2:-54009401 Msa0258030:CDS
GGGAAATTAGAAAGAATTGC+AGG 0.409781 2_2:-54006958 Msa0258030:CDS
AAGTATAGAAGCACCAATTC+GGG 0.411390 2_2:+54009388 None:intergenic
GAAGTATAGAAGCACCAATT+CGG 0.422908 2_2:+54009387 None:intergenic
TAGTTGTTGTCAAAAGTAAC+TGG 0.428640 2_2:+54007160 None:intergenic
CGCACTATGGTTTGAAGGCT+AGG 0.432460 2_2:+54009443 None:intergenic
TTTGGATAATTGATTAAGCA+GGG 0.478241 2_2:-54006869 Msa0258030:three_prime_UTR
TTGACATTCTGCTTGGCCTA+TGG 0.491237 2_2:+54007303 None:intergenic
GCCTTCAAACCATAGTGCGC+AGG 0.498639 2_2:-54009439 Msa0258030:CDS
GTCTTACTTAAATCAATGAA+TGG 0.508065 2_2:-54006802 Msa0258030:three_prime_UTR
CCCTCATGGGTAGTACCACT+TGG 0.511184 2_2:-54007469 Msa0258030:CDS
AAGAGACTTTGCTGTTGCTA+TGG 0.520915 2_2:-54007020 Msa0258030:CDS
CAATTGAATAAATATTGTGT+TGG 0.521150 2_2:-54006896 Msa0258030:three_prime_UTR
CTAGCACTTGCAACTAGAGA+TGG 0.521717 2_2:-54008525 Msa0258030:CDS
AATTAATTTATATAGCTTGG+AGG 0.537880 2_2:-54007493 Msa0258030:intron
TTTGCAAGAAGCTTCAACAC+TGG 0.540754 2_2:+54008572 None:intergenic
CTTGCATCTCTTCTTCCAAG+TGG 0.553652 2_2:+54007454 None:intergenic
TGCAAAGTTTGTGTCAATGT+TGG 0.554512 2_2:+54007252 None:intergenic
TATAGCTTGGAGGACCCTCA+TGG 0.556831 2_2:-54007483 Msa0258030:intron
AACTAGAGATGGAATAGCAC+TGG 0.557344 2_2:-54008514 Msa0258030:intron
TTTGTGTCACCACCAGAAAG+AGG 0.559647 2_2:+54007208 None:intergenic
AGTAGAATTAGTCCTCTCAC+AGG 0.564035 2_2:-54006989 Msa0258030:CDS
GACATATACATGTGCTAGAG+TGG 0.565511 2_2:+54010023 None:intergenic
GCACTATGGTTTGAAGGCTA+GGG 0.566432 2_2:+54009444 None:intergenic
CTTTCTGGTGCACACACCAT+AGG 0.568368 2_2:-54007319 Msa0258030:CDS
GTGCACCAGAAAGGACTGTA+AGG 0.568848 2_2:+54007329 None:intergenic
GATAGGTCAGAAGCTGGTGA+AGG 0.571185 2_2:+54007397 None:intergenic
GCAAATTGTCCTCTTTCTGG+TGG 0.573877 2_2:-54007217 Msa0258030:CDS
ACTAAAATGTTTCAAAACAA+AGG 0.575966 2_2:-54007367 Msa0258030:CDS
TGGATAATTGATTAAGCAGG+GGG 0.577614 2_2:-54006867 Msa0258030:three_prime_UTR
TTAATTGATCATGAATTGGA+GGG 0.580275 2_2:-54006927 Msa0258030:exon
CCTTCAAACCATAGTGCGCA+GGG 0.588313 2_2:-54009438 Msa0258030:CDS
ATTAATTGATCATGAATTGG+AGG 0.589702 2_2:-54006928 Msa0258030:exon
TGCACTTGTTTATCCAAACA+GGG 0.591792 2_2:+54006714 None:intergenic
TCCCCATTAGTCCCTGTGAG+AGG 0.604797 2_2:+54006977 None:intergenic
ATAGCTTGGAGGACCCTCAT+GGG 0.605201 2_2:-54007482 Msa0258030:intron
AATATCAGCACAAGAGACAA+TGG 0.615843 2_2:+54008548 None:intergenic
CCAAGTGGTACTACCCATGA+GGG 0.635598 2_2:+54007469 None:intergenic
ATAGGTCAGAAGCTGGTGAA+GGG 0.643236 2_2:+54007398 None:intergenic
CTATGGTGTGTGCACCAGAA+AGG 0.646942 2_2:+54007320 None:intergenic
TCCAAGTGGTACTACCCATG+AGG 0.651245 2_2:+54007468 None:intergenic
AGTGTGGATAGGTCAGAAGC+TGG 0.662213 2_2:+54007391 None:intergenic
TTGGATAATTGATTAAGCAG+GGG 0.667518 2_2:-54006868 Msa0258030:three_prime_UTR
GTAGAATTAGTCCTCTCACA+GGG 0.677991 2_2:-54006988 Msa0258030:CDS
TCCTCTCACAGGGACTAATG+GGG 0.683490 2_2:-54006978 Msa0258030:CDS
ACTGGAGAGACAGAATCAAG+AGG 0.693800 2_2:+54007178 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTTTTTGTTTTATTATT+AGG - chr2_2:54006825-54006844 Msa0258030:three_prime_UTR 10.0%
!!! TATACTCTTTTTAATTTTTA+GGG + chr2_2:54006903-54006922 None:intergenic 10.0%
!!! ATATACTCTTTTTAATTTTT+AGG + chr2_2:54006904-54006923 None:intergenic 10.0%
!!! AGATATTTTTATATTGAATA+TGG - chr2_2:54007181-54007200 Msa0258030:CDS 10.0%
!! TTATTCTACATTAAATAAAA+TGG - chr2_2:54007742-54007761 Msa0258030:intron 10.0%
!! TTATGTTTAATTATAAAGAA+TGG + chr2_2:54007844-54007863 None:intergenic 10.0%
!! GAATTAAATTTAACATATTA+AGG + chr2_2:54008937-54008956 None:intergenic 10.0%
!!! TTTTATATTCATTATTGTTA+TGG - chr2_2:54009164-54009183 Msa0258030:intron 10.0%
!! AGATTAATCAATATATATAG+AGG + chr2_2:54007092-54007111 None:intergenic 15.0%
!!! TGTAACAAATAATTTGTTTA+AGG + chr2_2:54007210-54007229 None:intergenic 15.0%
!! TTGTTCTATTGTTAATTTAT+TGG - chr2_2:54007557-54007576 Msa0258030:intron 15.0%
!! TAAAAATAAAAACAGTTTAC+AGG - chr2_2:54007973-54007992 Msa0258030:intron 15.0%
!!! TATTTCTTTGTTTATTTTGT+AGG - chr2_2:54008039-54008058 Msa0258030:intron 15.0%
!!! ATTTCTTTGTTTATTTTGTA+GGG - chr2_2:54008040-54008059 Msa0258030:intron 15.0%
!! AAATATACATGTCTAATAAA+AGG + chr2_2:54008279-54008298 None:intergenic 15.0%
!! ATATAAATTAATTGAAACCA+TGG + chr2_2:54009245-54009264 None:intergenic 15.0%
!! TTCAATTAATTTATATAGCT+TGG - chr2_2:54009249-54009268 Msa0258030:intron 15.0%
!! AAAGAAAAAGCTACAAATAA+TGG + chr2_2:54006812-54006831 None:intergenic 20.0%
!!! TTTTTTTTTTTTTTCTCGAG+AGG + chr2_2:54007067-54007086 None:intergenic 20.0%
!! AATTAGACTATTTGATTATG+TGG - chr2_2:54007694-54007713 Msa0258030:intron 20.0%
!!! TGAACTATTACATTTGTTTT+TGG - chr2_2:54007807-54007826 Msa0258030:intron 20.0%
!! TTTGTGACAAAAGAAATTAA+AGG - chr2_2:54008300-54008319 Msa0258030:intron 20.0%
!!! TTTTCCTATCATATTGTTTA+TGG - chr2_2:54008427-54008446 Msa0258030:intron 20.0%
!!! TTTTTCTCACATATAATTGA+GGG - chr2_2:54008495-54008514 Msa0258030:intron 20.0%
!! AAATCACTCATTATACTTAA+AGG - chr2_2:54008581-54008600 Msa0258030:CDS 20.0%
!! TATTATGTTTAGTTAGTAGT+TGG - chr2_2:54008687-54008706 Msa0258030:CDS 20.0%
!!! TCTGTGTCTTTTTAATTATT+TGG + chr2_2:54008831-54008850 None:intergenic 20.0%
!! TTTAACATATTAAGGGTTTA+TGG + chr2_2:54008929-54008948 None:intergenic 20.0%
!! ATATAGTTAGGGAAATTTAT+AGG + chr2_2:54009061-54009080 None:intergenic 20.0%
!!! AATTTGATGACATATAGTTA+GGG + chr2_2:54009072-54009091 None:intergenic 20.0%
!!! AAATTTGATGACATATAGTT+AGG + chr2_2:54009073-54009092 None:intergenic 20.0%
!! AATTAATTTATATAGCTTGG+AGG - chr2_2:54009252-54009271 Msa0258030:intron 20.0%
!! ACTAAAATGTTTCAAAACAA+AGG - chr2_2:54009378-54009397 Msa0258030:CDS 20.0%
!! TGAATTAATTGATCATGAAT+TGG - chr2_2:54009814-54009833 Msa0258030:intron 20.0%
!! CAATTGAATAAATATTGTGT+TGG - chr2_2:54009849-54009868 Msa0258030:intron 20.0%
! TTATTAGGTAAGTCAACTAA+TGG - chr2_2:54006840-54006859 Msa0258030:three_prime_UTR 25.0%
! TATTAGGTAAGTCAACTAAT+GGG - chr2_2:54006841-54006860 Msa0258030:three_prime_UTR 25.0%
! TGAAATAAAGATGAATACGA+TGG + chr2_2:54006870-54006889 None:intergenic 25.0%
!! TTTTTGTCCATTATCTTAGA+GGG + chr2_2:54007419-54007438 None:intergenic 25.0%
!! ATTTTTGTCCATTATCTTAG+AGG + chr2_2:54007420-54007439 None:intergenic 25.0%
! TCACTTAATTATGAAAACTG+TGG + chr2_2:54007645-54007664 None:intergenic 25.0%
! AATTAAGTGAATTGAGCTTT+AGG - chr2_2:54007655-54007674 Msa0258030:intron 25.0%
! ATTGTAATCATACAATTCTC+TGG - chr2_2:54008373-54008392 Msa0258030:intron 25.0%
! AAAAAGTTAAGAAGAGAAAG+TGG + chr2_2:54008480-54008499 None:intergenic 25.0%
!! CTTTTTCTCACATATAATTG+AGG - chr2_2:54008494-54008513 Msa0258030:intron 25.0%
! AGTCAACCTTATGTTTATTA+AGG - chr2_2:54008652-54008671 Msa0258030:CDS 25.0%
! TGATGTCCTTAATAAACATA+AGG + chr2_2:54008661-54008680 None:intergenic 25.0%
!!! CTAAAGATTTTTTATGCCAT+GGG + chr2_2:54008866-54008885 None:intergenic 25.0%
!!! TCTAAAGATTTTTTATGCCA+TGG + chr2_2:54008867-54008886 None:intergenic 25.0%
! TCATGTTTCACATAGAAATA+AGG + chr2_2:54009031-54009050 None:intergenic 25.0%
! TTTCATTGTATATGCGATTT+CGG + chr2_2:54009473-54009492 None:intergenic 25.0%
!! TTTTGACAACAACTACTATA+GGG - chr2_2:54009593-54009612 Msa0258030:intron 25.0%
! ATTAATTGATCATGAATTGG+AGG - chr2_2:54009817-54009836 Msa0258030:intron 25.0%
! TTAATTGATCATGAATTGGA+GGG - chr2_2:54009818-54009837 Msa0258030:intron 25.0%
!! AAATATTGTGTTGGAGATTT+TGG - chr2_2:54009858-54009877 Msa0258030:intron 25.0%
!! TTTTGGATAATTGATTAAGC+AGG - chr2_2:54009875-54009894 Msa0258030:intron 25.0%
! TTTGGATAATTGATTAAGCA+GGG - chr2_2:54009876-54009895 Msa0258030:intron 25.0%
! GTCTTACTTAAATCAATGAA+TGG - chr2_2:54009943-54009962 Msa0258030:intron 25.0%
! AGGAGACATCTTTGAAAATT+TGG - chr2_2:54006937-54006956 Msa0258030:exon 30.0%
! CATCTTTGAAAATTTGGACA+AGG - chr2_2:54006943-54006962 Msa0258030:exon 30.0%
TGTATATGCCATTATTGTGA+CGG + chr2_2:54007031-54007050 None:intergenic 30.0%
ATTTCCATAACTTCTCTCAT+TGG - chr2_2:54007142-54007161 Msa0258030:CDS 30.0%
!! CAACTTTTTCCTAACTTCTA+TGG - chr2_2:54007269-54007288 Msa0258030:CDS 30.0%
TTATCTCTCACATTCTAACT+AGG - chr2_2:54007504-54007523 Msa0258030:intron 30.0%
!! ACTAGGCTCTATTTTTCATT+TGG - chr2_2:54007521-54007540 Msa0258030:intron 30.0%
!! CTAGGCTCTATTTTTCATTT+GGG - chr2_2:54007522-54007541 Msa0258030:intron 30.0%
!!! TTTATTTTGTAGGGATGTGA+TGG - chr2_2:54008049-54008068 Msa0258030:intron 30.0%
!! ATGTGATGGATCAATCTTAT+TGG - chr2_2:54008063-54008082 Msa0258030:intron 30.0%
TAACTCTTGTCGTTGTATAT+GGG - chr2_2:54008527-54008546 Msa0258030:CDS 30.0%
TGAATCTCAATAATTCACCA+TGG - chr2_2:54009225-54009244 Msa0258030:intron 30.0%
!! TTGAAACATTTTAGTGAGTG+TGG + chr2_2:54009373-54009392 None:intergenic 30.0%
!! AGGACAATTTGCTTTTCTTA+AGG + chr2_2:54009520-54009539 None:intergenic 30.0%
TAGTTGTTGTCAAAAGTAAC+TGG + chr2_2:54009588-54009607 None:intergenic 30.0%
! CTTTTGACAACAACTACTAT+AGG - chr2_2:54009592-54009611 Msa0258030:intron 30.0%
TTCTCAAGTTTCTTTGGTTA+GGG - chr2_2:54009674-54009693 Msa0258030:intron 30.0%
TTGGATAATTGATTAAGCAG+GGG - chr2_2:54009877-54009896 Msa0258030:intron 30.0%
!!! GGATAATGCTTGTTTTATGT+TGG - chr2_2:54009964-54009983 Msa0258030:intron 30.0%
! TTTTTCTCGAGAGGATATTG+TGG + chr2_2:54007058-54007077 None:intergenic 35.0%
AGAGAAGTTATGGAAATGTG+AGG + chr2_2:54007139-54007158 None:intergenic 35.0%
GTTAGGAAAAAGTTGTGCAT+TGG + chr2_2:54007264-54007283 None:intergenic 35.0%
CAAGTTCTTCCATAGAAGTT+AGG + chr2_2:54007281-54007300 None:intergenic 35.0%
ATCAATAATGAAGCCCGAAT+TGG - chr2_2:54007344-54007363 Msa0258030:CDS 35.0%
!! AAGTATAGAAGCACCAATTC+GGG + chr2_2:54007360-54007379 None:intergenic 35.0%
!! GAAGTATAGAAGCACCAATT+CGG + chr2_2:54007361-54007380 None:intergenic 35.0%
!! TGTAAGTCCCTCTAAGATAA+TGG - chr2_2:54007409-54007428 Msa0258030:CDS 35.0%
ACCTAACAAAAACTCAGCTA+GGG - chr2_2:54008123-54008142 Msa0258030:intron 35.0%
!!! AGCTTCAACACTGGTTTTAA+TGG + chr2_2:54008167-54008186 None:intergenic 35.0%
AATATCAGCACAAGAGACAA+TGG + chr2_2:54008200-54008219 None:intergenic 35.0%
CGTGCCATAAACAATATGAT+AGG + chr2_2:54008434-54008453 None:intergenic 35.0%
AAGTTAAGAAGAGAAAGTGG+CGG + chr2_2:54008477-54008496 None:intergenic 35.0%
CTAACTCTTGTCGTTGTATA+TGG - chr2_2:54008526-54008545 Msa0258030:CDS 35.0%
AACTCTTGTCGTTGTATATG+GGG - chr2_2:54008528-54008547 Msa0258030:CDS 35.0%
CAACAAAAAATTCGAGAGCA+CGG - chr2_2:54008611-54008630 Msa0258030:CDS 35.0%
AAAAATCTTTAGACCAGCTC+TGG - chr2_2:54008874-54008893 Msa0258030:intron 35.0%
AAAATCTTTAGACCAGCTCT+GGG - chr2_2:54008875-54008894 Msa0258030:intron 35.0%
!! ACATTTTAGTGAGTGTGGAT+AGG + chr2_2:54009368-54009387 None:intergenic 35.0%
GGAAAAATTGACATTCTGCT+TGG + chr2_2:54009452-54009471 None:intergenic 35.0%
TGCAAAGTTTGTGTCAATGT+TGG + chr2_2:54009496-54009515 None:intergenic 35.0%
AAAGCAAATTGTCCTCTTTC+TGG - chr2_2:54009525-54009544 Msa0258030:CDS 35.0%
AGGGATCTTGTTGCTAATAA+AGG - chr2_2:54009612-54009631 Msa0258030:intron 35.0%
! TCTGATCAAGCTCTTTTCAA+TGG - chr2_2:54009645-54009664 Msa0258030:intron 35.0%
!! TGTTGGTTCTCAAGTTTCTT+TGG - chr2_2:54009668-54009687 Msa0258030:intron 35.0%
GTTCTCAAGTTTCTTTGGTT+AGG - chr2_2:54009673-54009692 Msa0258030:intron 35.0%
GTTAGGGCTTATAGTAGAAA+TGG - chr2_2:54009690-54009709 Msa0258030:intron 35.0%
GGGAAATTAGAAAGAATTGC+AGG - chr2_2:54009787-54009806 Msa0258030:intron 35.0%
TGGATAATTGATTAAGCAGG+GGG - chr2_2:54009878-54009897 Msa0258030:intron 35.0%
TGCACTTGTTTATCCAAACA+GGG + chr2_2:54010034-54010053 None:intergenic 35.0%
ATGCACTTGTTTATCCAAAC+AGG + chr2_2:54010035-54010054 None:intergenic 35.0%
ACATGTGCTAGAGTGGAAAA+AGG + chr2_2:54006718-54006737 None:intergenic 40.0%
GACATATACATGTGCTAGAG+TGG + chr2_2:54006725-54006744 None:intergenic 40.0%
AGTATGAAGTAGTCGTTGCT+GGG + chr2_2:54006750-54006769 None:intergenic 40.0%
AAGTATGAAGTAGTCGTTGC+TGG + chr2_2:54006751-54006770 None:intergenic 40.0%
AGTATATACAAAGCGCGTAG+AGG - chr2_2:54006917-54006936 Msa0258030:three_prime_UTR 40.0%
GCTACCAATGAGAGAAGTTA+TGG + chr2_2:54007149-54007168 None:intergenic 40.0%
! ATTTTTCTCACCGGTAAAGG+TGG + chr2_2:54008098-54008117 None:intergenic 40.0%
! AGCTGAGTTTTTGTTAGGTG+CGG + chr2_2:54008122-54008141 None:intergenic 40.0%
CACCTAACAAAAACTCAGCT+AGG - chr2_2:54008122-54008141 Msa0258030:intron 40.0%
CCTAACAAAAACTCAGCTAG+GGG - chr2_2:54008124-54008143 Msa0258030:intron 40.0%
TTTGCAAGAAGCTTCAACAC+TGG + chr2_2:54008176-54008195 None:intergenic 40.0%
AACTAGAGATGGAATAGCAC+TGG - chr2_2:54008231-54008250 Msa0258030:intron 40.0%
TTCTCTGGTCATTCTCAAGA+TGG - chr2_2:54008388-54008407 Msa0258030:intron 40.0%
CAGATATATTGTTACGCCCA+TGG - chr2_2:54008847-54008866 Msa0258030:intron 40.0%
! TTCTGGTGGTGACACAAATT+TGG - chr2_2:54009542-54009561 Msa0258030:CDS 40.0%
! CAAGCTCTTTTCAATGGTGT+TGG - chr2_2:54009651-54009670 Msa0258030:intron 40.0%
!! AAGAGACTTTGCTGTTGCTA+TGG - chr2_2:54009725-54009744 Msa0258030:intron 40.0%
AGTAGAATTAGTCCTCTCAC+AGG - chr2_2:54009756-54009775 Msa0258030:intron 40.0%
GTAGAATTAGTCCTCTCACA+GGG - chr2_2:54009757-54009776 Msa0258030:intron 40.0%
TTCTCAATTGTGACCCTGTT+TGG - chr2_2:54010018-54010037 Msa0258030:intron 40.0%
TGCATGCACCGTCACAATAA+TGG - chr2_2:54007020-54007039 Msa0258030:CDS 45.0%
GCACTATGGTTTGAAGGCTA+GGG + chr2_2:54007304-54007323 None:intergenic 45.0%
GATGACACTTCCACCTTTAC+CGG - chr2_2:54008085-54008104 Msa0258030:intron 45.0%
! GGCATTTTTCTCACCGGTAA+AGG + chr2_2:54008101-54008120 None:intergenic 45.0%
! CCCCTAGCTGAGTTTTTGTT+AGG + chr2_2:54008127-54008146 None:intergenic 45.0%
CTAGCACTTGCAACTAGAGA+TGG - chr2_2:54008220-54008239 Msa0258030:intron 45.0%
TTTGATACTCAACCCAGAGC+TGG + chr2_2:54008890-54008909 None:intergenic 45.0%
! GCTCTGGGTTGAGTATCAAA+TGG - chr2_2:54008890-54008909 Msa0258030:intron 45.0%
CTTGCATCTCTTCTTCCAAG+TGG + chr2_2:54009294-54009313 None:intergenic 45.0%
ATAGGTCAGAAGCTGGTGAA+GGG + chr2_2:54009350-54009369 None:intergenic 45.0%
AGAGACCTTACAGTCCTTTC+TGG - chr2_2:54009411-54009430 Msa0258030:CDS 45.0%
TTGACATTCTGCTTGGCCTA+TGG + chr2_2:54009445-54009464 None:intergenic 45.0%
GCAAATTGTCCTCTTTCTGG+TGG - chr2_2:54009528-54009547 Msa0258030:CDS 45.0%
TTTGTGTCACCACCAGAAAG+AGG + chr2_2:54009540-54009559 None:intergenic 45.0%
ACTGGAGAGACAGAATCAAG+AGG + chr2_2:54009570-54009589 None:intergenic 45.0%
!!! ATATATTTATCTTTTTTTTA+AGG + chr2_2:54007899-54007918 None:intergenic 5.0%
!! AATTAAATTTAACATATTAA+GGG + chr2_2:54008936-54008955 None:intergenic 5.0%
GTGACGGTGCATGCATAGTT+AGG + chr2_2:54007015-54007034 None:intergenic 50.0%
CGCACTATGGTTTGAAGGCT+AGG + chr2_2:54007305-54007324 None:intergenic 50.0%
CCTTCAAACCATAGTGCGCA+GGG - chr2_2:54007307-54007326 Msa0258030:CDS 50.0%
GATCATTTCCCTGCGCACTA+TGG + chr2_2:54007318-54007337 None:intergenic 50.0%
! AGGTGCGGCATTTTTCTCAC+CGG + chr2_2:54008107-54008126 None:intergenic 50.0%
!! AGAAAGTGGCGGACATGGTT+TGG + chr2_2:54008466-54008485 None:intergenic 50.0%
!! AGAAGAGAAAGTGGCGGACA+TGG + chr2_2:54008471-54008490 None:intergenic 50.0%
TATAGCTTGGAGGACCCTCA+TGG - chr2_2:54009262-54009281 Msa0258030:intron 50.0%
ATAGCTTGGAGGACCCTCAT+GGG - chr2_2:54009263-54009282 Msa0258030:intron 50.0%
CCAAGTGGTACTACCCATGA+GGG + chr2_2:54009279-54009298 None:intergenic 50.0%
TCCAAGTGGTACTACCCATG+AGG + chr2_2:54009280-54009299 None:intergenic 50.0%
CAGAAGCTGGTGAAGGGATT+TGG + chr2_2:54009344-54009363 None:intergenic 50.0%
GATAGGTCAGAAGCTGGTGA+AGG + chr2_2:54009351-54009370 None:intergenic 50.0%
AGTGTGGATAGGTCAGAAGC+TGG + chr2_2:54009357-54009376 None:intergenic 50.0%
GTGCACCAGAAAGGACTGTA+AGG + chr2_2:54009419-54009438 None:intergenic 50.0%
CTATGGTGTGTGCACCAGAA+AGG + chr2_2:54009428-54009447 None:intergenic 50.0%
! CTTTCTGGTGCACACACCAT+AGG - chr2_2:54009426-54009445 Msa0258030:CDS 50.0%
AGTCCTCTCACAGGGACTAA+TGG - chr2_2:54009765-54009784 Msa0258030:intron 50.0%
GTCCTCTCACAGGGACTAAT+GGG - chr2_2:54009766-54009785 Msa0258030:intron 50.0%
TCCTCTCACAGGGACTAATG+GGG - chr2_2:54009767-54009786 Msa0258030:intron 50.0%
GCAGGGGGTCTAAGTCATAA+AGG - chr2_2:54009893-54009912 Msa0258030:intron 50.0%
GCCTTCAAACCATAGTGCGC+AGG - chr2_2:54007306-54007325 Msa0258030:CDS 55.0%
CCCTGCGCACTATGGTTTGA+AGG + chr2_2:54007310-54007329 None:intergenic 55.0%
CCCTCATGGGTAGTACCACT+TGG - chr2_2:54009276-54009295 Msa0258030:intron 55.0%
TCCCCATTAGTCCCTGTGAG+AGG + chr2_2:54009771-54009790 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 54006712 54010055 54006712 ID=Msa0258030;Name=Msa0258030
chr2_2 mRNA 54006712 54010055 54006712 ID=Msa0258030-mRNA-1;Parent=Msa0258030;Name=Msa0258030-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.25|0.2|0.8|0.5|0.4|5|234|340
chr2_2 exon 54006712 54007500 54006712 ID=Msa0258030-mRNA-1:exon:16284;Parent=Msa0258030-mRNA-1
chr2_2 exon 54008515 54008706 54008515 ID=Msa0258030-mRNA-1:exon:16283;Parent=Msa0258030-mRNA-1
chr2_2 exon 54009358 54009584 54009358 ID=Msa0258030-mRNA-1:exon:16282;Parent=Msa0258030-mRNA-1
chr2_2 exon 54009921 54009945 54009921 ID=Msa0258030-mRNA-1:exon:16281;Parent=Msa0258030-mRNA-1
chr2_2 exon 54010032 54010055 54010032 ID=Msa0258030-mRNA-1:exon:16280;Parent=Msa0258030-mRNA-1
chr2_2 CDS 54010032 54010055 54010032 ID=Msa0258030-mRNA-1:cds;Parent=Msa0258030-mRNA-1
chr2_2 CDS 54009921 54009945 54009921 ID=Msa0258030-mRNA-1:cds;Parent=Msa0258030-mRNA-1
chr2_2 CDS 54009358 54009584 54009358 ID=Msa0258030-mRNA-1:cds;Parent=Msa0258030-mRNA-1
chr2_2 CDS 54008515 54008706 54008515 ID=Msa0258030-mRNA-1:cds;Parent=Msa0258030-mRNA-1
chr2_2 CDS 54006946 54007500 54006946 ID=Msa0258030-mRNA-1:cds;Parent=Msa0258030-mRNA-1
chr2_2 three_prime_UTR 54006712 54006945 54006712 ID=Msa0258030-mRNA-1:three_prime_utr;Parent=Msa0258030-mRNA-1
Gene Sequence

>Msa0258030

ATGCCTTTTTCCACTCTAGCACATCTTTTTCTTTTTGTTTTATTATTAGATATTTTTATATTGAATATGGTGACCTTAAACAAATTATTTGTTACACTCTCTATTCTTTCTATCTTTGCTTGTTCTACCAATGCACAACTTTTTCCTAACTTCTATGGAAGAACTTGCCCTAGCCTTCAAACCATAGTGCGCAGGGAAATGATCAAAGCTATCAATAATGAAGCCCGAATTGGTGCTTCTATACTTCGTTTGTTCTTTCATGACTGCTTTGTAAATGGATGTGATGGATCAATCTTATTGGATGACACTTCCACCTTTACCGGTGAGAAAAATGCCGCACCTAACAAAAACTCAGCTAGGGGTTTTGAAGTGATTGATACCATTAAAACCAGTGTTGAAGCTTCTTGCAAAGCCATTGTCTCTTGTGCTGATATTCTAGCACTTGCAACTAGAGATGGAATAGCACTGCTTGGAGGACCCTCATGGGTAGTACCACTTGGAAGAAGAGATGCAAGAACAGCAAGTCAAAGTGCAGCAAACAGCCAAATCCCTTCACCAGCTTCTGACCTATCCACACTCACTAAAATGTTTCAAAACAAAGGTCTAACATTAAGAGACCTTACAGTCCTTTCTGGTGCACACACCATAGGCCAAGCAGAATGTCAATTTTTCCGAAATCGCATATACAATGAAACCAACATTGACACAAACTTTGCAACCTTAAGAAAAGCAAATTGTCCTCTTTCTGGTGGTGACACAAATTTGGCACCTCTTGATTCTGTCTCTCCAGTTACTTTTGACAACAACTACTATAGGGATCTTGTTGCTAATAAAGGACTTCTTCATTCTGATCAAGCTCTTTTCAATGGTGTTGGTTCTCAAGTTTCTTTGGTTAGGGCTTATAGTAGAAATGGTTTTGCTTTTAGAAGAGACTTTGCTGTTGCTATGGTGAAGATGAGTAGAATTAGTCCTCTCACAGGGACTAATGGGGAAATTAGAAAGAATTGCAGGCTTGTGAATTAA
Protein sequence

>Msa0258030

MPFSTLAHLFLFVLLLDIFILNMVTLNKLFVTLSILSIFACSTNAQLFPNFYGRTCPSLQTIVRREMIKAINNEARIGASILRLFFHDCFVNGCDGSILLDDTSTFTGEKNAAPNKNSARGFEVIDTIKTSVEASCKAIVSCADILALATRDGIALLGGPSWVVPLGRRDARTASQSAANSQIPSPASDLSTLTKMFQNKGLTLRDLTVLSGAHTIGQAECQFFRNRIYNETNIDTNFATLRKANCPLSGGDTNLAPLDSVSPVTFDNNYYRDLVANKGLLHSDQALFNGVGSQVSLVRAYSRNGFAFRRDFAVAMVKMSRISPLTGTNGEIRKNCRLVN*