AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0265930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0265930 MtrunA17_Chr2g0331031 94.915 354 10 2 1 347 1 353 0.0 688
Msa0265930 MtrunA17_Chr4g0055931 53.009 349 128 14 1 336 1 326 2.64e-100 299
Msa0265930 MtrunA17_Chr6g0488471 55.233 172 63 4 1 168 1 162 2.23e-50 169
Msa0265930 MtrunA17_Chr5g0415191 50.000 204 58 7 1 183 3 183 1.85e-48 165
Msa0265930 MtrunA17_Chr8g0389241 50.289 173 72 4 3 168 4 169 1.81e-44 154
Msa0265930 MtrunA17_Chr4g0059701 50.920 163 74 5 22 183 6 163 4.38e-33 124
Msa0265930 MtrunA17_Chr1g0210471 61.538 91 34 1 97 187 118 207 6.22e-33 122
Msa0265930 MtrunA17_Chr4g0062741 74.286 70 18 0 98 167 133 202 1.78e-32 123
Msa0265930 MtrunA17_Chr3g0104071 47.651 149 60 5 98 245 142 273 2.31e-32 123
Msa0265930 MtrunA17_Chr5g0429521 73.239 71 19 0 98 168 127 197 6.09e-32 121
Msa0265930 MtrunA17_Chr7g0241761 74.648 71 18 0 98 168 135 205 3.50e-31 119
Msa0265930 MtrunA17_Chr1g0162081 53.636 110 43 1 98 207 117 218 8.45e-31 118
Msa0265930 MtrunA17_Chr5g0436501 62.222 90 32 1 98 185 120 209 4.53e-30 115
Msa0265930 MtrunA17_Chr3g0092621 69.014 71 21 1 103 172 84 154 3.60e-29 110
Msa0265930 MtrunA17_Chr3g0135671 42.529 174 77 5 1 168 3 159 5.57e-28 109
Msa0265930 MtrunA17_Chr6g0452791 61.429 70 24 1 84 153 64 130 5.48e-22 91.3
Msa0265930 MtrunA17_Chr5g0409841 45.161 93 49 1 99 189 88 180 4.77e-21 90.5
Msa0265930 MtrunA17_Chr5g0440731 52.113 71 31 1 99 166 101 171 3.88e-20 89.4
Msa0265930 MtrunA17_Chr5g0440741 56.923 65 25 1 105 166 102 166 1.63e-19 87.4
Msa0265930 MtrunA17_Chr5g0409831 57.895 57 24 0 99 155 73 129 2.56e-17 80.1
Msa0265930 MtrunA17_Chr8g0364731 62.069 58 20 1 112 167 10 67 4.57e-15 72.8
Msa0265930 MtrunA17_Chr8g0365011 39.806 103 42 3 85 167 68 170 7.91e-15 73.9
Msa0265930 MtrunA17_Chr1g0192061 53.846 65 25 2 105 165 63 126 3.70e-14 70.1
Msa0265930 MtrunA17_Chr5g0432921 51.562 64 27 2 105 165 115 177 2.03e-13 68.9
Msa0265930 MtrunA17_Chr5g0432941 50.000 64 28 2 105 165 115 177 6.03e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0265930 AT3G16350.1 54.476 391 130 14 1 347 1 387 2.66e-108 322
Msa0265930 AT5G47390.1 48.021 379 137 14 1 338 1 360 7.55e-90 274
Msa0265930 AT1G70000.1 54.315 197 62 8 1 186 1 180 1.70e-51 172
Msa0265930 AT1G70000.2 54.315 197 62 8 1 186 1 180 1.70e-51 172
Msa0265930 AT5G61620.1 39.370 254 116 8 1 247 8 230 6.58e-48 164
Msa0265930 AT5G56840.1 51.479 169 69 4 1 168 1 157 2.95e-47 160
Msa0265930 AT2G38090.1 65.625 96 33 0 80 175 118 213 4.43e-35 130
Msa0265930 AT5G58900.1 74.286 70 18 0 98 167 136 205 3.32e-32 122
Msa0265930 AT1G49010.1 74.286 70 18 0 98 167 129 198 8.38e-32 122
Msa0265930 AT1G74840.2 48.503 167 75 6 29 192 24 182 5.85e-30 115
Msa0265930 AT5G08520.1 70.000 70 21 0 98 167 113 182 7.07e-30 116
Msa0265930 AT5G04760.1 65.278 72 25 0 97 168 93 164 1.38e-29 113
Msa0265930 AT1G74840.1 48.503 167 75 6 29 192 24 182 1.89e-29 114
Msa0265930 AT3G11280.2 71.429 70 20 0 98 167 122 191 1.23e-28 112
Msa0265930 AT3G11280.1 71.429 70 20 0 98 167 122 191 1.23e-28 112
Msa0265930 AT5G01200.1 70.000 70 21 0 98 167 141 210 2.03e-28 111
Msa0265930 AT1G19000.2 46.629 178 66 8 29 191 22 185 4.68e-28 111
Msa0265930 AT1G19000.1 46.629 178 66 8 29 191 22 185 4.68e-28 111
Msa0265930 AT5G05790.2 46.491 114 55 1 98 211 126 233 5.48e-27 108
Msa0265930 AT5G05790.1 46.491 114 55 1 98 211 126 233 5.48e-27 108
Msa0265930 AT4G09450.1 51.613 93 45 0 80 172 68 160 3.36e-24 98.6
Msa0265930 AT3G10580.2 50.000 96 43 2 73 168 68 158 2.71e-23 97.4
Msa0265930 AT3G10580.1 58.667 75 29 1 94 168 86 158 3.88e-23 97.8
Msa0265930 AT5G23650.1 53.425 73 34 0 96 168 113 185 2.74e-20 90.9
Msa0265930 AT3G10590.1 45.349 86 44 2 85 168 91 175 1.30e-16 77.8

Find 127 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTCTCCTTTGCCTAGCTTT+TGG 0.260546 2_2:+66342763 None:intergenic
GAAGCGCCGCCGCTGCCGGC+GGG 0.281178 2_2:-66345247 Msa0265930:CDS
CATCAAGAAAAGTGCCAGTA+TGG 0.298362 2_2:-66345186 Msa0265930:CDS
GGAAGAACATAGATTGTTCT+TGG 0.306357 2_2:-66342793 Msa0265930:CDS
GGAAGTAGTATTTGCTCTTC+TGG 0.308188 2_2:+66342041 None:intergenic
CTCGGTTTGGCTATAATTGT+TGG 0.320531 2_2:-66341285 Msa0265930:three_prime_UTR
GAAAATGAGGCAGGTAAATA+AGG 0.320772 2_2:+66341846 None:intergenic
GATGAAGAGCAGCGAGGTTT+AGG 0.321604 2_2:+66345159 None:intergenic
AGTTTGAGGCTTTCAAAGTA+TGG 0.334376 2_2:-66341538 Msa0265930:exon
TCGAGAAGCGCCGCCGCTGC+CGG 0.338043 2_2:-66345251 Msa0265930:CDS
TCCTTTGGAATGACTGGTAT+TGG 0.340477 2_2:+66341750 None:intergenic
CCCCTTTCCTTGAAGTTGTT+AGG 0.350389 2_2:-66341648 Msa0265930:CDS
TCTGGCATCGAAGTTGAATC+TGG 0.363477 2_2:+66342059 None:intergenic
TGGAATGCTGATTGCCTTGA+GGG 0.363738 2_2:+66341621 None:intergenic
CTTCACCCCGCCGGCAGCGG+CGG 0.373251 2_2:+66345241 None:intergenic
GTAGTAACTAAGCCTTCTTT+TGG 0.378146 2_2:-66341507 Msa0265930:three_prime_UTR
TCAACATTGACAGGTTCCTT+TGG 0.380571 2_2:+66341735 None:intergenic
TTTAGATCAGAACCGCTAAC+TGG 0.381028 2_2:+66341588 None:intergenic
TCAAAGGGAGCTCCAATTGA+TGG 0.384606 2_2:+66341816 None:intergenic
TACTTAGAAGTTAAACACTA+TGG 0.389922 2_2:+66341432 None:intergenic
TGATCCCATTGTAGTCTCAT+TGG 0.391511 2_2:+66341905 None:intergenic
GAATGTCTCATCTGAGCATT+GGG 0.393213 2_2:-66341701 Msa0265930:CDS
GCTCAGGTTAGATCAATTCT+TGG 0.395743 2_2:-66341384 Msa0265930:three_prime_UTR
TCCTTTGTTGACTTCTTCAA+AGG 0.400771 2_2:+66341800 None:intergenic
AGAAGCGCCGCCGCTGCCGG+CGG 0.417090 2_2:-66345248 Msa0265930:CDS
AAAGCCTCAAACTGCTTGAA+TGG 0.420085 2_2:+66341548 None:intergenic
AAGCGCCGCCGCTGCCGGCG+GGG 0.428113 2_2:-66345246 Msa0265930:CDS
CGAGAGGAACATGGACCTCT+TGG 0.431558 2_2:+66341304 None:intergenic
GAGACTACAATGGGATCAAA+TGG 0.433570 2_2:-66341900 Msa0265930:CDS
CCTTTGTTGACTTCTTCAAA+GGG 0.434334 2_2:+66341801 None:intergenic
CGGTTCAAAACAAGGTGAAC+CGG 0.438885 2_2:+66345112 None:intergenic
TCCTAACAACTTCAAGGAAA+GGG 0.440079 2_2:+66341647 None:intergenic
TCTTCAGATGTAGCTTCCAT+TGG 0.445737 2_2:+66341942 None:intergenic
AAAAGCTAGGCAAAGGAGAC+TGG 0.448710 2_2:-66342761 Msa0265930:CDS
GGGAAGAATCCTTGCGTCAT+TGG 0.453748 2_2:+66341870 None:intergenic
ACAGGTTCCTTTGGAATGAC+TGG 0.453964 2_2:+66341744 None:intergenic
GAGGTTTAGGTTCCCCATAC+TGG 0.455596 2_2:+66345172 None:intergenic
AAAGCAGAAGAAGCATGAAC+CGG 0.455984 2_2:+66345056 None:intergenic
AAGCTTCACCCCGCCGGCAG+CGG 0.457103 2_2:+66345238 None:intergenic
CACATGGTGTTATGTAGCTC+AGG 0.457543 2_2:-66341400 Msa0265930:three_prime_UTR
GAACATAGATTGTTCTTGGT+TGG 0.461435 2_2:-66342789 Msa0265930:CDS
CATGACTTGCTACTTGAGTA+GGG 0.462555 2_2:+66342703 None:intergenic
GGTCCATGTTCCTCTCGGTT+TGG 0.463154 2_2:-66341298 Msa0265930:three_prime_UTR
AACGCCATTCAAGCAGTTTG+AGG 0.463617 2_2:-66341552 Msa0265930:exon
GCATGACTTGCTACTTGAGT+AGG 0.464793 2_2:+66342702 None:intergenic
GAATGAATACTGACCACATC+AGG 0.481403 2_2:+66342609 None:intergenic
TTTCTTGATGATTGATCCAT+CGG 0.482732 2_2:+66345199 None:intergenic
AGCTCCAATTGATGGCCATA+TGG 0.483931 2_2:+66341824 None:intergenic
GGGCTCTCCTAACAACTTCA+AGG 0.485368 2_2:+66341641 None:intergenic
CGCCGCCGCGGATGATGACT+CGG 0.488916 2_2:+66345338 None:intergenic
CATGCAAATGCTCCAGTTAG+CGG 0.489459 2_2:-66341600 Msa0265930:CDS
ACAAGTTCATCAACATTGAC+AGG 0.494176 2_2:+66341726 None:intergenic
TCATCAGACAAATAACCATC+CGG 0.495302 2_2:+66345080 None:intergenic
ACGGACATGTCCGTGAGTTA+TGG 0.495840 2_2:+66345273 None:intergenic
TCTTCTTCGCCGCTGAACCC+CGG 0.498426 2_2:-66345131 Msa0265930:CDS
GAGAACTCACAACCTTGTAA+TGG 0.500646 2_2:-66342011 Msa0265930:CDS
TGGTTATTTGTCTGATGACC+CGG 0.508683 2_2:-66345075 Msa0265930:CDS
TTTCGACATGGCTCCTGATG+TGG 0.516858 2_2:-66342622 Msa0265930:intron
CCTAACAACTTCAAGGAAAG+GGG 0.517543 2_2:+66341648 None:intergenic
GCAGCGGCGGCGCTTCTCGA+CGG 0.517789 2_2:+66345254 None:intergenic
CTATGTTCTTCCTCAGTCCA+TGG 0.518156 2_2:+66342804 None:intergenic
GGTTCAAAACAAGGTGAACC+GGG 0.521484 2_2:+66345113 None:intergenic
TGATGGCCATATGGAAAATG+AGG 0.522407 2_2:+66341833 None:intergenic
AGGAGAGACATCGTATCATC+AGG 0.522529 2_2:-66341781 Msa0265930:CDS
AGGAGCCATGTCGAAAAGAC+TGG 0.523291 2_2:+66342629 None:intergenic
ATCAAGAAAAGTGCCAGTAT+GGG 0.525026 2_2:-66345185 Msa0265930:CDS
CGCTAACTGGAGCATTTGCA+TGG 0.525907 2_2:+66341601 None:intergenic
GGAATGTCTCATCTGAGCAT+TGG 0.531337 2_2:-66341702 Msa0265930:CDS
AATGAAAGATGGCCAAAAGA+AGG 0.531941 2_2:+66341495 None:intergenic
ATTATAGCACAAATGAAAGA+TGG 0.533034 2_2:+66341484 None:intergenic
TTGGTTGGTCTCCAAAAGCT+AGG 0.538073 2_2:-66342774 Msa0265930:CDS
ATCTGAAGAAAATGTAGAAG+AGG 0.540720 2_2:-66341928 Msa0265930:CDS
ATGAGGCAGGTAAATAAGGT+GGG 0.541274 2_2:+66341850 None:intergenic
CAAGAGGTCCATGTTCCTCT+CGG 0.542677 2_2:-66341303 Msa0265930:three_prime_UTR
CTCCTAACAACTTCAAGGAA+AGG 0.542864 2_2:+66341646 None:intergenic
TCCTGGTAGCATTACTCTGT+CGG 0.543171 2_2:+66342664 None:intergenic
GGCCATATGGAAAATGAGGC+AGG 0.543383 2_2:+66341837 None:intergenic
ATGGAATGCTGATTGCCTTG+AGG 0.546697 2_2:+66341620 None:intergenic
GGCGGCGATTCGTGATGACT+CGG 0.556358 2_2:-66345322 Msa0265930:exon
CAAGTCAGAATATGAACCAA+TGG 0.562551 2_2:-66341958 Msa0265930:CDS
CAAGGTGAACCGGGGTTCAG+CGG 0.568397 2_2:+66345122 None:intergenic
CAAGGTTGTGAGTTCTCAGA+AGG 0.569930 2_2:+66342017 None:intergenic
GAATGACTGGTATTGGCTTG+AGG 0.572196 2_2:+66341757 None:intergenic
GAGGCCAATGAGACTACAAT+GGG 0.576022 2_2:-66341909 Msa0265930:CDS
ACTGGAACGTCTCTTCCTCC+TGG 0.576071 2_2:+66342647 None:intergenic
TCTGAGCATTGGGGAAACAC+AGG 0.576890 2_2:-66341691 Msa0265930:CDS
AGTTGTTAGGAGAGCCCTCA+AGG 0.579322 2_2:-66341635 Msa0265930:CDS
AAGCAGAAGAAGCATGAACC+GGG 0.580723 2_2:+66345057 None:intergenic
AATGAGGCAGGTAAATAAGG+TGG 0.582975 2_2:+66341849 None:intergenic
TCATGCGGCGGTTCAAAACA+AGG 0.584178 2_2:+66345104 None:intergenic
GTCAATGTTGATGAACTTGT+GGG 0.584457 2_2:-66341723 Msa0265930:CDS
TAGCCAAACCGAGAGGAACA+TGG 0.589318 2_2:+66341295 None:intergenic
TTTGGTGTTAGATTAACCGA+TGG 0.592133 2_2:-66345215 Msa0265930:CDS
TGTCAATGTTGATGAACTTG+TGG 0.593101 2_2:-66341724 Msa0265930:CDS
TGCTCTCACTGCAGCAACAA+CGG 0.601199 2_2:-66345296 Msa0265930:CDS
GGTTGTGAGTTCTCAGAAGG+TGG 0.602477 2_2:+66342020 None:intergenic
GAACCGCCGCATGACCCGGA+TGG 0.608961 2_2:-66345095 Msa0265930:CDS
GGTCTCCAAAAGCTAGGCAA+AGG 0.614877 2_2:-66342768 Msa0265930:CDS
AAATAACCATCCGGGTCATG+CGG 0.616074 2_2:+66345089 None:intergenic
AGAGGCCAATGAGACTACAA+TGG 0.616526 2_2:-66341910 Msa0265930:CDS
GCAACAACGGCCATAACTCA+CGG 0.617037 2_2:-66345283 Msa0265930:CDS
CATCAGACAAATAACCATCC+GGG 0.628665 2_2:+66345081 None:intergenic
CTAACAACTTCAAGGAAAGG+GGG 0.629370 2_2:+66341649 None:intergenic
CTAGGCAAAGGAGACTGGCG+AGG 0.631792 2_2:-66342756 Msa0265930:CDS
CTAAGTAGTAAGAAGTCACA+TGG 0.631808 2_2:-66341416 Msa0265930:three_prime_UTR
TCAAGAAAAGTGCCAGTATG+GGG 0.632856 2_2:-66345184 Msa0265930:CDS
CCCTTTGAAGAAGTCAACAA+AGG 0.636313 2_2:-66341801 Msa0265930:CDS
TTGAGAGACAGATTTAGTGA+TGG 0.636747 2_2:+66341978 None:intergenic
TAACCATCCGGGTCATGCGG+CGG 0.638437 2_2:+66345092 None:intergenic
TCCGACAGAGTAATGCTACC+AGG 0.640061 2_2:-66342665 Msa0265930:CDS
GCCAATACCAGTCATTCCAA+AGG 0.641238 2_2:-66341751 Msa0265930:CDS
ATGACTTGCTACTTGAGTAG+GGG 0.646346 2_2:+66342704 None:intergenic
GGATTCACACCAATGACGCA+AGG 0.652345 2_2:-66341879 Msa0265930:CDS
TAGGCAAAGGAGACTGGCGA+GGG 0.653435 2_2:-66342755 Msa0265930:CDS
TAACAACTTCAAGGAAAGGG+GGG 0.654354 2_2:+66341650 None:intergenic
TGCAACCGAGTCATCATCCG+CGG 0.654950 2_2:-66345343 Msa0265930:five_prime_UTR
AATAATCAAATATAGCCAAG+AGG 0.656600 2_2:-66341319 Msa0265930:three_prime_UTR
GTCATCACGAATCGCCGCCG+CGG 0.665212 2_2:+66345326 None:intergenic
TTTAGGTGTTCCATGGACTG+AGG 0.681364 2_2:-66342814 Msa0265930:intron
AGCGGTTCTGATCTAAACAG+TGG 0.708017 2_2:-66341582 Msa0265930:CDS
AACCGAGTCATCATCCGCGG+CGG 0.717472 2_2:-66345340 Msa0265930:five_prime_UTR
GTTCAAAACAAGGTGAACCG+GGG 0.719453 2_2:+66345114 None:intergenic
ACAATTATAGCCAAACCGAG+AGG 0.730520 2_2:+66341288 None:intergenic
TGCAATGAAAGCAATCACGA+CGG 0.733629 2_2:+66345362 None:intergenic
AATGTCTCATCTGAGCATTG+GGG 0.733687 2_2:-66341700 Msa0265930:CDS
AAGAATGATGAAGAGCAGCG+AGG 0.735471 2_2:+66345153 None:intergenic
GACAGAGTAATGCTACCAGG+AGG 0.755723 2_2:-66342662 Msa0265930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTAATTTTATTT+TGG - chr2_2:66341930-66341949 Msa0265930:CDS 0.0%
!! TAAAGAATAACAAAATTTAA+TGG + chr2_2:66342714-66342733 None:intergenic 10.0%
!! TTAAAAATTACAAATATTTG+TGG + chr2_2:66343494-66343513 None:intergenic 10.0%
!! AATAAAAAAGTTAATAAGAT+AGG + chr2_2:66344576-66344595 None:intergenic 10.0%
!!! TAAAAATGTTGATAATAACT+TGG - chr2_2:66341737-66341756 Msa0265930:CDS 15.0%
!!! TGTTAAGTTTTTATAAAATG+TGG - chr2_2:66343249-66343268 Msa0265930:intron 15.0%
!! TTAGTTTACTAGAAAAATTA+AGG - chr2_2:66343460-66343479 Msa0265930:intron 15.0%
!! TAGTTTACTAGAAAAATTAA+GGG - chr2_2:66343461-66343480 Msa0265930:intron 15.0%
!! CATAGATAAAAAATATGTTA+TGG + chr2_2:66344242-66344261 None:intergenic 15.0%
!!! TATTTTTGGTTTTGGTTTTT+TGG - chr2_2:66341987-66342006 Msa0265930:CDS 20.0%
!! TAATGTCATTATTGTTTCAT+TGG - chr2_2:66342117-66342136 Msa0265930:intron 20.0%
!! ATTAATGAACATATCATAAG+CGG - chr2_2:66342558-66342577 Msa0265930:intron 20.0%
!! GATAATATACAGTTAAGTAT+GGG + chr2_2:66342756-66342775 None:intergenic 20.0%
!! AGATAATATACAGTTAAGTA+TGG + chr2_2:66342757-66342776 None:intergenic 20.0%
!! TTAAAAAAGAATAGAACAGA+AGG - chr2_2:66342897-66342916 Msa0265930:intron 20.0%
!!! AATATCTGGAATTTATATTG+AGG - chr2_2:66342995-66343014 Msa0265930:intron 20.0%
!! TAAAAAAAACTTAGTGTAAC+AGG - chr2_2:66343344-66343363 Msa0265930:intron 20.0%
!! AAAAAAAACTTAGTGTAACA+GGG - chr2_2:66343345-66343364 Msa0265930:intron 20.0%
!! AATCTAATCAACAAGAAAAA+AGG + chr2_2:66343815-66343834 None:intergenic 20.0%
!! TTATGGTAATTAGCAAATAA+AGG + chr2_2:66344475-66344494 None:intergenic 20.0%
!!! TATTTGCTAATTACCATAAA+CGG - chr2_2:66344476-66344495 Msa0265930:intron 20.0%
!!! CATTATTGTTTCATTGGTTT+TGG - chr2_2:66342123-66342142 Msa0265930:intron 25.0%
! TTTCAACAAACCAAACAATT+AGG + chr2_2:66342535-66342554 None:intergenic 25.0%
! AATGACAACTAAAACGAATT+GGG + chr2_2:66342663-66342682 None:intergenic 25.0%
! AAATGACAACTAAAACGAAT+TGG + chr2_2:66342664-66342683 None:intergenic 25.0%
!! GTTGTATTGAACTTTGAAAA+CGG - chr2_2:66342833-66342852 Msa0265930:intron 25.0%
! AGCATAAAAATCATACATCT+AGG + chr2_2:66342933-66342952 None:intergenic 25.0%
! ATCTACTATTTGAAAGTTAC+TGG - chr2_2:66343044-66343063 Msa0265930:intron 25.0%
! AAAAAAACTTAGTGTAACAG+GGG - chr2_2:66343346-66343365 Msa0265930:intron 25.0%
!!! TTTAATTTGGTGCCATTTTT+TGG - chr2_2:66343568-66343587 Msa0265930:intron 25.0%
!!! TTAATTTGGTGCCATTTTTT+GGG - chr2_2:66343569-66343588 Msa0265930:intron 25.0%
!! ACTTTTGTAACAAGGATATA+AGG - chr2_2:66343618-66343637 Msa0265930:intron 25.0%
! CTTCTGGATTATGAATTAAA+GGG + chr2_2:66343651-66343670 None:intergenic 25.0%
!!! TGAGAGGCTTTAAATAAAAT+AGG + chr2_2:66343693-66343712 None:intergenic 25.0%
!! TTTGTCCTTTTGTATGTTTT+AGG - chr2_2:66343846-66343865 Msa0265930:intron 25.0%
! CATATATATTGCTTATAAGC+TGG + chr2_2:66344207-66344226 None:intergenic 25.0%
!!! TATGTTTTGAGAAAATACCT+TGG - chr2_2:66344258-66344277 Msa0265930:intron 25.0%
! ATAACTGTACTCTGTTTATA+TGG + chr2_2:66344300-66344319 None:intergenic 25.0%
!! ATTTGCTAATTACCATAAAC+GGG - chr2_2:66344477-66344496 Msa0265930:intron 25.0%
! ATTATAGCACAAATGAAAGA+TGG + chr2_2:66345196-66345215 None:intergenic 25.0%
! TACTTAGAAGTTAAACACTA+TGG + chr2_2:66345248-66345267 None:intergenic 25.0%
! AATAATCAAATATAGCCAAG+AGG - chr2_2:66345358-66345377 Msa0265930:five_prime_UTR 25.0%
! TTTCTTGATGATTGATCCAT+CGG + chr2_2:66341481-66341500 None:intergenic 30.0%
AATGAATTGTTCCTGATATC+TGG - chr2_2:66341957-66341976 Msa0265930:CDS 30.0%
!!! TATCTGGTGAAAGGTATTTT+TGG - chr2_2:66341973-66341992 Msa0265930:CDS 30.0%
!!! GTGAAAGGTATTTTTGGTTT+TGG - chr2_2:66341979-66341998 Msa0265930:CDS 30.0%
!!! GGTATCCACGTTTTATTTTA+TGG - chr2_2:66342008-66342027 Msa0265930:CDS 30.0%
GTGTTCCATAAAATAAAACG+TGG + chr2_2:66342016-66342035 None:intergenic 30.0%
ATAGGGGTTGAATTTATAGT+AGG - chr2_2:66342203-66342222 Msa0265930:intron 30.0%
TGAATTTATAGTAGGACACA+AGG - chr2_2:66342211-66342230 Msa0265930:intron 30.0%
GAATTTATAGTAGGACACAA+GGG - chr2_2:66342212-66342231 Msa0265930:intron 30.0%
GCAAATTAAGTTATCCAAAC+TGG + chr2_2:66342269-66342288 None:intergenic 30.0%
! TTACAGACATGAGTTTGTTT+GGG + chr2_2:66342599-66342618 None:intergenic 30.0%
! TTTACAGACATGAGTTTGTT+TGG + chr2_2:66342600-66342619 None:intergenic 30.0%
ATGACAACTAAAACGAATTG+GGG + chr2_2:66342662-66342681 None:intergenic 30.0%
TTATTGCACAGAGAAATAAG+TGG + chr2_2:66342784-66342803 None:intergenic 30.0%
! GAACTTTGAAAACGGAAAAT+AGG - chr2_2:66342841-66342860 Msa0265930:intron 30.0%
GAGTACATTTAAACATGGAA+AGG + chr2_2:66343104-66343123 None:intergenic 30.0%
TTCCATGTTTAAATGTACTC+AGG - chr2_2:66343104-66343123 Msa0265930:intron 30.0%
AACCTGAGTACATTTAAACA+TGG + chr2_2:66343109-66343128 None:intergenic 30.0%
CAGTTGTATTATGATCAGTT+TGG - chr2_2:66343289-66343308 Msa0265930:intron 30.0%
CTAAATACTATGTGTAACAG+TGG - chr2_2:66343315-66343334 Msa0265930:intron 30.0%
CTACAAGCCATAGTTTAATT+TGG - chr2_2:66343555-66343574 Msa0265930:intron 30.0%
AATGGCACCAAATTAAACTA+TGG + chr2_2:66343565-66343584 None:intergenic 30.0%
!!! TAATTTGGTGCCATTTTTTG+GGG - chr2_2:66343570-66343589 Msa0265930:intron 30.0%
AATGACAAATCCCCAAAAAA+TGG + chr2_2:66343583-66343602 None:intergenic 30.0%
CCTTCTGGATTATGAATTAA+AGG + chr2_2:66343652-66343671 None:intergenic 30.0%
CCTTTAATTCATAATCCAGA+AGG - chr2_2:66343649-66343668 Msa0265930:intron 30.0%
AAAGGAAAAACAAAGTTGAG+AGG + chr2_2:66343709-66343728 None:intergenic 30.0%
GAACACCTAAAACATACAAA+AGG + chr2_2:66343854-66343873 None:intergenic 30.0%
ATCTGAAGAAAATGTAGAAG+AGG - chr2_2:66344749-66344768 Msa0265930:intron 30.0%
!! TTTGGTGTTAGATTAACCGA+TGG - chr2_2:66341462-66341481 Msa0265930:three_prime_UTR 35.0%
!! ATCAAGAAAAGTGCCAGTAT+GGG - chr2_2:66341492-66341511 Msa0265930:three_prime_UTR 35.0%
TCATCAGACAAATAACCATC+CGG + chr2_2:66341600-66341619 None:intergenic 35.0%
!!! TACCTTTTTTTCTTTCGCTG+CGG + chr2_2:66341656-66341675 None:intergenic 35.0%
CACCAAACGAAAAGTAAAGT+TGG - chr2_2:66341780-66341799 Msa0265930:CDS 35.0%
!! CACCAACTTTACTTTTCGTT+TGG + chr2_2:66341785-66341804 None:intergenic 35.0%
CAAACGAAAAGTAAAGTTGG+TGG - chr2_2:66341783-66341802 Msa0265930:CDS 35.0%
AATACCTTTCACCAGATATC+AGG + chr2_2:66341971-66341990 None:intergenic 35.0%
! GGAACACATTTTCGTTTGAT+TGG - chr2_2:66342029-66342048 Msa0265930:CDS 35.0%
! TTTGATTGGTCACGAAATGA+CGG - chr2_2:66342043-66342062 Msa0265930:CDS 35.0%
CTCTCAAAATACTAGTACCA+TGG + chr2_2:66342165-66342184 None:intergenic 35.0%
!! ATTTTGAGAGTTGAGACCAT+TGG - chr2_2:66342175-66342194 Msa0265930:intron 35.0%
TTGAGACCATTGGAGTTAAT+AGG - chr2_2:66342185-66342204 Msa0265930:intron 35.0%
TGAGACCATTGGAGTTAATA+GGG - chr2_2:66342186-66342205 Msa0265930:intron 35.0%
CTTACTTTCATAAGCTCTTC+AGG + chr2_2:66342350-66342369 None:intergenic 35.0%
!! TGGTTGATGAACTTCATCAA+AGG + chr2_2:66342506-66342525 None:intergenic 35.0%
ACCACTTGAACCTAATTGTT+TGG - chr2_2:66342522-66342541 Msa0265930:intron 35.0%
ACCAAACAATTAGGTTCAAG+TGG + chr2_2:66342526-66342545 None:intergenic 35.0%
GTGGAAAACGGTTTAATATC+TGG - chr2_2:66342981-66343000 Msa0265930:intron 35.0%
ACAAGGGGATAAAAAAGCTA+GGG + chr2_2:66343414-66343433 None:intergenic 35.0%
AACAAGGGGATAAAAAAGCT+AGG + chr2_2:66343415-66343434 None:intergenic 35.0%
AGTATGACTGCTTTAACAAG+GGG + chr2_2:66343429-66343448 None:intergenic 35.0%
GAGTATGACTGCTTTAACAA+GGG + chr2_2:66343430-66343449 None:intergenic 35.0%
TGAGTATGACTGCTTTAACA+AGG + chr2_2:66343431-66343450 None:intergenic 35.0%
! AAGCTGTGACTTTTGTAACA+AGG - chr2_2:66343610-66343629 Msa0265930:intron 35.0%
!! AGACTGTTGATTCATTAAGC+AGG - chr2_2:66343781-66343800 Msa0265930:intron 35.0%
CAACAAGAAAAAAGGATGCT+CGG + chr2_2:66343807-66343826 None:intergenic 35.0%
!! TGTATGTTTTAGGTGTTCCA+TGG - chr2_2:66343856-66343875 Msa0265930:intron 35.0%
GGAAGAACATAGATTGTTCT+TGG - chr2_2:66343884-66343903 Msa0265930:intron 35.0%
GAACATAGATTGTTCTTGGT+TGG - chr2_2:66343888-66343907 Msa0265930:intron 35.0%
!! CACGTAATTTTGTTGTGTCA+AGG - chr2_2:66343949-66343968 Msa0265930:intron 35.0%
! GTACTGGTGTTAATAAGGAT+AGG + chr2_2:66344183-66344202 None:intergenic 35.0%
! AGAAAATACCTTGGTGTGTT+TGG - chr2_2:66344267-66344286 Msa0265930:intron 35.0%
TTCAATATCCAGTTACAACG+AGG + chr2_2:66344508-66344527 None:intergenic 35.0%
! GGTTGTGATTTTCCATTACA+AGG + chr2_2:66344681-66344700 None:intergenic 35.0%
TTGAGAGACAGATTTAGTGA+TGG + chr2_2:66344702-66344721 None:intergenic 35.0%
CAAGTCAGAATATGAACCAA+TGG - chr2_2:66344719-66344738 Msa0265930:intron 35.0%
GAAAATGAGGCAGGTAAATA+AGG + chr2_2:66344834-66344853 None:intergenic 35.0%
! TTTTCCATATGGCCATCAAT+TGG - chr2_2:66344849-66344868 Msa0265930:intron 35.0%
!! CCTTTGTTGACTTCTTCAAA+GGG + chr2_2:66344879-66344898 None:intergenic 35.0%
!! TCCTTTGTTGACTTCTTCAA+AGG + chr2_2:66344880-66344899 None:intergenic 35.0%
ACAAGTTCATCAACATTGAC+AGG + chr2_2:66344954-66344973 None:intergenic 35.0%
! TGTCAATGTTGATGAACTTG+TGG - chr2_2:66344953-66344972 Msa0265930:intron 35.0%
! GTCAATGTTGATGAACTTGT+GGG - chr2_2:66344954-66344973 Msa0265930:intron 35.0%
TCCTAACAACTTCAAGGAAA+GGG + chr2_2:66345033-66345052 None:intergenic 35.0%
! AGTTTGAGGCTTTCAAAGTA+TGG - chr2_2:66345139-66345158 Msa0265930:CDS 35.0%
! GTAGTAACTAAGCCTTCTTT+TGG - chr2_2:66345170-66345189 Msa0265930:CDS 35.0%
AATGAAAGATGGCCAAAAGA+AGG + chr2_2:66345185-66345204 None:intergenic 35.0%
CTAAGTAGTAAGAAGTCACA+TGG - chr2_2:66345261-66345280 Msa0265930:CDS 35.0%
TGCAATGAAAGCAATCACGA+CGG + chr2_2:66341318-66341337 None:intergenic 40.0%
!! CATCAAGAAAAGTGCCAGTA+TGG - chr2_2:66341491-66341510 Msa0265930:three_prime_UTR 40.0%
!! TCAAGAAAAGTGCCAGTATG+GGG - chr2_2:66341493-66341512 Msa0265930:three_prime_UTR 40.0%
CATCAGACAAATAACCATCC+GGG + chr2_2:66341599-66341618 None:intergenic 40.0%
TGGTTATTTGTCTGATGACC+CGG - chr2_2:66341602-66341621 Msa0265930:CDS 40.0%
! AAAGCAGAAGAAGCATGAAC+CGG + chr2_2:66341624-66341643 None:intergenic 40.0%
ACCACACATTATAAGCGTGT+TGG - chr2_2:66341809-66341828 Msa0265930:CDS 40.0%
TCCAACACGCTTATAATGTG+TGG + chr2_2:66341813-66341832 None:intergenic 40.0%
TGTTCCTGATATCTGGTGAA+AGG - chr2_2:66341964-66341983 Msa0265930:CDS 40.0%
!!! TCATTGGTTTTGGTTCCGTA+TGG - chr2_2:66342133-66342152 Msa0265930:intron 40.0%
! GTACCATGGATTGTACCATA+CGG + chr2_2:66342151-66342170 None:intergenic 40.0%
GAGACCATTGGAGTTAATAG+GGG - chr2_2:66342187-66342206 Msa0265930:intron 40.0%
TCAACCCCTATTAACTCCAA+TGG + chr2_2:66342194-66342213 None:intergenic 40.0%
ACACAAGGGAATGTTTACGT+TGG - chr2_2:66342226-66342245 Msa0265930:intron 40.0%
AGGGAATGTTTACGTTGGTA+TGG - chr2_2:66342231-66342250 Msa0265930:intron 40.0%
ACGTTGGTATGGTACGAATT+AGG - chr2_2:66342242-66342261 Msa0265930:intron 40.0%
TTTCATAAGCTCTTCAGGAG+AGG + chr2_2:66342345-66342364 None:intergenic 40.0%
! TTTTTCTTCCGTTAACCCCT+CGG - chr2_2:66342382-66342401 Msa0265930:intron 40.0%
!!! GACCCTAGTATTTTGGAGTT+CGG - chr2_2:66342418-66342437 Msa0265930:intron 40.0%
! AAAACCAGAGTTCGATTCGT+GGG + chr2_2:66342481-66342500 None:intergenic 40.0%
GCTTTCTTCCACAAACAACA+CGG - chr2_2:66342950-66342969 Msa0265930:intron 40.0%
CTTTCTTCCACAAACAACAC+GGG - chr2_2:66342951-66342970 Msa0265930:intron 40.0%
TTTCTTCCACAAACAACACG+GGG - chr2_2:66342952-66342971 Msa0265930:intron 40.0%
TCAAGCAACAAACTCTTGTC+TGG + chr2_2:66343073-66343092 None:intergenic 40.0%
!! GTTGTGTCTGGCTTTAATAC+AGG - chr2_2:66343374-66343393 Msa0265930:intron 40.0%
TTTCCTTTACCATGTCTTCG+AGG - chr2_2:66343721-66343740 Msa0265930:intron 40.0%
AACTAATCTCCTCGAAGACA+TGG + chr2_2:66343733-66343752 None:intergenic 40.0%
!! ATGACTTGCTACTTGAGTAG+GGG + chr2_2:66343976-66343995 None:intergenic 40.0%
!! CATGACTTGCTACTTGAGTA+GGG + chr2_2:66343977-66343996 None:intergenic 40.0%
GAATGAATACTGACCACATC+AGG + chr2_2:66344071-66344090 None:intergenic 40.0%
! CTGGTGTTAATAAGGATAGG+AGG + chr2_2:66344180-66344199 None:intergenic 40.0%
! CTGGTGTACTGGTGTTAATA+AGG + chr2_2:66344188-66344207 None:intergenic 40.0%
TTGCTTATAAGCTGGTGTAC+TGG + chr2_2:66344199-66344218 None:intergenic 40.0%
TGAGAAACTCAACAGAGTCA+AGG + chr2_2:66344385-66344404 None:intergenic 40.0%
GGAAGTAGTATTTGCTCTTC+TGG + chr2_2:66344639-66344658 None:intergenic 40.0%
GAGAACTCACAACCTTGTAA+TGG - chr2_2:66344666-66344685 Msa0265930:intron 40.0%
TCTTCAGATGTAGCTTCCAT+TGG + chr2_2:66344738-66344757 None:intergenic 40.0%
TGATCCCATTGTAGTCTCAT+TGG + chr2_2:66344775-66344794 None:intergenic 40.0%
GAGACTACAATGGGATCAAA+TGG - chr2_2:66344777-66344796 Msa0265930:intron 40.0%
ATGAGGCAGGTAAATAAGGT+GGG + chr2_2:66344830-66344849 None:intergenic 40.0%
AATGAGGCAGGTAAATAAGG+TGG + chr2_2:66344831-66344850 None:intergenic 40.0%
! TACCTGCCTCATTTTCCATA+TGG - chr2_2:66344838-66344857 Msa0265930:intron 40.0%
TGATGGCCATATGGAAAATG+AGG + chr2_2:66344847-66344866 None:intergenic 40.0%
! CCCTTTGAAGAAGTCAACAA+AGG - chr2_2:66344876-66344895 Msa0265930:intron 40.0%
!! TCCTTTGGAATGACTGGTAT+TGG + chr2_2:66344930-66344949 None:intergenic 40.0%
TCAACATTGACAGGTTCCTT+TGG + chr2_2:66344945-66344964 None:intergenic 40.0%
GAATGTCTCATCTGAGCATT+GGG - chr2_2:66344976-66344995 Msa0265930:intron 40.0%
! AATGTCTCATCTGAGCATTG+GGG - chr2_2:66344977-66344996 Msa0265930:intron 40.0%
TAACAACTTCAAGGAAAGGG+GGG + chr2_2:66345030-66345049 None:intergenic 40.0%
CTAACAACTTCAAGGAAAGG+GGG + chr2_2:66345031-66345050 None:intergenic 40.0%
CCTAACAACTTCAAGGAAAG+GGG + chr2_2:66345032-66345051 None:intergenic 40.0%
CTCCTAACAACTTCAAGGAA+AGG + chr2_2:66345034-66345053 None:intergenic 40.0%
TTTAGATCAGAACCGCTAAC+TGG + chr2_2:66345092-66345111 None:intergenic 40.0%
AAAGCCTCAAACTGCTTGAA+TGG + chr2_2:66345132-66345151 None:intergenic 40.0%
GCTCAGGTTAGATCAATTCT+TGG - chr2_2:66345293-66345312 Msa0265930:CDS 40.0%
ACAATTATAGCCAAACCGAG+AGG + chr2_2:66345392-66345411 None:intergenic 40.0%
!! CTCGGTTTGGCTATAATTGT+TGG - chr2_2:66345392-66345411 Msa0265930:five_prime_UTR 40.0%
AAGAATGATGAAGAGCAGCG+AGG + chr2_2:66341527-66341546 None:intergenic 45.0%
GTTCAAAACAAGGTGAACCG+GGG + chr2_2:66341566-66341585 None:intergenic 45.0%
GGTTCAAAACAAGGTGAACC+GGG + chr2_2:66341567-66341586 None:intergenic 45.0%
CGGTTCAAAACAAGGTGAAC+CGG + chr2_2:66341568-66341587 None:intergenic 45.0%
AAATAACCATCCGGGTCATG+CGG + chr2_2:66341591-66341610 None:intergenic 45.0%
! AAGCAGAAGAAGCATGAACC+GGG + chr2_2:66341623-66341642 None:intergenic 45.0%
!!! TTTTTTTCTTTCGCTGCGGC+GGG + chr2_2:66341652-66341671 None:intergenic 45.0%
!!! CTTTTTTTCTTTCGCTGCGG+CGG + chr2_2:66341653-66341672 None:intergenic 45.0%
GTTCCGTATGGTACAATCCA+TGG - chr2_2:66342145-66342164 Msa0265930:intron 45.0%
GGTACGAATTAGGTCCAGTT+TGG - chr2_2:66342252-66342271 Msa0265930:intron 45.0%
AAAATACTAGGGTCCTTCCC+CGG + chr2_2:66342412-66342431 None:intergenic 45.0%
GGCCGAACTCCAAAATACTA+GGG + chr2_2:66342423-66342442 None:intergenic 45.0%
AGGCCGAACTCCAAAATACT+AGG + chr2_2:66342424-66342443 None:intergenic 45.0%
!!! TATTTTGGAGTTCGGCCTTG+AGG - chr2_2:66342426-66342445 Msa0265930:intron 45.0%
GCCTTGAGGTAAGTATAGCT+TGG - chr2_2:66342440-66342459 Msa0265930:intron 45.0%
GCCAAGCTATACTTACCTCA+AGG + chr2_2:66342444-66342463 None:intergenic 45.0%
! CAAAACCAGAGTTCGATTCG+TGG + chr2_2:66342482-66342501 None:intergenic 45.0%
TTCTTCCACAAACAACACGG+GGG - chr2_2:66342953-66342972 Msa0265930:intron 45.0%
TCTCCTCGAAGACATGGTAA+AGG + chr2_2:66343727-66343746 None:intergenic 45.0%
! GAGGAGATTAGTTGCTGCAT+CGG - chr2_2:66343740-66343759 Msa0265930:intron 45.0%
! TTTAGGTGTTCCATGGACTG+AGG - chr2_2:66343863-66343882 Msa0265930:intron 45.0%
CTATGTTCTTCCTCAGTCCA+TGG + chr2_2:66343876-66343895 None:intergenic 45.0%
!! TTGGTTGGTCTCCAAAAGCT+AGG - chr2_2:66343903-66343922 Msa0265930:intron 45.0%
!! AGTCTCCTTTGCCTAGCTTT+TGG + chr2_2:66343917-66343936 None:intergenic 45.0%
AAAAGCTAGGCAAAGGAGAC+TGG - chr2_2:66343916-66343935 Msa0265930:intron 45.0%
!! GCATGACTTGCTACTTGAGT+AGG + chr2_2:66343978-66343997 None:intergenic 45.0%
TCCTGGTAGCATTACTCTGT+CGG + chr2_2:66344016-66344035 None:intergenic 45.0%
! ACGTTCCAGTCTTTTCGACA+TGG - chr2_2:66344043-66344062 Msa0265930:intron 45.0%
GATTCAAGCCAAACACACCA+AGG + chr2_2:66344278-66344297 None:intergenic 45.0%
AACGAGGATGAACCCGTTTA+TGG + chr2_2:66344492-66344511 None:intergenic 45.0%
! TCTGGCATCGAAGTTGAATC+TGG + chr2_2:66344621-66344640 None:intergenic 45.0%
CAAGGTTGTGAGTTCTCAGA+AGG + chr2_2:66344663-66344682 None:intergenic 45.0%
AGAGGCCAATGAGACTACAA+TGG - chr2_2:66344767-66344786 Msa0265930:intron 45.0%
GAGGCCAATGAGACTACAAT+GGG - chr2_2:66344768-66344787 Msa0265930:intron 45.0%
! AGCTCCAATTGATGGCCATA+TGG + chr2_2:66344856-66344875 None:intergenic 45.0%
TCAAAGGGAGCTCCAATTGA+TGG + chr2_2:66344864-66344883 None:intergenic 45.0%
AGGAGAGACATCGTATCATC+AGG - chr2_2:66344896-66344915 Msa0265930:intron 45.0%
!! GAATGACTGGTATTGGCTTG+AGG + chr2_2:66344923-66344942 None:intergenic 45.0%
GCCAATACCAGTCATTCCAA+AGG - chr2_2:66344926-66344945 Msa0265930:intron 45.0%
!! ACAGGTTCCTTTGGAATGAC+TGG + chr2_2:66344936-66344955 None:intergenic 45.0%
GGAATGTCTCATCTGAGCAT+TGG - chr2_2:66344975-66344994 Msa0265930:intron 45.0%
CCCCTTTCCTTGAAGTTGTT+AGG - chr2_2:66345029-66345048 Msa0265930:CDS 45.0%
! TGGAATGCTGATTGCCTTGA+GGG + chr2_2:66345059-66345078 None:intergenic 45.0%
! ATGGAATGCTGATTGCCTTG+AGG + chr2_2:66345060-66345079 None:intergenic 45.0%
CATGCAAATGCTCCAGTTAG+CGG - chr2_2:66345077-66345096 Msa0265930:CDS 45.0%
! AGCGGTTCTGATCTAAACAG+TGG - chr2_2:66345095-66345114 Msa0265930:CDS 45.0%
AACGCCATTCAAGCAGTTTG+AGG - chr2_2:66345125-66345144 Msa0265930:CDS 45.0%
!! CACATGGTGTTATGTAGCTC+AGG - chr2_2:66345277-66345296 Msa0265930:CDS 45.0%
TGCTCTCACTGCAGCAACAA+CGG - chr2_2:66341381-66341400 Msa0265930:three_prime_UTR 50.0%
GCAACAACGGCCATAACTCA+CGG - chr2_2:66341394-66341413 Msa0265930:three_prime_UTR 50.0%
ACGGACATGTCCGTGAGTTA+TGG + chr2_2:66341407-66341426 None:intergenic 50.0%
! GAGGTTTAGGTTCCCCATAC+TGG + chr2_2:66341508-66341527 None:intergenic 50.0%
GATGAAGAGCAGCGAGGTTT+AGG + chr2_2:66341521-66341540 None:intergenic 50.0%
TCATGCGGCGGTTCAAAACA+AGG + chr2_2:66341576-66341595 None:intergenic 50.0%
CGCCGCAGCGAAAGAAAAAA+AGG - chr2_2:66341651-66341670 Msa0265930:CDS 50.0%
AAATACTAGGGTCCTTCCCC+GGG + chr2_2:66342411-66342430 None:intergenic 50.0%
! GGGGAAGGACCCTAGTATTT+TGG - chr2_2:66342411-66342430 Msa0265930:intron 50.0%
TCAACCCACGAATCGAACTC+TGG - chr2_2:66342474-66342493 Msa0265930:intron 50.0%
ACAGGGGTAACTGTTGTGTC+TGG - chr2_2:66343362-66343381 Msa0265930:intron 50.0%
GTAGCAAAGTAGCAGCCTTC+TGG + chr2_2:66343667-66343686 None:intergenic 50.0%
GGTCTCCAAAAGCTAGGCAA+AGG - chr2_2:66343909-66343928 Msa0265930:intron 50.0%
TCCGACAGAGTAATGCTACC+AGG - chr2_2:66344012-66344031 Msa0265930:intron 50.0%
GACAGAGTAATGCTACCAGG+AGG - chr2_2:66344015-66344034 Msa0265930:intron 50.0%
AGGAGCCATGTCGAAAAGAC+TGG + chr2_2:66344051-66344070 None:intergenic 50.0%
TTTCGACATGGCTCCTGATG+TGG - chr2_2:66344055-66344074 Msa0265930:intron 50.0%
GGGTTCATCCTCGTTGTAAC+TGG - chr2_2:66344497-66344516 Msa0265930:intron 50.0%
GGTTGTGAGTTCTCAGAAGG+TGG + chr2_2:66344660-66344679 None:intergenic 50.0%
GGATTCACACCAATGACGCA+AGG - chr2_2:66344798-66344817 Msa0265930:intron 50.0%
GGGAAGAATCCTTGCGTCAT+TGG + chr2_2:66344810-66344829 None:intergenic 50.0%
GGCCATATGGAAAATGAGGC+AGG + chr2_2:66344843-66344862 None:intergenic 50.0%
!! TCTGAGCATTGGGGAAACAC+AGG - chr2_2:66344986-66345005 Msa0265930:intron 50.0%
AACTTCAAGGAAAGGGGGGA+AGG + chr2_2:66345026-66345045 None:intergenic 50.0%
GGGCTCTCCTAACAACTTCA+AGG + chr2_2:66345039-66345058 None:intergenic 50.0%
AGTTGTTAGGAGAGCCCTCA+AGG - chr2_2:66345042-66345061 Msa0265930:CDS 50.0%
! CGCTAACTGGAGCATTTGCA+TGG + chr2_2:66345079-66345098 None:intergenic 50.0%
CAAGAGGTCCATGTTCCTCT+CGG - chr2_2:66345374-66345393 Msa0265930:five_prime_UTR 50.0%
TAGCCAAACCGAGAGGAACA+TGG + chr2_2:66345385-66345404 None:intergenic 50.0%
TGCAACCGAGTCATCATCCG+CGG - chr2_2:66341334-66341353 Msa0265930:three_prime_UTR 55.0%
ACCAAAAAGCTTCACCCCGC+CGG + chr2_2:66341448-66341467 None:intergenic 55.0%
! TTTTGAACCGCCGCATGACC+CGG - chr2_2:66341578-66341597 Msa0265930:CDS 55.0%
AATACTAGGGTCCTTCCCCG+GGG + chr2_2:66342410-66342429 None:intergenic 55.0%
! CACAAACAACACGGGGGTGT+CGG - chr2_2:66342959-66342978 Msa0265930:intron 55.0%
TAGGCAAAGGAGACTGGCGA+GGG - chr2_2:66343922-66343941 Msa0265930:intron 55.0%
ACTGGAACGTCTCTTCCTCC+TGG + chr2_2:66344033-66344052 None:intergenic 55.0%
CGAGAGGAACATGGACCTCT+TGG + chr2_2:66345376-66345395 None:intergenic 55.0%
GGTCCATGTTCCTCTCGGTT+TGG - chr2_2:66345379-66345398 Msa0265930:five_prime_UTR 55.0%
AACCGAGTCATCATCCGCGG+CGG - chr2_2:66341337-66341356 Msa0265930:three_prime_UTR 60.0%
GGCGGCGATTCGTGATGACT+CGG - chr2_2:66341355-66341374 Msa0265930:three_prime_UTR 60.0%
TCTTCTTCGCCGCTGAACCC+CGG - chr2_2:66341546-66341565 Msa0265930:exon 60.0%
CAAGGTGAACCGGGGTTCAG+CGG + chr2_2:66341558-66341577 None:intergenic 60.0%
TAACCATCCGGGTCATGCGG+CGG + chr2_2:66341588-66341607 None:intergenic 60.0%
!! CGACACCCCCGTGTTGTTTG+TGG + chr2_2:66342961-66342980 None:intergenic 60.0%
!! AAACAACACGGGGGTGTCGG+TGG - chr2_2:66342962-66342981 Msa0265930:intron 60.0%
!! ACGGGGGTGTCGGTGGAAAA+CGG - chr2_2:66342969-66342988 Msa0265930:intron 60.0%
CTAGGCAAAGGAGACTGGCG+AGG - chr2_2:66343921-66343940 Msa0265930:intron 60.0%
GTCATCACGAATCGCCGCCG+CGG + chr2_2:66341354-66341373 None:intergenic 65.0%
! GCCGGCGGGGTGAAGCTTTT+TGG - chr2_2:66341444-66341463 Msa0265930:three_prime_UTR 65.0%
CCGGGGAACCGAGGGGTTAA+CGG + chr2_2:66342393-66342412 None:intergenic 65.0%
CCGTTAACCCCTCGGTTCCC+CGG - chr2_2:66342390-66342409 Msa0265930:intron 65.0%
CGTTAACCCCTCGGTTCCCC+GGG - chr2_2:66342391-66342410 Msa0265930:intron 65.0%
GTTAACCCCTCGGTTCCCCG+GGG - chr2_2:66342392-66342411 Msa0265930:intron 65.0%
CGCCGCCGCGGATGATGACT+CGG + chr2_2:66341342-66341361 None:intergenic 70.0%
AAGCTTCACCCCGCCGGCAG+CGG + chr2_2:66341442-66341461 None:intergenic 70.0%
GAACCGCCGCATGACCCGGA+TGG - chr2_2:66341582-66341601 Msa0265930:CDS 70.0%
TCCTTCCCCGGGGAACCGAG+GGG + chr2_2:66342400-66342419 None:intergenic 70.0%
GTCCTTCCCCGGGGAACCGA+GGG + chr2_2:66342401-66342420 None:intergenic 70.0%
GCAGCGGCGGCGCTTCTCGA+CGG + chr2_2:66341426-66341445 None:intergenic 75.0%
!! TCGAGAAGCGCCGCCGCTGC+CGG - chr2_2:66341426-66341445 Msa0265930:three_prime_UTR 75.0%
ACCCCTCGGTTCCCCGGGGA+AGG - chr2_2:66342396-66342415 Msa0265930:intron 75.0%
GGTCCTTCCCCGGGGAACCG+AGG + chr2_2:66342402-66342421 None:intergenic 75.0%
!!! AGAAGCGCCGCCGCTGCCGG+CGG - chr2_2:66341429-66341448 Msa0265930:three_prime_UTR 80.0%
! CTTCACCCCGCCGGCAGCGG+CGG + chr2_2:66341439-66341458 None:intergenic 80.0%
!!! GAAGCGCCGCCGCTGCCGGC+GGG - chr2_2:66341430-66341449 Msa0265930:three_prime_UTR 85.0%
!! AAGCGCCGCCGCTGCCGGCG+GGG - chr2_2:66341431-66341450 Msa0265930:three_prime_UTR 85.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 66341284 66345415 66341284 ID=Msa0265930;Name=Msa0265930
chr2_2 mRNA 66341284 66345415 66341284 ID=Msa0265930-mRNA-1;Parent=Msa0265930;Name=Msa0265930-mRNA-1;_AED=0.04;_eAED=0.04;_QI=85|1|1|1|1|1|3|270|347
chr2_2 exon 66341284 66342084 66341284 ID=Msa0265930-mRNA-1:exon:21007;Parent=Msa0265930-mRNA-1
chr2_2 exon 66342623 66342831 66342623 ID=Msa0265930-mRNA-1:exon:21006;Parent=Msa0265930-mRNA-1
chr2_2 exon 66345027 66345415 66345027 ID=Msa0265930-mRNA-1:exon:21005;Parent=Msa0265930-mRNA-1
chr2_2 five_prime_UTR 66345331 66345415 66345331 ID=Msa0265930-mRNA-1:five_prime_utr;Parent=Msa0265930-mRNA-1
chr2_2 CDS 66345027 66345330 66345027 ID=Msa0265930-mRNA-1:cds;Parent=Msa0265930-mRNA-1
chr2_2 CDS 66342623 66342831 66342623 ID=Msa0265930-mRNA-1:cds;Parent=Msa0265930-mRNA-1
chr2_2 CDS 66341554 66342084 66341554 ID=Msa0265930-mRNA-1:cds;Parent=Msa0265930-mRNA-1
chr2_2 three_prime_UTR 66341284 66341553 66341284 ID=Msa0265930-mRNA-1:three_prime_utr;Parent=Msa0265930-mRNA-1
Gene Sequence

>Msa0265930

ATGACTCGGCGTTGCTCTCACTGCAGCAACAACGGCCATAACTCACGGACATGTCCGTCGAGAAGCGCCGCCGCTGCCGGCGGGGTGAAGCTTTTTGGTGTTAGATTAACCGATGGATCAATCATCAAGAAAAGTGCCAGTATGGGGAACCTAAACCTCGCTGCTCTTCATCATTCTTCTTCTTCGCCGCTGAACCCCGGTTCACCTTGTTTTGAACCGCCGCATGACCCGGATGGTTATTTGTCTGATGACCCGGTTCATGCTTCTTCTGCTTTCGCTACCCGCCGCAGCGAAAGAAAAAAAGGTGTTCCATGGACTGAGGAAGAACATAGATTGTTCTTGGTTGGTCTCCAAAAGCTAGGCAAAGGAGACTGGCGAGGGATAGCACGTAATTTTGTTGTGTCAAGGACCCCTACTCAAGTAGCAAGTCATGCACAAAAGTACTTTATCCGACAGAGTAATGCTACCAGGAGGAAGAGACGTTCCAGTCTTTTCGACATGGCTCCTGATGTGTGTCCAGATTCAACTTCGATGCCAGAAGAGCAAATACTACTTCCACCTTCTGAGAACTCACAACCTTGTAATGGAAAATCACAACCATCACTAAATCTGTCTCTCAAGTCAGAATATGAACCAATGGAAGCTACATCTGAAGAAAATGTAGAAGAGGCCAATGAGACTACAATGGGATCAAATGGATTCACACCAATGACGCAAGGATTCTTCCCACCTTATTTACCTGCCTCATTTTCCATATGGCCATCAATTGGAGCTCCCTTTGAAGAAGTCAACAAAGGAGAGACATCGTATCATCAGGTCCTCAAGCCAATACCAGTCATTCCAAAGGAACCTGTCAATGTTGATGAACTTGTGGGAATGTCTCATCTGAGCATTGGGGAAACACAGGCTCTTGATAGAGAGCCTTCCCCCCTTTCCTTGAAGTTGTTAGGAGAGCCCTCAAGGCAATCAGCATTCCATGCAAATGCTCCAGTTAGCGGTTCTGATCTAAACAGTGGCAAGAACAACGCCATTCAAGCAGTTTGA
Protein sequence

>Msa0265930

MTRRCSHCSNNGHNSRTCPSRSAAAAGGVKLFGVRLTDGSIIKKSASMGNLNLAALHHSSSSPLNPGSPCFEPPHDPDGYLSDDPVHASSAFATRRSERKKGVPWTEEEHRLFLVGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMAPDVCPDSTSMPEEQILLPPSENSQPCNGKSQPSLNLSLKSEYEPMEATSEENVEEANETTMGSNGFTPMTQGFFPPYLPASFSIWPSIGAPFEEVNKGETSYHQVLKPIPVIPKEPVNVDELVGMSHLSIGETQALDREPSPLSLKLLGEPSRQSAFHANAPVSGSDLNSGKNNAIQAV*