Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628230 | XP_013454724.1 | 84.567 | 635 | 15 | 3 | 1 | 588 | 1 | 599 | 0.0 | 997 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628230 | sp|M4IS90|CCL8_HUMLU | 59.967 | 602 | 139 | 5 | 37 | 573 | 26 | 590 | 0.0 | 693 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076630 | Msa0628230 | -0.805976 | 1.029326e-49 | -8.615850e-47 |
| Msa0114600 | Msa0628230 | -0.811253 | 7.680125e-51 | -8.615850e-47 |
| Msa0628230 | Msa0664270 | 0.800468 | 1.420854e-48 | -8.615850e-47 |
| Msa0628230 | Msa0930890 | -0.822141 | 2.776644e-53 | -8.615850e-47 |
| Msa0628230 | Msa1269250 | 0.908837 | 1.104611e-81 | -8.615850e-47 |
| Msa0628230 | Msa1367540 | -0.824095 | 9.715503e-54 | -8.615850e-47 |
| Msa0628230 | Msa1441220 | 0.814758 | 1.308892e-51 | -8.615850e-47 |
| Msa0127180 | Msa0628230 | -0.802721 | 4.904244e-49 | -8.615850e-47 |
| Msa0260800 | Msa0628230 | 0.811909 | 5.530090e-51 | -8.615850e-47 |
| Msa0277600 | Msa0628230 | -0.803045 | 4.204423e-49 | -8.615850e-47 |
| Msa0588020 | Msa0628230 | 0.957798 | 1.133255e-115 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628230 | MtrunA17_Chr4g0004101 | 87.135 | 342 | 8 | 1 | 247 | 588 | 26 | 331 | 0.0 | 604 |
| Msa0628230 | MtrunA17_Chr4g0004841 | 76.522 | 345 | 41 | 2 | 248 | 588 | 32 | 340 | 0.0 | 534 |
| Msa0628230 | MtrunA17_Chr4g0004091 | 93.077 | 260 | 12 | 1 | 1 | 254 | 1 | 260 | 2.00e-143 | 416 |
| Msa0628230 | MtrunA17_Chr4g0004831 | 74.118 | 255 | 65 | 1 | 1 | 254 | 1 | 255 | 2.06e-114 | 342 |
| Msa0628230 | MtrunA17_Chr6g0471921 | 25.829 | 573 | 322 | 18 | 49 | 584 | 1 | 507 | 1.47e-35 | 140 |
| Msa0628230 | MtrunA17_Chr4g0028411 | 23.905 | 548 | 315 | 17 | 75 | 580 | 47 | 534 | 1.31e-27 | 117 |
| Msa0628230 | MtrunA17_Chr4g0039791 | 24.887 | 442 | 247 | 14 | 184 | 587 | 166 | 560 | 5.92e-26 | 112 |
| Msa0628230 | MtrunA17_Chr5g0409791 | 24.113 | 423 | 231 | 11 | 205 | 587 | 195 | 567 | 7.96e-25 | 108 |
| Msa0628230 | MtrunA17_Chr1g0157401 | 24.688 | 401 | 222 | 12 | 221 | 587 | 205 | 559 | 2.13e-23 | 104 |
| Msa0628230 | MtrunA17_Chr1g0180541 | 24.390 | 410 | 220 | 12 | 211 | 580 | 181 | 540 | 2.22e-23 | 104 |
| Msa0628230 | MtrunA17_Chr5g0433221 | 26.327 | 452 | 222 | 17 | 183 | 583 | 153 | 544 | 5.12e-22 | 100 |
| Msa0628230 | MtrunA17_Chr1g0180551 | 23.877 | 423 | 219 | 14 | 208 | 580 | 244 | 613 | 1.24e-21 | 99.4 |
| Msa0628230 | MtrunA17_Chr6g0471311 | 25.750 | 400 | 217 | 16 | 221 | 583 | 190 | 546 | 2.32e-21 | 98.2 |
| Msa0628230 | MtrunA17_Chr1g0205711 | 26.984 | 315 | 161 | 6 | 220 | 466 | 258 | 571 | 6.52e-21 | 97.1 |
| Msa0628230 | MtrunA17_Chr8g0353341 | 22.563 | 359 | 190 | 10 | 212 | 529 | 199 | 510 | 7.66e-18 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628230 | AT3G16170.1 | 56.508 | 630 | 156 | 9 | 13 | 582 | 31 | 602 | 0.0 | 661 |
| Msa0628230 | AT3G48990.1 | 26.181 | 508 | 278 | 15 | 109 | 578 | 56 | 504 | 1.14e-37 | 146 |
| Msa0628230 | AT4G19010.1 | 23.951 | 405 | 218 | 11 | 220 | 584 | 204 | 558 | 1.54e-26 | 114 |
| Msa0628230 | AT1G20480.1 | 25.126 | 398 | 222 | 12 | 220 | 587 | 213 | 564 | 1.82e-25 | 111 |
| Msa0628230 | AT1G20510.1 | 24.069 | 403 | 221 | 12 | 220 | 586 | 189 | 542 | 5.22e-25 | 109 |
| Msa0628230 | AT1G30520.2 | 25.173 | 433 | 209 | 15 | 218 | 586 | 170 | 551 | 3.20e-24 | 107 |
| Msa0628230 | AT1G30520.1 | 25.173 | 433 | 209 | 15 | 218 | 586 | 170 | 551 | 3.20e-24 | 107 |
| Msa0628230 | AT1G21530.2 | 24.688 | 401 | 221 | 10 | 222 | 583 | 186 | 544 | 6.35e-24 | 106 |
| Msa0628230 | AT1G21530.1 | 25.743 | 404 | 211 | 12 | 222 | 583 | 186 | 542 | 1.69e-23 | 105 |
| Msa0628230 | AT1G20500.1 | 25.250 | 400 | 224 | 11 | 218 | 587 | 195 | 549 | 2.07e-23 | 104 |
| Msa0628230 | AT1G77240.1 | 24.306 | 432 | 229 | 15 | 198 | 586 | 167 | 543 | 1.14e-22 | 102 |
| Msa0628230 | AT1G21540.1 | 24.821 | 419 | 232 | 12 | 207 | 586 | 174 | 548 | 1.60e-22 | 102 |
| Msa0628230 | AT4G05160.1 | 22.167 | 406 | 236 | 10 | 215 | 587 | 185 | 543 | 5.93e-22 | 100 |
| Msa0628230 | AT1G68270.1 | 26.368 | 402 | 208 | 14 | 213 | 583 | 177 | 521 | 1.89e-20 | 95.5 |
| Msa0628230 | AT1G65880.1 | 24.766 | 428 | 203 | 15 | 217 | 583 | 183 | 552 | 6.74e-19 | 90.9 |
| Msa0628230 | AT5G27600.1 | 27.742 | 310 | 155 | 7 | 220 | 461 | 261 | 569 | 6.75e-19 | 91.3 |
| Msa0628230 | AT3G05970.1 | 27.302 | 315 | 150 | 7 | 220 | 461 | 261 | 569 | 4.44e-18 | 88.6 |
| Msa0628230 | AT1G20510.2 | 26.429 | 280 | 163 | 10 | 220 | 463 | 189 | 461 | 6.31e-18 | 87.4 |
| Msa0628230 | AT1G20510.3 | 25.795 | 283 | 168 | 11 | 220 | 463 | 189 | 468 | 7.86e-16 | 80.9 |
Find 144 sgRNAs with CRISPR-Local
Find 416 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATCGTTTAAAGAATAT+TGG | 0.225924 | 4_3:+8835044 | Msa0628230:CDS |
| CATCACTGGACATCGCTTAT+TGG | 0.257721 | 4_3:+8834249 | Msa0628230:CDS |
| ATAAACTATACATCTATATA+AGG | 0.257955 | 4_3:-8835998 | None:intergenic |
| GATTCCCATTCTTGCATAAC+AGG | 0.259251 | 4_3:-8834226 | None:intergenic |
| AAATGAGAAGCTCTTTATTC+TGG | 0.265798 | 4_3:+8836727 | Msa0628230:three_prime_UTR |
| AGTTTAGTGTCAGTGGAATT+TGG | 0.269993 | 4_3:+8833216 | Msa0628230:CDS |
| AGTAATGGACATTCACAAAA+TGG | 0.278392 | 4_3:+8832297 | Msa0628230:CDS |
| TATTAGGAACGGGCGGAATA+TGG | 0.284839 | 4_3:-8832257 | None:intergenic |
| GGAACTCATTGAATTGATTA+TGG | 0.292760 | 4_3:-8829687 | None:intergenic |
| ACCATTAGAACATTATTTAC+TGG | 0.293239 | 4_3:+8836631 | Msa0628230:three_prime_UTR |
| TATAACTGGTTTCAAAGAAT+TGG | 0.294208 | 4_3:-8836660 | None:intergenic |
| GTAAGGTGCAAGTTTATTCT+TGG | 0.296335 | 4_3:-8836196 | None:intergenic |
| TGTCTCAGAATGTTGCGTTT+TGG | 0.296796 | 4_3:+8836062 | Msa0628230:CDS |
| CTCTTCTCTGAGGAATTATT+AGG | 0.326160 | 4_3:-8832273 | None:intergenic |
| TCTTTATCTTGCTTCTCCTT+TGG | 0.336159 | 4_3:-8836132 | None:intergenic |
| ATCTCAATCTACAACATATA+TGG | 0.339248 | 4_3:+8831094 | Msa0628230:CDS |
| CACGATAACCTTGTATTAAC+CGG | 0.339824 | 4_3:-8833629 | None:intergenic |
| GCCAGTAAATAATGTTCTAA+TGG | 0.346326 | 4_3:-8836632 | None:intergenic |
| AACAAATTCGGCAGACGGTT+TGG | 0.361786 | 4_3:-8831723 | None:intergenic |
| GATAATTCTTCAAGGCTTAG+AGG | 0.370730 | 4_3:-8836165 | None:intergenic |
| CGCAAGGAACTTGCGTCTAA+TGG | 0.372250 | 4_3:+8833689 | Msa0628230:CDS |
| GCTTTGCGCTCGCCATTCAA+TGG | 0.384435 | 4_3:-8834458 | None:intergenic |
| CTCAACCTGTTATGCAAGAA+TGG | 0.387119 | 4_3:+8834221 | Msa0628230:CDS |
| CTGCAAGTCACTTCAGCATC+TGG | 0.388144 | 4_3:+8833666 | Msa0628230:CDS |
| GACAGTTGGATGCTGCAAAA+AGG | 0.392460 | 4_3:-8836043 | None:intergenic |
| CAATATTCTTTAAACGATGA+AGG | 0.393477 | 4_3:-8835043 | None:intergenic |
| CCGTCTGCCGAATTTGTTGC+TGG | 0.396519 | 4_3:+8831728 | Msa0628230:CDS |
| CATCGCTTATTGGAGCGATA+TGG | 0.400187 | 4_3:+8834259 | Msa0628230:CDS |
| AATTGAATCAGTAATATTAG+AGG | 0.407971 | 4_3:+8835924 | Msa0628230:CDS |
| GAGCATGAGAATGAAGAAAC+TGG | 0.410340 | 4_3:+8834995 | Msa0628230:CDS |
| AAGGAATCATTTACAGATGA+TGG | 0.412407 | 4_3:+8835380 | Msa0628230:CDS |
| ACTCTTCTCTAACATGAGTT+AGG | 0.413955 | 4_3:+8829524 | Msa0628230:five_prime_UTR |
| CCCAGTTGGATAATTCTTCA+AGG | 0.414735 | 4_3:-8836173 | None:intergenic |
| ACGCTCCCTCGCAATGCAAT+GGG | 0.419172 | 4_3:+8836445 | Msa0628230:CDS |
| GTAATGGACATTCACAAAAT+GGG | 0.425915 | 4_3:+8832298 | Msa0628230:CDS |
| TCTGAGGAATTATTAGGAAC+GGG | 0.426016 | 4_3:-8832267 | None:intergenic |
| CCTCTATGTGATGAATAATT+CGG | 0.426522 | 4_3:+8831820 | Msa0628230:CDS |
| GCCTTGAAGAATTATCCAAC+TGG | 0.429353 | 4_3:+8836172 | Msa0628230:CDS |
| GCTGAAGTGACTTGCAGCTC+AGG | 0.431638 | 4_3:-8833660 | None:intergenic |
| TGATGGAAGGGAGGCAGAAG+AGG | 0.435108 | 4_3:-8829737 | None:intergenic |
| GAGAGAATTTATGAGGATGA+TGG | 0.436298 | 4_3:-8829754 | None:intergenic |
| TCAAAGGCTTACGTTGTTGT+TGG | 0.440415 | 4_3:+8829606 | Msa0628230:five_prime_UTR |
| CCATGTCACCATACCTTGTA+AGG | 0.443424 | 4_3:-8836213 | None:intergenic |
| CTTTGAAACCAGTTATAAGA+TGG | 0.444084 | 4_3:+8836666 | Msa0628230:three_prime_UTR |
| AAATTGAGAGGAAGAGAAGA+TGG | 0.445403 | 4_3:-8829804 | None:intergenic |
| TGTGTATGAACAACTCCCTT+AGG | 0.445619 | 4_3:-8832524 | None:intergenic |
| GTTGAAATCCAGGGAAATCT+TGG | 0.451333 | 4_3:+8831677 | Msa0628230:intron |
| GATGGAAGGGAGGCAGAAGA+GGG | 0.452607 | 4_3:-8829736 | None:intergenic |
| GTACTTGCGACTTGGTTTAG+TGG | 0.452867 | 4_3:+8831752 | Msa0628230:CDS |
| AAGTACTCCAGCAACAAATT+CGG | 0.453295 | 4_3:-8831735 | None:intergenic |
| CTAACCTGCACACCAGGAAA+TGG | 0.458093 | 4_3:-8834497 | None:intergenic |
| ACATAGAGGAGCTCTACTTC+TGG | 0.459113 | 4_3:-8831806 | None:intergenic |
| TTGAATGGCGAGCGCAAAGC+AGG | 0.462485 | 4_3:+8834461 | Msa0628230:CDS |
| ATTTCTCCGTAGTCTTTGTC+CGG | 0.464124 | 4_3:-8836090 | None:intergenic |
| TTGTATACTAGCGGGACAAC+AGG | 0.464707 | 4_3:+8832497 | Msa0628230:CDS |
| CATACTTACTCCAGTGAATA+CGG | 0.469363 | 4_3:-8833294 | None:intergenic |
| TGGTTTCAAAGAATTGGCTT+TGG | 0.471364 | 4_3:-8836654 | None:intergenic |
| GACGCTCCCTCGCAATGCAA+TGG | 0.475140 | 4_3:+8836444 | Msa0628230:CDS |
| AAAACCATTTCCTGGTGTGC+AGG | 0.476589 | 4_3:+8834493 | Msa0628230:CDS |
| AATTGAGAGGAAGAGAAGAT+GGG | 0.482322 | 4_3:-8829803 | None:intergenic |
| TAAACTATACATCTATATAA+GGG | 0.483385 | 4_3:-8835997 | None:intergenic |
| AATCTTGGTGGAGCTCGAAT+AGG | 0.490823 | 4_3:+8831692 | Msa0628230:CDS |
| CATTCTTGCATAACAGGTTG+AGG | 0.493045 | 4_3:-8834220 | None:intergenic |
| ATTAACCGGGTGTACATAGT+TGG | 0.494598 | 4_3:-8833615 | None:intergenic |
| GAATAAACTTGCACCTTACA+AGG | 0.497001 | 4_3:+8836200 | Msa0628230:CDS |
| TCCTCAGAGAAGAGCAGTAA+TGG | 0.497489 | 4_3:+8832282 | Msa0628230:CDS |
| ATTTGGCTCAGGTGAAGATC+CGG | 0.499188 | 4_3:+8832466 | Msa0628230:intron |
| GATGATGGATACTTTAAGAC+TGG | 0.500522 | 4_3:+8835395 | Msa0628230:CDS |
| TTGCTGGAGTACTTGCGACT+TGG | 0.503599 | 4_3:+8831744 | Msa0628230:CDS |
| TCAACCTGTTATGCAAGAAT+GGG | 0.504435 | 4_3:+8834222 | Msa0628230:CDS |
| AATATTCTTTAAACGATGAA+GGG | 0.504764 | 4_3:-8835042 | None:intergenic |
| ACTGCAATTTGCGGTGAAGT+AGG | 0.505561 | 4_3:-8829652 | None:intergenic |
| GAATTTATGAGGATGATGGA+AGG | 0.507150 | 4_3:-8829750 | None:intergenic |
| CTCTGAGGAATTATTAGGAA+CGG | 0.512730 | 4_3:-8832268 | None:intergenic |
| ACCGTCGGAAAACCATTTCC+TGG | 0.512963 | 4_3:+8834485 | Msa0628230:CDS |
| CATTCTATTATTCAGATGTG+TGG | 0.513048 | 4_3:+8834184 | Msa0628230:intron |
| TCAGCTTTAGATCCTTCAGT+TGG | 0.515164 | 4_3:-8833260 | None:intergenic |
| AATTTATGAGGATGATGGAA+GGG | 0.517301 | 4_3:-8829749 | None:intergenic |
| GCATTGTCAAATCCATTGAA+TGG | 0.519766 | 4_3:+8834446 | Msa0628230:CDS |
| AAGCAAGAAGCTGCAGCTCA+TGG | 0.521419 | 4_3:+8831137 | Msa0628230:CDS |
| ACACAGAAGCATCCTTGCTC+AGG | 0.530891 | 4_3:+8832544 | Msa0628230:CDS |
| ACCTTCCCCATTGCATTGCG+AGG | 0.536567 | 4_3:-8836451 | None:intergenic |
| TCGATGTTTCTAGTTTGTCA+TGG | 0.542982 | 4_3:+8834424 | Msa0628230:intron |
| CGGGACAACAGGTAAACCTA+AGG | 0.543179 | 4_3:+8832508 | Msa0628230:CDS |
| AATACAAGGTTATCGTGCTA+TGG | 0.543439 | 4_3:+8833635 | Msa0628230:CDS |
| CAAGAATGGGAATCCATCAC+TGG | 0.546151 | 4_3:+8834235 | Msa0628230:CDS |
| GCTCAACTAACCTGCACACC+AGG | 0.548833 | 4_3:-8834503 | None:intergenic |
| ATTGAGAGGAAGAGAAGATG+GGG | 0.549638 | 4_3:-8829802 | None:intergenic |
| GCAGTTACTACGGATAAAGA+TGG | 0.552792 | 4_3:+8835422 | Msa0628230:CDS |
| TCAGTGGAATTTGGAAGAGA+TGG | 0.553750 | 4_3:+8833225 | Msa0628230:CDS |
| GACTGGAGATGCAGTTACTA+CGG | 0.556507 | 4_3:+8835412 | Msa0628230:CDS |
| CCGAATTATTCATCACATAG+AGG | 0.556775 | 4_3:-8831820 | None:intergenic |
| TTGCCGAAGTTTAGTGTCAG+TGG | 0.557108 | 4_3:+8833209 | Msa0628230:CDS |
| GAGCGCAAAGCAGGCACCGT+CGG | 0.558532 | 4_3:+8834470 | Msa0628230:CDS |
| GGTGCTATAACCGTATTCAC+TGG | 0.559650 | 4_3:+8833284 | Msa0628230:CDS |
| TAATAACAACTAACAACCAT+GGG | 0.559683 | 4_3:-8835969 | None:intergenic |
| TGGTTCTGAGAGAATTTATG+AGG | 0.561344 | 4_3:-8829761 | None:intergenic |
| TTTGTTGAGAGTCTTAAATG+AGG | 0.563825 | 4_3:-8829708 | None:intergenic |
| GGCTTACCGGACAAAGACTA+CGG | 0.566715 | 4_3:+8836084 | Msa0628230:CDS |
| CCTTCCCCATTGCATTGCGA+GGG | 0.567087 | 4_3:-8836450 | None:intergenic |
| ATGTACACCCGGTTAATACA+AGG | 0.574328 | 4_3:+8833621 | Msa0628230:CDS |
| CCCTCGCAATGCAATGGGGA+AGG | 0.576410 | 4_3:+8836450 | Msa0628230:CDS |
| ACGCAACATTCTGAGACAGT+TGG | 0.578421 | 4_3:-8836057 | None:intergenic |
| TCTGGATAGCTGAGTGCAAG+TGG | 0.578460 | 4_3:-8831788 | None:intergenic |
| CTAGTATACAAAATCAGTGC+CGG | 0.583079 | 4_3:-8832485 | None:intergenic |
| GAAATCCAGGGAAATCTTGG+TGG | 0.584081 | 4_3:+8831680 | Msa0628230:intron |
| CAATAAGCGATGTCCAGTGA+TGG | 0.591538 | 4_3:-8834248 | None:intergenic |
| TTATGAGGATGATGGAAGGG+AGG | 0.591893 | 4_3:-8829746 | None:intergenic |
| TTGTGCGATTATCGTGCCAA+AGG | 0.592723 | 4_3:+8836116 | Msa0628230:CDS |
| CCAGCAACAAATTCGGCAGA+CGG | 0.593121 | 4_3:-8831728 | None:intergenic |
| CCTTGAAGAATTATCCAACT+GGG | 0.594518 | 4_3:+8836173 | Msa0628230:CDS |
| CTTGCGACTTGGTTTAGTGG+AGG | 0.596081 | 4_3:+8831755 | Msa0628230:CDS |
| AAGATATCTAATCTCTTGTG+TGG | 0.596230 | 4_3:+8831224 | Msa0628230:CDS |
| TCACTTCAGCATCTGGCGCA+AGG | 0.597091 | 4_3:+8833673 | Msa0628230:CDS |
| TTAATAACAACTAACAACCA+TGG | 0.599778 | 4_3:-8835970 | None:intergenic |
| AGATGATGAACGAAATTGAG+AGG | 0.602992 | 4_3:-8829816 | None:intergenic |
| GCAATTTGCGGTGAAGTAGG+TGG | 0.604783 | 4_3:-8829649 | None:intergenic |
| CGTGAGTCATATCCAACTGA+AGG | 0.605168 | 4_3:+8833248 | Msa0628230:CDS |
| TACCAACTCGACTAATCGTG+TGG | 0.608337 | 4_3:+8836419 | Msa0628230:CDS |
| ACTGAAGGATCTAAAGCTGA+TGG | 0.608878 | 4_3:+8833263 | Msa0628230:CDS |
| TAATGGACATTCACAAAATG+GGG | 0.610443 | 4_3:+8832299 | Msa0628230:CDS |
| TTGAGAGGAAGAGAAGATGG+GGG | 0.615724 | 4_3:-8829801 | None:intergenic |
| TCATAAAGCATACCTGAGCA+AGG | 0.617886 | 4_3:-8832556 | None:intergenic |
| AAGTTTATTCTTGGCCCAGT+TGG | 0.618670 | 4_3:-8836187 | None:intergenic |
| TCCCACACGATTAGTCGAGT+TGG | 0.618951 | 4_3:-8836421 | None:intergenic |
| TCCATTACTGCTCTTCTCTG+AGG | 0.625180 | 4_3:-8832283 | None:intergenic |
| ATTCCACTGACACTAAACTT+CGG | 0.629573 | 4_3:-8833212 | None:intergenic |
| GAGAATGAAGAAACTGGAGC+TGG | 0.632470 | 4_3:+8835001 | Msa0628230:CDS |
| AATTCTTCAAGGCTTAGAGG+AGG | 0.633061 | 4_3:-8836162 | None:intergenic |
| TCAATCTACAACATATATGG+AGG | 0.639302 | 4_3:+8831097 | Msa0628230:CDS |
| GGGACAACAGGTAAACCTAA+GGG | 0.643408 | 4_3:+8832509 | Msa0628230:CDS |
| TCAGTAATATTAGAGGCAAG+TGG | 0.650011 | 4_3:+8835931 | Msa0628230:CDS |
| ACGATAACCTTGTATTAACC+GGG | 0.652167 | 4_3:-8833628 | None:intergenic |
| ACATACATACACAAACTCAA+AGG | 0.658155 | 4_3:+8829590 | Msa0628230:five_prime_UTR |
| TTACAAGCAACTCATCTCGT+CGG | 0.660566 | 4_3:+8831196 | Msa0628230:CDS |
| AGAATATTGGAAACTTCCTG+AGG | 0.673119 | 4_3:+8835057 | Msa0628230:CDS |
| ACCAACTCGACTAATCGTGT+GGG | 0.673721 | 4_3:+8836420 | Msa0628230:CDS |
| AGGTTCCAACTATGTACACC+CGG | 0.678598 | 4_3:+8833610 | Msa0628230:intron |
| GAGGAATTATTAGGAACGGG+CGG | 0.680276 | 4_3:-8832264 | None:intergenic |
| CTTGTGTGGAAATGATGTGA+AGG | 0.681768 | 4_3:+8831238 | Msa0628230:CDS |
| CGCTCCCTCGCAATGCAATG+GGG | 0.686193 | 4_3:+8836446 | Msa0628230:CDS |
| AACGCAGATATAATCAAGAG+CGG | 0.692623 | 4_3:+8835877 | Msa0628230:CDS |
| GCAGATATAATCAAGAGCGG+TGG | 0.692898 | 4_3:+8835880 | Msa0628230:CDS |
| AACAGGTTGAGGAAGTGCAG+AGG | 0.696442 | 4_3:-8834209 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAATTAAACAAAAC+AGG | - | chr4_3:8829967-8829986 | None:intergenic | 10.0% |
| !!! | TATTTTAAAAAAAAAGTTCA+TGG | + | chr4_3:8830319-8830338 | Msa0628230:intron | 10.0% |
| !!! | ATTTTAAAAAAAAAGTTCAT+GGG | + | chr4_3:8830320-8830339 | Msa0628230:intron | 10.0% |
| !! | ATTTGAAAATTTCATATAAA+AGG | - | chr4_3:8831958-8831977 | None:intergenic | 10.0% |
| !! | CTTAATAAAAATTTGATTAT+AGG | + | chr4_3:8832155-8832174 | Msa0628230:intron | 10.0% |
| !!! | TTATAATTTTTCTTGATTTT+AGG | + | chr4_3:8832758-8832777 | Msa0628230:intron | 10.0% |
| !!! | TCTAAATAATTTTTTAATGA+AGG | + | chr4_3:8833590-8833609 | Msa0628230:intron | 10.0% |
| !!! | ATAAGTTTAATCTTATTTTT+AGG | + | chr4_3:8836765-8836784 | Msa0628230:three_prime_UTR | 10.0% |
| !!! | AAAATGGATTTTTTTTACTA+TGG | + | chr4_3:8829984-8830003 | Msa0628230:intron | 15.0% |
| !!! | AATTTGATTTAATATGTTGT+TGG | + | chr4_3:8830065-8830084 | Msa0628230:intron | 15.0% |
| !!! | ATTTGATTTAATATGTTGTT+GGG | + | chr4_3:8830066-8830085 | Msa0628230:intron | 15.0% |
| !! | ATATTAAGTATTCAATTTCA+TGG | - | chr4_3:8830411-8830430 | None:intergenic | 15.0% |
| !! | TAAATTATTCTTATAAGTGT+TGG | + | chr4_3:8830464-8830483 | Msa0628230:intron | 15.0% |
| !!! | TTTTGTAATTTCTCTTATTT+TGG | + | chr4_3:8830531-8830550 | Msa0628230:intron | 15.0% |
| !!! | TTTGTAATTTCTCTTATTTT+GGG | + | chr4_3:8830532-8830551 | Msa0628230:intron | 15.0% |
| !!! | TCTTTTTTTACCTTTTATTA+TGG | + | chr4_3:8831492-8831511 | Msa0628230:intron | 15.0% |
| !!! | AAAATTGATATTTTCTTTTC+TGG | - | chr4_3:8833100-8833119 | None:intergenic | 15.0% |
| !! | AAAAACTTATATGTTCAAAA+TGG | - | chr4_3:8833148-8833167 | None:intergenic | 15.0% |
| !!! | AAATTTATATTTAGGATGTA+TGG | + | chr4_3:8835471-8835490 | Msa0628230:intron | 15.0% |
| !! | TAAACTATACATCTATATAA+GGG | - | chr4_3:8836000-8836019 | None:intergenic | 15.0% |
| !! | ATAAACTATACATCTATATA+AGG | - | chr4_3:8836001-8836020 | None:intergenic | 15.0% |
| !! | TATAAAAAACATACAAACAA+TGG | - | chr4_3:8836239-8836258 | None:intergenic | 15.0% |
| !!! | TTGTTTTTGTTACTGATAAT+GGG | + | chr4_3:8829872-8829891 | Msa0628230:intron | 20.0% |
| !!! | TTTTTGCTCATATGTTTTAT+TGG | + | chr4_3:8830014-8830033 | Msa0628230:intron | 20.0% |
| !!! | TTTTGCTCATATGTTTTATT+GGG | + | chr4_3:8830015-8830034 | Msa0628230:intron | 20.0% |
| !!! | TTTGATTTAATATGTTGTTG+GGG | + | chr4_3:8830067-8830086 | Msa0628230:intron | 20.0% |
| !!! | TACAATTTCAAACACTATTT+TGG | - | chr4_3:8830280-8830299 | None:intergenic | 20.0% |
| !!! | AAATAGTGTTTGAAATTGTA+AGG | + | chr4_3:8830280-8830299 | Msa0628230:intron | 20.0% |
| !! | TAGCTTATAATTAACAGATT+TGG | + | chr4_3:8830659-8830678 | Msa0628230:intron | 20.0% |
| !! | AGCTTATAATTAACAGATTT+GGG | + | chr4_3:8830660-8830679 | Msa0628230:intron | 20.0% |
| !! | TAACTAAATAAATGTATCTG+CGG | + | chr4_3:8830882-8830901 | Msa0628230:intron | 20.0% |
| !! | ATCTAATGAATTCATATGTA+AGG | + | chr4_3:8831040-8831059 | Msa0628230:intron | 20.0% |
| !! | AGATTGAGATACTATATAAT+AGG | - | chr4_3:8831084-8831103 | None:intergenic | 20.0% |
| !!! | TTTGCTATTTCCATAATAAA+AGG | - | chr4_3:8831505-8831524 | None:intergenic | 20.0% |
| !! | GAGTAACTTTATATAAATGT+GGG | - | chr4_3:8831535-8831554 | None:intergenic | 20.0% |
| !! | AGAGTAACTTTATATAAATG+TGG | - | chr4_3:8831536-8831555 | None:intergenic | 20.0% |
| !! | TTTGTTTAGTCAATCATTTA+TGG | + | chr4_3:8831653-8831672 | Msa0628230:intron | 20.0% |
| !!! | ATATGAAATTTTCAAATAGC+TGG | + | chr4_3:8831961-8831980 | Msa0628230:intron | 20.0% |
| !!! | ATCATATATACTTTTCACAA+AGG | - | chr4_3:8832005-8832024 | None:intergenic | 20.0% |
| !! | TTCAAAAATAATCTTACCTA+CGG | + | chr4_3:8832035-8832054 | Msa0628230:intron | 20.0% |
| !! | AAAGCATAATTAAAGCATAA+AGG | - | chr4_3:8832124-8832143 | None:intergenic | 20.0% |
| !!! | TATGCTTTAATTATGCTTTT+TGG | + | chr4_3:8832125-8832144 | Msa0628230:intron | 20.0% |
| !! | TGCATATAAAAAAACTTTCA+TGG | - | chr4_3:8832857-8832876 | None:intergenic | 20.0% |
| !! | AGATTATATACAAAAAACCA+AGG | - | chr4_3:8833373-8833392 | None:intergenic | 20.0% |
| !!! | ATGATTGTAAAACATGTTTT+CGG | + | chr4_3:8833553-8833572 | Msa0628230:intron | 20.0% |
| !!! | AATAAAAAAGGGTATATTAG+TGG | - | chr4_3:8834653-8834672 | None:intergenic | 20.0% |
| !! | TCATATATTACTTTCTTGAA+TGG | - | chr4_3:8834824-8834843 | None:intergenic | 20.0% |
| !! | AATATTCTTTAAACGATGAA+GGG | - | chr4_3:8835045-8835064 | None:intergenic | 20.0% |
| !! | ATATCAATTTCAGTTAAAGA+CGG | + | chr4_3:8835274-8835293 | Msa0628230:intron | 20.0% |
| !! | ACGTAAGGAAATTTATATTT+AGG | + | chr4_3:8835463-8835482 | Msa0628230:intron | 20.0% |
| !!! | GAATAATTTTACAGTCTTAT+TGG | + | chr4_3:8835772-8835791 | Msa0628230:intron | 20.0% |
| !! | TAGAATTTAGATTATGATGA+CGG | + | chr4_3:8835812-8835831 | Msa0628230:intron | 20.0% |
| !! | AATTGAATCAGTAATATTAG+AGG | + | chr4_3:8835924-8835943 | Msa0628230:CDS | 20.0% |
| !!! | GTATGTTTTTTATATGTATG+TGG | + | chr4_3:8836245-8836264 | Msa0628230:intron | 20.0% |
| !! | AATCTATGATAAATGTAAGA+TGG | - | chr4_3:8836351-8836370 | None:intergenic | 20.0% |
| !! | TCGCAAAATATTATTTAGAA+AGG | + | chr4_3:8836530-8836549 | Msa0628230:intron | 20.0% |
| !!! | AGTTTAATCTTATTTTTAGG+AGG | + | chr4_3:8836768-8836787 | Msa0628230:three_prime_UTR | 20.0% |
| !!! | GTTTAATCTTATTTTTAGGA+GGG | + | chr4_3:8836769-8836788 | Msa0628230:three_prime_UTR | 20.0% |
| !!! | TTTAATCTTATTTTTAGGAG+GGG | + | chr4_3:8836770-8836789 | Msa0628230:three_prime_UTR | 20.0% |
| ! | CTATAAAAAACTGCAATTTG+CGG | - | chr4_3:8829664-8829683 | None:intergenic | 25.0% |
| !!! | CTTGTTTTTGTTACTGATAA+TGG | + | chr4_3:8829871-8829890 | Msa0628230:intron | 25.0% |
| ! | TAATTAAACAAAACAGGACA+AGG | - | chr4_3:8829961-8829980 | None:intergenic | 25.0% |
| !!! | TTTGCTCATATGTTTTATTG+GGG | + | chr4_3:8830016-8830035 | Msa0628230:intron | 25.0% |
| ! | ATCTCATGCATGATTAATAA+TGG | + | chr4_3:8830233-8830252 | Msa0628230:intron | 25.0% |
| ! | AAAAAAAAGTTCATGGGAAT+TGG | + | chr4_3:8830326-8830345 | Msa0628230:intron | 25.0% |
| !! | TTGAAAAGTACACTAACATA+TGG | - | chr4_3:8830382-8830401 | None:intergenic | 25.0% |
| !!! | TATTCTTATAAGTGTTGGTA+TGG | + | chr4_3:8830469-8830488 | Msa0628230:intron | 25.0% |
| ! | GCTTATAATTAACAGATTTG+GGG | + | chr4_3:8830661-8830680 | Msa0628230:intron | 25.0% |
| !! | TGAACAATAAGCACTATTTT+TGG | - | chr4_3:8830706-8830725 | None:intergenic | 25.0% |
| ! | ATGTTGAAAGTTGAAATCTA+AGG | - | chr4_3:8830802-8830821 | None:intergenic | 25.0% |
| !! | CTATTTGGTATTTTACTCAA+GGG | - | chr4_3:8830968-8830987 | None:intergenic | 25.0% |
| !! | TCTATTTGGTATTTTACTCA+AGG | - | chr4_3:8830969-8830988 | None:intergenic | 25.0% |
| ! | TGAACAAGAAGATATCTATT+TGG | - | chr4_3:8830983-8831002 | None:intergenic | 25.0% |
| ! | AAATAGATATCTTCTTGTTC+AGG | + | chr4_3:8830982-8831001 | Msa0628230:intron | 25.0% |
| ! | ATCTCAATCTACAACATATA+TGG | + | chr4_3:8831094-8831113 | Msa0628230:CDS | 25.0% |
| ! | CATTTGACCAATATGATATA+CGG | + | chr4_3:8831331-8831350 | Msa0628230:intron | 25.0% |
| !!! | CTTATTTTCATAAGTTCTCT+AGG | + | chr4_3:8831444-8831463 | Msa0628230:intron | 25.0% |
| !! | ATTTTCCATTGACATTATCT+TGG | + | chr4_3:8831930-8831949 | Msa0628230:intron | 25.0% |
| ! | TCAAAAATAATCTTACCTAC+GGG | + | chr4_3:8832036-8832055 | Msa0628230:intron | 25.0% |
| !! | AAATAGTCCAACTAATTTGT+TGG | - | chr4_3:8832086-8832105 | None:intergenic | 25.0% |
| !!! | AAATTGAGATGAGGTTTTAT+TGG | - | chr4_3:8832235-8832254 | None:intergenic | 25.0% |
| ! | AATATGGAAAAATTGAGATG+AGG | - | chr4_3:8832244-8832263 | None:intergenic | 25.0% |
| !!! | ACATTTTCAGCTTCTAAAAA+TGG | + | chr4_3:8832378-8832397 | Msa0628230:intron | 25.0% |
| !!! | CTTTTGTTTTTCGTATCATT+TGG | + | chr4_3:8832449-8832468 | Msa0628230:intron | 25.0% |
| ! | CATGTACTTCATATATGTTA+AGG | - | chr4_3:8832984-8833003 | None:intergenic | 25.0% |
| !! | AATATCAATTTTCGTACAAG+TGG | + | chr4_3:8833108-8833127 | Msa0628230:intron | 25.0% |
| !! | TCAAAATGGATACTATTTTG+AGG | - | chr4_3:8833134-8833153 | None:intergenic | 25.0% |
| !!! | AAGATAATTTATTTTCAGGC+AGG | - | chr4_3:8833400-8833419 | None:intergenic | 25.0% |
| !!! | GGGAAAGATAATTTATTTTC+AGG | - | chr4_3:8833404-8833423 | None:intergenic | 25.0% |
| ! | GAAAATAAATTATCTTTCCC+TGG | + | chr4_3:8833404-8833423 | Msa0628230:intron | 25.0% |
| ! | AAATTACAGTTCGTTGTAAA+TGG | - | chr4_3:8833531-8833550 | None:intergenic | 25.0% |
| ! | CCAAAGATTAAAATGTTTGA+AGG | - | chr4_3:8833731-8833750 | None:intergenic | 25.0% |
| !!! | CCTTCAAACATTTTAATCTT+TGG | + | chr4_3:8833728-8833747 | Msa0628230:intron | 25.0% |
| !! | ATCTTTGGAAAGAAGATAAA+TGG | + | chr4_3:8833743-8833762 | Msa0628230:intron | 25.0% |
| !! | ACTTCATCAATGTTTCTTTT+AGG | + | chr4_3:8833820-8833839 | Msa0628230:intron | 25.0% |
| !! | CTTCATCAATGTTTCTTTTA+GGG | + | chr4_3:8833821-8833840 | Msa0628230:intron | 25.0% |
| ! | AAACATCGATACAATAAGTA+AGG | - | chr4_3:8834413-8834432 | None:intergenic | 25.0% |
| ! | CAATATTCTTTAAACGATGA+AGG | - | chr4_3:8835046-8835065 | None:intergenic | 25.0% |
| ! | CTTCATCGTTTAAAGAATAT+TGG | + | chr4_3:8835044-8835063 | Msa0628230:CDS | 25.0% |
| !!! | CACATTATTTTAGTTACTTG+AGG | + | chr4_3:8835222-8835241 | Msa0628230:intron | 25.0% |
| !! | AAGATTCTAAGGATAGAAAA+CGG | + | chr4_3:8835300-8835319 | Msa0628230:intron | 25.0% |
| !!! | AATTTGTATTTTTTCCATGC+AGG | + | chr4_3:8835352-8835371 | Msa0628230:intron | 25.0% |
| !! | GATGGATATTTCATCATTTT+AGG | + | chr4_3:8835440-8835459 | Msa0628230:CDS | 25.0% |
| ! | AACCTAAATTGCTAATAACT+AGG | + | chr4_3:8835735-8835754 | Msa0628230:intron | 25.0% |
| ! | ATCCTAGTTATTAGCAATTT+AGG | - | chr4_3:8835740-8835759 | None:intergenic | 25.0% |
| !!! | TCATTTTTCGACTTTTTATC+AGG | + | chr4_3:8835850-8835869 | Msa0628230:intron | 25.0% |
| ! | TAATAACAACTAACAACCAT+GGG | - | chr4_3:8835972-8835991 | None:intergenic | 25.0% |
| ! | TTAATAACAACTAACAACCA+TGG | - | chr4_3:8835973-8835992 | None:intergenic | 25.0% |
| !! | AGAATGATTTGTGTTTACAA+CGG | - | chr4_3:8836497-8836516 | None:intergenic | 25.0% |
| !!! | AATGGTATTTACTTTTCTGA+AGG | - | chr4_3:8836617-8836636 | None:intergenic | 25.0% |
| ! | ACCATTAGAACATTATTTAC+TGG | + | chr4_3:8836631-8836650 | Msa0628230:three_prime_UTR | 25.0% |
| !! | TATAACTGGTTTCAAAGAAT+TGG | - | chr4_3:8836663-8836682 | None:intergenic | 25.0% |
| !!! | TTAATCTTATTTTTAGGAGG+GGG | + | chr4_3:8836771-8836790 | Msa0628230:three_prime_UTR | 25.0% |
| ACATACATACACAAACTCAA+AGG | + | chr4_3:8829590-8829609 | Msa0628230:five_prime_UTR | 30.0% | |
| GGAACTCATTGAATTGATTA+TGG | - | chr4_3:8829690-8829709 | None:intergenic | 30.0% | |
| TTTGTTGAGAGTCTTAAATG+AGG | - | chr4_3:8829711-8829730 | None:intergenic | 30.0% | |
| !! | AATTTATGAGGATGATGGAA+GGG | - | chr4_3:8829752-8829771 | None:intergenic | 30.0% |
| !!! | GGTGGTGAATTTTTTTATCT+TGG | + | chr4_3:8830037-8830056 | Msa0628230:intron | 30.0% |
| ! | ATGTCTTCAATTAGAAGTGT+TGG | + | chr4_3:8830191-8830210 | Msa0628230:intron | 30.0% |
| ! | TTAATAATGGCTGCATGTTT+TGG | + | chr4_3:8830246-8830265 | Msa0628230:intron | 30.0% |
| TGAATTGGGATTTACTAAGA+GGG | + | chr4_3:8830588-8830607 | Msa0628230:intron | 30.0% | |
| TTCAACAACCATTAGAAGAA+AGG | - | chr4_3:8830616-8830635 | None:intergenic | 30.0% | |
| ! | AACATTGATAATTAGTGCTC+TGG | + | chr4_3:8830761-8830780 | Msa0628230:intron | 30.0% |
| TTAGTTAATGTTCAACCCAA+CGG | - | chr4_3:8830869-8830888 | None:intergenic | 30.0% | |
| TCAATCTACAACATATATGG+AGG | + | chr4_3:8831097-8831116 | Msa0628230:CDS | 30.0% | |
| AAGATATCTAATCTCTTGTG+TGG | + | chr4_3:8831224-8831243 | Msa0628230:CDS | 30.0% | |
| TCTTACAAAGGGAATAGTAA+AGG | - | chr4_3:8831286-8831305 | None:intergenic | 30.0% | |
| ACGCAACTTAATCTTACAAA+GGG | - | chr4_3:8831297-8831316 | None:intergenic | 30.0% | |
| TACGCAACTTAATCTTACAA+AGG | - | chr4_3:8831298-8831317 | None:intergenic | 30.0% | |
| !! | TTTCATAAGTTCTCTAGGAT+AGG | + | chr4_3:8831449-8831468 | Msa0628230:intron | 30.0% |
| CCTCTATGTGATGAATAATT+CGG | + | chr4_3:8831820-8831839 | Msa0628230:CDS | 30.0% | |
| ATGAATAATTCGGTATGCTT+TGG | + | chr4_3:8831830-8831849 | Msa0628230:intron | 30.0% | |
| CTTGTGAACATTAAGAACTA+AGG | + | chr4_3:8831900-8831919 | Msa0628230:intron | 30.0% | |
| TATGTTGCCAACAAATTAGT+TGG | + | chr4_3:8832076-8832095 | Msa0628230:intron | 30.0% | |
| !! | AGTAATGGACATTCACAAAA+TGG | + | chr4_3:8832297-8832316 | Msa0628230:CDS | 30.0% |
| !! | GTAATGGACATTCACAAAAT+GGG | + | chr4_3:8832298-8832317 | Msa0628230:CDS | 30.0% |
| ! | TAATGGACATTCACAAAATG+GGG | + | chr4_3:8832299-8832318 | Msa0628230:CDS | 30.0% |
| ! | TTGATCTTTCAATGTTTTCC+GGG | - | chr4_3:8832347-8832366 | None:intergenic | 30.0% |
| ! | CTTGATCTTTCAATGTTTTC+CGG | - | chr4_3:8832348-8832367 | None:intergenic | 30.0% |
| GACAAAGTAGAATACTATCT+TGG | + | chr4_3:8832400-8832419 | Msa0628230:intron | 30.0% | |
| ATATATGAAGTACATGTCCA+CGG | + | chr4_3:8832988-8833007 | Msa0628230:intron | 30.0% | |
| AAGGAAAAAGAAAATTACCG+TGG | - | chr4_3:8833052-8833071 | None:intergenic | 30.0% | |
| TTGCTATGTAAGAAGTGAAA+AGG | - | chr4_3:8833071-8833090 | None:intergenic | 30.0% | |
| ! | AGAATCTAATGTCTTGTTCA+AGG | + | chr4_3:8833178-8833197 | Msa0628230:intron | 30.0% |
| CATTGAGAAGATCTATGATA+TGG | + | chr4_3:8833332-8833351 | Msa0628230:intron | 30.0% | |
| !! | CTTTTAGGGATTGTTTAGAT+TGG | + | chr4_3:8833835-8833854 | Msa0628230:intron | 30.0% |
| ! | ATGTCATAAGCTATTTCCAT+AGG | - | chr4_3:8833871-8833890 | None:intergenic | 30.0% |
| AATAAGCTGAAAACAGCATA+TGG | - | chr4_3:8833896-8833915 | None:intergenic | 30.0% | |
| !!! | CAGATTTTTGAGATTGAGAA+TGG | - | chr4_3:8834155-8834174 | None:intergenic | 30.0% |
| CACACATCTGAATAATAGAA+TGG | - | chr4_3:8834186-8834205 | None:intergenic | 30.0% | |
| CATTCTATTATTCAGATGTG+TGG | + | chr4_3:8834184-8834203 | Msa0628230:intron | 30.0% | |
| TTTCTGTGATTAGAAGCAAA+TGG | - | chr4_3:8834540-8834559 | None:intergenic | 30.0% | |
| TTGCTTCTAATCACAGAAAA+TGG | + | chr4_3:8834541-8834560 | Msa0628230:intron | 30.0% | |
| CGTGGAGATACAATAAAAAA+GGG | - | chr4_3:8834664-8834683 | None:intergenic | 30.0% | |
| TCGTGGAGATACAATAAAAA+AGG | - | chr4_3:8834665-8834684 | None:intergenic | 30.0% | |
| TCCACTAACTATTACTTGAA+AGG | + | chr4_3:8834689-8834708 | Msa0628230:intron | 30.0% | |
| ! | TCCTTTCAAGTAATAGTTAG+TGG | - | chr4_3:8834693-8834712 | None:intergenic | 30.0% |
| ! | CTCATATTAAGTGTTGTTCA+AGG | - | chr4_3:8834790-8834809 | None:intergenic | 30.0% |
| TTAATGCTCAATGTGAAAGA+TGG | + | chr4_3:8834920-8834939 | Msa0628230:intron | 30.0% | |
| !! | TGAGGACATAATTTGTTCTA+AGG | + | chr4_3:8835240-8835259 | Msa0628230:intron | 30.0% |
| ! | GTTTTCTATCCTTAGAATCT+TGG | - | chr4_3:8835301-8835320 | None:intergenic | 30.0% |
| AAGGAATCATTTACAGATGA+TGG | + | chr4_3:8835380-8835399 | Msa0628230:CDS | 30.0% | |
| !!! | TTTCATCATTTTAGGACGTA+AGG | + | chr4_3:8835448-8835467 | Msa0628230:intron | 30.0% |
| ACATCCTAGGAATTCAAATT+TGG | - | chr4_3:8835518-8835537 | None:intergenic | 30.0% | |
| AAATGAAAAGATCCATCTCA+AGG | - | chr4_3:8835544-8835563 | None:intergenic | 30.0% | |
| ! | TCTTGTTGGAAGATTCATTT+TGG | - | chr4_3:8835569-8835588 | None:intergenic | 30.0% |
| ! | TATTTTGCGATGAAATGACA+AGG | - | chr4_3:8836520-8836539 | None:intergenic | 30.0% |
| TAAAAAAGAGCTGAAGAAGT+TGG | + | chr4_3:8836589-8836608 | Msa0628230:CDS | 30.0% | |
| GCCAGTAAATAATGTTCTAA+TGG | - | chr4_3:8836635-8836654 | None:intergenic | 30.0% | |
| !! | CTTTGAAACCAGTTATAAGA+TGG | + | chr4_3:8836666-8836685 | Msa0628230:three_prime_UTR | 30.0% |
| ! | GATTTTCACCATCTTATAAC+TGG | - | chr4_3:8836677-8836696 | None:intergenic | 30.0% |
| AAATGAGAAGCTCTTTATTC+TGG | + | chr4_3:8836727-8836746 | Msa0628230:three_prime_UTR | 30.0% | |
| !!! | GAATGTAGTTTTGTCTATCT+AGG | + | chr4_3:8836840-8836859 | Msa0628230:three_prime_UTR | 30.0% |
| ACTCTTCTCTAACATGAGTT+AGG | + | chr4_3:8829524-8829543 | Msa0628230:five_prime_UTR | 35.0% | |
| !! | GAATTTATGAGGATGATGGA+AGG | - | chr4_3:8829753-8829772 | None:intergenic | 35.0% |
| GAGAGAATTTATGAGGATGA+TGG | - | chr4_3:8829757-8829776 | None:intergenic | 35.0% | |
| !! | TGGTTCTGAGAGAATTTATG+AGG | - | chr4_3:8829764-8829783 | None:intergenic | 35.0% |
| AATTGAGAGGAAGAGAAGAT+GGG | - | chr4_3:8829806-8829825 | None:intergenic | 35.0% | |
| AAATTGAGAGGAAGAGAAGA+TGG | - | chr4_3:8829807-8829826 | None:intergenic | 35.0% | |
| AGATGATGAACGAAATTGAG+AGG | - | chr4_3:8829819-8829838 | None:intergenic | 35.0% | |
| !! | AATTAGAAGTGTTGGTGCTA+CGG | + | chr4_3:8830199-8830218 | Msa0628230:intron | 35.0% |
| TTCATGGGAATTGGAAATTG+TGG | + | chr4_3:8830335-8830354 | Msa0628230:intron | 35.0% | |
| TCATGGGAATTGGAAATTGT+GGG | + | chr4_3:8830336-8830355 | Msa0628230:intron | 35.0% | |
| ! | ACAGACAGTTTGCAGATTTT+GGG | + | chr4_3:8830501-8830520 | Msa0628230:intron | 35.0% |
| TGAAATTGCATGGCATTGTT+AGG | - | chr4_3:8830563-8830582 | None:intergenic | 35.0% | |
| !! | ATTCAGCTTCTGAAATTGCA+TGG | - | chr4_3:8830573-8830592 | None:intergenic | 35.0% |
| TGCAATTTCAGAAGCTGAAT+TGG | + | chr4_3:8830573-8830592 | Msa0628230:intron | 35.0% | |
| GCAATTTCAGAAGCTGAATT+GGG | + | chr4_3:8830574-8830593 | Msa0628230:intron | 35.0% | |
| CTGAATTGGGATTTACTAAG+AGG | + | chr4_3:8830587-8830606 | Msa0628230:intron | 35.0% | |
| !!! | ACTATTTTTGGAGTTCACGT+GGG | - | chr4_3:8830694-8830713 | None:intergenic | 35.0% |
| TTGTTCAAAGCTGAGTTGTT+TGG | + | chr4_3:8830719-8830738 | Msa0628230:intron | 35.0% | |
| CTTTCAACATTTCAGAACCT+AGG | + | chr4_3:8830812-8830831 | Msa0628230:intron | 35.0% | |
| TTTACGCTCTTAATTGTCCT+AGG | - | chr4_3:8830832-8830851 | None:intergenic | 35.0% | |
| ! | GGACAATTAAGAGCGTAAAA+AGG | + | chr4_3:8830833-8830852 | Msa0628230:intron | 35.0% |
| ! | AAGAGCGTAAAAAGGTCAAT+TGG | + | chr4_3:8830841-8830860 | Msa0628230:intron | 35.0% |
| GGAATAGTAAAGGAATGTCA+AGG | - | chr4_3:8831276-8831295 | None:intergenic | 35.0% | |
| GGAACTTCCGTATATCATAT+TGG | - | chr4_3:8831341-8831360 | None:intergenic | 35.0% | |
| TGATATACGGAAGTTCCTAT+AGG | + | chr4_3:8831344-8831363 | Msa0628230:intron | 35.0% | |
| TTGAATGCTTAGTCTATTGC+TGG | + | chr4_3:8831578-8831597 | Msa0628230:intron | 35.0% | |
| TGAATGCTTAGTCTATTGCT+GGG | + | chr4_3:8831579-8831598 | Msa0628230:intron | 35.0% | |
| ! | ATTTATGGCGTTGAAATCCA+GGG | + | chr4_3:8831668-8831687 | Msa0628230:intron | 35.0% |
| AAGTACTCCAGCAACAAATT+CGG | - | chr4_3:8831738-8831757 | None:intergenic | 35.0% | |
| CCGAATTATTCATCACATAG+AGG | - | chr4_3:8831823-8831842 | None:intergenic | 35.0% | |
| AGGTACCAAGATAATGTCAA+TGG | - | chr4_3:8831938-8831957 | None:intergenic | 35.0% | |
| TCTGAGGAATTATTAGGAAC+GGG | - | chr4_3:8832270-8832289 | None:intergenic | 35.0% | |
| ! | CTCTGAGGAATTATTAGGAA+CGG | - | chr4_3:8832271-8832290 | None:intergenic | 35.0% |
| ! | CTCTTCTCTGAGGAATTATT+AGG | - | chr4_3:8832276-8832295 | None:intergenic | 35.0% |
| !! | TTTTTCGTATCATTTGGCTC+AGG | + | chr4_3:8832455-8832474 | Msa0628230:intron | 35.0% |
| CTAGTATACAAAATCAGTGC+CGG | - | chr4_3:8832488-8832507 | None:intergenic | 35.0% | |
| !!! | GCACTGATTTTGTATACTAG+CGG | + | chr4_3:8832488-8832507 | Msa0628230:CDS | 35.0% |
| !!! | CACTGATTTTGTATACTAGC+GGG | + | chr4_3:8832489-8832508 | Msa0628230:CDS | 35.0% |
| CTTTCATGGATATGATGTAG+TGG | - | chr4_3:8832843-8832862 | None:intergenic | 35.0% | |
| TATATGAAGTACATGTCCAC+GGG | + | chr4_3:8832989-8833008 | Msa0628230:intron | 35.0% | |
| ATTCCACTGACACTAAACTT+CGG | - | chr4_3:8833215-8833234 | None:intergenic | 35.0% | |
| AGTTTAGTGTCAGTGGAATT+TGG | + | chr4_3:8833216-8833235 | Msa0628230:CDS | 35.0% | |
| CATACTTACTCCAGTGAATA+CGG | - | chr4_3:8833297-8833316 | None:intergenic | 35.0% | |
| CTTCGTATGATTATACTCCA+GGG | - | chr4_3:8833424-8833443 | None:intergenic | 35.0% | |
| TCTTCGTATGATTATACTCC+AGG | - | chr4_3:8833425-8833444 | None:intergenic | 35.0% | |
| CAACAAAGAACACCATCATA+TGG | - | chr4_3:8833459-8833478 | None:intergenic | 35.0% | |
| ACGATAACCTTGTATTAACC+GGG | - | chr4_3:8833631-8833650 | None:intergenic | 35.0% | |
| CACGATAACCTTGTATTAAC+CGG | - | chr4_3:8833632-8833651 | None:intergenic | 35.0% | |
| AATACAAGGTTATCGTGCTA+TGG | + | chr4_3:8833635-8833654 | Msa0628230:CDS | 35.0% | |
| GATTGGATTATTTGAGCCTA+TGG | + | chr4_3:8833852-8833871 | Msa0628230:intron | 35.0% | |
| ! | AGCTATCTTTGAAGAGCTTA+TGG | - | chr4_3:8833920-8833939 | None:intergenic | 35.0% |
| ACTAAGTTGTTTATCCAAGC+AGG | + | chr4_3:8834059-8834078 | Msa0628230:intron | 35.0% | |
| CTAAGTTGTTTATCCAAGCA+GGG | + | chr4_3:8834060-8834079 | Msa0628230:intron | 35.0% | |
| !! | GTATGTTGATTTACCATGCA+TGG | + | chr4_3:8834091-8834110 | Msa0628230:intron | 35.0% |
| TCAACCTGTTATGCAAGAAT+GGG | + | chr4_3:8834222-8834241 | Msa0628230:CDS | 35.0% | |
| !! | TCGATGTTTCTAGTTTGTCA+TGG | + | chr4_3:8834424-8834443 | Msa0628230:intron | 35.0% |
| GCATTGTCAAATCCATTGAA+TGG | + | chr4_3:8834446-8834465 | Msa0628230:CDS | 35.0% | |
| ! | AATAGTTAGTGGAGTATTCG+TGG | - | chr4_3:8834682-8834701 | None:intergenic | 35.0% |
| TGTGAAAGATGGTGATATCT+TGG | + | chr4_3:8834931-8834950 | Msa0628230:intron | 35.0% | |
| AGAATATTGGAAACTTCCTG+AGG | + | chr4_3:8835057-8835076 | Msa0628230:CDS | 35.0% | |
| GTGCGATGTTATGATTGTAA+TGG | - | chr4_3:8835205-8835224 | None:intergenic | 35.0% | |
| ! | TTTTTCCATGCAGGTAACAA+AGG | + | chr4_3:8835361-8835380 | Msa0628230:intron | 35.0% |
| !! | GATGATGGATACTTTAAGAC+TGG | + | chr4_3:8835395-8835414 | Msa0628230:CDS | 35.0% |
| GCAACCAAATTTGAATTCCT+AGG | + | chr4_3:8835511-8835530 | Msa0628230:intron | 35.0% | |
| ATCTATGACATGGATCTTGT+TGG | - | chr4_3:8835583-8835602 | None:intergenic | 35.0% | |
| ! | GATTCGACTAGGTTTTACAT+TGG | + | chr4_3:8835600-8835619 | Msa0628230:intron | 35.0% |
| ATGCATATCAAGGCTAACAT+AGG | + | chr4_3:8835675-8835694 | Msa0628230:intron | 35.0% | |
| AACGCAGATATAATCAAGAG+CGG | + | chr4_3:8835877-8835896 | Msa0628230:CDS | 35.0% | |
| TCAGTAATATTAGAGGCAAG+TGG | + | chr4_3:8835931-8835950 | Msa0628230:CDS | 35.0% | |
| TCTTTATCTTGCTTCTCCTT+TGG | - | chr4_3:8836135-8836154 | None:intergenic | 35.0% | |
| GATAATTCTTCAAGGCTTAG+AGG | - | chr4_3:8836168-8836187 | None:intergenic | 35.0% | |
| CCTTGAAGAATTATCCAACT+GGG | + | chr4_3:8836173-8836192 | Msa0628230:CDS | 35.0% | |
| GTAAGGTGCAAGTTTATTCT+TGG | - | chr4_3:8836199-8836218 | None:intergenic | 35.0% | |
| GAATAAACTTGCACCTTACA+AGG | + | chr4_3:8836200-8836219 | Msa0628230:CDS | 35.0% | |
| AATGTAAGATGGAGCATATC+AGG | - | chr4_3:8836340-8836359 | None:intergenic | 35.0% | |
| TGTGTTTACAACGGCATATA+AGG | - | chr4_3:8836488-8836507 | None:intergenic | 35.0% | |
| ! | TGTTCTCTGTTTGAAATTGC+AGG | + | chr4_3:8836562-8836581 | Msa0628230:intron | 35.0% |
| ! | TGGTTTCAAAGAATTGGCTT+TGG | - | chr4_3:8836657-8836676 | None:intergenic | 35.0% |
| !! | TTTTTCACACGTTGGTTGGT+TGG | - | chr4_3:8829555-8829574 | None:intergenic | 40.0% |
| ! | TGTACGTGTTTTTCACACGT+TGG | - | chr4_3:8829563-8829582 | None:intergenic | 40.0% |
| TCAAAGGCTTACGTTGTTGT+TGG | + | chr4_3:8829606-8829625 | Msa0628230:five_prime_UTR | 40.0% | |
| GGGTGTAAGAAGAAAAATGG+TGG | - | chr4_3:8829784-8829803 | None:intergenic | 40.0% | |
| ! | TGGGGGTGTAAGAAGAAAAA+TGG | - | chr4_3:8829787-8829806 | None:intergenic | 40.0% |
| ATTGAGAGGAAGAGAAGATG+GGG | - | chr4_3:8829805-8829824 | None:intergenic | 40.0% | |
| !! | GCTCATATGTTTTATTGGGG+TGG | + | chr4_3:8830019-8830038 | Msa0628230:intron | 40.0% |
| ! | TTGGGGTGTCTTTACTTATG+AGG | + | chr4_3:8830084-8830103 | Msa0628230:intron | 40.0% |
| GTGTCTTTACTTATGAGGCA+TGG | + | chr4_3:8830089-8830108 | Msa0628230:intron | 40.0% | |
| ! | GACAGACAGTTTGCAGATTT+TGG | + | chr4_3:8830500-8830519 | Msa0628230:intron | 40.0% |
| AGAGGGTTCCTTTCTTCTAA+TGG | + | chr4_3:8830605-8830624 | Msa0628230:intron | 40.0% | |
| !!! | CACTATTTTTGGAGTTCACG+TGG | - | chr4_3:8830695-8830714 | None:intergenic | 40.0% |
| ! | AAAAGGTCAATTGGTTCCGT+TGG | + | chr4_3:8830850-8830869 | Msa0628230:intron | 40.0% |
| ! | AAAGGTCAATTGGTTCCGTT+GGG | + | chr4_3:8830851-8830870 | Msa0628230:intron | 40.0% |
| ! | TGCGGTGATTTTTCTCTACA+GGG | + | chr4_3:8830900-8830919 | Msa0628230:intron | 40.0% |
| ! | TTTTCTCTACAGGGTCATCT+TGG | + | chr4_3:8830909-8830928 | Msa0628230:intron | 40.0% |
| ! | CAGGCTTTATAATGCAGACA+TGG | + | chr4_3:8831001-8831020 | Msa0628230:intron | 40.0% |
| TTACAAGCAACTCATCTCGT+CGG | + | chr4_3:8831196-8831215 | Msa0628230:CDS | 40.0% | |
| CTTGTGTGGAAATGATGTGA+AGG | + | chr4_3:8831238-8831257 | Msa0628230:CDS | 40.0% | |
| GTTGGCAGATAAACTCCTAT+AGG | - | chr4_3:8831362-8831381 | None:intergenic | 40.0% | |
| ACTGTTTGTGGAAACAGCTT+AGG | + | chr4_3:8831397-8831416 | Msa0628230:intron | 40.0% | |
| ! | CATTTATGGCGTTGAAATCC+AGG | + | chr4_3:8831667-8831686 | Msa0628230:intron | 40.0% |
| GTTGAAATCCAGGGAAATCT+TGG | + | chr4_3:8831677-8831696 | Msa0628230:intron | 40.0% | |
| ACCTACGGGAAGAAAAAAGT+TGG | + | chr4_3:8832050-8832069 | Msa0628230:intron | 40.0% | |
| ! | TGATGCAGACAGTATTTTCC+CGG | + | chr4_3:8832326-8832345 | Msa0628230:CDS | 40.0% |
| TGTGTATGAACAACTCCCTT+AGG | - | chr4_3:8832527-8832546 | None:intergenic | 40.0% | |
| TCATAAAGCATACCTGAGCA+AGG | - | chr4_3:8832559-8832578 | None:intergenic | 40.0% | |
| TCCAAACCTTGACAAAAGCA+TGG | + | chr4_3:8832781-8832800 | Msa0628230:intron | 40.0% | |
| ! | CCAAACCTTGACAAAAGCAT+GGG | + | chr4_3:8832782-8832801 | Msa0628230:intron | 40.0% |
| ! | CAAACCTTGACAAAAGCATG+GGG | + | chr4_3:8832783-8832802 | Msa0628230:intron | 40.0% |
| ! | AAACCTTGACAAAAGCATGG+GGG | + | chr4_3:8832784-8832803 | Msa0628230:intron | 40.0% |
| GTAAACCATTGAAAATCCCG+TGG | - | chr4_3:8833008-8833027 | None:intergenic | 40.0% | |
| ! | CGGGATTTTCAATGGTTTAC+TGG | + | chr4_3:8833008-8833027 | Msa0628230:intron | 40.0% |
| TCAGTGGAATTTGGAAGAGA+TGG | + | chr4_3:8833225-8833244 | Msa0628230:CDS | 40.0% | |
| !! | TCAGCTTTAGATCCTTCAGT+TGG | - | chr4_3:8833263-8833282 | None:intergenic | 40.0% |
| ! | ACTGAAGGATCTAAAGCTGA+TGG | + | chr4_3:8833263-8833282 | Msa0628230:CDS | 40.0% |
| ATCATACGAAGACCGCATAT+CGG | + | chr4_3:8833433-8833452 | Msa0628230:intron | 40.0% | |
| ATTAACCGGGTGTACATAGT+TGG | - | chr4_3:8833618-8833637 | None:intergenic | 40.0% | |
| ATGTACACCCGGTTAATACA+AGG | + | chr4_3:8833621-8833640 | Msa0628230:CDS | 40.0% | |
| GGTAAATCAACATACCACTG+TGG | - | chr4_3:8834086-8834105 | None:intergenic | 40.0% | |
| AATTGCAAGTGAACCATGCA+TGG | - | chr4_3:8834107-8834126 | None:intergenic | 40.0% | |
| CATTCTTGCATAACAGGTTG+AGG | - | chr4_3:8834223-8834242 | None:intergenic | 40.0% | |
| CTCAACCTGTTATGCAAGAA+TGG | + | chr4_3:8834221-8834240 | Msa0628230:CDS | 40.0% | |
| GATTCCCATTCTTGCATAAC+AGG | - | chr4_3:8834229-8834248 | None:intergenic | 40.0% | |
| ACTACGCAACTTCATCATTC+GGG | - | chr4_3:8834896-8834915 | None:intergenic | 40.0% | |
| CACTACGCAACTTCATCATT+CGG | - | chr4_3:8834897-8834916 | None:intergenic | 40.0% | |
| GAGCATGAGAATGAAGAAAC+TGG | + | chr4_3:8834995-8835014 | Msa0628230:CDS | 40.0% | |
| TAACATTATGCAAGCACCTC+AGG | - | chr4_3:8835076-8835095 | None:intergenic | 40.0% | |
| TGGTGCATCATAACATCGTA+AGG | - | chr4_3:8835185-8835204 | None:intergenic | 40.0% | |
| AAAGACGGTCCAAGATTCTA+AGG | + | chr4_3:8835289-8835308 | Msa0628230:intron | 40.0% | |
| TGATTCCTTTGTTACCTGCA+TGG | - | chr4_3:8835369-8835388 | None:intergenic | 40.0% | |
| GCAGTTACTACGGATAAAGA+TGG | + | chr4_3:8835422-8835441 | Msa0628230:CDS | 40.0% | |
| CATCTCAAGGATAACATCCT+AGG | - | chr4_3:8835531-8835550 | None:intergenic | 40.0% | |
| CTAGGATGTTATCCTTGAGA+TGG | + | chr4_3:8835529-8835548 | Msa0628230:intron | 40.0% | |
| TCCATGTCATAGATTCGACT+AGG | + | chr4_3:8835589-8835608 | Msa0628230:intron | 40.0% | |
| ACCTAGTCGAATCTATGACA+TGG | - | chr4_3:8835593-8835612 | None:intergenic | 40.0% | |
| TAAAAGGAGAGGGTTGAGTT+AGG | - | chr4_3:8835636-8835655 | None:intergenic | 40.0% | |
| ATATCAAGGCTAACATAGGC+AGG | + | chr4_3:8835679-8835698 | Msa0628230:intron | 40.0% | |
| ! | TGTCTCAGAATGTTGCGTTT+TGG | + | chr4_3:8836062-8836081 | Msa0628230:CDS | 40.0% |
| ! | GTCTCAGAATGTTGCGTTTT+GGG | + | chr4_3:8836063-8836082 | Msa0628230:CDS | 40.0% |
| ATTTCTCCGTAGTCTTTGTC+CGG | - | chr4_3:8836093-8836112 | None:intergenic | 40.0% | |
| AATTCTTCAAGGCTTAGAGG+AGG | - | chr4_3:8836165-8836184 | None:intergenic | 40.0% | |
| GCCTTGAAGAATTATCCAAC+TGG | + | chr4_3:8836172-8836191 | Msa0628230:CDS | 40.0% | |
| CCCAGTTGGATAATTCTTCA+AGG | - | chr4_3:8836176-8836195 | None:intergenic | 40.0% | |
| AAGTTTATTCTTGGCCCAGT+TGG | - | chr4_3:8836190-8836209 | None:intergenic | 40.0% | |
| AACTTGCACCTTACAAGGTA+TGG | + | chr4_3:8836205-8836224 | Msa0628230:intron | 40.0% | |
| ! | CGTGTTTTTCACACGTTGGT+TGG | - | chr4_3:8829559-8829578 | None:intergenic | 45.0% |
| ACTGCAATTTGCGGTGAAGT+AGG | - | chr4_3:8829655-8829674 | None:intergenic | 45.0% | |
| !! | TTATGAGGATGATGGAAGGG+AGG | - | chr4_3:8829749-8829768 | None:intergenic | 45.0% |
| TTGAGAGGAAGAGAAGATGG+GGG | - | chr4_3:8829804-8829823 | None:intergenic | 45.0% | |
| ! | CTGCGGTGATTTTTCTCTAC+AGG | + | chr4_3:8830899-8830918 | Msa0628230:intron | 45.0% |
| GTTTCCACAAACAGTCTCAG+CGG | - | chr4_3:8831392-8831411 | None:intergenic | 45.0% | |
| GAAATCCAGGGAAATCTTGG+TGG | + | chr4_3:8831680-8831699 | Msa0628230:intron | 45.0% | |
| AATCTTGGTGGAGCTCGAAT+AGG | + | chr4_3:8831692-8831711 | Msa0628230:CDS | 45.0% | |
| AACAAATTCGGCAGACGGTT+TGG | - | chr4_3:8831726-8831745 | None:intergenic | 45.0% | |
| !! | GTACTTGCGACTTGGTTTAG+TGG | + | chr4_3:8831752-8831771 | Msa0628230:CDS | 45.0% |
| ACATAGAGGAGCTCTACTTC+TGG | - | chr4_3:8831809-8831828 | None:intergenic | 45.0% | |
| !!! | GCCAACTTTTTTCTTCCCGT+AGG | - | chr4_3:8832054-8832073 | None:intergenic | 45.0% |
| TATTAGGAACGGGCGGAATA+TGG | - | chr4_3:8832260-8832279 | None:intergenic | 45.0% | |
| GAGGAATTATTAGGAACGGG+CGG | - | chr4_3:8832267-8832286 | None:intergenic | 45.0% | |
| TCCTCAGAGAAGAGCAGTAA+TGG | + | chr4_3:8832282-8832301 | Msa0628230:CDS | 45.0% | |
| TCCATTACTGCTCTTCTCTG+AGG | - | chr4_3:8832286-8832305 | None:intergenic | 45.0% | |
| ! | ATTTGGCTCAGGTGAAGATC+CGG | + | chr4_3:8832466-8832485 | Msa0628230:intron | 45.0% |
| TTGTATACTAGCGGGACAAC+AGG | + | chr4_3:8832497-8832516 | Msa0628230:CDS | 45.0% | |
| GGGACAACAGGTAAACCTAA+GGG | + | chr4_3:8832509-8832528 | Msa0628230:CDS | 45.0% | |
| ! | CCCATGCTTTTGTCAAGGTT+TGG | - | chr4_3:8832785-8832804 | None:intergenic | 45.0% |
| ! | ATACCCCCATGCTTTTGTCA+AGG | - | chr4_3:8832790-8832809 | None:intergenic | 45.0% |
| ! | CATGTCCACGGGATTTTCAA+TGG | + | chr4_3:8833000-8833019 | Msa0628230:intron | 45.0% |
| TTGCCGAAGTTTAGTGTCAG+TGG | + | chr4_3:8833209-8833228 | Msa0628230:CDS | 45.0% | |
| CGTGAGTCATATCCAACTGA+AGG | + | chr4_3:8833248-8833267 | Msa0628230:CDS | 45.0% | |
| ! | GGTGCTATAACCGTATTCAC+TGG | + | chr4_3:8833284-8833303 | Msa0628230:CDS | 45.0% |
| GGTTCATTCTCACAAGACCT+TGG | + | chr4_3:8833353-8833372 | Msa0628230:intron | 45.0% | |
| ACCATCATATGGCCGATATG+CGG | - | chr4_3:8833448-8833467 | None:intergenic | 45.0% | |
| AGGTTCCAACTATGTACACC+CGG | + | chr4_3:8833610-8833629 | Msa0628230:intron | 45.0% | |
| CAAGAATGGGAATCCATCAC+TGG | + | chr4_3:8834235-8834254 | Msa0628230:CDS | 45.0% | |
| CAATAAGCGATGTCCAGTGA+TGG | - | chr4_3:8834251-8834270 | None:intergenic | 45.0% | |
| CATCACTGGACATCGCTTAT+TGG | + | chr4_3:8834249-8834268 | Msa0628230:CDS | 45.0% | |
| CATCGCTTATTGGAGCGATA+TGG | + | chr4_3:8834259-8834278 | Msa0628230:CDS | 45.0% | |
| CTACGCAACTTCATCATTCG+GGG | - | chr4_3:8834895-8834914 | None:intergenic | 45.0% | |
| ! | GGCTTTTCTGTATGCATGAC+AGG | + | chr4_3:8834952-8834971 | Msa0628230:intron | 45.0% |
| GAGAATGAAGAAACTGGAGC+TGG | + | chr4_3:8835001-8835020 | Msa0628230:CDS | 45.0% | |
| GACTGGAGATGCAGTTACTA+CGG | + | chr4_3:8835412-8835431 | Msa0628230:CDS | 45.0% | |
| ! | CTCAACCCTCTCCTTTTATC+CGG | + | chr4_3:8835638-8835657 | Msa0628230:intron | 45.0% |
| ! | CTTTTATCCGGACCTGAGTT+CGG | + | chr4_3:8835650-8835669 | Msa0628230:intron | 45.0% |
| TGATATGCATAGCCGAACTC+AGG | - | chr4_3:8835665-8835684 | None:intergenic | 45.0% | |
| GAGTTCGGCTATGCATATCA+AGG | + | chr4_3:8835665-8835684 | Msa0628230:intron | 45.0% | |
| GCAGATATAATCAAGAGCGG+TGG | + | chr4_3:8835880-8835899 | Msa0628230:CDS | 45.0% | |
| ! | GCTACGATTTTCTCATCCCA+TGG | + | chr4_3:8835953-8835972 | Msa0628230:CDS | 45.0% |
| GACAGTTGGATGCTGCAAAA+AGG | - | chr4_3:8836046-8836065 | None:intergenic | 45.0% | |
| !! | ACGCAACATTCTGAGACAGT+TGG | - | chr4_3:8836060-8836079 | None:intergenic | 45.0% |
| !! | ATGTTGCGTTTTGGGCTTAC+CGG | + | chr4_3:8836071-8836090 | Msa0628230:CDS | 45.0% |
| TTGTGCGATTATCGTGCCAA+AGG | + | chr4_3:8836116-8836135 | Msa0628230:CDS | 45.0% | |
| CCATGTCACCATACCTTGTA+AGG | - | chr4_3:8836216-8836235 | None:intergenic | 45.0% | |
| CCTTACAAGGTATGGTGACA+TGG | + | chr4_3:8836213-8836232 | Msa0628230:intron | 45.0% | |
| ! | GCATATCAAGTGAGAGCATG+AGG | + | chr4_3:8836269-8836288 | Msa0628230:intron | 45.0% |
| ! | TATCAAGTGAGAGCATGAGG+AGG | + | chr4_3:8836272-8836291 | Msa0628230:intron | 45.0% |
| TGAGGAGGAGGAAGATTCTA+CGG | + | chr4_3:8836287-8836306 | Msa0628230:intron | 45.0% | |
| TACCAACTCGACTAATCGTG+TGG | + | chr4_3:8836419-8836438 | Msa0628230:CDS | 45.0% | |
| ACCAACTCGACTAATCGTGT+GGG | + | chr4_3:8836420-8836439 | Msa0628230:CDS | 45.0% | |
| !!! | TTTTGTTTAATTAAAAAAAA+TGG | + | chr4_3:8829968-8829987 | Msa0628230:intron | 5.0% |
| GCAATTTGCGGTGAAGTAGG+TGG | - | chr4_3:8829652-8829671 | None:intergenic | 50.0% | |
| AAGCAAGAAGCTGCAGCTCA+TGG | + | chr4_3:8831137-8831156 | Msa0628230:CDS | 50.0% | |
| AGTCTCAGCGGTGCTTATGT+TGG | - | chr4_3:8831380-8831399 | None:intergenic | 50.0% | |
| CCAGCAACAAATTCGGCAGA+CGG | - | chr4_3:8831731-8831750 | None:intergenic | 50.0% | |
| ! | TTGCTGGAGTACTTGCGACT+TGG | + | chr4_3:8831744-8831763 | Msa0628230:CDS | 50.0% |
| !! | CTTGCGACTTGGTTTAGTGG+AGG | + | chr4_3:8831755-8831774 | Msa0628230:CDS | 50.0% |
| TCTGGATAGCTGAGTGCAAG+TGG | - | chr4_3:8831791-8831810 | None:intergenic | 50.0% | |
| CGGGACAACAGGTAAACCTA+AGG | + | chr4_3:8832508-8832527 | Msa0628230:CDS | 50.0% | |
| !! | ACACAGAAGCATCCTTGCTC+AGG | + | chr4_3:8832544-8832563 | Msa0628230:CDS | 50.0% |
| ACCGCATATCGGCCATATGA+TGG | + | chr4_3:8833444-8833463 | Msa0628230:intron | 50.0% | |
| CTGCAAGTCACTTCAGCATC+TGG | + | chr4_3:8833666-8833685 | Msa0628230:CDS | 50.0% | |
| CGCAAGGAACTTGCGTCTAA+TGG | + | chr4_3:8833689-8833708 | Msa0628230:CDS | 50.0% | |
| ! | AACAGGTTGAGGAAGTGCAG+AGG | - | chr4_3:8834212-8834231 | None:intergenic | 50.0% |
| CTAACCTGCACACCAGGAAA+TGG | - | chr4_3:8834500-8834519 | None:intergenic | 50.0% | |
| CAGGTCCGGATAAAAGGAGA+GGG | - | chr4_3:8835646-8835665 | None:intergenic | 50.0% | |
| TCAGGTCCGGATAAAAGGAG+AGG | - | chr4_3:8835647-8835666 | None:intergenic | 50.0% | |
| CGAACTCAGGTCCGGATAAA+AGG | - | chr4_3:8835652-8835671 | None:intergenic | 50.0% | |
| GGCTTACCGGACAAAGACTA+CGG | + | chr4_3:8836084-8836103 | Msa0628230:CDS | 50.0% | |
| ! | TCCCACACGATTAGTCGAGT+TGG | - | chr4_3:8836424-8836443 | None:intergenic | 50.0% |
| GATGGAAGGGAGGCAGAAGA+GGG | - | chr4_3:8829739-8829758 | None:intergenic | 55.0% | |
| TGATGGAAGGGAGGCAGAAG+AGG | - | chr4_3:8829740-8829759 | None:intergenic | 55.0% | |
| AGCACCGCTGAGACTGTTTG+TGG | + | chr4_3:8831385-8831404 | Msa0628230:intron | 55.0% | |
| GAGCTCCACCAAGATTTCCC+TGG | - | chr4_3:8831688-8831707 | None:intergenic | 55.0% | |
| !! | CCGTCTGCCGAATTTGTTGC+TGG | + | chr4_3:8831728-8831747 | Msa0628230:CDS | 55.0% |
| ! | GCTGAAGTGACTTGCAGCTC+AGG | - | chr4_3:8833663-8833682 | None:intergenic | 55.0% |
| TCACTTCAGCATCTGGCGCA+AGG | + | chr4_3:8833673-8833692 | Msa0628230:CDS | 55.0% | |
| TTATCCAAGCAGGGCCACAG+TGG | + | chr4_3:8834069-8834088 | Msa0628230:intron | 55.0% | |
| GCTTTGCGCTCGCCATTCAA+TGG | - | chr4_3:8834461-8834480 | None:intergenic | 55.0% | |
| TTGAATGGCGAGCGCAAAGC+AGG | + | chr4_3:8834461-8834480 | Msa0628230:CDS | 55.0% | |
| GCTCAACTAACCTGCACACC+AGG | - | chr4_3:8834506-8834525 | None:intergenic | 55.0% | |
| TGCATAGCCGAACTCAGGTC+CGG | - | chr4_3:8835660-8835679 | None:intergenic | 55.0% | |
| ! | CAAGTGAGAGCATGAGGAGG+AGG | + | chr4_3:8836275-8836294 | Msa0628230:intron | 55.0% |
| ACGCTCCCTCGCAATGCAAT+GGG | + | chr4_3:8836445-8836464 | Msa0628230:CDS | 55.0% | |
| CCTTCCCCATTGCATTGCGA+GGG | - | chr4_3:8836453-8836472 | None:intergenic | 55.0% | |
| ACCTTCCCCATTGCATTGCG+AGG | - | chr4_3:8836454-8836473 | None:intergenic | 55.0% | |
| TTACTGGCCCCTCTCTACGC+AGG | + | chr4_3:8833024-8833043 | Msa0628230:intron | 60.0% | |
| CGTGGAACCTGCGTAGAGAG+GGG | - | chr4_3:8833034-8833053 | None:intergenic | 60.0% | |
| CCGTGGAACCTGCGTAGAGA+GGG | - | chr4_3:8833035-8833054 | None:intergenic | 60.0% | |
| CCCTCTCTACGCAGGTTCCA+CGG | + | chr4_3:8833032-8833051 | Msa0628230:intron | 60.0% | |
| ACCGTGGAACCTGCGTAGAG+AGG | - | chr4_3:8833036-8833055 | None:intergenic | 60.0% | |
| CATACCACTGTGGCCCTGCT+TGG | - | chr4_3:8834076-8834095 | None:intergenic | 60.0% | |
| GACGCTCCCTCGCAATGCAA+TGG | + | chr4_3:8836444-8836463 | Msa0628230:CDS | 60.0% | |
| CGCTCCCTCGCAATGCAATG+GGG | + | chr4_3:8836446-8836465 | Msa0628230:CDS | 60.0% | |
| CCCTCGCAATGCAATGGGGA+AGG | + | chr4_3:8836450-8836469 | Msa0628230:CDS | 60.0% | |
| ! | GAGCGCAAAGCAGGCACCGT+CGG | + | chr4_3:8834470-8834489 | Msa0628230:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 8829495 | 8836962 | 8829495 | ID=Msa0628230;Name=Msa0628230 |
| chr4_3 | mRNA | 8829495 | 8836962 | 8829495 | ID=Msa0628230-mRNA-1;Parent=Msa0628230;Name=Msa0628230-mRNA-1;_AED=0.09;_eAED=0.09;_QI=206|0.92|0.92|1|0.92|0.78|14|334|588 |
| chr4_3 | exon | 8829495 | 8829845 | 8829495 | ID=Msa0628230-mRNA-1:exon:2555;Parent=Msa0628230-mRNA-1 |
| chr4_3 | exon | 8831093 | 8831259 | 8831093 | ID=Msa0628230-mRNA-1:exon:2556;Parent=Msa0628230-mRNA-1 |
| chr4_3 | exon | 8831689 | 8831841 | 8831689 | ID=Msa0628230-mRNA-1:exon:2557;Parent=Msa0628230-mRNA-1 |
| chr4_3 | exon | 8832177 | 8832366 | 8832177 | ID=Msa0628230-mRNA-1:exon:2558;Parent=Msa0628230-mRNA-1 |
| chr4_3 | exon | 8832477 | 8832565 | 8832477 | ID=Msa0628230-mRNA-1:exon:2559;Parent=Msa0628230-mRNA-1 |
| chr4_3 | exon | 8833200 | 8833307 | 8833200 | ID=Msa0628230-mRNA-1:exon:2560;Parent=Msa0628230-mRNA-1 |
| chr4_3 | exon | 8833612 | 8833710 | 8833612 | ID=Msa0628230-mRNA-1:exon:2561;Parent=Msa0628230-mRNA-1 |
| chr4_3 | exon | 8834199 | 8834291 | 8834199 | ID=Msa0628230-mRNA-1:exon:2562;Parent=Msa0628230-mRNA-1 |
| chr4_3 | exon | 8834437 | 8834514 | 8834437 | ID=Msa0628230-mRNA-1:exon:2563;Parent=Msa0628230-mRNA-1 |
| chr4_3 | exon | 8834974 | 8835078 | 8834974 | ID=Msa0628230-mRNA-1:exon:2564;Parent=Msa0628230-mRNA-1 |
| chr4_3 | exon | 8835374 | 8835464 | 8835374 | ID=Msa0628230-mRNA-1:exon:2565;Parent=Msa0628230-mRNA-1 |
| chr4_3 | exon | 8835872 | 8836221 | 8835872 | ID=Msa0628230-mRNA-1:exon:2566;Parent=Msa0628230-mRNA-1 |
| chr4_3 | exon | 8836418 | 8836471 | 8836418 | ID=Msa0628230-mRNA-1:exon:2567;Parent=Msa0628230-mRNA-1 |
| chr4_3 | exon | 8836584 | 8836962 | 8836584 | ID=Msa0628230-mRNA-1:exon:2568;Parent=Msa0628230-mRNA-1 |
| chr4_3 | five_prime_UTR | 8829495 | 8829700 | 8829495 | ID=Msa0628230-mRNA-1:five_prime_utr;Parent=Msa0628230-mRNA-1 |
| chr4_3 | CDS | 8829701 | 8829845 | 8829701 | ID=Msa0628230-mRNA-1:cds;Parent=Msa0628230-mRNA-1 |
| chr4_3 | CDS | 8831093 | 8831259 | 8831093 | ID=Msa0628230-mRNA-1:cds;Parent=Msa0628230-mRNA-1 |
| chr4_3 | CDS | 8831689 | 8831841 | 8831689 | ID=Msa0628230-mRNA-1:cds;Parent=Msa0628230-mRNA-1 |
| chr4_3 | CDS | 8832177 | 8832366 | 8832177 | ID=Msa0628230-mRNA-1:cds;Parent=Msa0628230-mRNA-1 |
| chr4_3 | CDS | 8832477 | 8832565 | 8832477 | ID=Msa0628230-mRNA-1:cds;Parent=Msa0628230-mRNA-1 |
| chr4_3 | CDS | 8833200 | 8833307 | 8833200 | ID=Msa0628230-mRNA-1:cds;Parent=Msa0628230-mRNA-1 |
| chr4_3 | CDS | 8833612 | 8833710 | 8833612 | ID=Msa0628230-mRNA-1:cds;Parent=Msa0628230-mRNA-1 |
| chr4_3 | CDS | 8834199 | 8834291 | 8834199 | ID=Msa0628230-mRNA-1:cds;Parent=Msa0628230-mRNA-1 |
| chr4_3 | CDS | 8834437 | 8834514 | 8834437 | ID=Msa0628230-mRNA-1:cds;Parent=Msa0628230-mRNA-1 |
| chr4_3 | CDS | 8834974 | 8835078 | 8834974 | ID=Msa0628230-mRNA-1:cds;Parent=Msa0628230-mRNA-1 |
| chr4_3 | CDS | 8835374 | 8835464 | 8835374 | ID=Msa0628230-mRNA-1:cds;Parent=Msa0628230-mRNA-1 |
| chr4_3 | CDS | 8835872 | 8836221 | 8835872 | ID=Msa0628230-mRNA-1:cds;Parent=Msa0628230-mRNA-1 |
| chr4_3 | CDS | 8836418 | 8836471 | 8836418 | ID=Msa0628230-mRNA-1:cds;Parent=Msa0628230-mRNA-1 |
| chr4_3 | CDS | 8836584 | 8836628 | 8836584 | ID=Msa0628230-mRNA-1:cds;Parent=Msa0628230-mRNA-1 |
| chr4_3 | three_prime_UTR | 8836629 | 8836962 | 8836629 | ID=Msa0628230-mRNA-1:three_prime_utr;Parent=Msa0628230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
