AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1376930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376930 MtrunA17_Chr8g0381681 96.657 329 7 1 1 329 1 325 0.0 645
Msa1376930 MtrunA17_Chr3g0123621 62.349 332 116 6 3 330 2 328 1.22e-136 390
Msa1376930 MtrunA17_Chr3g0132501 38.699 292 168 5 9 292 10 298 4.00e-57 188
Msa1376930 MtrunA17_Chr3g0137621 30.921 152 100 3 1 149 1 150 1.79e-15 77.4
Msa1376930 MtrunA17_Chr4g0071851 25.097 259 177 7 27 274 30 282 2.95e-15 76.6
Msa1376930 MtrunA17_Chr4g0064391 28.061 196 124 6 2 190 5 190 2.20e-13 70.9
Msa1376930 MtrunA17_Chr2g0298681 27.746 173 113 4 27 190 30 199 2.65e-13 70.5
Msa1376930 MtrunA17_Chr8g0336601 30.065 153 101 3 1 149 1 151 2.67e-13 70.5
Msa1376930 MtrunA17_Chr8g0376161 33.333 129 81 4 31 157 34 159 3.38e-13 70.1
Msa1376930 MtrunA17_Chr2g0278681 29.870 154 100 4 1 149 1 151 6.74e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376930 AT4G40080.1 48.864 352 154 9 1 329 1 349 5.24e-98 294
Msa1376930 AT5G10410.1 34.432 273 151 10 7 262 6 267 8.27e-32 122
Msa1376930 AT5G65370.1 29.181 281 168 9 1 262 1 269 8.39e-24 99.4
Msa1376930 AT5G57200.1 24.125 257 180 6 27 274 30 280 8.20e-14 72.8
Msa1376930 AT4G32285.1 29.530 149 100 3 4 149 3 149 1.29e-13 72.0
Msa1376930 AT4G32285.2 29.530 149 100 3 4 149 3 149 1.29e-13 72.0
Msa1376930 AT2G25430.1 29.730 148 99 3 5 149 4 149 1.45e-13 72.0
Msa1376930 AT4G25940.1 30.247 162 106 4 10 167 11 169 2.89e-13 70.9
Msa1376930 AT4G02650.1 30.345 145 94 3 10 149 10 152 3.10e-13 70.9
Msa1376930 AT2G01600.1 33.333 129 81 4 31 157 34 159 5.55e-13 70.1
Msa1376930 AT1G03050.1 30.345 145 94 3 10 149 10 152 3.57e-12 67.8
Msa1376930 AT1G14910.1 30.233 129 85 4 31 157 34 159 6.03e-11 63.9

Find 100 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTGAAGTGAATGAGTTTA+AGG 0.146193 tig0019839:+141067 Msa1376930:CDS
AGAGAGGGTGGTGATGATTT+TGG 0.182988 tig0019839:+141163 Msa1376930:CDS
TGTCTTTGATTATGTTTATT+AGG 0.192374 tig0019839:-140404 None:intergenic
CTTTGTACTTCACGAATATT+AGG 0.195912 tig0019839:+140825 Msa1376930:CDS
AGGTTAGGGTGTTTGGAATT+TGG 0.217369 tig0019839:+141092 Msa1376930:CDS
CATGCGTGGTGGCGCGTAAA+AGG 0.245276 tig0019839:-140476 None:intergenic
TAAGGAGAGGTTAGGGTGTT+TGG 0.259878 tig0019839:+141085 Msa1376930:CDS
ATATTAGGTTTCTTCTTTCT+TGG 0.260154 tig0019839:+140840 Msa1376930:CDS
GTTGAAGGAGTTTGATTCTT+TGG 0.272817 tig0019839:+140917 Msa1376930:CDS
TTGTTCATGTTCACTTGATC+TGG 0.299217 tig0019839:-140969 None:intergenic
GGTGGATGAGATAGTGAATT+TGG 0.313395 tig0019839:+141007 Msa1376930:CDS
AATGAGTTTAAGGAGAGGTT+AGG 0.335488 tig0019839:+141077 Msa1376930:CDS
GGTTGGAATGGAGGTGTATA+AGG 0.337777 tig0019839:+141232 Msa1376930:CDS
TATTAGGTTTCTTCTTTCTT+GGG 0.348931 tig0019839:+140841 Msa1376930:CDS
TGAATTTGGTTTGTGAAGAT+TGG 0.373475 tig0019839:+141021 Msa1376930:CDS
TTCGTGGGAACTTTCTTGTT+GGG 0.385009 tig0019839:+140770 Msa1376930:CDS
GAGAGCAACGGCGGCGTTGT+TGG 0.403727 tig0019839:-140613 None:intergenic
CTTCGTGGGAACTTTCTTGT+TGG 0.404521 tig0019839:+140769 Msa1376930:CDS
GGAAAAGGGTAGGGTGCATA+AGG 0.410677 tig0019839:+141253 Msa1376930:CDS
TTCTTTGGTGACACTGGTTG+AGG 0.421524 tig0019839:+140932 Msa1376930:CDS
TCAGTTCTCGTGATTCCCTT+TGG 0.432756 tig0019839:+141327 Msa1376930:CDS
ATTTGGAGAAGCTGTTGAAT+TGG 0.433804 tig0019839:+141109 Msa1376930:CDS
GAATTTGGTTTGTGAAGATT+GGG 0.435014 tig0019839:+141022 Msa1376930:CDS
AACTTTCTTGTTGGGTACGC+TGG 0.446346 tig0019839:+140778 Msa1376930:CDS
TACAAACTGTGGTTTGTTGA+AGG 0.449445 tig0019839:+140902 Msa1376930:CDS
ACAGCAAGGGTTGTGGGATT+CGG 0.450595 tig0019839:+141190 Msa1376930:CDS
GGAGTCACAGCAAGGGTTGT+GGG 0.451429 tig0019839:+141184 Msa1376930:CDS
CCCTTTGGTTTCCCTCTGGA+AGG 0.452637 tig0019839:+141342 Msa1376930:CDS
TTATCTGTTTACCCTTCAAC+CGG 0.456568 tig0019839:+140696 Msa1376930:CDS
AATGGAGGTGTATAAGGAAA+AGG 0.456653 tig0019839:+141238 Msa1376930:CDS
GGTGAGAGAGGTGAAGGATA+AGG 0.466786 tig0019839:+141211 Msa1376930:CDS
TGCGCGTGAACCGTCGGTGG+AGG 0.467786 tig0019839:-140544 None:intergenic
AAAGGGTAGGGTGCATAAGG+AGG 0.471808 tig0019839:+141256 Msa1376930:CDS
CAAGAAAGTTCCCACGAAGT+TGG 0.471951 tig0019839:-140765 None:intergenic
GATTCCCTTTGGTTTCCCTC+TGG 0.472352 tig0019839:+141338 Msa1376930:CDS
ATAAGGAGGGAAGAAAGTTA+AGG 0.477466 tig0019839:+141270 Msa1376930:CDS
ATGAGTTTAAGGAGAGGTTA+GGG 0.479103 tig0019839:+141078 Msa1376930:CDS
AGAGAGGTGAAGGATAAGGT+TGG 0.486121 tig0019839:+141215 Msa1376930:CDS
CTCCTTCTTAGAACTCCTCA+TGG 0.486237 tig0019839:+140575 Msa1376930:CDS
TGGAGTCACAGCAAGGGTTG+TGG 0.486285 tig0019839:+141183 Msa1376930:CDS
ATGCGTGGTGGCGCGTAAAA+GGG 0.490324 tig0019839:-140475 None:intergenic
AAGGGTAGGGTGCATAAGGA+GGG 0.491561 tig0019839:+141257 Msa1376930:CDS
TCTTTGGTGACACTGGTTGA+GGG 0.496012 tig0019839:+140933 Msa1376930:CDS
GGTTTGTTGTTTGAAGAGGT+TGG 0.498420 tig0019839:+141130 Msa1376930:CDS
GCGTAAAAGGGAGAGGGTGG+TGG 0.501291 tig0019839:-140463 None:intergenic
TAGTTTCTACCACCGGTTGA+AGG 0.501899 tig0019839:-140708 None:intergenic
ATGGAGGTGTATAAGGAAAA+GGG 0.504494 tig0019839:+141239 Msa1376930:CDS
CTTTGGTGACACTGGTTGAG+GGG 0.505079 tig0019839:+140934 Msa1376930:CDS
GGTGAAGGATAAGGTTGGAA+TGG 0.506608 tig0019839:+141220 Msa1376930:CDS
CGTGGAGATATGTTTGTGGG+TGG 0.510992 tig0019839:-140514 None:intergenic
CTTGGGAAATCTTTGTGTGA+CGG 0.516792 tig0019839:+140858 Msa1376930:CDS
TTTGTGGGTGGGAGGAGTGA+AGG 0.525799 tig0019839:-140502 None:intergenic
AATTGGTTTGTTGTTTGAAG+AGG 0.527047 tig0019839:+141126 Msa1376930:CDS
GAGTTCTAAGAAGGAGGAAG+CGG 0.537195 tig0019839:-140568 None:intergenic
GTTAAGATAGTTTCTACCAC+CGG 0.540411 tig0019839:-140715 None:intergenic
GTTTGATTCTTTGGTGACAC+TGG 0.541118 tig0019839:+140926 Msa1376930:CDS
ACGCTCCTCTCCTCCACCGA+CGG 0.543777 tig0019839:+140534 Msa1376930:CDS
GAAGGATAAGGTTGGAATGG+AGG 0.543884 tig0019839:+141223 Msa1376930:CDS
TGGTGGCGCGTAAAAGGGAG+AGG 0.552428 tig0019839:-140470 None:intergenic
GTCCATGAGGAGTTCTAAGA+AGG 0.553775 tig0019839:-140577 None:intergenic
GGATTCGGTGAGAGAGGTGA+AGG 0.555628 tig0019839:+141205 Msa1376930:CDS
GGTTGGAGGAGTGTAAAGAG+AGG 0.557650 tig0019839:+141147 Msa1376930:CDS
CTTGAAGTATGAAGCTTCCA+TGG 0.558623 tig0019839:-140668 None:intergenic
GTGGAGATATGTTTGTGGGT+GGG 0.558835 tig0019839:-140513 None:intergenic
GGAGCGTGGAGATATGTTTG+TGG 0.559172 tig0019839:-140518 None:intergenic
AGTTTCTACCACCGGTTGAA+GGG 0.559859 tig0019839:-140707 None:intergenic
GTTGTGGGATTCGGTGAGAG+AGG 0.560768 tig0019839:+141199 Msa1376930:CDS
GGAGGAGTGTAAAGAGAGGG+TGG 0.560791 tig0019839:+141151 Msa1376930:CDS
AGCGGTTGCGCGTGAACCGT+CGG 0.562609 tig0019839:-140550 None:intergenic
TAAGGTTTAGTGAGTCTGAT+CGG 0.565323 tig0019839:+141288 Msa1376930:CDS
GTTGGAGGAGTGTAAAGAGA+GGG 0.565591 tig0019839:+141148 Msa1376930:CDS
GAGCGTGGAGATATGTTTGT+GGG 0.568041 tig0019839:-140517 None:intergenic
ATAATACAAATCCAACTTCG+TGG 0.571622 tig0019839:+140754 Msa1376930:CDS
TTGTTGTTTGAAGAGGTTGG+AGG 0.572648 tig0019839:+141133 Msa1376930:CDS
CCTTCCAGAGGGAAACCAAA+GGG 0.573156 tig0019839:-141342 None:intergenic
GAGATATGTTTGTGGGTGGG+AGG 0.573647 tig0019839:-140510 None:intergenic
TAATACAAATCCAACTTCGT+GGG 0.573656 tig0019839:+140755 Msa1376930:CDS
CAAGAACAAGAACAAGTTGG+TGG 0.583931 tig0019839:+140989 Msa1376930:CDS
GAACAAGAACAAGAACAAGT+TGG 0.588041 tig0019839:+140986 Msa1376930:CDS
GGCGCGTAAAAGGGAGAGGG+TGG 0.589270 tig0019839:-140466 None:intergenic
GGTGTATAAGGAAAAGGGTA+GGG 0.591904 tig0019839:+141244 Msa1376930:CDS
AGGTGTATAAGGAAAAGGGT+AGG 0.594328 tig0019839:+141243 Msa1376930:CDS
GTTCATCATATCATCAGCCA+TGG 0.595539 tig0019839:+140651 Msa1376930:CDS
GTCGGTGGAGGAGAGGAGCG+TGG 0.605829 tig0019839:-140532 None:intergenic
CATGAGGAGTTCTAAGAAGG+AGG 0.607142 tig0019839:-140574 None:intergenic
GTGAACCGTCGGTGGAGGAG+AGG 0.607639 tig0019839:-140539 None:intergenic
TTTGGTTTGTGAAGATTGGG+TGG 0.619906 tig0019839:+141025 Msa1376930:CDS
AAGTGAATGAGTTTAAGGAG+AGG 0.627174 tig0019839:+141072 Msa1376930:CDS
CTTTACAATAACCTTCCAGA+GGG 0.627666 tig0019839:-141353 None:intergenic
GTTTCTTGTCTTACAAACTG+TGG 0.632756 tig0019839:+140891 Msa1376930:CDS
TATTATGTCGAAAATTCGAG+AGG 0.648120 tig0019839:-140737 None:intergenic
GAGAGACTTGAGAGCAACGG+CGG 0.649205 tig0019839:-140622 None:intergenic
TCTGTTTACCCTTCAACCGG+TGG 0.651507 tig0019839:+140699 Msa1376930:CDS
ACCTTCCAGAGGGAAACCAA+AGG 0.651596 tig0019839:-141343 None:intergenic
GGTGGCGCGTAAAAGGGAGA+GGG 0.653956 tig0019839:-140469 None:intergenic
AGTGAAGGAGTCATGCGTGG+TGG 0.667894 tig0019839:-140487 None:intergenic
TTGGGTGGTGATAGAAACTG+TGG 0.673066 tig0019839:+141040 Msa1376930:CDS
GATGAGAGACTTGAGAGCAA+CGG 0.674885 tig0019839:-140625 None:intergenic
ACTTTACAATAACCTTCCAG+AGG 0.687480 tig0019839:-141354 None:intergenic
AGGAGTGAAGGAGTCATGCG+TGG 0.688189 tig0019839:-140490 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTCTTTGATTATGTTTATT+AGG - tig0019839:140407-140426 None:intergenic 20.0%
!! TGTCTTTGATTATGTTTATT+AGG - tig0019839:140407-140426 None:intergenic 20.0%
! ATATTAGGTTTCTTCTTTCT+TGG + tig0019839:140840-140859 Msa1376930:CDS 25.0%
! TATTAGGTTTCTTCTTTCTT+GGG + tig0019839:140841-140860 Msa1376930:CDS 25.0%
! ATATTAGGTTTCTTCTTTCT+TGG + tig0019839:140840-140859 Msa1376930:CDS 25.0%
! TATTAGGTTTCTTCTTTCTT+GGG + tig0019839:140841-140860 Msa1376930:CDS 25.0%
TATTATGTCGAAAATTCGAG+AGG - tig0019839:140740-140759 None:intergenic 30.0%
ATAATACAAATCCAACTTCG+TGG + tig0019839:140754-140773 Msa1376930:CDS 30.0%
TAATACAAATCCAACTTCGT+GGG + tig0019839:140755-140774 Msa1376930:CDS 30.0%
CTTTGTACTTCACGAATATT+AGG + tig0019839:140825-140844 Msa1376930:CDS 30.0%
!! TGAATTTGGTTTGTGAAGAT+TGG + tig0019839:141021-141040 Msa1376930:CDS 30.0%
!! GAATTTGGTTTGTGAAGATT+GGG + tig0019839:141022-141041 Msa1376930:CDS 30.0%
AGTTGAAGTGAATGAGTTTA+AGG + tig0019839:141067-141086 Msa1376930:CDS 30.0%
!! AATTGGTTTGTTGTTTGAAG+AGG + tig0019839:141126-141145 Msa1376930:CDS 30.0%
TATTATGTCGAAAATTCGAG+AGG - tig0019839:140740-140759 None:intergenic 30.0%
ATAATACAAATCCAACTTCG+TGG + tig0019839:140754-140773 Msa1376930:CDS 30.0%
TAATACAAATCCAACTTCGT+GGG + tig0019839:140755-140774 Msa1376930:CDS 30.0%
CTTTGTACTTCACGAATATT+AGG + tig0019839:140825-140844 Msa1376930:CDS 30.0%
!! TGAATTTGGTTTGTGAAGAT+TGG + tig0019839:141021-141040 Msa1376930:CDS 30.0%
!! GAATTTGGTTTGTGAAGATT+GGG + tig0019839:141022-141041 Msa1376930:CDS 30.0%
AGTTGAAGTGAATGAGTTTA+AGG + tig0019839:141067-141086 Msa1376930:CDS 30.0%
!! AATTGGTTTGTTGTTTGAAG+AGG + tig0019839:141126-141145 Msa1376930:CDS 30.0%
TTATCTGTTTACCCTTCAAC+CGG + tig0019839:140696-140715 Msa1376930:CDS 35.0%
GTTAAGATAGTTTCTACCAC+CGG - tig0019839:140718-140737 None:intergenic 35.0%
GTTTCTTGTCTTACAAACTG+TGG + tig0019839:140891-140910 Msa1376930:CDS 35.0%
!! TACAAACTGTGGTTTGTTGA+AGG + tig0019839:140902-140921 Msa1376930:CDS 35.0%
GTTGAAGGAGTTTGATTCTT+TGG + tig0019839:140917-140936 Msa1376930:CDS 35.0%
TTGTTCATGTTCACTTGATC+TGG - tig0019839:140972-140991 None:intergenic 35.0%
GAACAAGAACAAGAACAAGT+TGG + tig0019839:140986-141005 Msa1376930:CDS 35.0%
AAGTGAATGAGTTTAAGGAG+AGG + tig0019839:141072-141091 Msa1376930:CDS 35.0%
AATGAGTTTAAGGAGAGGTT+AGG + tig0019839:141077-141096 Msa1376930:CDS 35.0%
ATGAGTTTAAGGAGAGGTTA+GGG + tig0019839:141078-141097 Msa1376930:CDS 35.0%
ATTTGGAGAAGCTGTTGAAT+TGG + tig0019839:141109-141128 Msa1376930:CDS 35.0%
! AATGGAGGTGTATAAGGAAA+AGG + tig0019839:141238-141257 Msa1376930:CDS 35.0%
! ATGGAGGTGTATAAGGAAAA+GGG + tig0019839:141239-141258 Msa1376930:CDS 35.0%
ATAAGGAGGGAAGAAAGTTA+AGG + tig0019839:141270-141289 Msa1376930:CDS 35.0%
TAAGGTTTAGTGAGTCTGAT+CGG + tig0019839:141288-141307 Msa1376930:CDS 35.0%
TTATCTGTTTACCCTTCAAC+CGG + tig0019839:140696-140715 Msa1376930:CDS 35.0%
GTTAAGATAGTTTCTACCAC+CGG - tig0019839:140718-140737 None:intergenic 35.0%
GTTTCTTGTCTTACAAACTG+TGG + tig0019839:140891-140910 Msa1376930:CDS 35.0%
!! TACAAACTGTGGTTTGTTGA+AGG + tig0019839:140902-140921 Msa1376930:CDS 35.0%
GTTGAAGGAGTTTGATTCTT+TGG + tig0019839:140917-140936 Msa1376930:CDS 35.0%
TTGTTCATGTTCACTTGATC+TGG - tig0019839:140972-140991 None:intergenic 35.0%
GAACAAGAACAAGAACAAGT+TGG + tig0019839:140986-141005 Msa1376930:CDS 35.0%
AAGTGAATGAGTTTAAGGAG+AGG + tig0019839:141072-141091 Msa1376930:CDS 35.0%
AATGAGTTTAAGGAGAGGTT+AGG + tig0019839:141077-141096 Msa1376930:CDS 35.0%
ATGAGTTTAAGGAGAGGTTA+GGG + tig0019839:141078-141097 Msa1376930:CDS 35.0%
ATTTGGAGAAGCTGTTGAAT+TGG + tig0019839:141109-141128 Msa1376930:CDS 35.0%
! AATGGAGGTGTATAAGGAAA+AGG + tig0019839:141238-141257 Msa1376930:CDS 35.0%
! ATGGAGGTGTATAAGGAAAA+GGG + tig0019839:141239-141258 Msa1376930:CDS 35.0%
ATAAGGAGGGAAGAAAGTTA+AGG + tig0019839:141270-141289 Msa1376930:CDS 35.0%
TAAGGTTTAGTGAGTCTGAT+CGG + tig0019839:141288-141307 Msa1376930:CDS 35.0%
!!! CGTTGTTGGTGTTTTGAAGA+CGG - tig0019839:140602-140621 None:intergenic 40.0%
GTTCATCATATCATCAGCCA+TGG + tig0019839:140651-140670 Msa1376930:CDS 40.0%
CTTGAAGTATGAAGCTTCCA+TGG - tig0019839:140671-140690 None:intergenic 40.0%
TTCGTGGGAACTTTCTTGTT+GGG + tig0019839:140770-140789 Msa1376930:CDS 40.0%
CTTGGGAAATCTTTGTGTGA+CGG + tig0019839:140858-140877 Msa1376930:CDS 40.0%
! GTTTGATTCTTTGGTGACAC+TGG + tig0019839:140926-140945 Msa1376930:CDS 40.0%
! CAAGAACAAGAACAAGTTGG+TGG + tig0019839:140989-141008 Msa1376930:CDS 40.0%
GGTGGATGAGATAGTGAATT+TGG + tig0019839:141007-141026 Msa1376930:CDS 40.0%
!! TTTGGTTTGTGAAGATTGGG+TGG + tig0019839:141025-141044 Msa1376930:CDS 40.0%
! AGGTTAGGGTGTTTGGAATT+TGG + tig0019839:141092-141111 Msa1376930:CDS 40.0%
!! GGTTTGTTGTTTGAAGAGGT+TGG + tig0019839:141130-141149 Msa1376930:CDS 40.0%
!! TTGTTGTTTGAAGAGGTTGG+AGG + tig0019839:141133-141152 Msa1376930:CDS 40.0%
!!! ATGATTTTGGAGTCACAGCA+AGG + tig0019839:141176-141195 Msa1376930:CDS 40.0%
!!! TGATTTTGGAGTCACAGCAA+GGG + tig0019839:141177-141196 Msa1376930:CDS 40.0%
AGGTGTATAAGGAAAAGGGT+AGG + tig0019839:141243-141262 Msa1376930:CDS 40.0%
GGTGTATAAGGAAAAGGGTA+GGG + tig0019839:141244-141263 Msa1376930:CDS 40.0%
!!! CGTTGTTGGTGTTTTGAAGA+CGG - tig0019839:140602-140621 None:intergenic 40.0%
GTTCATCATATCATCAGCCA+TGG + tig0019839:140651-140670 Msa1376930:CDS 40.0%
CTTGAAGTATGAAGCTTCCA+TGG - tig0019839:140671-140690 None:intergenic 40.0%
TTCGTGGGAACTTTCTTGTT+GGG + tig0019839:140770-140789 Msa1376930:CDS 40.0%
CTTGGGAAATCTTTGTGTGA+CGG + tig0019839:140858-140877 Msa1376930:CDS 40.0%
! GTTTGATTCTTTGGTGACAC+TGG + tig0019839:140926-140945 Msa1376930:CDS 40.0%
! CAAGAACAAGAACAAGTTGG+TGG + tig0019839:140989-141008 Msa1376930:CDS 40.0%
GGTGGATGAGATAGTGAATT+TGG + tig0019839:141007-141026 Msa1376930:CDS 40.0%
!! TTTGGTTTGTGAAGATTGGG+TGG + tig0019839:141025-141044 Msa1376930:CDS 40.0%
! AGGTTAGGGTGTTTGGAATT+TGG + tig0019839:141092-141111 Msa1376930:CDS 40.0%
!! GGTTTGTTGTTTGAAGAGGT+TGG + tig0019839:141130-141149 Msa1376930:CDS 40.0%
!! TTGTTGTTTGAAGAGGTTGG+AGG + tig0019839:141133-141152 Msa1376930:CDS 40.0%
!!! ATGATTTTGGAGTCACAGCA+AGG + tig0019839:141176-141195 Msa1376930:CDS 40.0%
!!! TGATTTTGGAGTCACAGCAA+GGG + tig0019839:141177-141196 Msa1376930:CDS 40.0%
AGGTGTATAAGGAAAAGGGT+AGG + tig0019839:141243-141262 Msa1376930:CDS 40.0%
GGTGTATAAGGAAAAGGGTA+GGG + tig0019839:141244-141263 Msa1376930:CDS 40.0%
GTGGAGATATGTTTGTGGGT+GGG - tig0019839:140516-140535 None:intergenic 45.0%
GAGCGTGGAGATATGTTTGT+GGG - tig0019839:140520-140539 None:intergenic 45.0%
!! GAGTTCTAAGAAGGAGGAAG+CGG - tig0019839:140571-140590 None:intergenic 45.0%
!! CATGAGGAGTTCTAAGAAGG+AGG - tig0019839:140577-140596 None:intergenic 45.0%
CTCCTTCTTAGAACTCCTCA+TGG + tig0019839:140575-140594 Msa1376930:CDS 45.0%
!! GTCCATGAGGAGTTCTAAGA+AGG - tig0019839:140580-140599 None:intergenic 45.0%
!!! TGTTTTGAAGACGGTCCATG+AGG - tig0019839:140593-140612 None:intergenic 45.0%
GATGAGAGACTTGAGAGCAA+CGG - tig0019839:140628-140647 None:intergenic 45.0%
! AGTTTCTACCACCGGTTGAA+GGG - tig0019839:140710-140729 None:intergenic 45.0%
! TAGTTTCTACCACCGGTTGA+AGG - tig0019839:140711-140730 None:intergenic 45.0%
CAAGAAAGTTCCCACGAAGT+TGG - tig0019839:140768-140787 None:intergenic 45.0%
CTTCGTGGGAACTTTCTTGT+TGG + tig0019839:140769-140788 Msa1376930:CDS 45.0%
AACTTTCTTGTTGGGTACGC+TGG + tig0019839:140778-140797 Msa1376930:CDS 45.0%
! TTCTTTGGTGACACTGGTTG+AGG + tig0019839:140932-140951 Msa1376930:CDS 45.0%
! TCTTTGGTGACACTGGTTGA+GGG + tig0019839:140933-140952 Msa1376930:CDS 45.0%
TTGGGTGGTGATAGAAACTG+TGG + tig0019839:141040-141059 Msa1376930:CDS 45.0%
! TAAGGAGAGGTTAGGGTGTT+TGG + tig0019839:141085-141104 Msa1376930:CDS 45.0%
! GTTGGAGGAGTGTAAAGAGA+GGG + tig0019839:141148-141167 Msa1376930:CDS 45.0%
!! AGAGAGGGTGGTGATGATTT+TGG + tig0019839:141163-141182 Msa1376930:CDS 45.0%
AGAGAGGTGAAGGATAAGGT+TGG + tig0019839:141215-141234 Msa1376930:CDS 45.0%
GGTGAAGGATAAGGTTGGAA+TGG + tig0019839:141220-141239 Msa1376930:CDS 45.0%
GAAGGATAAGGTTGGAATGG+AGG + tig0019839:141223-141242 Msa1376930:CDS 45.0%
! GGTTGGAATGGAGGTGTATA+AGG + tig0019839:141232-141251 Msa1376930:CDS 45.0%
TCAGTTCTCGTGATTCCCTT+TGG + tig0019839:141327-141346 Msa1376930:CDS 45.0%
GTGGAGATATGTTTGTGGGT+GGG - tig0019839:140516-140535 None:intergenic 45.0%
GAGCGTGGAGATATGTTTGT+GGG - tig0019839:140520-140539 None:intergenic 45.0%
!! GAGTTCTAAGAAGGAGGAAG+CGG - tig0019839:140571-140590 None:intergenic 45.0%
!! CATGAGGAGTTCTAAGAAGG+AGG - tig0019839:140577-140596 None:intergenic 45.0%
CTCCTTCTTAGAACTCCTCA+TGG + tig0019839:140575-140594 Msa1376930:CDS 45.0%
!! GTCCATGAGGAGTTCTAAGA+AGG - tig0019839:140580-140599 None:intergenic 45.0%
!!! TGTTTTGAAGACGGTCCATG+AGG - tig0019839:140593-140612 None:intergenic 45.0%
GATGAGAGACTTGAGAGCAA+CGG - tig0019839:140628-140647 None:intergenic 45.0%
! AGTTTCTACCACCGGTTGAA+GGG - tig0019839:140710-140729 None:intergenic 45.0%
! TAGTTTCTACCACCGGTTGA+AGG - tig0019839:140711-140730 None:intergenic 45.0%
CAAGAAAGTTCCCACGAAGT+TGG - tig0019839:140768-140787 None:intergenic 45.0%
CTTCGTGGGAACTTTCTTGT+TGG + tig0019839:140769-140788 Msa1376930:CDS 45.0%
AACTTTCTTGTTGGGTACGC+TGG + tig0019839:140778-140797 Msa1376930:CDS 45.0%
! TTCTTTGGTGACACTGGTTG+AGG + tig0019839:140932-140951 Msa1376930:CDS 45.0%
! TCTTTGGTGACACTGGTTGA+GGG + tig0019839:140933-140952 Msa1376930:CDS 45.0%
TTGGGTGGTGATAGAAACTG+TGG + tig0019839:141040-141059 Msa1376930:CDS 45.0%
! TAAGGAGAGGTTAGGGTGTT+TGG + tig0019839:141085-141104 Msa1376930:CDS 45.0%
! GTTGGAGGAGTGTAAAGAGA+GGG + tig0019839:141148-141167 Msa1376930:CDS 45.0%
!! AGAGAGGGTGGTGATGATTT+TGG + tig0019839:141163-141182 Msa1376930:CDS 45.0%
AGAGAGGTGAAGGATAAGGT+TGG + tig0019839:141215-141234 Msa1376930:CDS 45.0%
GGTGAAGGATAAGGTTGGAA+TGG + tig0019839:141220-141239 Msa1376930:CDS 45.0%
GAAGGATAAGGTTGGAATGG+AGG + tig0019839:141223-141242 Msa1376930:CDS 45.0%
! GGTTGGAATGGAGGTGTATA+AGG + tig0019839:141232-141251 Msa1376930:CDS 45.0%
TCAGTTCTCGTGATTCCCTT+TGG + tig0019839:141327-141346 Msa1376930:CDS 45.0%
GAGATATGTTTGTGGGTGGG+AGG - tig0019839:140513-140532 None:intergenic 50.0%
CGTGGAGATATGTTTGTGGG+TGG - tig0019839:140517-140536 None:intergenic 50.0%
GGAGCGTGGAGATATGTTTG+TGG - tig0019839:140521-140540 None:intergenic 50.0%
TCTGTTTACCCTTCAACCGG+TGG + tig0019839:140699-140718 Msa1376930:CDS 50.0%
! CTTTGGTGACACTGGTTGAG+GGG + tig0019839:140934-140953 Msa1376930:CDS 50.0%
! GGTTGGAGGAGTGTAAAGAG+AGG + tig0019839:141147-141166 Msa1376930:CDS 50.0%
ACAGCAAGGGTTGTGGGATT+CGG + tig0019839:141190-141209 Msa1376930:CDS 50.0%
GGTGAGAGAGGTGAAGGATA+AGG + tig0019839:141211-141230 Msa1376930:CDS 50.0%
GGAAAAGGGTAGGGTGCATA+AGG + tig0019839:141253-141272 Msa1376930:CDS 50.0%
AAAGGGTAGGGTGCATAAGG+AGG + tig0019839:141256-141275 Msa1376930:CDS 50.0%
AAGGGTAGGGTGCATAAGGA+GGG + tig0019839:141257-141276 Msa1376930:CDS 50.0%
! GATTCCCTTTGGTTTCCCTC+TGG + tig0019839:141338-141357 Msa1376930:CDS 50.0%
CCTTCCAGAGGGAAACCAAA+GGG - tig0019839:141345-141364 None:intergenic 50.0%
ACCTTCCAGAGGGAAACCAA+AGG - tig0019839:141346-141365 None:intergenic 50.0%
GAGATATGTTTGTGGGTGGG+AGG - tig0019839:140513-140532 None:intergenic 50.0%
CGTGGAGATATGTTTGTGGG+TGG - tig0019839:140517-140536 None:intergenic 50.0%
GGAGCGTGGAGATATGTTTG+TGG - tig0019839:140521-140540 None:intergenic 50.0%
TCTGTTTACCCTTCAACCGG+TGG + tig0019839:140699-140718 Msa1376930:CDS 50.0%
! CTTTGGTGACACTGGTTGAG+GGG + tig0019839:140934-140953 Msa1376930:CDS 50.0%
! GGTTGGAGGAGTGTAAAGAG+AGG + tig0019839:141147-141166 Msa1376930:CDS 50.0%
ACAGCAAGGGTTGTGGGATT+CGG + tig0019839:141190-141209 Msa1376930:CDS 50.0%
GGTGAGAGAGGTGAAGGATA+AGG + tig0019839:141211-141230 Msa1376930:CDS 50.0%
GGAAAAGGGTAGGGTGCATA+AGG + tig0019839:141253-141272 Msa1376930:CDS 50.0%
AAAGGGTAGGGTGCATAAGG+AGG + tig0019839:141256-141275 Msa1376930:CDS 50.0%
AAGGGTAGGGTGCATAAGGA+GGG + tig0019839:141257-141276 Msa1376930:CDS 50.0%
! GATTCCCTTTGGTTTCCCTC+TGG + tig0019839:141338-141357 Msa1376930:CDS 50.0%
CCTTCCAGAGGGAAACCAAA+GGG - tig0019839:141345-141364 None:intergenic 50.0%
ACCTTCCAGAGGGAAACCAA+AGG - tig0019839:141346-141365 None:intergenic 50.0%
! ATGCGTGGTGGCGCGTAAAA+GGG - tig0019839:140478-140497 None:intergenic 55.0%
AGTGAAGGAGTCATGCGTGG+TGG - tig0019839:140490-140509 None:intergenic 55.0%
AGGAGTGAAGGAGTCATGCG+TGG - tig0019839:140493-140512 None:intergenic 55.0%
TTTGTGGGTGGGAGGAGTGA+AGG - tig0019839:140505-140524 None:intergenic 55.0%
GAGAGACTTGAGAGCAACGG+CGG - tig0019839:140625-140644 None:intergenic 55.0%
! GGAGGAGTGTAAAGAGAGGG+TGG + tig0019839:141151-141170 Msa1376930:CDS 55.0%
TGGAGTCACAGCAAGGGTTG+TGG + tig0019839:141183-141202 Msa1376930:CDS 55.0%
GGAGTCACAGCAAGGGTTGT+GGG + tig0019839:141184-141203 Msa1376930:CDS 55.0%
!! GTTGTGGGATTCGGTGAGAG+AGG + tig0019839:141199-141218 Msa1376930:CDS 55.0%
!! GGATTCGGTGAGAGAGGTGA+AGG + tig0019839:141205-141224 Msa1376930:CDS 55.0%
! CCCTTTGGTTTCCCTCTGGA+AGG + tig0019839:141342-141361 Msa1376930:CDS 55.0%
! ATGCGTGGTGGCGCGTAAAA+GGG - tig0019839:140478-140497 None:intergenic 55.0%
AGTGAAGGAGTCATGCGTGG+TGG - tig0019839:140490-140509 None:intergenic 55.0%
AGGAGTGAAGGAGTCATGCG+TGG - tig0019839:140493-140512 None:intergenic 55.0%
TTTGTGGGTGGGAGGAGTGA+AGG - tig0019839:140505-140524 None:intergenic 55.0%
GAGAGACTTGAGAGCAACGG+CGG - tig0019839:140625-140644 None:intergenic 55.0%
! GGAGGAGTGTAAAGAGAGGG+TGG + tig0019839:141151-141170 Msa1376930:CDS 55.0%
TGGAGTCACAGCAAGGGTTG+TGG + tig0019839:141183-141202 Msa1376930:CDS 55.0%
GGAGTCACAGCAAGGGTTGT+GGG + tig0019839:141184-141203 Msa1376930:CDS 55.0%
!! GTTGTGGGATTCGGTGAGAG+AGG + tig0019839:141199-141218 Msa1376930:CDS 55.0%
!! GGATTCGGTGAGAGAGGTGA+AGG + tig0019839:141205-141224 Msa1376930:CDS 55.0%
! CCCTTTGGTTTCCCTCTGGA+AGG + tig0019839:141342-141361 Msa1376930:CDS 55.0%
GCGTAAAAGGGAGAGGGTGG+TGG - tig0019839:140466-140485 None:intergenic 60.0%
GGTGGCGCGTAAAAGGGAGA+GGG - tig0019839:140472-140491 None:intergenic 60.0%
! TGGTGGCGCGTAAAAGGGAG+AGG - tig0019839:140473-140492 None:intergenic 60.0%
! CATGCGTGGTGGCGCGTAAA+AGG - tig0019839:140479-140498 None:intergenic 60.0%
GCGTAAAAGGGAGAGGGTGG+TGG - tig0019839:140466-140485 None:intergenic 60.0%
GGTGGCGCGTAAAAGGGAGA+GGG - tig0019839:140472-140491 None:intergenic 60.0%
! TGGTGGCGCGTAAAAGGGAG+AGG - tig0019839:140473-140492 None:intergenic 60.0%
! CATGCGTGGTGGCGCGTAAA+AGG - tig0019839:140479-140498 None:intergenic 60.0%
GGCGCGTAAAAGGGAGAGGG+TGG - tig0019839:140469-140488 None:intergenic 65.0%
ACGCTCCTCTCCTCCACCGA+CGG + tig0019839:140534-140553 Msa1376930:CDS 65.0%
GTGAACCGTCGGTGGAGGAG+AGG - tig0019839:140542-140561 None:intergenic 65.0%
AGCGGTTGCGCGTGAACCGT+CGG - tig0019839:140553-140572 None:intergenic 65.0%
GAGAGCAACGGCGGCGTTGT+TGG - tig0019839:140616-140635 None:intergenic 65.0%
GGCGCGTAAAAGGGAGAGGG+TGG - tig0019839:140469-140488 None:intergenic 65.0%
ACGCTCCTCTCCTCCACCGA+CGG + tig0019839:140534-140553 Msa1376930:CDS 65.0%
GTGAACCGTCGGTGGAGGAG+AGG - tig0019839:140542-140561 None:intergenic 65.0%
AGCGGTTGCGCGTGAACCGT+CGG - tig0019839:140553-140572 None:intergenic 65.0%
GAGAGCAACGGCGGCGTTGT+TGG - tig0019839:140616-140635 None:intergenic 65.0%
GTCGGTGGAGGAGAGGAGCG+TGG - tig0019839:140535-140554 None:intergenic 70.0%
TGCGCGTGAACCGTCGGTGG+AGG - tig0019839:140547-140566 None:intergenic 70.0%
GGTTGCGCGTGAACCGTCGG+TGG - tig0019839:140550-140569 None:intergenic 70.0%
GTCGGTGGAGGAGAGGAGCG+TGG - tig0019839:140535-140554 None:intergenic 70.0%
TGCGCGTGAACCGTCGGTGG+AGG - tig0019839:140547-140566 None:intergenic 70.0%
GGTTGCGCGTGAACCGTCGG+TGG - tig0019839:140550-140569 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0019839 gene 140381 141373 140381 ID=Msa1376930;Name=Msa1376930
tig0019839 mRNA 140381 141373 140381 ID=Msa1376930-mRNA-1;Parent=Msa1376930;Name=Msa1376930-mRNA-1;_AED=0.00;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|330
tig0019839 exon 140381 141373 140381 ID=Msa1376930-mRNA-1:exon:5378;Parent=Msa1376930-mRNA-1
tig0019839 CDS 140381 141373 140381 ID=Msa1376930-mRNA-1:cds;Parent=Msa1376930-mRNA-1
Gene Sequence

>Msa1376930

ATGACAAAACTCACAGTCACAAACCTAATAAACATAATCAAAGACAAAGCTTCGCAAAGCAAAGCAGCGTTACTTTCTAAATCCACCACCCTCTCCCTTTTACGCGCCACCACGCATGACTCCTTCACTCCTCCCACCCACAAACATATCTCCACGCTCCTCTCCTCCACCGACGGTTCACGCGCAACCGCTTCCTCCTTCTTAGAACTCCTCATGGACCGTCTTCAAAACACCAACAACGCCGCCGTTGCTCTCAAGTCTCTCATCATCGTTCATCATATCATCAGCCATGGAAGCTTCATACTTCAAGATCAGTTATCTGTTTACCCTTCAACCGGTGGTAGAAACTATCTTAACCTCTCGAATTTTCGACATAATACAAATCCAACTTCGTGGGAACTTTCTTGTTGGGTACGCTGGTTTGCTGAACATATAGAGAATCTTCTTTGTACTTCACGAATATTAGGTTTCTTCTTTCTTGGGAAATCTTTGTGTGACGGTGAAGAGAGAGTTTCTTGTCTTACAAACTGTGGTTTGTTGAAGGAGTTTGATTCTTTGGTGACACTGGTTGAGGGGATTTGTAAGAGACCAGATCAAGTGAACATGAACAAGAACAAGAACAAGTTGGTGGATGAGATAGTGAATTTGGTTTGTGAAGATTGGGTGGTGATAGAAACTGTGGTGAAAGTTGAAGTGAATGAGTTTAAGGAGAGGTTAGGGTGTTTGGAATTTGGAGAAGCTGTTGAATTGGTTTGTTGTTTGAAGAGGTTGGAGGAGTGTAAAGAGAGGGTGGTGATGATTTTGGAGTCACAGCAAGGGTTGTGGGATTCGGTGAGAGAGGTGAAGGATAAGGTTGGAATGGAGGTGTATAAGGAAAAGGGTAGGGTGCATAAGGAGGGAAGAAAGTTAAGGTTTAGTGAGTCTGATCGGTTTTCTGCTAGAGTTATCAGTTCTCGTGATTCCCTTTGGTTTCCCTCTGGAAGGTTATTGTAA

Protein sequence

>Msa1376930

MTKLTVTNLINIIKDKASQSKAALLSKSTTLSLLRATTHDSFTPPTHKHISTLLSSTDGSRATASSFLELLMDRLQNTNNAAVALKSLIIVHHIISHGSFILQDQLSVYPSTGGRNYLNLSNFRHNTNPTSWELSCWVRWFAEHIENLLCTSRILGFFFLGKSLCDGEERVSCLTNCGLLKEFDSLVTLVEGICKRPDQVNMNKNKNKLVDEIVNLVCEDWVVIETVVKVEVNEFKERLGCLEFGEAVELVCCLKRLEECKERVVMILESQQGLWDSVREVKDKVGMEVYKEKGRVHKEGRKLRFSESDRFSARVISSRDSLWFPSGRLL*