AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0029850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0029850 MtrunA17_Chr1g0186811 99.032 310 3 0 1 310 1 310 0.0 638
Msa0029850 MtrunA17_Chr1g0167751 85.852 311 43 1 1 310 1 311 0.0 567
Msa0029850 MtrunA17_Chr1g0190121 83.871 310 50 0 1 310 1 310 0.0 565
Msa0029850 MtrunA17_Chr7g0274931 84.839 310 47 0 1 310 1 310 0.0 563
Msa0029850 MtrunA17_Chr5g0436061 81.457 302 55 1 1 301 17 318 0.0 525
Msa0029850 MtrunA17_Chr8g0387541 75.405 309 75 1 1 308 1 309 0.0 508
Msa0029850 MtrunA17_Chr8g0334361 77.586 290 65 0 6 295 4 293 4.80e-177 491
Msa0029850 MtrunA17_Chr7g0272371 74.026 308 74 2 1 308 5 306 8.25e-173 481
Msa0029850 MtrunA17_Chr7g0268381 48.175 274 140 2 26 298 27 299 3.26e-94 282
Msa0029850 MtrunA17_Chr5g0445011 47.687 281 143 2 26 305 17 294 7.98e-94 281
Msa0029850 MtrunA17_Chr8g0364041 47.810 274 141 2 26 298 20 292 2.99e-92 276
Msa0029850 MtrunA17_Chr8g0378521 45.608 296 152 3 4 298 7 294 3.55e-92 276
Msa0029850 MtrunA17_Chr5g0415261 47.810 274 141 2 26 298 20 292 6.27e-91 273
Msa0029850 MtrunA17_Chr1g0165341 45.247 263 141 3 25 285 15 276 1.85e-89 270
Msa0029850 MtrunA17_Chr4g0025471 47.869 305 140 8 9 295 649 952 1.09e-83 272
Msa0029850 MtrunA17_Chr2g0322121 47.869 305 140 8 9 295 644 947 1.28e-83 271
Msa0029850 MtrunA17_Chr3g0097231 45.059 253 132 4 33 279 195 446 1.30e-72 232
Msa0029850 MtrunA17_Chr2g0330311 43.019 265 142 6 22 279 211 473 3.90e-67 218
Msa0029850 MtrunA17_Chr2g0330331 42.520 254 138 5 33 279 60 312 1.61e-61 199
Msa0029850 MtrunA17_Chr1g0196211 47.449 196 95 4 108 295 2 197 3.08e-51 169
Msa0029850 MtrunA17_Chr8g0369981 31.746 315 148 10 33 281 100 413 1.67e-38 142
Msa0029850 MtrunA17_Chr1g0196221 54.762 84 32 1 30 107 552 635 8.42e-24 102
Msa0029850 MtrunA17_Chr2g0330011 36.134 119 66 4 31 140 232 349 7.87e-16 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0029850 AT2G39840.1 79.412 306 62 1 1 305 14 319 0.0 525
Msa0029850 AT2G29400.1 80.921 304 54 3 1 301 15 317 0.0 520
Msa0029850 AT5G43380.1 77.316 313 71 0 1 313 1 313 0.0 519
Msa0029850 AT5G43380.2 75.692 325 69 1 1 315 1 325 0.0 518
Msa0029850 AT5G43380.3 77.316 313 71 0 1 313 1 313 0.0 516
Msa0029850 AT5G59160.3 79.208 303 61 2 1 301 9 311 0.0 515
Msa0029850 AT5G59160.2 79.208 303 61 2 1 301 9 311 0.0 515
Msa0029850 AT5G59160.1 79.208 303 61 2 1 301 9 311 0.0 515
Msa0029850 AT1G64040.1 77.273 308 69 1 1 307 1 308 0.0 512
Msa0029850 AT3G46820.1 77.228 303 67 1 1 301 9 311 0.0 504
Msa0029850 AT4G11240.1 73.052 308 82 1 1 307 1 308 5.31e-177 493
Msa0029850 AT5G27840.4 76.190 294 68 1 1 294 9 300 1.56e-173 484
Msa0029850 AT5G27840.1 76.190 294 68 1 1 294 9 300 1.70e-173 484
Msa0029850 AT5G27840.2 76.190 294 68 1 1 294 9 300 2.54e-173 483
Msa0029850 AT5G27840.3 76.190 294 68 1 1 294 9 300 2.54e-173 483
Msa0029850 AT3G05580.1 76.190 294 68 1 1 294 9 300 6.94e-171 477
Msa0029850 AT3G05580.2 75.203 246 59 1 1 246 9 252 2.06e-138 392
Msa0029850 AT5G55260.1 48.043 281 142 2 26 305 17 294 4.38e-96 287
Msa0029850 AT2G42500.1 48.540 274 139 2 26 298 27 299 3.24e-95 285
Msa0029850 AT3G58500.1 47.810 274 141 2 26 298 27 299 1.28e-93 281
Msa0029850 AT1G69960.1 46.284 296 150 3 4 298 6 293 7.00e-93 279
Msa0029850 AT4G26720.1 45.230 283 146 2 26 299 17 299 1.35e-92 278
Msa0029850 AT1G10430.2 45.270 296 153 3 4 298 5 292 1.87e-91 275
Msa0029850 AT1G10430.1 45.270 296 153 3 4 298 5 292 1.87e-91 275
Msa0029850 AT1G59830.1 45.946 296 151 3 4 298 5 292 3.92e-91 274
Msa0029850 AT3G19980.1 45.247 263 141 3 25 285 15 276 5.46e-89 268
Msa0029850 AT1G50370.1 44.867 263 142 3 25 285 15 276 8.71e-89 268
Msa0029850 AT5G55260.2 41.925 322 142 3 26 305 17 335 1.43e-87 266
Msa0029850 AT4G03080.1 46.774 310 148 7 3 295 524 833 5.47e-83 268
Msa0029850 AT2G27210.2 47.213 305 142 8 9 295 650 953 4.03e-82 268
Msa0029850 AT2G27210.1 47.213 305 142 8 9 295 655 958 4.26e-82 268
Msa0029850 AT1G08420.2 47.213 305 142 8 9 295 661 964 2.13e-81 266
Msa0029850 AT1G08420.1 47.213 305 142 8 9 295 666 969 2.24e-81 266
Msa0029850 AT1G59830.2 48.606 251 120 3 4 253 5 247 2.28e-80 245
Msa0029850 AT1G03445.2 46.831 284 134 7 26 294 476 757 2.24e-78 254
Msa0029850 AT1G03445.1 46.831 284 134 7 26 294 476 757 2.87e-78 254
Msa0029850 AT2G42500.2 49.321 221 110 2 79 298 33 252 4.11e-75 232
Msa0029850 AT2G42810.1 44.664 253 133 4 33 279 197 448 1.13e-69 224
Msa0029850 AT2G42810.5 44.664 253 133 4 33 279 197 448 1.13e-69 224
Msa0029850 AT2G42810.4 44.664 253 133 4 33 279 197 448 1.13e-69 224
Msa0029850 AT2G42810.2 44.664 253 133 4 33 279 251 502 3.40e-69 225
Msa0029850 AT2G42810.3 44.664 253 133 4 33 279 250 501 3.51e-69 225
Msa0029850 AT2G42500.4 48.299 147 72 3 26 168 27 173 2.89e-44 150
Msa0029850 AT2G42500.5 47.403 154 75 4 26 175 27 178 9.46e-44 148
Msa0029850 AT2G42500.3 50.360 139 65 3 26 160 27 165 1.59e-43 147
Msa0029850 AT5G63870.1 30.473 338 168 11 33 303 52 389 1.10e-35 134
Msa0029850 AT5G63870.2 30.473 338 168 11 33 303 52 389 1.10e-35 134
Msa0029850 AT1G48120.1 29.412 340 168 9 31 300 628 965 7.57e-30 120
Msa0029850 AT5G63870.3 31.200 250 132 6 33 242 52 301 6.03e-29 113
Msa0029850 AT5G10900.3 33.491 212 117 8 55 245 225 433 2.17e-22 98.2
Msa0029850 AT5G10900.1 33.491 212 117 8 55 245 225 433 2.32e-22 98.2
Msa0029850 AT5G10900.2 33.491 212 117 8 55 245 225 433 2.36e-22 98.2

Find 63 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGCATCTATCATATTAT+TGG 0.141420 1_1:+55429184 Msa0029850:intron
TCAAATTCTCCACAGTAATT+AGG 0.241896 1_1:-55428405 None:intergenic
GTCTATTATGTGACCTCTTA+TGG 0.268848 1_1:+55428093 Msa0029850:CDS
AAATCCGTAGATACGGTTTA+TGG 0.280200 1_1:-55427883 None:intergenic
TGGAATTGAAATGATATTAT+AGG 0.288763 1_1:-55426284 None:intergenic
AATATACCACAGATCTTAAT+AGG 0.298021 1_1:-55426639 None:intergenic
TGATTTAAATCGTGTAATTC+AGG 0.302882 1_1:-55428029 None:intergenic
TAGAAAACAAATTAGAAATA+TGG 0.306123 1_1:+55426461 Msa0029850:exon
ATGATCTTGATTTGATTTGC+AGG 0.337705 1_1:+55428213 Msa0029850:CDS
AAAAGAGGAGAGAAGAATAA+AGG 0.348037 1_1:-55426250 None:intergenic
GGAATTGAAATGATATTATA+GGG 0.349365 1_1:-55426283 None:intergenic
CCGTGTGAAGTTCCTGAATC+TGG 0.374187 1_1:+55428071 Msa0029850:CDS
CGTGGAGTTTCATATACATT+TGG 0.381055 1_1:+55428158 Msa0029850:CDS
TAGTAGTGATGTTCGTGGTT+GGG 0.384770 1_1:+55428124 Msa0029850:CDS
AGAAACAATATGTCTTCTTC+TGG 0.391096 1_1:+55427800 Msa0029850:CDS
TTTGATTTGCAGGGCTCATC+AGG 0.392866 1_1:+55428223 Msa0029850:CDS
ATTCGTGGTTACCCCTTAGA+AGG 0.394389 1_1:-55427854 None:intergenic
ATGTTACCAGGAGATATTCA+TGG 0.394694 1_1:+55427675 Msa0029850:intron
TTGTTGATGGTATTATCAAT+AGG 0.402079 1_1:+55426493 Msa0029850:CDS
TCACATAATAGACCAGATTC+AGG 0.431932 1_1:-55428083 None:intergenic
GAAAGCTGAACCTGCTTCCC+TGG 0.443268 1_1:-55426537 None:intergenic
AGTAGTGATGTTCGTGGTTG+GGG 0.445269 1_1:+55428125 Msa0029850:CDS
TATATTCGAATGAATTCAAA+TGG 0.447104 1_1:-55426322 None:intergenic
ATGGAACGTGGAGTTGTTGA+TGG 0.454585 1_1:+55426480 Msa0029850:CDS
AAGAGGAAGACCAGGGAAGC+AGG 0.459465 1_1:+55426527 Msa0029850:CDS
GGAGATACAATGTGAAGCTA+TGG 0.485510 1_1:+55427922 Msa0029850:CDS
CAACCACGAACATCACTACT+AGG 0.486128 1_1:-55428122 None:intergenic
GCCTCTAGTTTCAAGAGATT+AGG 0.495023 1_1:-55426615 None:intergenic
AAGAAACTCTTTAACCCTAT+CGG 0.496948 1_1:-55428183 None:intergenic
AATAGGTTACTTGAAGTAAG+AGG 0.499906 1_1:+55426510 Msa0029850:CDS
CTAGTAGTGATGTTCGTGGT+TGG 0.504572 1_1:+55428123 Msa0029850:CDS
AAAGCTTATAAGAAGAGTAG+TGG 0.505031 1_1:-55426355 None:intergenic
TACTAGGATCAGACCATAAG+AGG 0.507611 1_1:-55428106 None:intergenic
TGATCTTGATTTGATTTGCA+GGG 0.513485 1_1:+55428214 Msa0029850:CDS
GTCAATATTCCGACCTTCTG+AGG 0.518139 1_1:+55427697 Msa0029850:CDS
CTTGAAGTAAGAGGAAGACC+AGG 0.522885 1_1:+55426519 Msa0029850:CDS
ATATACATTTGGTGCCGATA+GGG 0.527545 1_1:+55428169 Msa0029850:CDS
CTAGTTTCAAGAGATTAGGC+TGG 0.529287 1_1:-55426611 None:intergenic
CATCATAAAATCCGTAGATA+CGG 0.530362 1_1:-55427890 None:intergenic
CATATACATTTGGTGCCGAT+AGG 0.532156 1_1:+55428168 Msa0029850:CDS
TTGTTGCAGGTTGTGGAAGA+CGG 0.543349 1_1:+55428336 Msa0029850:intron
GTGCTTCCAAAGCTAAACTT+AGG 0.544982 1_1:-55428504 None:intergenic
CTCGAAAAGCCTCAGAAGGT+CGG 0.552388 1_1:-55427706 None:intergenic
GGTTTATGGAAGCACATTCG+TGG 0.557667 1_1:-55427869 None:intergenic
TGTGGAGAATTTGACAATGC+TGG 0.567360 1_1:+55428414 Msa0029850:CDS
TTTCAATTGTTTGCCTGTGG+CGG 0.574441 1_1:+55427962 Msa0029850:CDS
GCTTCCATAAACCGTATCTA+CGG 0.579276 1_1:+55427879 Msa0029850:CDS
AAGCAGGTTCAGCTTTCTGA+AGG 0.586300 1_1:+55426543 Msa0029850:CDS
GATCCTAGTAGTGATGTTCG+TGG 0.596697 1_1:+55428119 Msa0029850:CDS
ATAAAGGTGATGATGATACA+TGG 0.599974 1_1:-55426234 None:intergenic
TCATCAATGAGAGCCGCCAC+AGG 0.602243 1_1:-55427975 None:intergenic
GGTTGGGGAGAAAGCGAGCG+TGG 0.603320 1_1:+55428140 Msa0029850:CDS
TTGTTTCAATTGTTTGCCTG+TGG 0.606705 1_1:+55427959 Msa0029850:CDS
GAAAAGATTATCTGTATGCA+TGG 0.619510 1_1:+55427996 Msa0029850:CDS
CAAATTAGAAATATGGAACG+TGG 0.634209 1_1:+55426468 Msa0029850:exon
AATAAATAATTCGAGCGAGG+AGG 0.639135 1_1:-55427741 None:intergenic
CCAGATTCAGGAACTTCACA+CGG 0.648649 1_1:-55428071 None:intergenic
GAGGCACCTATTAAGATCTG+TGG 0.649585 1_1:+55426633 Msa0029850:CDS
CGTACTCGAAAAGCCTCAGA+AGG 0.657790 1_1:-55427710 None:intergenic
TTAGGAGACTATGTTGATCG+CGG 0.661259 1_1:+55427765 Msa0029850:CDS
GCCTAATCTCTTGAAACTAG+AGG 0.671584 1_1:+55426614 Msa0029850:CDS
TTGAAGTAAGAGGAAGACCA+GGG 0.672507 1_1:+55426520 Msa0029850:CDS
AAGATTATCTGTATGCATGG+TGG 0.720136 1_1:+55427999 Msa0029850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTGATTTAATTAGTAT+AGG + chr1_1:55426694-55426713 Msa0029850:intron 10.0%
!!! TATTTCTAATTTGTTTTCTA+AGG - chr1_1:55426461-55426480 None:intergenic 15.0%
!! TAGAAAACAAATTAGAAATA+TGG + chr1_1:55426461-55426480 Msa0029850:exon 15.0%
!! TCAATTATATTCATCATAAT+TGG + chr1_1:55426758-55426777 Msa0029850:intron 15.0%
!! TCATACAAAGTAATTATATA+TGG + chr1_1:55426962-55426981 Msa0029850:intron 15.0%
!! AAAAAAATTATGTATTGTCT+AGG + chr1_1:55426999-55427018 Msa0029850:intron 15.0%
!! AAAAAATTATGTATTGTCTA+GGG + chr1_1:55427000-55427019 Msa0029850:intron 15.0%
!!! CTTTAAAAACTTTTATATTG+CGG + chr1_1:55427237-55427256 Msa0029850:intron 15.0%
!! TTATGTATAAACTTAGAATT+TGG - chr1_1:55428292-55428311 None:intergenic 15.0%
!! TTCTAAGTTTATACATAATA+AGG + chr1_1:55428294-55428313 Msa0029850:intron 15.0%
!! GGAATTGAAATGATATTATA+GGG - chr1_1:55426286-55426305 None:intergenic 20.0%
!! TGGAATTGAAATGATATTAT+AGG - chr1_1:55426287-55426306 None:intergenic 20.0%
!! TATATTCGAATGAATTCAAA+TGG - chr1_1:55426325-55426344 None:intergenic 20.0%
!! TAATAGTTAAAGAGAGAAAA+AGG - chr1_1:55426787-55426806 None:intergenic 20.0%
!!! TTACAAATTTTAAAGTGACA+CGG + chr1_1:55426804-55426823 Msa0029850:intron 20.0%
!! TGAAACAAGAATGAATAATT+AGG - chr1_1:55427492-55427511 None:intergenic 20.0%
!!! TAAAAACTTTTTCCTTCTAA+GGG + chr1_1:55427842-55427861 Msa0029850:CDS 20.0%
!!! GATTTTATGATGAATGTAAA+AGG + chr1_1:55427901-55427920 Msa0029850:CDS 20.0%
!!! TTGTTGATGGTATTATCAAT+AGG + chr1_1:55426493-55426512 Msa0029850:CDS 25.0%
! AATATACCACAGATCTTAAT+AGG - chr1_1:55426642-55426661 None:intergenic 25.0%
!!! AGGATTTAATTTGTATACGT+CGG + chr1_1:55426714-55426733 Msa0029850:intron 25.0%
!!! TCATCGTAACAAGTTTTATA+CGG - chr1_1:55426852-55426871 None:intergenic 25.0%
!!! TCTAAACTTGTTTTAATGTC+AGG - chr1_1:55426925-55426944 None:intergenic 25.0%
! CATCAGTTTAATTAGAATTG+TGG - chr1_1:55427447-55427466 None:intergenic 25.0%
! CAATTCTAATTAAACTGATG+TGG + chr1_1:55427447-55427466 Msa0029850:intron 25.0%
! ATAAGTGTGAAACTAAACAT+AGG + chr1_1:55427568-55427587 Msa0029850:intron 25.0%
! AGGTTAAATATGTTTGATCA+CGG - chr1_1:55427605-55427624 None:intergenic 25.0%
! TTTCATTTCTTTATGTTACC+AGG + chr1_1:55427663-55427682 Msa0029850:intron 25.0%
! AAAAATAAATAATTCGAGCG+AGG - chr1_1:55427747-55427766 None:intergenic 25.0%
!!! CGCTCGAATTATTTATTTTT+AGG + chr1_1:55427747-55427766 Msa0029850:CDS 25.0%
!! CTTAGAAGGAAAAAGTTTTT+AGG - chr1_1:55427843-55427862 None:intergenic 25.0%
!!! CTAAAAACTTTTTCCTTCTA+AGG + chr1_1:55427841-55427860 Msa0029850:CDS 25.0%
!!! AAAAACTTTTTCCTTCTAAG+GGG + chr1_1:55427843-55427862 Msa0029850:CDS 25.0%
! TGATTTAAATCGTGTAATTC+AGG - chr1_1:55428032-55428051 None:intergenic 25.0%
!! TGTAATTTTCTTTTTGTTGC+AGG + chr1_1:55428323-55428342 Msa0029850:intron 25.0%
!! CAAAATACCTTGAATTTTGT+TGG - chr1_1:55428552-55428571 None:intergenic 25.0%
! GTTTGAATATGTAATCTCAA+GGG - chr1_1:55428680-55428699 None:intergenic 25.0%
! AGTTTGAATATGTAATCTCA+AGG - chr1_1:55428681-55428700 None:intergenic 25.0%
!! GATATGTAATGTTTGAAATG+TGG + chr1_1:55428872-55428891 Msa0029850:intron 25.0%
!!! GTGTCATTTTTCTTTTCTTT+TGG + chr1_1:55429044-55429063 Msa0029850:intron 25.0%
! AGATGCATCTATCATATTAT+TGG + chr1_1:55429184-55429203 Msa0029850:intron 25.0%
! ATAAAGGTGATGATGATACA+TGG - chr1_1:55426237-55426256 None:intergenic 30.0%
AAAAGAGGAGAGAAGAATAA+AGG - chr1_1:55426253-55426272 None:intergenic 30.0%
AATGGAAAAAGAGAAGATAG+TGG - chr1_1:55426307-55426326 None:intergenic 30.0%
AAAGCTTATAAGAAGAGTAG+TGG - chr1_1:55426358-55426377 None:intergenic 30.0%
CAAATTAGAAATATGGAACG+TGG + chr1_1:55426468-55426487 Msa0029850:exon 30.0%
AATAGGTTACTTGAAGTAAG+AGG + chr1_1:55426510-55426529 Msa0029850:CDS 30.0%
! TAATTTGTATACGTCGGTAA+AGG + chr1_1:55426720-55426739 Msa0029850:intron 30.0%
TCTCATTATTAAGCTATGTG+TGG + chr1_1:55426890-55426909 Msa0029850:intron 30.0%
AAATTATGTATTGTCTAGGG+CGG + chr1_1:55427003-55427022 Msa0029850:intron 30.0%
!! TAAAGGTGTTACATAGGTAA+AGG - chr1_1:55427181-55427200 None:intergenic 30.0%
! ACTGTTGTTGTTATAGAAGT+AGG + chr1_1:55427338-55427357 Msa0029850:intron 30.0%
! CTGTTGTTGTTATAGAAGTA+GGG + chr1_1:55427339-55427358 Msa0029850:intron 30.0%
AGAATTGTGGAGTACATAAA+GGG - chr1_1:55427434-55427453 None:intergenic 30.0%
TAGAATTGTGGAGTACATAA+AGG - chr1_1:55427435-55427454 None:intergenic 30.0%
! ATTTTCTATCTGTGAAAACG+CGG + chr1_1:55427544-55427563 Msa0029850:intron 30.0%
ATGAAACAAGACATTAGCAT+AGG - chr1_1:55427649-55427668 None:intergenic 30.0%
AGAAACAATATGTCTTCTTC+TGG + chr1_1:55427800-55427819 Msa0029850:CDS 30.0%
CATCATAAAATCCGTAGATA+CGG - chr1_1:55427893-55427912 None:intergenic 30.0%
GAAAAGATTATCTGTATGCA+TGG + chr1_1:55427996-55428015 Msa0029850:CDS 30.0%
AAGAAACTCTTTAACCCTAT+CGG - chr1_1:55428186-55428205 None:intergenic 30.0%
!! ATGATCTTGATTTGATTTGC+AGG + chr1_1:55428213-55428232 Msa0029850:CDS 30.0%
!! TGATCTTGATTTGATTTGCA+GGG + chr1_1:55428214-55428233 Msa0029850:CDS 30.0%
TCAAATTCTCCACAGTAATT+AGG - chr1_1:55428408-55428427 None:intergenic 30.0%
! AACTTAGGCTTTTTATCAAG+AGG - chr1_1:55428492-55428511 None:intergenic 30.0%
! AAAAAGCCTAAGTTTAGCTT+TGG + chr1_1:55428498-55428517 Msa0029850:CDS 30.0%
TAGTAGTCCAACAAAATTCA+AGG + chr1_1:55428542-55428561 Msa0029850:intron 30.0%
GTATATATCAGTTGTTCATG+AGG - chr1_1:55428751-55428770 None:intergenic 30.0%
ATATTGTCAAACGCAATTGA+AGG + chr1_1:55429015-55429034 Msa0029850:intron 30.0%
GCATTATTGAATCTAGAAAC+AGG - chr1_1:55429151-55429170 None:intergenic 30.0%
TAGGGAAAGAGAAGAAAAAG+AGG - chr1_1:55426268-55426287 None:intergenic 35.0%
ATTTGCCAAGATTCGAAGTT+TGG + chr1_1:55427154-55427173 Msa0029850:intron 35.0%
!! AGGGATTAAAGGTGTTACAT+AGG - chr1_1:55427187-55427206 None:intergenic 35.0%
CTTTATAGTTTAGCGAATCG+CGG - chr1_1:55427282-55427301 None:intergenic 35.0%
TTGTTATAGAAGTAGGGAGT+AGG + chr1_1:55427345-55427364 Msa0029850:intron 35.0%
TGTTATAGAAGTAGGGAGTA+GGG + chr1_1:55427346-55427365 Msa0029850:intron 35.0%
!!! ACTCTGAAAGCTCTGTTTTT+TGG + chr1_1:55427385-55427404 Msa0029850:intron 35.0%
!!! TGAAAGCTCTGTTTTTTGGT+TGG + chr1_1:55427389-55427408 Msa0029850:intron 35.0%
AGTGTGAAACTAAACATAGG+TGG + chr1_1:55427571-55427590 Msa0029850:intron 35.0%
CACAACAGTAATACATGTCA+AGG - chr1_1:55427625-55427644 None:intergenic 35.0%
CTTGACATGTATTACTGTTG+TGG + chr1_1:55427623-55427642 Msa0029850:intron 35.0%
ATGTTACCAGGAGATATTCA+TGG + chr1_1:55427675-55427694 Msa0029850:intron 35.0%
TATTGACCATGAATATCTCC+TGG - chr1_1:55427684-55427703 None:intergenic 35.0%
AATAAATAATTCGAGCGAGG+AGG - chr1_1:55427744-55427763 None:intergenic 35.0%
AAATCCGTAGATACGGTTTA+TGG - chr1_1:55427886-55427905 None:intergenic 35.0%
TTGTTTCAATTGTTTGCCTG+TGG + chr1_1:55427959-55427978 Msa0029850:CDS 35.0%
AAGATTATCTGTATGCATGG+TGG + chr1_1:55427999-55428018 Msa0029850:CDS 35.0%
TCACATAATAGACCAGATTC+AGG - chr1_1:55428086-55428105 None:intergenic 35.0%
GTCTATTATGTGACCTCTTA+TGG + chr1_1:55428093-55428112 Msa0029850:CDS 35.0%
CGTGGAGTTTCATATACATT+TGG + chr1_1:55428158-55428177 Msa0029850:CDS 35.0%
!! ATATACATTTGGTGCCGATA+GGG + chr1_1:55428169-55428188 Msa0029850:CDS 35.0%
! TTTCTTTTTGTTGCAGGTTG+TGG + chr1_1:55428329-55428348 Msa0029850:intron 35.0%
! TTTTCAGCACCTAATTACTG+TGG + chr1_1:55428396-55428415 Msa0029850:CDS 35.0%
TACACGGGAAAGTTGTAAAA+TGG - chr1_1:55428642-55428661 None:intergenic 35.0%
! ATTTTACAACTTTCCCGTGT+AGG + chr1_1:55428641-55428660 Msa0029850:intron 35.0%
GAATATGTAATCTCAAGGGA+CGG - chr1_1:55428676-55428695 None:intergenic 35.0%
! CAAAAAATGCTTGCTGAAAG+TGG - chr1_1:55428820-55428839 None:intergenic 35.0%
!!! CACTTTCAGCAAGCATTTTT+TGG + chr1_1:55428818-55428837 Msa0029850:intron 35.0%
AATATTTAGCTGTCCCTGAA+GGG - chr1_1:55428961-55428980 None:intergenic 35.0%
AAATATTTAGCTGTCCCTGA+AGG - chr1_1:55428962-55428981 None:intergenic 35.0%
GCGTTTGACAATATTGTACA+AGG - chr1_1:55429009-55429028 None:intergenic 35.0%
TTGAAGTAAGAGGAAGACCA+GGG + chr1_1:55426520-55426539 Msa0029850:CDS 40.0%
CTAGTTTCAAGAGATTAGGC+TGG - chr1_1:55426614-55426633 None:intergenic 40.0%
GCCTAATCTCTTGAAACTAG+AGG + chr1_1:55426614-55426633 Msa0029850:CDS 40.0%
! GCCTCTAGTTTCAAGAGATT+AGG - chr1_1:55426618-55426637 None:intergenic 40.0%
AAGGTCCAAACTTCGAATCT+TGG - chr1_1:55427162-55427181 None:intergenic 40.0%
!!! AGCTCTGTTTTTTGGTTGGT+AGG + chr1_1:55427393-55427412 Msa0029850:intron 40.0%
TTAGGAGACTATGTTGATCG+CGG + chr1_1:55427765-55427784 Msa0029850:CDS 40.0%
GCTTCCATAAACCGTATCTA+CGG + chr1_1:55427879-55427898 Msa0029850:CDS 40.0%
GGAGATACAATGTGAAGCTA+TGG + chr1_1:55427922-55427941 Msa0029850:CDS 40.0%
TTTCAATTGTTTGCCTGTGG+CGG + chr1_1:55427962-55427981 Msa0029850:CDS 40.0%
TACTAGGATCAGACCATAAG+AGG - chr1_1:55428109-55428128 None:intergenic 40.0%
TAGTAGTGATGTTCGTGGTT+GGG + chr1_1:55428124-55428143 Msa0029850:CDS 40.0%
!! CATATACATTTGGTGCCGAT+AGG + chr1_1:55428168-55428187 Msa0029850:CDS 40.0%
TGTGGAGAATTTGACAATGC+TGG + chr1_1:55428414-55428433 Msa0029850:CDS 40.0%
GTGCTTCCAAAGCTAAACTT+AGG - chr1_1:55428507-55428526 None:intergenic 40.0%
TGAATACACAACTTGCACTG+AGG + chr1_1:55428578-55428597 Msa0029850:intron 40.0%
! AAAATGCTTGCTGAAAGTGG+AGG - chr1_1:55428817-55428836 None:intergenic 40.0%
!! TTTGGTGCTAAAGCATGACA+TGG + chr1_1:55428836-55428855 Msa0029850:intron 40.0%
! GTTTGAAATGTGGCCAAAGT+TGG + chr1_1:55428882-55428901 Msa0029850:intron 40.0%
CTTTCTTTCCAAGCCAACTT+TGG - chr1_1:55428898-55428917 None:intergenic 40.0%
AATCTCTGCTTTACCCTTCA+GGG + chr1_1:55428945-55428964 Msa0029850:intron 40.0%
ATGGAACGTGGAGTTGTTGA+TGG + chr1_1:55426480-55426499 Msa0029850:CDS 45.0%
CTTGAAGTAAGAGGAAGACC+AGG + chr1_1:55426519-55426538 Msa0029850:CDS 45.0%
AAGCAGGTTCAGCTTTCTGA+AGG + chr1_1:55426543-55426562 Msa0029850:CDS 45.0%
! GAGGCACCTATTAAGATCTG+TGG + chr1_1:55426633-55426652 Msa0029850:CDS 45.0%
GCTTGCAAATACAGCTGATG+TGG + chr1_1:55427052-55427071 Msa0029850:intron 45.0%
CGGTTGAGCTAAGGGATTAA+AGG - chr1_1:55427198-55427217 None:intergenic 45.0%
GTCTATGCAATGACATCGCT+CGG - chr1_1:55427218-55427237 None:intergenic 45.0%
GTAGGGAGTAGGGATCAAAT+TGG + chr1_1:55427356-55427375 Msa0029850:intron 45.0%
GTCAATATTCCGACCTTCTG+AGG + chr1_1:55427697-55427716 Msa0029850:CDS 45.0%
!!! CTTCTGAGGCTTTTCGAGTA+CGG + chr1_1:55427711-55427730 Msa0029850:CDS 45.0%
ATTCGTGGTTACCCCTTAGA+AGG - chr1_1:55427857-55427876 None:intergenic 45.0%
! GGTTTATGGAAGCACATTCG+TGG - chr1_1:55427872-55427891 None:intergenic 45.0%
CCAGATTCAGGAACTTCACA+CGG - chr1_1:55428074-55428093 None:intergenic 45.0%
GATCCTAGTAGTGATGTTCG+TGG + chr1_1:55428119-55428138 Msa0029850:CDS 45.0%
CAACCACGAACATCACTACT+AGG - chr1_1:55428125-55428144 None:intergenic 45.0%
CTAGTAGTGATGTTCGTGGT+TGG + chr1_1:55428123-55428142 Msa0029850:CDS 45.0%
AGTAGTGATGTTCGTGGTTG+GGG + chr1_1:55428125-55428144 Msa0029850:CDS 45.0%
!! TTTGATTTGCAGGGCTCATC+AGG + chr1_1:55428223-55428242 Msa0029850:CDS 45.0%
TTGTTGCAGGTTGTGGAAGA+CGG + chr1_1:55428336-55428355 Msa0029850:intron 45.0%
ACAACTTGCACTGAGGTAGA+GGG + chr1_1:55428585-55428604 Msa0029850:intron 45.0%
AAATGTGGCCAAAGTTGGCT+TGG + chr1_1:55428887-55428906 Msa0029850:intron 45.0%
CAATCTCTGCTTTACCCTTC+AGG + chr1_1:55428944-55428963 Msa0029850:intron 45.0%
ACATCGCTCGGTTGAGCTAA+GGG - chr1_1:55427206-55427225 None:intergenic 50.0%
CTCGAAAAGCCTCAGAAGGT+CGG - chr1_1:55427709-55427728 None:intergenic 50.0%
CGTACTCGAAAAGCCTCAGA+AGG - chr1_1:55427713-55427732 None:intergenic 50.0%
CCGTGTGAAGTTCCTGAATC+TGG + chr1_1:55428071-55428090 Msa0029850:CDS 50.0%
CACAACTTGCACTGAGGTAG+AGG + chr1_1:55428584-55428603 Msa0029850:intron 50.0%
ACGGAGTACAAAGCCTACAC+GGG - chr1_1:55428657-55428676 None:intergenic 50.0%
GACGGAGTACAAAGCCTACA+CGG - chr1_1:55428658-55428677 None:intergenic 50.0%
GGTGCTAAAGCATGACATGG+TGG + chr1_1:55428839-55428858 Msa0029850:intron 50.0%
AAGAGGAAGACCAGGGAAGC+AGG + chr1_1:55426527-55426546 Msa0029850:CDS 55.0%
GAAAGCTGAACCTGCTTCCC+TGG - chr1_1:55426540-55426559 None:intergenic 55.0%
! TGTCTAGGGCGGTTGCAGTT+AGG + chr1_1:55427014-55427033 Msa0029850:intron 55.0%
GACATCGCTCGGTTGAGCTA+AGG - chr1_1:55427207-55427226 None:intergenic 55.0%
!!! CTGAGGCTTTTCGAGTACGG+TGG + chr1_1:55427714-55427733 Msa0029850:CDS 55.0%
TCATCAATGAGAGCCGCCAC+AGG - chr1_1:55427978-55427997 None:intergenic 55.0%
GGTTGGGGAGAAAGCGAGCG+TGG + chr1_1:55428140-55428159 Msa0029850:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 55426233 55429225 55426233 ID=Msa0029850;Name=Msa0029850
chr1_1 mRNA 55426233 55429225 55426233 ID=Msa0029850-mRNA-1;Parent=Msa0029850;Name=Msa0029850-mRNA-1;_AED=0.20;_eAED=0.20;_QI=247|0.66|0.5|1|0.66|0.5|4|0|322
chr1_1 exon 55426233 55426654 55426233 ID=Msa0029850-mRNA-1:exon:16582;Parent=Msa0029850-mRNA-1
chr1_1 exon 55427685 55428244 55427685 ID=Msa0029850-mRNA-1:exon:16583;Parent=Msa0029850-mRNA-1
chr1_1 exon 55428345 55428538 55428345 ID=Msa0029850-mRNA-1:exon:16584;Parent=Msa0029850-mRNA-1
chr1_1 exon 55429186 55429225 55429186 ID=Msa0029850-mRNA-1:exon:16585;Parent=Msa0029850-mRNA-1
chr1_1 five_prime_UTR 55426233 55426479 55426233 ID=Msa0029850-mRNA-1:five_prime_utr;Parent=Msa0029850-mRNA-1
chr1_1 CDS 55426480 55426654 55426480 ID=Msa0029850-mRNA-1:cds;Parent=Msa0029850-mRNA-1
chr1_1 CDS 55427685 55428244 55427685 ID=Msa0029850-mRNA-1:cds;Parent=Msa0029850-mRNA-1
chr1_1 CDS 55428345 55428538 55428345 ID=Msa0029850-mRNA-1:cds;Parent=Msa0029850-mRNA-1
chr1_1 CDS 55429186 55429225 55429186 ID=Msa0029850-mRNA-1:cds;Parent=Msa0029850-mRNA-1
Gene Sequence

>Msa0029850

ATGGAACGTGGAGTTGTTGATGGTATTATCAATAGGTTACTTGAAGTAAGAGGAAGACCAGGGAAGCAGGTTCAGCTTTCTGAAGGAGAAATCAAACAGCTTTGTCTTGTCTCTAAAGATATCTTCATGAACCAGCCTAATCTCTTGAAACTAGAGGCACCTATTAAGATCTGTGGAGATATTCATGGTCAATATTCCGACCTTCTGAGGCTTTTCGAGTACGGTGGATTTCCTCCTCGCTCGAATTATTTATTTTTAGGAGACTATGTTGATCGCGGAAAACAAAGTCTAGAAACAATATGTCTTCTTCTGGCATATAAAATAAAATATCCTAAAAACTTTTTCCTTCTAAGGGGTAACCACGAATGTGCTTCCATAAACCGTATCTACGGATTTTATGATGAATGTAAAAGGAGATACAATGTGAAGCTATGGAAAATGTTTACAGATTGTTTCAATTGTTTGCCTGTGGCGGCTCTCATTGATGAAAAGATTATCTGTATGCATGGTGGACTCTCTCCTGAATTACACGATTTAAATCAGATAAAGAATTTGCGTCGTCCGTGTGAAGTTCCTGAATCTGGTCTATTATGTGACCTCTTATGGTCTGATCCTAGTAGTGATGTTCGTGGTTGGGGAGAAAGCGAGCGTGGAGTTTCATATACATTTGGTGCCGATAGGGTTAAAGAGTTTCTTCAAAAGCATGATCTTGATTTGATTTGCAGGGCTCATCAGGTTGTGGAAGACGGATACGAGTTCTTTGCGAATAGACAACTTGTAACAATCTTTTCAGCACCTAATTACTGTGGAGAATTTGACAATGCTGGTGCTATGATGACTGTAAATGAATCACTTGTGTGTTCTTTTCAAATACTGAAGCCTCTTGATAAAAAGCCTAAGTTTAGCTTTGGAAGCACAACTACAGTCAAATGCATCTATCATATTATTGGATCTCAAAGCAAAGTCTAA

Protein sequence

>Msa0029850

MERGVVDGIINRLLEVRGRPGKQVQLSEGEIKQLCLVSKDIFMNQPNLLKLEAPIKICGDIHGQYSDLLRLFEYGGFPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPKNFFLLRGNHECASINRIYGFYDECKRRYNVKLWKMFTDCFNCLPVAALIDEKIICMHGGLSPELHDLNQIKNLRRPCEVPESGLLCDLLWSDPSSDVRGWGESERGVSYTFGADRVKEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMTVNESLVCSFQILKPLDKKPKFSFGSTTTVKCIYHIIGSQSKV*