Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264450 | XP_024635139.1 | 95.588 | 68 | 3 | 0 | 3 | 70 | 47 | 114 | 3.37e-36 | 135 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264450 | A0A072VKB0 | 95.588 | 68 | 3 | 0 | 3 | 70 | 47 | 114 | 1.70e-36 | 135 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0102070 | Msa0264450 | 0.805930 | 1.052550e-49 | -8.615850e-47 |
| Msa0264450 | Msa0270520 | 0.803103 | 4.090087e-49 | -8.615850e-47 |
| Msa0264450 | Msa0384800 | 0.804170 | 2.456473e-49 | -8.615850e-47 |
| Msa0264450 | Msa0717140 | 0.804671 | 1.931624e-49 | -8.615850e-47 |
| Msa0264450 | Msa0726140 | 0.820635 | 6.179455e-53 | -8.615850e-47 |
| Msa0264450 | Msa1052500 | 0.892594 | 1.375184e-74 | -8.615850e-47 |
| Msa0264450 | Msa1285930 | 0.819334 | 1.226739e-52 | -8.615850e-47 |
| Msa0264450 | Msa1287810 | 0.801594 | 8.366361e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264450 | MtrunA17_Chr1g0183031 | 92.857 | 70 | 5 | 0 | 1 | 70 | 96 | 165 | 4.37e-40 | 136 |
| Msa0264450 | MtrunA17_Chr7g0262551 | 61.429 | 70 | 27 | 0 | 1 | 70 | 92 | 161 | 9.33e-25 | 95.9 |
| Msa0264450 | MtrunA17_Chr1g0183021 | 61.429 | 70 | 27 | 0 | 1 | 70 | 194 | 263 | 8.42e-20 | 82.8 |
| Msa0264450 | MtrunA17_Chr7g0262571 | 50.000 | 70 | 35 | 0 | 1 | 70 | 147 | 216 | 5.34e-18 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264450 | AT4G28706.1 | 52.941 | 102 | 37 | 3 | 1 | 100 | 129 | 221 | 2.30e-24 | 95.5 |
| Msa0264450 | AT4G28706.3 | 61.111 | 72 | 28 | 0 | 1 | 72 | 131 | 202 | 2.37e-24 | 95.5 |
| Msa0264450 | AT4G28706.2 | 61.111 | 72 | 28 | 0 | 1 | 72 | 131 | 202 | 2.48e-24 | 95.5 |
| Msa0264450 | AT4G28706.4 | 52.941 | 102 | 37 | 3 | 1 | 100 | 131 | 223 | 2.57e-24 | 95.9 |
| Msa0264450 | AT5G43910.1 | 43.284 | 67 | 38 | 0 | 4 | 70 | 98 | 164 | 1.16e-14 | 68.2 |
| Msa0264450 | AT5G43910.3 | 43.284 | 67 | 38 | 0 | 4 | 70 | 98 | 164 | 1.27e-14 | 67.8 |
| Msa0264450 | AT5G43910.5 | 43.284 | 67 | 38 | 0 | 4 | 70 | 98 | 164 | 1.45e-14 | 68.2 |
| Msa0264450 | AT5G43910.4 | 43.284 | 67 | 38 | 0 | 4 | 70 | 98 | 164 | 2.15e-14 | 67.8 |
| Msa0264450 | AT5G43910.2 | 43.284 | 67 | 38 | 0 | 4 | 70 | 98 | 164 | 3.05e-14 | 67.4 |
Find 25 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATCCTGCAAATTAGATA+TGG | 0.227656 | 2_2:-64395112 | Msa0264450:CDS |
| AATTCCCATATCTAATTTGC+AGG | 0.307080 | 2_2:+64395107 | None:intergenic |
| AGGCATCCTAACATCAAAAT+AGG | 0.360561 | 2_2:+64396058 | None:intergenic |
| TCAATAATAATGTAGCTAAA+TGG | 0.361983 | 2_2:+64396593 | None:intergenic |
| CCATATCTAATTTGCAGGAT+TGG | 0.389528 | 2_2:+64395112 | None:intergenic |
| TTTGCACGCAAAAGATCTTC+CGG | 0.409758 | 2_2:+64396113 | None:intergenic |
| AGATCTTCCGGTACCATTGT+AGG | 0.426104 | 2_2:+64396125 | None:intergenic |
| GCAATGACAAGAGCAGTTGC+AGG | 0.440063 | 2_2:+64396038 | None:intergenic |
| AGATCTCAGGCTCACCCAAC+AGG | 0.454506 | 2_2:-64395206 | Msa0264450:CDS |
| TGCTCTTGTCATTGCTAAAG+AGG | 0.464049 | 2_2:-64396030 | Msa0264450:intron |
| CAATCCTGCAAATTAGATAT+GGG | 0.471332 | 2_2:-64395111 | Msa0264450:CDS |
| GTAAACTAGGTCATCTAAGA+AGG | 0.488080 | 2_2:+64395134 | None:intergenic |
| AAAAGCCATATTCAGATCTC+AGG | 0.491696 | 2_2:-64395219 | Msa0264450:intron |
| AAATTGTTATCTGCATTGAA+TGG | 0.495412 | 2_2:-64396092 | Msa0264450:CDS |
| ATTTGCAGGATTGGTAAACT+AGG | 0.512436 | 2_2:+64395121 | None:intergenic |
| TGTTTCCAGGTCTCAAAGGA+AGG | 0.519022 | 2_2:-64396623 | Msa0264450:intron |
| AGGATCTCCTACAATGGTAC+CGG | 0.559044 | 2_2:-64396132 | Msa0264450:CDS |
| CATTTGTTTCCAGGTCTCAA+AGG | 0.559636 | 2_2:-64396627 | Msa0264450:intron |
| TGCATTGAATGGAGCTAGAG+TGG | 0.563511 | 2_2:-64396081 | Msa0264450:CDS |
| GTTTCCAGGTCTCAAAGGAA+GGG | 0.571955 | 2_2:-64396622 | Msa0264450:intron |
| CACAGAAGGATCTCCTACAA+TGG | 0.585278 | 2_2:-64396138 | Msa0264450:CDS |
| CGAACTTGTATATTCACAGA+AGG | 0.625943 | 2_2:-64396152 | Msa0264450:CDS |
| AAAGAGACTCTACGATGAGG+AGG | 0.629635 | 2_2:-64395160 | Msa0264450:CDS |
| TCTCAGGCTCACCCAACAGG+AGG | 0.656049 | 2_2:-64395203 | Msa0264450:CDS |
| GAGAAAGAGACTCTACGATG+AGG | 0.696739 | 2_2:-64395163 | Msa0264450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTACATTTATTCAATT+TGG | - | chr2_2:64396437-64396456 | Msa0264450:intron | 10.0% |
| !!! | TTTTTACATTTATTCAATTT+GGG | - | chr2_2:64396438-64396457 | Msa0264450:intron | 10.0% |
| !! | ATTTAAGAATTTGTAAAAAT+AGG | + | chr2_2:64396563-64396582 | None:intergenic | 10.0% |
| !!! | TTTGTACTTTTATATTTTTA+TGG | - | chr2_2:64397925-64397944 | Msa0264450:intron | 10.0% |
| !! | AAAGCTTAATTAATTTATAA+TGG | - | chr2_2:64398409-64398428 | Msa0264450:intron | 10.0% |
| !! | GCTATATAGAATAATTAATA+TGG | - | chr2_2:64395655-64395674 | Msa0264450:intron | 15.0% |
| !! | TAAATTAGTATTAGTTAGAA+TGG | - | chr2_2:64396578-64396597 | Msa0264450:intron | 15.0% |
| !!! | TTTAACTTGATCATAATTTT+TGG | + | chr2_2:64397295-64397314 | None:intergenic | 15.0% |
| !! | TTTGTAAACATTGTAATGTT+TGG | - | chr2_2:64395327-64395346 | Msa0264450:intron | 20.0% |
| !! | CTTACTTACTTATATATTCA+AGG | - | chr2_2:64395405-64395424 | Msa0264450:intron | 20.0% |
| !!! | CACTTATAAATTTGTTTCAA+TGG | + | chr2_2:64395528-64395547 | None:intergenic | 20.0% |
| !! | TTATGAGCATCATATAATAA+AGG | - | chr2_2:64395731-64395750 | Msa0264450:intron | 20.0% |
| !! | ATATCTTAATGTGTAAAACT+AGG | + | chr2_2:64396318-64396337 | None:intergenic | 20.0% |
| !! | ATCATTATACTTTAAGTCAT+TGG | - | chr2_2:64396522-64396541 | Msa0264450:intron | 20.0% |
| !!! | TGAATTTGGATTCATTATTT+TGG | + | chr2_2:64396667-64396686 | None:intergenic | 20.0% |
| !! | AGTTCTTTAATTCTCTTTAA+AGG | - | chr2_2:64396712-64396731 | Msa0264450:intron | 20.0% |
| !! | TCAATAATAATGTAGCTAAA+TGG | + | chr2_2:64397126-64397145 | None:intergenic | 20.0% |
| !! | ATGTAAAATCATTTAAGCAA+TGG | + | chr2_2:64397165-64397184 | None:intergenic | 20.0% |
| !! | TACAAGTATATGAAAGTTAT+TGG | - | chr2_2:64397258-64397277 | Msa0264450:intron | 20.0% |
| !! | AATGAATTATGAAGATTGTA+AGG | - | chr2_2:64397948-64397967 | Msa0264450:intron | 20.0% |
| !!! | TCCTTGCTTTTTTTCTAATT+TGG | - | chr2_2:64395494-64395513 | Msa0264450:intron | 25.0% |
| !!! | CCTTGCTTTTTTTCTAATTT+GGG | - | chr2_2:64395495-64395514 | Msa0264450:intron | 25.0% |
| ! | CTATAATTCATATACTAGCA+AGG | + | chr2_2:64395610-64395629 | None:intergenic | 25.0% |
| !!! | TTTTTCTATGCTTTGTTTAC+AGG | - | chr2_2:64395707-64395726 | Msa0264450:intron | 25.0% |
| !!! | TTTTCTATGCTTTGTTTACA+GGG | - | chr2_2:64395708-64395727 | Msa0264450:intron | 25.0% |
| !!! | AGCCTCTTTTTAAAGATAAT+GGG | - | chr2_2:64395769-64395788 | Msa0264450:intron | 25.0% |
| !! | TTCCCATTATCTTTAAAAAG+AGG | + | chr2_2:64395774-64395793 | None:intergenic | 25.0% |
| !!! | TCTTGTTTATGATTTGCTTA+TGG | - | chr2_2:64396184-64396203 | Msa0264450:intron | 25.0% |
| ! | TGCTTATGGCTATAAAATAT+TGG | - | chr2_2:64396198-64396217 | Msa0264450:intron | 25.0% |
| ! | AAGTATAATGATATCATGAG+TGG | + | chr2_2:64396514-64396533 | None:intergenic | 25.0% |
| !!! | TTTTGGTAGTTCTACTAAAT+TGG | + | chr2_2:64396650-64396669 | None:intergenic | 25.0% |
| ! | ACATCAAAAGGATTTGAATT+TGG | + | chr2_2:64396681-64396700 | None:intergenic | 25.0% |
| !!! | TCTTTAAAGGTACTTTATTC+TGG | - | chr2_2:64396725-64396744 | Msa0264450:intron | 25.0% |
| ! | TTTCATAATGTACATGTGAT+TGG | - | chr2_2:64396766-64396785 | Msa0264450:intron | 25.0% |
| ! | AAATAGCAAGTTTATGATGT+TGG | + | chr2_2:64396970-64396989 | None:intergenic | 25.0% |
| ! | TCAAGTTAAATTTAAGCACT+AGG | - | chr2_2:64397305-64397324 | Msa0264450:intron | 25.0% |
| ! | AAATTGTTATCTGCATTGAA+TGG | - | chr2_2:64397624-64397643 | Msa0264450:intron | 25.0% |
| !! | GCGTTTAATTATAGCATTTT+TGG | - | chr2_2:64398022-64398041 | Msa0264450:intron | 25.0% |
| ! | ACTTTAATAGCACTAGAATA+AGG | - | chr2_2:64398175-64398194 | Msa0264450:intron | 25.0% |
| ! | ATGCATGAATTATAAAGTTG+AGG | - | chr2_2:64398433-64398452 | Msa0264450:intron | 25.0% |
| ! | TGCATGAATTATAAAGTTGA+GGG | - | chr2_2:64398434-64398453 | Msa0264450:intron | 25.0% |
| TAGAAAACAACTAGTACACA+TGG | + | chr2_2:64395300-64395319 | None:intergenic | 30.0% | |
| CTTATATATTCAAGGCTTTG+AGG | - | chr2_2:64395413-64395432 | Msa0264450:intron | 30.0% | |
| CCCAAATTAGAAAAAAAGCA+AGG | + | chr2_2:64395498-64395517 | None:intergenic | 30.0% | |
| !!! | GCTTTTTTTCTAATTTGGGT+CGG | - | chr2_2:64395499-64395518 | Msa0264450:intron | 30.0% |
| ATAGCATCACATCTTATTAG+AGG | + | chr2_2:64395640-64395659 | None:intergenic | 30.0% | |
| !! | GAGCCTCTTTTTAAAGATAA+TGG | - | chr2_2:64395768-64395787 | Msa0264450:intron | 30.0% |
| ! | ATGACATTTTCTCATATGAG+AGG | + | chr2_2:64395955-64395974 | None:intergenic | 30.0% |
| TAGTCTTTCTATTGTAGACT+TGG | - | chr2_2:64396031-64396050 | Msa0264450:CDS | 30.0% | |
| ! | AAGTATAGCAACTTTTGTGT+TGG | + | chr2_2:64396072-64396091 | None:intergenic | 30.0% |
| ACACAAAAGTTGCTATACTT+TGG | - | chr2_2:64396072-64396091 | Msa0264450:CDS | 30.0% | |
| !! | ATACACTTCCCTTTTTCATA+GGG | - | chr2_2:64396111-64396130 | Msa0264450:CDS | 30.0% |
| TTGGTGAAGTTAAATACAAC+TGG | - | chr2_2:64396217-64396236 | Msa0264450:intron | 30.0% | |
| TGGTGAAGTTAAATACAACT+GGG | - | chr2_2:64396218-64396237 | Msa0264450:intron | 30.0% | |
| GAATCACTAATCCAATTAGA+AGG | - | chr2_2:64396258-64396277 | Msa0264450:intron | 30.0% | |
| TCCAATTAGAAGGCTTATAT+AGG | - | chr2_2:64396268-64396287 | Msa0264450:intron | 30.0% | |
| ACCTATATAAGCCTTCTAAT+TGG | + | chr2_2:64396272-64396291 | None:intergenic | 30.0% | |
| TCACTCATGATATTTCTTGA+TGG | - | chr2_2:64396372-64396391 | Msa0264450:intron | 30.0% | |
| ! | TCTATGACTCTTGAAACTTT+TGG | - | chr2_2:64396407-64396426 | Msa0264450:intron | 30.0% |
| TATGAAGTAGCATCTATCTA+AGG | + | chr2_2:64396468-64396487 | None:intergenic | 30.0% | |
| ! | TAGATAGATGCTACTTCATA+AGG | - | chr2_2:64396468-64396487 | Msa0264450:intron | 30.0% |
| GATTTGCATTGAAAGAGATA+TGG | - | chr2_2:64396612-64396631 | Msa0264450:CDS | 30.0% | |
| !! | AAGCACTAGGAGTATTAAAA+AGG | - | chr2_2:64397318-64397337 | Msa0264450:intron | 30.0% |
| AGACATGCTTGATAGATAAT+TGG | - | chr2_2:64397374-64397393 | Msa0264450:intron | 30.0% | |
| AATTGGATTTCTTAAGCATG+TGG | - | chr2_2:64397391-64397410 | Msa0264450:intron | 30.0% | |
| ! | TAAGCATGTGGTTTGATAAT+CGG | - | chr2_2:64397403-64397422 | Msa0264450:intron | 30.0% |
| TCCTATAATGTTGAACATTC+AGG | - | chr2_2:64397535-64397554 | Msa0264450:intron | 30.0% | |
| TCCTGAATGTTCAACATTAT+AGG | + | chr2_2:64397539-64397558 | None:intergenic | 30.0% | |
| ! | CTATTAGTACTTTTCTCAAG+AGG | - | chr2_2:64397794-64397813 | Msa0264450:intron | 30.0% |
| TCTAAGTAAATTGTCATCGT+TGG | - | chr2_2:64397819-64397838 | Msa0264450:intron | 30.0% | |
| ! | GTTCCCAAATTAGTACTTTT+TGG | - | chr2_2:64397856-64397875 | Msa0264450:intron | 30.0% |
| !! | CCTCCAAAAAGTACTAATTT+GGG | + | chr2_2:64397862-64397881 | None:intergenic | 30.0% |
| !! | CCAAATTAGTACTTTTTGGA+GGG | - | chr2_2:64397860-64397879 | Msa0264450:intron | 30.0% |
| AAAGATGAAGATGAAGATGA+GGG | + | chr2_2:64397903-64397922 | None:intergenic | 30.0% | |
| TAAAGATGAAGATGAAGATG+AGG | + | chr2_2:64397904-64397923 | None:intergenic | 30.0% | |
| !! | TGTTGCTATTTAATAGCGTT+TGG | - | chr2_2:64398232-64398251 | Msa0264450:intron | 30.0% |
| CCAAAATAAGTGCTATGAAA+GGG | - | chr2_2:64398326-64398345 | Msa0264450:intron | 30.0% | |
| CAAAATAAGTGCTATGAAAG+GGG | - | chr2_2:64398327-64398346 | Msa0264450:intron | 30.0% | |
| AAAATAAGTGCTATGAAAGG+GGG | - | chr2_2:64398328-64398347 | Msa0264450:intron | 30.0% | |
| CAATCCTGCAAATTAGATAT+GGG | - | chr2_2:64398605-64398624 | Msa0264450:intron | 30.0% | |
| ! | AATTCCCATATCTAATTTGC+AGG | + | chr2_2:64398612-64398631 | None:intergenic | 30.0% |
| ATTTGACAACACTGCTTTGT+TGG | - | chr2_2:64395242-64395261 | Msa0264450:intron | 35.0% | |
| !! | TAAAGCTAACTTGCTACTAC+TGG | + | chr2_2:64395814-64395833 | None:intergenic | 35.0% |
| !! | GATACACTTCCCTTTTTCAT+AGG | - | chr2_2:64396110-64396129 | Msa0264450:CDS | 35.0% |
| TACTTCATAAGGCAATAGCA+TGG | - | chr2_2:64396479-64396498 | Msa0264450:intron | 35.0% | |
| AATGATATCATGAGTGGTGT+TGG | + | chr2_2:64396508-64396527 | None:intergenic | 35.0% | |
| TGCATGTTAGTGACATCAAA+AGG | + | chr2_2:64396693-64396712 | None:intergenic | 35.0% | |
| TATTCTGGTGTATACCAAGA+AGG | - | chr2_2:64396740-64396759 | Msa0264450:intron | 35.0% | |
| CATAATGTACATGTGATTGG+CGG | - | chr2_2:64396769-64396788 | Msa0264450:intron | 35.0% | |
| ATAATGTACATGTGATTGGC+GGG | - | chr2_2:64396770-64396789 | Msa0264450:intron | 35.0% | |
| GGACCTTACATATTCACTTT+AGG | - | chr2_2:64396803-64396822 | Msa0264450:intron | 35.0% | |
| GTGCCTAAAGTGAATATGTA+AGG | + | chr2_2:64396809-64396828 | None:intergenic | 35.0% | |
| TTCCTTTCTCATTTGTTTCC+AGG | - | chr2_2:64397080-64397099 | Msa0264450:intron | 35.0% | |
| CAAGTGAAAAATTAGGAGGA+AGG | + | chr2_2:64397207-64397226 | None:intergenic | 35.0% | |
| ! | TCCTCCTAATTTTTCACTTG+TGG | - | chr2_2:64397207-64397226 | Msa0264450:intron | 35.0% |
| ! | CCTCCTAATTTTTCACTTGT+GGG | - | chr2_2:64397208-64397227 | Msa0264450:intron | 35.0% |
| ! | CTCCTAATTTTTCACTTGTG+GGG | - | chr2_2:64397209-64397228 | Msa0264450:intron | 35.0% |
| GACAGTAGACACTATGTTAT+TGG | + | chr2_2:64397349-64397368 | None:intergenic | 35.0% | |
| !! | CAACTGCTAATTTTGACACA+TGG | - | chr2_2:64397471-64397490 | Msa0264450:intron | 35.0% |
| CGAACTTGTATATTCACAGA+AGG | - | chr2_2:64397564-64397583 | Msa0264450:intron | 35.0% | |
| AGGCATCCTAACATCAAAAT+AGG | + | chr2_2:64397661-64397680 | None:intergenic | 35.0% | |
| !! | CCCAAATTAGTACTTTTTGG+AGG | - | chr2_2:64397859-64397878 | Msa0264450:intron | 35.0% |
| !! | CCCTCCAAAAAGTACTAATT+TGG | + | chr2_2:64397863-64397882 | None:intergenic | 35.0% |
| !! | TAGTACTTTTTGGAGGGTTT+TGG | - | chr2_2:64397866-64397885 | Msa0264450:intron | 35.0% |
| AAGATGAAGATGAAGATGAG+GGG | + | chr2_2:64397902-64397921 | None:intergenic | 35.0% | |
| AAACCCCTATTTGAGTAGAA+AGG | - | chr2_2:64398102-64398121 | Msa0264450:intron | 35.0% | |
| TAGCCTTTCTACTCAAATAG+GGG | + | chr2_2:64398108-64398127 | None:intergenic | 35.0% | |
| GTAGCCTTTCTACTCAAATA+GGG | + | chr2_2:64398109-64398128 | None:intergenic | 35.0% | |
| !! | GTTGTTTCTTAGCACTTTCT+GGG | + | chr2_2:64398142-64398161 | None:intergenic | 35.0% |
| !! | AGTTGTTTCTTAGCACTTTC+TGG | + | chr2_2:64398143-64398162 | None:intergenic | 35.0% |
| GCCAAAATAAGTGCTATGAA+AGG | - | chr2_2:64398325-64398344 | Msa0264450:intron | 35.0% | |
| ! | CCCTTTCATAGCACTTATTT+TGG | + | chr2_2:64398329-64398348 | None:intergenic | 35.0% |
| AAAAGCCATATTCAGATCTC+AGG | - | chr2_2:64398497-64398516 | Msa0264450:intron | 35.0% | |
| !! | TTTCTACTTTTCCTCCTGTT+GGG | + | chr2_2:64398527-64398546 | None:intergenic | 35.0% |
| GTAAACTAGGTCATCTAAGA+AGG | + | chr2_2:64398585-64398604 | None:intergenic | 35.0% | |
| ! | ATTTGCAGGATTGGTAAACT+AGG | + | chr2_2:64398598-64398617 | None:intergenic | 35.0% |
| ! | CCATATCTAATTTGCAGGAT+TGG | + | chr2_2:64398607-64398626 | None:intergenic | 35.0% |
| CCAATCCTGCAAATTAGATA+TGG | - | chr2_2:64398604-64398623 | Msa0264450:intron | 35.0% | |
| GTGTCGAGTAGAATTGTTTG+TGG | - | chr2_2:64395174-64395193 | Msa0264450:CDS | 40.0% | |
| CACATGGAGATAGCATATGT+AGG | + | chr2_2:64395284-64395303 | None:intergenic | 40.0% | |
| GACTCTACAAGTGCATAGTT+TGG | + | chr2_2:64395851-64395870 | None:intergenic | 40.0% | |
| TGCACTTGTAGAGTCAAGAT+AGG | - | chr2_2:64395856-64395875 | Msa0264450:intron | 40.0% | |
| !! | AGAAAGTATCACATGCTGAG+AGG | + | chr2_2:64395912-64395931 | None:intergenic | 40.0% |
| ATATGAGAGGCTGCATTCAA+AGG | + | chr2_2:64395942-64395961 | None:intergenic | 40.0% | |
| CTCTACTGCCCTATGAAAAA+GGG | + | chr2_2:64396122-64396141 | None:intergenic | 40.0% | |
| CACGCACTAGATAGATAGTT+AGG | + | chr2_2:64396342-64396361 | None:intergenic | 40.0% | |
| TGCATTGAAAGAGATATGGC+AGG | - | chr2_2:64396616-64396635 | Msa0264450:CDS | 40.0% | |
| GCATTGAAAGAGATATGGCA+GGG | - | chr2_2:64396617-64396636 | Msa0264450:CDS | 40.0% | |
| ACATTATGAAACCGCCTTCT+TGG | + | chr2_2:64396757-64396776 | None:intergenic | 40.0% | |
| TAATGTACATGTGATTGGCG+GGG | - | chr2_2:64396771-64396790 | Msa0264450:intron | 40.0% | |
| GACCTGGAAACAAATGAGAA+AGG | + | chr2_2:64397085-64397104 | None:intergenic | 40.0% | |
| CATTTGTTTCCAGGTCTCAA+AGG | - | chr2_2:64397089-64397108 | Msa0264450:intron | 40.0% | |
| TAAGCAATGGTACATACGTG+TGG | + | chr2_2:64397152-64397171 | None:intergenic | 40.0% | |
| CCCACAAGTGAAAAATTAGG+AGG | + | chr2_2:64397211-64397230 | None:intergenic | 40.0% | |
| AGCCCCACAAGTGAAAAATT+AGG | + | chr2_2:64397214-64397233 | None:intergenic | 40.0% | |
| TTTGCACGCAAAAGATCTTC+CGG | + | chr2_2:64397606-64397625 | None:intergenic | 40.0% | |
| !!! | GAGTGGCCTATTTTGATGTT+AGG | - | chr2_2:64397652-64397671 | Msa0264450:intron | 40.0% |
| TGCTCTTGTCATTGCTAAAG+AGG | - | chr2_2:64397686-64397705 | Msa0264450:intron | 40.0% | |
| AGATGAAGATGAAGATGAGG+GGG | + | chr2_2:64397901-64397920 | None:intergenic | 40.0% | |
| CGTAGCCTTTCTACTCAAAT+AGG | + | chr2_2:64398110-64398129 | None:intergenic | 40.0% | |
| !! | CGTTTGGAAAGCGCTATTAT+AGG | - | chr2_2:64398248-64398267 | Msa0264450:intron | 40.0% |
| !! | CTTTCTACTTTTCCTCCTGT+TGG | + | chr2_2:64398528-64398547 | None:intergenic | 40.0% |
| GTTGACTAGTACCATGCTCA+AGG | - | chr2_2:64395549-64395568 | Msa0264450:intron | 45.0% | |
| AGAACATTGCACCTTGAGCA+TGG | + | chr2_2:64395563-64395582 | None:intergenic | 45.0% | |
| CCTCTACTGCCCTATGAAAA+AGG | + | chr2_2:64396123-64396142 | None:intergenic | 45.0% | |
| !! | CCTTTTTCATAGGGCAGTAG+AGG | - | chr2_2:64396120-64396139 | Msa0264450:CDS | 45.0% |
| ! | TTTTCATAGGGCAGTAGAGG+AGG | - | chr2_2:64396123-64396142 | Msa0264450:CDS | 45.0% |
| TCTATCTAGTGCGTGTGTCT+TGG | - | chr2_2:64396347-64396366 | Msa0264450:intron | 45.0% | |
| TCTGGTGTATACCAAGAAGG+CGG | - | chr2_2:64396743-64396762 | Msa0264450:intron | 45.0% | |
| ! | TGATTGGCGGGGTATCATAA+TGG | - | chr2_2:64396782-64396801 | Msa0264450:intron | 45.0% |
| TGTTTCCAGGTCTCAAAGGA+AGG | - | chr2_2:64397093-64397112 | Msa0264450:intron | 45.0% | |
| GTTTCCAGGTCTCAAAGGAA+GGG | - | chr2_2:64397094-64397113 | Msa0264450:intron | 45.0% | |
| CACAGAAGGATCTCCTACAA+TGG | - | chr2_2:64397578-64397597 | Msa0264450:intron | 45.0% | |
| AGGATCTCCTACAATGGTAC+CGG | - | chr2_2:64397584-64397603 | Msa0264450:intron | 45.0% | |
| AGATCTTCCGGTACCATTGT+AGG | + | chr2_2:64397594-64397613 | None:intergenic | 45.0% | |
| TGCATTGAATGGAGCTAGAG+TGG | - | chr2_2:64397635-64397654 | Msa0264450:intron | 45.0% | |
| GATGAAGATGAAGATGAGGG+GGG | + | chr2_2:64397900-64397919 | None:intergenic | 45.0% | |
| ! | AGGCTCCTGACCTTTTATAG+CGG | - | chr2_2:64398268-64398287 | Msa0264450:intron | 45.0% |
| AAGAAAGCCCCCGCTATAAA+AGG | + | chr2_2:64398281-64398300 | None:intergenic | 45.0% | |
| AGTGCTATGAAAGGGGGTAA+CGG | - | chr2_2:64398334-64398353 | Msa0264450:intron | 45.0% | |
| GTGAGCCTGAGATCTGAATA+TGG | + | chr2_2:64398505-64398524 | None:intergenic | 45.0% | |
| GAGAAAGAGACTCTACGATG+AGG | - | chr2_2:64398553-64398572 | Msa0264450:intron | 45.0% | |
| AAAGAGACTCTACGATGAGG+AGG | - | chr2_2:64398556-64398575 | Msa0264450:intron | 45.0% | |
| !! | TAGTCCCTTCCTTTGAGACC+TGG | + | chr2_2:64397101-64397120 | None:intergenic | 50.0% |
| GCAATGACAAGAGCAGTTGC+AGG | + | chr2_2:64397681-64397700 | None:intergenic | 50.0% | |
| ! | GGCTCCTGACCTTTTATAGC+GGG | - | chr2_2:64398269-64398288 | Msa0264450:intron | 50.0% |
| ! | GCTCCTGACCTTTTATAGCG+GGG | - | chr2_2:64398270-64398289 | Msa0264450:intron | 50.0% |
| ! | CTCCTGACCTTTTATAGCGG+GGG | - | chr2_2:64398271-64398290 | Msa0264450:intron | 50.0% |
| !! | CTATGAAAGGGGGTAACGGA+GGG | - | chr2_2:64398338-64398357 | Msa0264450:intron | 50.0% |
| TCATAGGGCAGTAGAGGAGG+AGG | - | chr2_2:64396126-64396145 | Msa0264450:CDS | 55.0% | |
| CATAGGGCAGTAGAGGAGGA+GGG | - | chr2_2:64396127-64396146 | Msa0264450:CDS | 55.0% | |
| AGCCCCCGCTATAAAAGGTC+AGG | + | chr2_2:64398276-64398295 | None:intergenic | 55.0% | |
| ! | GCTATGAAAGGGGGTAACGG+AGG | - | chr2_2:64398337-64398356 | Msa0264450:intron | 55.0% |
| AGATCTCAGGCTCACCCAAC+AGG | - | chr2_2:64398510-64398529 | Msa0264450:intron | 55.0% | |
| TCTCAGGCTCACCCAACAGG+AGG | - | chr2_2:64398513-64398532 | Msa0264450:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 64395104 | 64398634 | 64395104 | ID=Msa0264450;Name=Msa0264450 |
| chr2_2 | mRNA | 64395104 | 64398634 | 64395104 | ID=Msa0264450-mRNA-1;Parent=Msa0264450;Name=Msa0264450-mRNA-1;_AED=0.65;_eAED=0.66;_QI=0|0.33|0.25|0.75|0.33|0.25|4|0|110 |
| chr2_2 | exon | 64398629 | 64398634 | 64398629 | ID=Msa0264450-mRNA-1:exon:20143;Parent=Msa0264450-mRNA-1 |
| chr2_2 | exon | 64396584 | 64396636 | 64396584 | ID=Msa0264450-mRNA-1:exon:20142;Parent=Msa0264450-mRNA-1 |
| chr2_2 | exon | 64396031 | 64396181 | 64396031 | ID=Msa0264450-mRNA-1:exon:20141;Parent=Msa0264450-mRNA-1 |
| chr2_2 | exon | 64395104 | 64395226 | 64395104 | ID=Msa0264450-mRNA-1:exon:20140;Parent=Msa0264450-mRNA-1 |
| chr2_2 | CDS | 64398629 | 64398634 | 64398629 | ID=Msa0264450-mRNA-1:cds;Parent=Msa0264450-mRNA-1 |
| chr2_2 | CDS | 64396584 | 64396636 | 64396584 | ID=Msa0264450-mRNA-1:cds;Parent=Msa0264450-mRNA-1 |
| chr2_2 | CDS | 64396031 | 64396181 | 64396031 | ID=Msa0264450-mRNA-1:cds;Parent=Msa0264450-mRNA-1 |
| chr2_2 | CDS | 64395104 | 64395226 | 64395104 | ID=Msa0264450-mRNA-1:cds;Parent=Msa0264450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
