AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0303860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0303860 MtrunA17_Chr2g0331031 94.915 354 10 2 1 347 1 353 0.0 688
Msa0303860 MtrunA17_Chr4g0055931 53.009 349 128 14 1 336 1 326 2.64e-100 299
Msa0303860 MtrunA17_Chr6g0488471 55.233 172 63 4 1 168 1 162 2.23e-50 169
Msa0303860 MtrunA17_Chr5g0415191 50.000 204 58 7 1 183 3 183 1.85e-48 165
Msa0303860 MtrunA17_Chr8g0389241 50.289 173 72 4 3 168 4 169 1.81e-44 154
Msa0303860 MtrunA17_Chr4g0059701 50.920 163 74 5 22 183 6 163 4.38e-33 124
Msa0303860 MtrunA17_Chr1g0210471 61.538 91 34 1 97 187 118 207 6.22e-33 122
Msa0303860 MtrunA17_Chr4g0062741 74.286 70 18 0 98 167 133 202 1.78e-32 123
Msa0303860 MtrunA17_Chr3g0104071 47.651 149 60 5 98 245 142 273 2.31e-32 123
Msa0303860 MtrunA17_Chr5g0429521 73.239 71 19 0 98 168 127 197 6.09e-32 121
Msa0303860 MtrunA17_Chr7g0241761 74.648 71 18 0 98 168 135 205 3.50e-31 119
Msa0303860 MtrunA17_Chr1g0162081 53.636 110 43 1 98 207 117 218 8.45e-31 118
Msa0303860 MtrunA17_Chr5g0436501 62.222 90 32 1 98 185 120 209 4.53e-30 115
Msa0303860 MtrunA17_Chr3g0092621 69.014 71 21 1 103 172 84 154 3.60e-29 110
Msa0303860 MtrunA17_Chr3g0135671 42.529 174 77 5 1 168 3 159 5.57e-28 109
Msa0303860 MtrunA17_Chr6g0452791 61.429 70 24 1 84 153 64 130 5.48e-22 91.3
Msa0303860 MtrunA17_Chr5g0409841 45.161 93 49 1 99 189 88 180 4.77e-21 90.5
Msa0303860 MtrunA17_Chr5g0440731 52.113 71 31 1 99 166 101 171 3.88e-20 89.4
Msa0303860 MtrunA17_Chr5g0440741 56.923 65 25 1 105 166 102 166 1.63e-19 87.4
Msa0303860 MtrunA17_Chr5g0409831 57.895 57 24 0 99 155 73 129 2.56e-17 80.1
Msa0303860 MtrunA17_Chr8g0364731 62.069 58 20 1 112 167 10 67 4.57e-15 72.8
Msa0303860 MtrunA17_Chr8g0365011 39.806 103 42 3 85 167 68 170 7.91e-15 73.9
Msa0303860 MtrunA17_Chr1g0192061 53.846 65 25 2 105 165 63 126 3.70e-14 70.1
Msa0303860 MtrunA17_Chr5g0432921 51.562 64 27 2 105 165 115 177 2.03e-13 68.9
Msa0303860 MtrunA17_Chr5g0432941 50.000 64 28 2 105 165 115 177 6.03e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0303860 AT3G16350.1 54.476 391 130 14 1 347 1 387 2.66e-108 322
Msa0303860 AT5G47390.1 48.021 379 137 14 1 338 1 360 7.55e-90 274
Msa0303860 AT1G70000.1 54.315 197 62 8 1 186 1 180 1.70e-51 172
Msa0303860 AT1G70000.2 54.315 197 62 8 1 186 1 180 1.70e-51 172
Msa0303860 AT5G61620.1 39.370 254 116 8 1 247 8 230 6.58e-48 164
Msa0303860 AT5G56840.1 51.479 169 69 4 1 168 1 157 2.95e-47 160
Msa0303860 AT2G38090.1 65.625 96 33 0 80 175 118 213 4.43e-35 130
Msa0303860 AT5G58900.1 74.286 70 18 0 98 167 136 205 3.32e-32 122
Msa0303860 AT1G49010.1 74.286 70 18 0 98 167 129 198 8.38e-32 122
Msa0303860 AT1G74840.2 48.503 167 75 6 29 192 24 182 5.85e-30 115
Msa0303860 AT5G08520.1 70.000 70 21 0 98 167 113 182 7.07e-30 116
Msa0303860 AT5G04760.1 65.278 72 25 0 97 168 93 164 1.38e-29 113
Msa0303860 AT1G74840.1 48.503 167 75 6 29 192 24 182 1.89e-29 114
Msa0303860 AT3G11280.2 71.429 70 20 0 98 167 122 191 1.23e-28 112
Msa0303860 AT3G11280.1 71.429 70 20 0 98 167 122 191 1.23e-28 112
Msa0303860 AT5G01200.1 70.000 70 21 0 98 167 141 210 2.03e-28 111
Msa0303860 AT1G19000.2 46.629 178 66 8 29 191 22 185 4.68e-28 111
Msa0303860 AT1G19000.1 46.629 178 66 8 29 191 22 185 4.68e-28 111
Msa0303860 AT5G05790.2 46.491 114 55 1 98 211 126 233 5.48e-27 108
Msa0303860 AT5G05790.1 46.491 114 55 1 98 211 126 233 5.48e-27 108
Msa0303860 AT4G09450.1 51.613 93 45 0 80 172 68 160 3.36e-24 98.6
Msa0303860 AT3G10580.2 50.000 96 43 2 73 168 68 158 2.71e-23 97.4
Msa0303860 AT3G10580.1 58.667 75 29 1 94 168 86 158 3.88e-23 97.8
Msa0303860 AT5G23650.1 53.425 73 34 0 96 168 113 185 2.74e-20 90.9
Msa0303860 AT3G10590.1 45.349 86 44 2 85 168 91 175 1.30e-16 77.8

Find 128 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTCTCCTTTGCCTAGCTTT+TGG 0.260546 2_3:+61077031 None:intergenic
GAAGCGCCGCCGCTGCCGGC+GGG 0.281178 2_3:-61079502 Msa0303860:CDS
CATCAAGAAAAGTGCCAGTA+TGG 0.298362 2_3:-61079441 Msa0303860:CDS
GGAAGAACATAGATTGTTCT+TGG 0.306357 2_3:-61077061 Msa0303860:CDS
GGAAGTAGTATTTGCTCTTC+TGG 0.308188 2_3:+61076309 None:intergenic
CTCGGTTTGGCTATAATTGT+TGG 0.320531 2_3:-61075553 Msa0303860:three_prime_UTR
GAAAATGAGGCAGGTAAATA+AGG 0.320772 2_3:+61076114 None:intergenic
GATGAAGAGCAGCGAGGTTT+AGG 0.321604 2_3:+61079414 None:intergenic
AGTTTGAGGCTTTCAAAGTA+TGG 0.334376 2_3:-61075806 Msa0303860:exon
TCGAGAAGCGCCGCCGCTGC+CGG 0.338043 2_3:-61079506 Msa0303860:CDS
TCCTTTGGAATGACTGGTAT+TGG 0.340477 2_3:+61076018 None:intergenic
CCCCTTTCCTTGAAGTTGTT+AGG 0.350389 2_3:-61075916 Msa0303860:CDS
TCTGGCATCGAAGTTGAATC+TGG 0.363477 2_3:+61076327 None:intergenic
TGGAATGCTGATTGCCTTGA+GGG 0.363738 2_3:+61075889 None:intergenic
CTTCACCCCGCCGGCAGCGG+CGG 0.373251 2_3:+61079496 None:intergenic
GTAGTAACTAAGCCTTCTTT+TGG 0.378146 2_3:-61075775 Msa0303860:three_prime_UTR
TCAACATTGACAGGTTCCTT+TGG 0.380571 2_3:+61076003 None:intergenic
TTTAGATCAGAACCGCTAAC+TGG 0.381028 2_3:+61075856 None:intergenic
TCAAAGGGAGCTCCAATTGA+TGG 0.384606 2_3:+61076084 None:intergenic
TACTTAGAAGTTAAACACTA+TGG 0.389922 2_3:+61075700 None:intergenic
TGATCCCATTGTAGTCTCAT+TGG 0.391511 2_3:+61076173 None:intergenic
GAATGTCTCATCTGAGCATT+GGG 0.393213 2_3:-61075969 Msa0303860:CDS
GCTCAGGTTAGATCAATTCT+TGG 0.395743 2_3:-61075652 Msa0303860:three_prime_UTR
TCCTTTGTTGACTTCTTCAA+AGG 0.400771 2_3:+61076068 None:intergenic
AGAAGCGCCGCCGCTGCCGG+CGG 0.417090 2_3:-61079503 Msa0303860:CDS
AAAGCCTCAAACTGCTTGAA+TGG 0.420085 2_3:+61075816 None:intergenic
AAGCGCCGCCGCTGCCGGCG+GGG 0.428113 2_3:-61079501 Msa0303860:CDS
CGAGAGGAACATGGACCTCT+TGG 0.431558 2_3:+61075572 None:intergenic
GAGACTACAATGGGATCAAA+TGG 0.433570 2_3:-61076168 Msa0303860:CDS
CCTTTGTTGACTTCTTCAAA+GGG 0.434334 2_3:+61076069 None:intergenic
CGGTTCAAAACAAGGTGAAC+CGG 0.438885 2_3:+61079367 None:intergenic
TCCTAACAACTTCAAGGAAA+GGG 0.440079 2_3:+61075915 None:intergenic
TCTTCAGATGTAGCTTCCAT+TGG 0.445737 2_3:+61076210 None:intergenic
AAAAGCTAGGCAAAGGAGAC+TGG 0.448710 2_3:-61077029 Msa0303860:CDS
GGGAAGAATCCTTGCGTCAT+TGG 0.453748 2_3:+61076138 None:intergenic
ACAGGTTCCTTTGGAATGAC+TGG 0.453964 2_3:+61076012 None:intergenic
GAGGTTTAGGTTCCCCATAC+TGG 0.455596 2_3:+61079427 None:intergenic
AAAGCAGAAGAAGCATGAAC+CGG 0.455984 2_3:+61079311 None:intergenic
AAGCTTCACCCCGCCGGCAG+CGG 0.457103 2_3:+61079493 None:intergenic
CACATGGTGTTATGTAGCTC+AGG 0.457543 2_3:-61075668 Msa0303860:three_prime_UTR
GAACATAGATTGTTCTTGGT+TGG 0.461435 2_3:-61077057 Msa0303860:CDS
CATGACTTGCTACTTGAGTA+GGG 0.462555 2_3:+61076971 None:intergenic
GGTCCATGTTCCTCTCGGTT+TGG 0.463154 2_3:-61075566 Msa0303860:three_prime_UTR
AACGCCATTCAAGCAGTTTG+AGG 0.463617 2_3:-61075820 Msa0303860:exon
GCATGACTTGCTACTTGAGT+AGG 0.464793 2_3:+61076970 None:intergenic
GAATGAATACTGACCACATC+AGG 0.481403 2_3:+61076877 None:intergenic
TTTCTTGATGATTGATCCAT+CGG 0.482732 2_3:+61079454 None:intergenic
AGCTCCAATTGATGGCCATA+TGG 0.483931 2_3:+61076092 None:intergenic
GGGCTCTCCTAACAACTTCA+AGG 0.485368 2_3:+61075909 None:intergenic
TCATCAGATAAATAACCATC+CGG 0.488271 2_3:+61079335 None:intergenic
CGCCGCCGCGGATGATGACT+CGG 0.488916 2_3:+61079593 None:intergenic
CATGCAAATGCTCCAGTTAG+CGG 0.489459 2_3:-61075868 Msa0303860:CDS
ACAAGTTCATCAACATTGAC+AGG 0.494176 2_3:+61075994 None:intergenic
ACGGACATGTCCGTGAGTTA+TGG 0.495840 2_3:+61079528 None:intergenic
TCTTCTTCGCCGCTGAACCC+CGG 0.498426 2_3:-61079386 Msa0303860:CDS
GAGAACTCACAACCTTGTAA+TGG 0.500646 2_3:-61076279 Msa0303860:CDS
TTTCGACATGGCTCCTGATG+TGG 0.516858 2_3:-61076890 Msa0303860:intron
CCTAACAACTTCAAGGAAAG+GGG 0.517543 2_3:+61075916 None:intergenic
GCAGCGGCGGCGCTTCTCGA+CGG 0.517789 2_3:+61079509 None:intergenic
CTATGTTCTTCCTCAGTCCA+TGG 0.518156 2_3:+61077072 None:intergenic
GGTTCAAAACAAGGTGAACC+GGG 0.521484 2_3:+61079368 None:intergenic
TGATGGCCATATGGAAAATG+AGG 0.522407 2_3:+61076101 None:intergenic
AGGAGAGACATCGTATCATC+AGG 0.522529 2_3:-61076049 Msa0303860:CDS
AGGAGCCATGTCGAAAAGAC+TGG 0.523291 2_3:+61076897 None:intergenic
ATCAAGAAAAGTGCCAGTAT+GGG 0.525026 2_3:-61079440 Msa0303860:CDS
CGCTAACTGGAGCATTTGCA+TGG 0.525907 2_3:+61075869 None:intergenic
GGAATGTCTCATCTGAGCAT+TGG 0.531337 2_3:-61075970 Msa0303860:CDS
AATGAAAGATGGCCAAAAGA+AGG 0.531941 2_3:+61075763 None:intergenic
ATTATAGCACAAATGAAAGA+TGG 0.533034 2_3:+61075752 None:intergenic
TTGGTTGGTCTCCAAAAGCT+AGG 0.538073 2_3:-61077042 Msa0303860:CDS
ATCTGAAGAAAATGTAGAAG+AGG 0.540720 2_3:-61076196 Msa0303860:CDS
ATGAGGCAGGTAAATAAGGT+GGG 0.541274 2_3:+61076118 None:intergenic
CAAGAGGTCCATGTTCCTCT+CGG 0.542677 2_3:-61075571 Msa0303860:three_prime_UTR
CTCCTAACAACTTCAAGGAA+AGG 0.542864 2_3:+61075914 None:intergenic
TCCTGGTAGCATTACTCTGT+CGG 0.543171 2_3:+61076932 None:intergenic
GGCCATATGGAAAATGAGGC+AGG 0.543383 2_3:+61076105 None:intergenic
ATGGAATGCTGATTGCCTTG+AGG 0.546697 2_3:+61075888 None:intergenic
GGCGGCGATTCGTGATGACT+CGG 0.556358 2_3:-61079577 Msa0303860:exon
CAAGTCAGAATATGAACCAA+TGG 0.562551 2_3:-61076226 Msa0303860:CDS
CAAGGTGAACCGGGGTTCAG+CGG 0.568397 2_3:+61079377 None:intergenic
CAAGGTTGTGAGTTCTCAGA+AGG 0.569930 2_3:+61076285 None:intergenic
GAATGACTGGTATTGGCTTG+AGG 0.572196 2_3:+61076025 None:intergenic
AAATAACCATCCGGGTCATG+CGG 0.572298 2_3:+61079344 None:intergenic
GAGGCCAATGAGACTACAAT+GGG 0.576022 2_3:-61076177 Msa0303860:CDS
ACTGGAACGTCTCTTCCTCC+TGG 0.576071 2_3:+61076915 None:intergenic
TGGTTATTTATCTGATGACC+CGG 0.576739 2_3:-61079330 Msa0303860:CDS
TCTGAGCATTGGGGAAACAC+AGG 0.576890 2_3:-61075959 Msa0303860:CDS
AGTTGTTAGGAGAGCCCTCA+AGG 0.579322 2_3:-61075903 Msa0303860:CDS
AAGCAGAAGAAGCATGAACC+GGG 0.580723 2_3:+61079312 None:intergenic
AATGAGGCAGGTAAATAAGG+TGG 0.582975 2_3:+61076117 None:intergenic
TCATGCGGCGGTTCAAAACA+AGG 0.584178 2_3:+61079359 None:intergenic
GTCAATGTTGATGAACTTGT+GGG 0.584457 2_3:-61075991 Msa0303860:CDS
TAGCCAAACCGAGAGGAACA+TGG 0.589318 2_3:+61075563 None:intergenic
TTTGGTGTTAGATTAACCGA+TGG 0.592133 2_3:-61079470 Msa0303860:CDS
TGTCAATGTTGATGAACTTG+TGG 0.593101 2_3:-61075992 Msa0303860:CDS
GAAAGCAATCACGACGACGA+CGG 0.598716 2_3:+61079623 None:intergenic
TGCTCTCACTGCAGCAACAA+CGG 0.601199 2_3:-61079551 Msa0303860:CDS
GGTTGTGAGTTCTCAGAAGG+TGG 0.602477 2_3:+61076288 None:intergenic
GAACCGCCGCATGACCCGGA+TGG 0.608961 2_3:-61079350 Msa0303860:CDS
GGTCTCCAAAAGCTAGGCAA+AGG 0.614877 2_3:-61077036 Msa0303860:CDS
AGAGGCCAATGAGACTACAA+TGG 0.616526 2_3:-61076178 Msa0303860:CDS
GCAACAACGGCCATAACTCA+CGG 0.617037 2_3:-61079538 Msa0303860:CDS
CTAACAACTTCAAGGAAAGG+GGG 0.629370 2_3:+61075917 None:intergenic
CTAGGCAAAGGAGACTGGCG+AGG 0.631792 2_3:-61077024 Msa0303860:CDS
CTAAGTAGTAAGAAGTCACA+TGG 0.631808 2_3:-61075684 Msa0303860:three_prime_UTR
TCAAGAAAAGTGCCAGTATG+GGG 0.632856 2_3:-61079439 Msa0303860:CDS
AGCAATCACGACGACGACGG+AGG 0.633733 2_3:+61079626 None:intergenic
CCCTTTGAAGAAGTCAACAA+AGG 0.636313 2_3:-61076069 Msa0303860:CDS
TTGAGAGACAGATTTAGTGA+TGG 0.636747 2_3:+61076246 None:intergenic
TAACCATCCGGGTCATGCGG+CGG 0.638437 2_3:+61079347 None:intergenic
CATCAGATAAATAACCATCC+GGG 0.638735 2_3:+61079336 None:intergenic
TCCGACAGAGTAATGCTACC+AGG 0.640061 2_3:-61076933 Msa0303860:CDS
GCCAATACCAGTCATTCCAA+AGG 0.641238 2_3:-61076019 Msa0303860:CDS
ATGACTTGCTACTTGAGTAG+GGG 0.646346 2_3:+61076972 None:intergenic
GGATTCACACCAATGACGCA+AGG 0.652345 2_3:-61076147 Msa0303860:CDS
TAGGCAAAGGAGACTGGCGA+GGG 0.653435 2_3:-61077023 Msa0303860:CDS
TAACAACTTCAAGGAAAGGG+GGG 0.654354 2_3:+61075918 None:intergenic
TGCAACCGAGTCATCATCCG+CGG 0.654950 2_3:-61079598 Msa0303860:five_prime_UTR
AATAATCAAATATAGCCAAG+AGG 0.656600 2_3:-61075587 Msa0303860:three_prime_UTR
GTCATCACGAATCGCCGCCG+CGG 0.665212 2_3:+61079581 None:intergenic
TTTAGGTGTTCCATGGACTG+AGG 0.681364 2_3:-61077082 Msa0303860:intron
AGCGGTTCTGATCTAAACAG+TGG 0.708017 2_3:-61075850 Msa0303860:CDS
AACCGAGTCATCATCCGCGG+CGG 0.717472 2_3:-61079595 Msa0303860:five_prime_UTR
GTTCAAAACAAGGTGAACCG+GGG 0.719453 2_3:+61079369 None:intergenic
ACAATTATAGCCAAACCGAG+AGG 0.730520 2_3:+61075556 None:intergenic
AATGTCTCATCTGAGCATTG+GGG 0.733687 2_3:-61075968 Msa0303860:CDS
AAGAATGATGAAGAGCAGCG+AGG 0.735471 2_3:+61079408 None:intergenic
GACAGAGTAATGCTACCAGG+AGG 0.755723 2_3:-61076930 Msa0303860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATATGATGATTTTATTT+TGG - chr2_3:61076190-61076209 Msa0303860:CDS 10.0%
!! TAAAGAATAACAAAATTTAA+TGG + chr2_3:61076974-61076993 None:intergenic 10.0%
!! TTAAAAATTACAAATATTTG+TGG + chr2_3:61077753-61077772 None:intergenic 10.0%
!! AATAAAAAAGTTAATAAGAT+AGG + chr2_3:61078835-61078854 None:intergenic 10.0%
!! TAAAAATGTTGTTAATAACT+TGG - chr2_3:61076012-61076031 Msa0303860:CDS 15.0%
!!! TGTTAAGTTTTTATAAAATG+TGG - chr2_3:61077508-61077527 Msa0303860:intron 15.0%
!! TTAGTTTACTAGAAAAATTA+AGG - chr2_3:61077719-61077738 Msa0303860:intron 15.0%
!! TAGTTTACTAGAAAAATTAA+GGG - chr2_3:61077720-61077739 Msa0303860:intron 15.0%
!! CATAGATAAAAAATATGTTA+TGG + chr2_3:61078501-61078520 None:intergenic 15.0%
!!! TATTTTTGGTTATGGTTTTT+TGG - chr2_3:61076247-61076266 Msa0303860:CDS 20.0%
!! TAATGTCATTATTGTTTCAT+TGG - chr2_3:61076376-61076395 Msa0303860:intron 20.0%
!! ATTAATGAACATATCATAAG+CGG - chr2_3:61076818-61076837 Msa0303860:intron 20.0%
!! GATAATATACAGTTAAGTAT+TGG + chr2_3:61077016-61077035 None:intergenic 20.0%
!! TTAAAAAAGAATAGAACAGA+AGG - chr2_3:61077156-61077175 Msa0303860:intron 20.0%
!!! AATATCTGGAATTTATATTG+AGG - chr2_3:61077254-61077273 Msa0303860:intron 20.0%
!! TAAAAAAAACTTAGTGTAAC+AGG - chr2_3:61077603-61077622 Msa0303860:intron 20.0%
!! AAAAAAAACTTAGTGTAACA+GGG - chr2_3:61077604-61077623 Msa0303860:intron 20.0%
!! AATCTAATCAACAAGAAAAA+AGG + chr2_3:61078074-61078093 None:intergenic 20.0%
!! TTATGGTAATTAGCAAATAA+AGG + chr2_3:61078734-61078753 None:intergenic 20.0%
!!! TATTTGCTAATTACCATAAA+CGG - chr2_3:61078735-61078754 Msa0303860:intron 20.0%
!!! CATTATTGTTTCATTGGTTT+TGG - chr2_3:61076382-61076401 Msa0303860:intron 25.0%
! TTTCAACAAACCAAACAATT+AGG + chr2_3:61076795-61076814 None:intergenic 25.0%
! AATGACAACTAAAACGAATT+GGG + chr2_3:61076923-61076942 None:intergenic 25.0%
! AAATGACAACTAAAACGAAT+TGG + chr2_3:61076924-61076943 None:intergenic 25.0%
!! GTTGTATTGAACTTTGAAAA+CGG - chr2_3:61077093-61077112 Msa0303860:intron 25.0%
! AGCATAAAAATCATACATCT+AGG + chr2_3:61077192-61077211 None:intergenic 25.0%
! ATCTACTATTTGAAAGTTAC+TGG - chr2_3:61077303-61077322 Msa0303860:intron 25.0%
! AAAAAAACTTAGTGTAACAG+GGG - chr2_3:61077605-61077624 Msa0303860:intron 25.0%
!!! TTTAATTTGGTGCCATTTTT+TGG - chr2_3:61077827-61077846 Msa0303860:intron 25.0%
!!! TTAATTTGGTGCCATTTTTT+GGG - chr2_3:61077828-61077847 Msa0303860:intron 25.0%
!! ACTTTTGTAACAAGGATATA+AGG - chr2_3:61077877-61077896 Msa0303860:intron 25.0%
! CTTCTGGATTATGAATTAAA+GGG + chr2_3:61077910-61077929 None:intergenic 25.0%
!!! TGAGAGGCTTTAAATAAAAT+AGG + chr2_3:61077952-61077971 None:intergenic 25.0%
!! TTTGTCCTTTTGTATGTTTT+AGG - chr2_3:61078105-61078124 Msa0303860:intron 25.0%
! CATATATATTGCTTATAAGC+TGG + chr2_3:61078466-61078485 None:intergenic 25.0%
!!! TATGTTTTGAGAAAATACCT+TGG - chr2_3:61078517-61078536 Msa0303860:intron 25.0%
! ATAACTGTACTCTGTTTATA+TGG + chr2_3:61078559-61078578 None:intergenic 25.0%
!! ATTTGCTAATTACCATAAAC+GGG - chr2_3:61078736-61078755 Msa0303860:intron 25.0%
! ATTATAGCACAAATGAAAGA+TGG + chr2_3:61079455-61079474 None:intergenic 25.0%
! TACTTAGAAGTTAAACACTA+TGG + chr2_3:61079507-61079526 None:intergenic 25.0%
! AATAATCAAATATAGCCAAG+AGG - chr2_3:61079617-61079636 Msa0303860:five_prime_UTR 25.0%
! TTTCTTGATGATTGATCCAT+CGG + chr2_3:61075753-61075772 None:intergenic 30.0%
TCATCAGATAAATAACCATC+CGG + chr2_3:61075872-61075891 None:intergenic 30.0%
AATGAATTGTTCCTGATATC+TGG - chr2_3:61076217-61076236 Msa0303860:CDS 30.0%
!!! TATCTGGTGAAAGGTATTTT+TGG - chr2_3:61076233-61076252 Msa0303860:CDS 30.0%
!!! GTGAAAGGTATTTTTGGTTA+TGG - chr2_3:61076239-61076258 Msa0303860:CDS 30.0%
!!! GGTATCCACGTTTTATTTTA+TGG - chr2_3:61076268-61076287 Msa0303860:CDS 30.0%
GTGTTCCATAAAATAAAACG+TGG + chr2_3:61076276-61076295 None:intergenic 30.0%
ATAGGGGTTGAATTTATAGT+AGG - chr2_3:61076462-61076481 Msa0303860:intron 30.0%
TGAATTTATAGTAGGACACA+AGG - chr2_3:61076470-61076489 Msa0303860:intron 30.0%
GAATTTATAGTAGGACACAA+GGG - chr2_3:61076471-61076490 Msa0303860:intron 30.0%
GCAAATTAAGTTATCCAAAC+TGG + chr2_3:61076528-61076547 None:intergenic 30.0%
ATGACAACTAAAACGAATTG+GGG + chr2_3:61076922-61076941 None:intergenic 30.0%
TTATTGCACAGAGAAATAAG+TGG + chr2_3:61077044-61077063 None:intergenic 30.0%
! GAACTTTGAAAACGGAAAAT+AGG - chr2_3:61077101-61077120 Msa0303860:intron 30.0%
GAGTACATTTAAACATGGAA+AGG + chr2_3:61077363-61077382 None:intergenic 30.0%
TTCCATGTTTAAATGTACTC+AGG - chr2_3:61077363-61077382 Msa0303860:intron 30.0%
AACCTGAGTACATTTAAACA+TGG + chr2_3:61077368-61077387 None:intergenic 30.0%
CAGTTGTATTATGATCAGTT+TGG - chr2_3:61077548-61077567 Msa0303860:intron 30.0%
CTAAATACTATGTGTAACAG+TGG - chr2_3:61077574-61077593 Msa0303860:intron 30.0%
CTACAAGCCATAGTTTAATT+TGG - chr2_3:61077814-61077833 Msa0303860:intron 30.0%
AATGGCACCAAATTAAACTA+TGG + chr2_3:61077824-61077843 None:intergenic 30.0%
!!! TAATTTGGTGCCATTTTTTG+GGG - chr2_3:61077829-61077848 Msa0303860:intron 30.0%
AATGACAAATCCCCAAAAAA+TGG + chr2_3:61077842-61077861 None:intergenic 30.0%
CCTTCTGGATTATGAATTAA+AGG + chr2_3:61077911-61077930 None:intergenic 30.0%
CCTTTAATTCATAATCCAGA+AGG - chr2_3:61077908-61077927 Msa0303860:intron 30.0%
AAAGGAAAAACAAAGTTGAG+AGG + chr2_3:61077968-61077987 None:intergenic 30.0%
GAACACCTAAAACATACAAA+AGG + chr2_3:61078113-61078132 None:intergenic 30.0%
ATCTGAAGAAAATGTAGAAG+AGG - chr2_3:61079008-61079027 Msa0303860:intron 30.0%
!! TTTGGTGTTAGATTAACCGA+TGG - chr2_3:61075734-61075753 Msa0303860:three_prime_UTR 35.0%
!! ATCAAGAAAAGTGCCAGTAT+GGG - chr2_3:61075764-61075783 Msa0303860:three_prime_UTR 35.0%
CATCAGATAAATAACCATCC+GGG + chr2_3:61075871-61075890 None:intergenic 35.0%
TGGTTATTTATCTGATGACC+CGG - chr2_3:61075874-61075893 Msa0303860:CDS 35.0%
!!! TACCTTTTTTTCTTTCGCTG+CGG + chr2_3:61075928-61075947 None:intergenic 35.0%
CACCAAACGAAAAGTAAAGT+TGG - chr2_3:61076055-61076074 Msa0303860:CDS 35.0%
!! CACCAACTTTACTTTTCGTT+TGG + chr2_3:61076060-61076079 None:intergenic 35.0%
CAAACGAAAAGTAAAGTTGG+TGG - chr2_3:61076058-61076077 Msa0303860:CDS 35.0%
AATACCTTTCACCAGATATC+AGG + chr2_3:61076231-61076250 None:intergenic 35.0%
! GGAACACATTTTCGTTTGAT+TGG - chr2_3:61076289-61076308 Msa0303860:CDS 35.0%
! TTTGATTGGTCACGAAATGA+CGG - chr2_3:61076303-61076322 Msa0303860:CDS 35.0%
TTGAGACCATTGGAGTTAAT+AGG - chr2_3:61076444-61076463 Msa0303860:intron 35.0%
TGAGACCATTGGAGTTAATA+GGG - chr2_3:61076445-61076464 Msa0303860:intron 35.0%
CTTACTTTCATAAGCTCTTC+AGG + chr2_3:61076609-61076628 None:intergenic 35.0%
!! TGGTTGATGAACTTCATCAA+AGG + chr2_3:61076766-61076785 None:intergenic 35.0%
! TTACCGACATGAGTTTGTTT+GGG + chr2_3:61076859-61076878 None:intergenic 35.0%
! TTTACCGACATGAGTTTGTT+TGG + chr2_3:61076860-61076879 None:intergenic 35.0%
GTGGAAAACGGTTTAATATC+TGG - chr2_3:61077240-61077259 Msa0303860:intron 35.0%
ACAAGGGGATAAAAAAGCTA+GGG + chr2_3:61077673-61077692 None:intergenic 35.0%
AACAAGGGGATAAAAAAGCT+AGG + chr2_3:61077674-61077693 None:intergenic 35.0%
AGTATGACTGCTTTAACAAG+GGG + chr2_3:61077688-61077707 None:intergenic 35.0%
GAGTATGACTGCTTTAACAA+GGG + chr2_3:61077689-61077708 None:intergenic 35.0%
TGAGTATGACTGCTTTAACA+AGG + chr2_3:61077690-61077709 None:intergenic 35.0%
! AAGCTGTGACTTTTGTAACA+AGG - chr2_3:61077869-61077888 Msa0303860:intron 35.0%
!! AGACTGTTGATTCATTAAGC+AGG - chr2_3:61078040-61078059 Msa0303860:intron 35.0%
CAACAAGAAAAAAGGATGCT+CGG + chr2_3:61078066-61078085 None:intergenic 35.0%
!! TGTATGTTTTAGGTGTTCCA+TGG - chr2_3:61078115-61078134 Msa0303860:intron 35.0%
GGAAGAACATAGATTGTTCT+TGG - chr2_3:61078143-61078162 Msa0303860:intron 35.0%
GAACATAGATTGTTCTTGGT+TGG - chr2_3:61078147-61078166 Msa0303860:intron 35.0%
!! CACGTAATTTTGTTGTGTCA+AGG - chr2_3:61078208-61078227 Msa0303860:intron 35.0%
! GTACTGGTGTTAATAAGGAT+AGG + chr2_3:61078442-61078461 None:intergenic 35.0%
! AGAAAATACCTTGGTGTGTT+TGG - chr2_3:61078526-61078545 Msa0303860:intron 35.0%
TTCAATATCCAGTTACAACG+AGG + chr2_3:61078767-61078786 None:intergenic 35.0%
! GGTTGTGATTTTCCATTACA+AGG + chr2_3:61078940-61078959 None:intergenic 35.0%
TTGAGAGACAGATTTAGTGA+TGG + chr2_3:61078961-61078980 None:intergenic 35.0%
CAAGTCAGAATATGAACCAA+TGG - chr2_3:61078978-61078997 Msa0303860:intron 35.0%
GAAAATGAGGCAGGTAAATA+AGG + chr2_3:61079093-61079112 None:intergenic 35.0%
! TTTTCCATATGGCCATCAAT+TGG - chr2_3:61079108-61079127 Msa0303860:intron 35.0%
!! CCTTTGTTGACTTCTTCAAA+GGG + chr2_3:61079138-61079157 None:intergenic 35.0%
!! TCCTTTGTTGACTTCTTCAA+AGG + chr2_3:61079139-61079158 None:intergenic 35.0%
ACAAGTTCATCAACATTGAC+AGG + chr2_3:61079213-61079232 None:intergenic 35.0%
! TGTCAATGTTGATGAACTTG+TGG - chr2_3:61079212-61079231 Msa0303860:intron 35.0%
! GTCAATGTTGATGAACTTGT+GGG - chr2_3:61079213-61079232 Msa0303860:intron 35.0%
TCCTAACAACTTCAAGGAAA+GGG + chr2_3:61079292-61079311 None:intergenic 35.0%
! AGTTTGAGGCTTTCAAAGTA+TGG - chr2_3:61079398-61079417 Msa0303860:CDS 35.0%
! GTAGTAACTAAGCCTTCTTT+TGG - chr2_3:61079429-61079448 Msa0303860:CDS 35.0%
AATGAAAGATGGCCAAAAGA+AGG + chr2_3:61079444-61079463 None:intergenic 35.0%
CTAAGTAGTAAGAAGTCACA+TGG - chr2_3:61079520-61079539 Msa0303860:CDS 35.0%
!! CATCAAGAAAAGTGCCAGTA+TGG - chr2_3:61075763-61075782 Msa0303860:three_prime_UTR 40.0%
!! TCAAGAAAAGTGCCAGTATG+GGG - chr2_3:61075765-61075784 Msa0303860:three_prime_UTR 40.0%
! AAAGCAGAAGAAGCATGAAC+CGG + chr2_3:61075896-61075915 None:intergenic 40.0%
ACCACACATTATAAGCGTGT+TGG - chr2_3:61076084-61076103 Msa0303860:CDS 40.0%
TCCAACACGCTTATAATGTG+TGG + chr2_3:61076088-61076107 None:intergenic 40.0%
TGTTCCTGATATCTGGTGAA+AGG - chr2_3:61076224-61076243 Msa0303860:CDS 40.0%
!!! TCATTGGTTTTGGTTCCGTA+TGG - chr2_3:61076392-61076411 Msa0303860:intron 40.0%
! GTACCATGGATTGTACCATA+CGG + chr2_3:61076410-61076429 None:intergenic 40.0%
CTCTCAAAACACTAGTACCA+TGG + chr2_3:61076424-61076443 None:intergenic 40.0%
!!! GTTTTGAGAGTTGAGACCAT+TGG - chr2_3:61076434-61076453 Msa0303860:intron 40.0%
GAGACCATTGGAGTTAATAG+GGG - chr2_3:61076446-61076465 Msa0303860:intron 40.0%
TCAACCCCTATTAACTCCAA+TGG + chr2_3:61076453-61076472 None:intergenic 40.0%
ACACAAGGGAATGTTTACGT+TGG - chr2_3:61076485-61076504 Msa0303860:intron 40.0%
AGGGAATGTTTACGTTGGTA+TGG - chr2_3:61076490-61076509 Msa0303860:intron 40.0%
ACGTTGGTATGGTACGAATT+AGG - chr2_3:61076501-61076520 Msa0303860:intron 40.0%
TTTCATAAGCTCTTCAGGAG+AGG + chr2_3:61076604-61076623 None:intergenic 40.0%
! TTTTTCTTCCGTTAACCCCT+CGG - chr2_3:61076642-61076661 Msa0303860:intron 40.0%
!!! GACCCTAGTATTTTGGAGTT+CGG - chr2_3:61076678-61076697 Msa0303860:intron 40.0%
! AAAACCAGAGTTCGATTCGT+GGG + chr2_3:61076741-61076760 None:intergenic 40.0%
ACCACTTGAGCCTAATTGTT+TGG - chr2_3:61076782-61076801 Msa0303860:intron 40.0%
ACCAAACAATTAGGCTCAAG+TGG + chr2_3:61076786-61076805 None:intergenic 40.0%
TCTCCCAAACAAACTCATGT+CGG - chr2_3:61076853-61076872 Msa0303860:intron 40.0%
GCTTTCTTCCACAAACAACA+CGG - chr2_3:61077209-61077228 Msa0303860:intron 40.0%
CTTTCTTCCACAAACAACAC+GGG - chr2_3:61077210-61077229 Msa0303860:intron 40.0%
TTTCTTCCACAAACAACACG+GGG - chr2_3:61077211-61077230 Msa0303860:intron 40.0%
TCAAGCAACAAACTCTTGTC+TGG + chr2_3:61077332-61077351 None:intergenic 40.0%
!! GTTGTGTCTGGCTTTAATAC+AGG - chr2_3:61077633-61077652 Msa0303860:intron 40.0%
TTTCCTTTACCATGTCTTCG+AGG - chr2_3:61077980-61077999 Msa0303860:intron 40.0%
AACTAATCTCCTCGAAGACA+TGG + chr2_3:61077992-61078011 None:intergenic 40.0%
!! ATGACTTGCTACTTGAGTAG+GGG + chr2_3:61078235-61078254 None:intergenic 40.0%
!! CATGACTTGCTACTTGAGTA+GGG + chr2_3:61078236-61078255 None:intergenic 40.0%
GAATGAATACTGACCACATC+AGG + chr2_3:61078330-61078349 None:intergenic 40.0%
! CTGGTGTTAATAAGGATAGG+AGG + chr2_3:61078439-61078458 None:intergenic 40.0%
! CTGGTGTACTGGTGTTAATA+AGG + chr2_3:61078447-61078466 None:intergenic 40.0%
TTGCTTATAAGCTGGTGTAC+TGG + chr2_3:61078458-61078477 None:intergenic 40.0%
TGAGAAACTCAACAGAGTCA+AGG + chr2_3:61078644-61078663 None:intergenic 40.0%
GGAAGTAGTATTTGCTCTTC+TGG + chr2_3:61078898-61078917 None:intergenic 40.0%
GAGAACTCACAACCTTGTAA+TGG - chr2_3:61078925-61078944 Msa0303860:intron 40.0%
TCTTCAGATGTAGCTTCCAT+TGG + chr2_3:61078997-61079016 None:intergenic 40.0%
TGATCCCATTGTAGTCTCAT+TGG + chr2_3:61079034-61079053 None:intergenic 40.0%
GAGACTACAATGGGATCAAA+TGG - chr2_3:61079036-61079055 Msa0303860:intron 40.0%
ATGAGGCAGGTAAATAAGGT+GGG + chr2_3:61079089-61079108 None:intergenic 40.0%
AATGAGGCAGGTAAATAAGG+TGG + chr2_3:61079090-61079109 None:intergenic 40.0%
! TACCTGCCTCATTTTCCATA+TGG - chr2_3:61079097-61079116 Msa0303860:intron 40.0%
TGATGGCCATATGGAAAATG+AGG + chr2_3:61079106-61079125 None:intergenic 40.0%
! CCCTTTGAAGAAGTCAACAA+AGG - chr2_3:61079135-61079154 Msa0303860:intron 40.0%
!! TCCTTTGGAATGACTGGTAT+TGG + chr2_3:61079189-61079208 None:intergenic 40.0%
TCAACATTGACAGGTTCCTT+TGG + chr2_3:61079204-61079223 None:intergenic 40.0%
GAATGTCTCATCTGAGCATT+GGG - chr2_3:61079235-61079254 Msa0303860:intron 40.0%
! AATGTCTCATCTGAGCATTG+GGG - chr2_3:61079236-61079255 Msa0303860:intron 40.0%
TAACAACTTCAAGGAAAGGG+GGG + chr2_3:61079289-61079308 None:intergenic 40.0%
CTAACAACTTCAAGGAAAGG+GGG + chr2_3:61079290-61079309 None:intergenic 40.0%
CCTAACAACTTCAAGGAAAG+GGG + chr2_3:61079291-61079310 None:intergenic 40.0%
CTCCTAACAACTTCAAGGAA+AGG + chr2_3:61079293-61079312 None:intergenic 40.0%
TTTAGATCAGAACCGCTAAC+TGG + chr2_3:61079351-61079370 None:intergenic 40.0%
AAAGCCTCAAACTGCTTGAA+TGG + chr2_3:61079391-61079410 None:intergenic 40.0%
GCTCAGGTTAGATCAATTCT+TGG - chr2_3:61079552-61079571 Msa0303860:CDS 40.0%
ACAATTATAGCCAAACCGAG+AGG + chr2_3:61079651-61079670 None:intergenic 40.0%
!! CTCGGTTTGGCTATAATTGT+TGG - chr2_3:61079651-61079670 Msa0303860:five_prime_UTR 40.0%
AAGAATGATGAAGAGCAGCG+AGG + chr2_3:61075799-61075818 None:intergenic 45.0%
GTTCAAAACAAGGTGAACCG+GGG + chr2_3:61075838-61075857 None:intergenic 45.0%
GGTTCAAAACAAGGTGAACC+GGG + chr2_3:61075839-61075858 None:intergenic 45.0%
CGGTTCAAAACAAGGTGAAC+CGG + chr2_3:61075840-61075859 None:intergenic 45.0%
AAATAACCATCCGGGTCATG+CGG + chr2_3:61075863-61075882 None:intergenic 45.0%
! AAGCAGAAGAAGCATGAACC+GGG + chr2_3:61075895-61075914 None:intergenic 45.0%
!!! TTTTTTTCTTTCGCTGCGGC+GGG + chr2_3:61075924-61075943 None:intergenic 45.0%
!!! CTTTTTTTCTTTCGCTGCGG+CGG + chr2_3:61075925-61075944 None:intergenic 45.0%
GTTCCGTATGGTACAATCCA+TGG - chr2_3:61076404-61076423 Msa0303860:intron 45.0%
GGTACGAATTAGGTCCAGTT+TGG - chr2_3:61076511-61076530 Msa0303860:intron 45.0%
AAAATACTAGGGTCCTTCCC+CGG + chr2_3:61076672-61076691 None:intergenic 45.0%
GGCCGAACTCCAAAATACTA+GGG + chr2_3:61076683-61076702 None:intergenic 45.0%
AGGCCGAACTCCAAAATACT+AGG + chr2_3:61076684-61076703 None:intergenic 45.0%
!!! TATTTTGGAGTTCGGCCTTG+AGG - chr2_3:61076686-61076705 Msa0303860:intron 45.0%
GCCTTGAGGTAAGTATAGCT+TGG - chr2_3:61076700-61076719 Msa0303860:intron 45.0%
GCCAAGCTATACTTACCTCA+AGG + chr2_3:61076704-61076723 None:intergenic 45.0%
! CAAAACCAGAGTTCGATTCG+TGG + chr2_3:61076742-61076761 None:intergenic 45.0%
TTCTTCCACAAACAACACGG+GGG - chr2_3:61077212-61077231 Msa0303860:intron 45.0%
TCTCCTCGAAGACATGGTAA+AGG + chr2_3:61077986-61078005 None:intergenic 45.0%
! GAGGAGATTAGTTGCTGCAT+CGG - chr2_3:61077999-61078018 Msa0303860:intron 45.0%
! TTTAGGTGTTCCATGGACTG+AGG - chr2_3:61078122-61078141 Msa0303860:intron 45.0%
CTATGTTCTTCCTCAGTCCA+TGG + chr2_3:61078135-61078154 None:intergenic 45.0%
!! TTGGTTGGTCTCCAAAAGCT+AGG - chr2_3:61078162-61078181 Msa0303860:intron 45.0%
!! AGTCTCCTTTGCCTAGCTTT+TGG + chr2_3:61078176-61078195 None:intergenic 45.0%
AAAAGCTAGGCAAAGGAGAC+TGG - chr2_3:61078175-61078194 Msa0303860:intron 45.0%
!! GCATGACTTGCTACTTGAGT+AGG + chr2_3:61078237-61078256 None:intergenic 45.0%
TCCTGGTAGCATTACTCTGT+CGG + chr2_3:61078275-61078294 None:intergenic 45.0%
! ACGTTCCAGTCTTTTCGACA+TGG - chr2_3:61078302-61078321 Msa0303860:intron 45.0%
GATTCAAGCCAAACACACCA+AGG + chr2_3:61078537-61078556 None:intergenic 45.0%
AACGAGGATGAACCCGTTTA+TGG + chr2_3:61078751-61078770 None:intergenic 45.0%
! TCTGGCATCGAAGTTGAATC+TGG + chr2_3:61078880-61078899 None:intergenic 45.0%
CAAGGTTGTGAGTTCTCAGA+AGG + chr2_3:61078922-61078941 None:intergenic 45.0%
AGAGGCCAATGAGACTACAA+TGG - chr2_3:61079026-61079045 Msa0303860:intron 45.0%
GAGGCCAATGAGACTACAAT+GGG - chr2_3:61079027-61079046 Msa0303860:intron 45.0%
! AGCTCCAATTGATGGCCATA+TGG + chr2_3:61079115-61079134 None:intergenic 45.0%
TCAAAGGGAGCTCCAATTGA+TGG + chr2_3:61079123-61079142 None:intergenic 45.0%
AGGAGAGACATCGTATCATC+AGG - chr2_3:61079155-61079174 Msa0303860:intron 45.0%
!! GAATGACTGGTATTGGCTTG+AGG + chr2_3:61079182-61079201 None:intergenic 45.0%
GCCAATACCAGTCATTCCAA+AGG - chr2_3:61079185-61079204 Msa0303860:intron 45.0%
!! ACAGGTTCCTTTGGAATGAC+TGG + chr2_3:61079195-61079214 None:intergenic 45.0%
GGAATGTCTCATCTGAGCAT+TGG - chr2_3:61079234-61079253 Msa0303860:intron 45.0%
CCCCTTTCCTTGAAGTTGTT+AGG - chr2_3:61079288-61079307 Msa0303860:CDS 45.0%
! TGGAATGCTGATTGCCTTGA+GGG + chr2_3:61079318-61079337 None:intergenic 45.0%
! ATGGAATGCTGATTGCCTTG+AGG + chr2_3:61079319-61079338 None:intergenic 45.0%
CATGCAAATGCTCCAGTTAG+CGG - chr2_3:61079336-61079355 Msa0303860:CDS 45.0%
! AGCGGTTCTGATCTAAACAG+TGG - chr2_3:61079354-61079373 Msa0303860:CDS 45.0%
AACGCCATTCAAGCAGTTTG+AGG - chr2_3:61079384-61079403 Msa0303860:CDS 45.0%
!! CACATGGTGTTATGTAGCTC+AGG - chr2_3:61079536-61079555 Msa0303860:CDS 45.0%
GAAAGCAATCACGACGACGA+CGG + chr2_3:61075584-61075603 None:intergenic 50.0%
TGCTCTCACTGCAGCAACAA+CGG - chr2_3:61075653-61075672 Msa0303860:three_prime_UTR 50.0%
GCAACAACGGCCATAACTCA+CGG - chr2_3:61075666-61075685 Msa0303860:three_prime_UTR 50.0%
ACGGACATGTCCGTGAGTTA+TGG + chr2_3:61075679-61075698 None:intergenic 50.0%
! GAGGTTTAGGTTCCCCATAC+TGG + chr2_3:61075780-61075799 None:intergenic 50.0%
GATGAAGAGCAGCGAGGTTT+AGG + chr2_3:61075793-61075812 None:intergenic 50.0%
TCATGCGGCGGTTCAAAACA+AGG + chr2_3:61075848-61075867 None:intergenic 50.0%
CGCCGCAGCGAAAGAAAAAA+AGG - chr2_3:61075923-61075942 Msa0303860:CDS 50.0%
AAATACTAGGGTCCTTCCCC+GGG + chr2_3:61076671-61076690 None:intergenic 50.0%
! GGGGAAGGACCCTAGTATTT+TGG - chr2_3:61076671-61076690 Msa0303860:intron 50.0%
TCAACCCACGAATCGAACTC+TGG - chr2_3:61076734-61076753 Msa0303860:intron 50.0%
ACAGGGGTAACTGTTGTGTC+TGG - chr2_3:61077621-61077640 Msa0303860:intron 50.0%
GTAGCAAAGTAGCAGCCTTC+TGG + chr2_3:61077926-61077945 None:intergenic 50.0%
GGTCTCCAAAAGCTAGGCAA+AGG - chr2_3:61078168-61078187 Msa0303860:intron 50.0%
TCCGACAGAGTAATGCTACC+AGG - chr2_3:61078271-61078290 Msa0303860:intron 50.0%
GACAGAGTAATGCTACCAGG+AGG - chr2_3:61078274-61078293 Msa0303860:intron 50.0%
AGGAGCCATGTCGAAAAGAC+TGG + chr2_3:61078310-61078329 None:intergenic 50.0%
TTTCGACATGGCTCCTGATG+TGG - chr2_3:61078314-61078333 Msa0303860:intron 50.0%
GGGTTCATCCTCGTTGTAAC+TGG - chr2_3:61078756-61078775 Msa0303860:intron 50.0%
GGTTGTGAGTTCTCAGAAGG+TGG + chr2_3:61078919-61078938 None:intergenic 50.0%
GGATTCACACCAATGACGCA+AGG - chr2_3:61079057-61079076 Msa0303860:intron 50.0%
GGGAAGAATCCTTGCGTCAT+TGG + chr2_3:61079069-61079088 None:intergenic 50.0%
GGCCATATGGAAAATGAGGC+AGG + chr2_3:61079102-61079121 None:intergenic 50.0%
!! TCTGAGCATTGGGGAAACAC+AGG - chr2_3:61079245-61079264 Msa0303860:intron 50.0%
AACTTCAAGGAAAGGGGGGA+AGG + chr2_3:61079285-61079304 None:intergenic 50.0%
GGGCTCTCCTAACAACTTCA+AGG + chr2_3:61079298-61079317 None:intergenic 50.0%
AGTTGTTAGGAGAGCCCTCA+AGG - chr2_3:61079301-61079320 Msa0303860:CDS 50.0%
! CGCTAACTGGAGCATTTGCA+TGG + chr2_3:61079338-61079357 None:intergenic 50.0%
CAAGAGGTCCATGTTCCTCT+CGG - chr2_3:61079633-61079652 Msa0303860:five_prime_UTR 50.0%
TAGCCAAACCGAGAGGAACA+TGG + chr2_3:61079644-61079663 None:intergenic 50.0%
TGCAACCGAGTCATCATCCG+CGG - chr2_3:61075606-61075625 Msa0303860:three_prime_UTR 55.0%
ACCAAAAAGCTTCACCCCGC+CGG + chr2_3:61075720-61075739 None:intergenic 55.0%
! TTTTGAACCGCCGCATGACC+CGG - chr2_3:61075850-61075869 Msa0303860:CDS 55.0%
AATACTAGGGTCCTTCCCCG+GGG + chr2_3:61076670-61076689 None:intergenic 55.0%
! CACAAACAACACGGGGGTGT+CGG - chr2_3:61077218-61077237 Msa0303860:intron 55.0%
TAGGCAAAGGAGACTGGCGA+GGG - chr2_3:61078181-61078200 Msa0303860:intron 55.0%
ACTGGAACGTCTCTTCCTCC+TGG + chr2_3:61078292-61078311 None:intergenic 55.0%
CGAGAGGAACATGGACCTCT+TGG + chr2_3:61079635-61079654 None:intergenic 55.0%
GGTCCATGTTCCTCTCGGTT+TGG - chr2_3:61079638-61079657 Msa0303860:five_prime_UTR 55.0%
AGCAATCACGACGACGACGG+AGG + chr2_3:61075581-61075600 None:intergenic 60.0%
AACCGAGTCATCATCCGCGG+CGG - chr2_3:61075609-61075628 Msa0303860:three_prime_UTR 60.0%
GGCGGCGATTCGTGATGACT+CGG - chr2_3:61075627-61075646 Msa0303860:three_prime_UTR 60.0%
TCTTCTTCGCCGCTGAACCC+CGG - chr2_3:61075818-61075837 Msa0303860:exon 60.0%
CAAGGTGAACCGGGGTTCAG+CGG + chr2_3:61075830-61075849 None:intergenic 60.0%
TAACCATCCGGGTCATGCGG+CGG + chr2_3:61075860-61075879 None:intergenic 60.0%
!! CGACACCCCCGTGTTGTTTG+TGG + chr2_3:61077220-61077239 None:intergenic 60.0%
!! AAACAACACGGGGGTGTCGG+TGG - chr2_3:61077221-61077240 Msa0303860:intron 60.0%
!! ACGGGGGTGTCGGTGGAAAA+CGG - chr2_3:61077228-61077247 Msa0303860:intron 60.0%
CTAGGCAAAGGAGACTGGCG+AGG - chr2_3:61078180-61078199 Msa0303860:intron 60.0%
GTCATCACGAATCGCCGCCG+CGG + chr2_3:61075626-61075645 None:intergenic 65.0%
! GCCGGCGGGGTGAAGCTTTT+TGG - chr2_3:61075716-61075735 Msa0303860:three_prime_UTR 65.0%
CCGGGGAACCGAGGGGTTAA+CGG + chr2_3:61076653-61076672 None:intergenic 65.0%
CCGTTAACCCCTCGGTTCCC+CGG - chr2_3:61076650-61076669 Msa0303860:intron 65.0%
CGTTAACCCCTCGGTTCCCC+GGG - chr2_3:61076651-61076670 Msa0303860:intron 65.0%
GTTAACCCCTCGGTTCCCCG+GGG - chr2_3:61076652-61076671 Msa0303860:intron 65.0%
CGCCGCCGCGGATGATGACT+CGG + chr2_3:61075614-61075633 None:intergenic 70.0%
AAGCTTCACCCCGCCGGCAG+CGG + chr2_3:61075714-61075733 None:intergenic 70.0%
GAACCGCCGCATGACCCGGA+TGG - chr2_3:61075854-61075873 Msa0303860:CDS 70.0%
TCCTTCCCCGGGGAACCGAG+GGG + chr2_3:61076660-61076679 None:intergenic 70.0%
GTCCTTCCCCGGGGAACCGA+GGG + chr2_3:61076661-61076680 None:intergenic 70.0%
GCAGCGGCGGCGCTTCTCGA+CGG + chr2_3:61075698-61075717 None:intergenic 75.0%
!! TCGAGAAGCGCCGCCGCTGC+CGG - chr2_3:61075698-61075717 Msa0303860:three_prime_UTR 75.0%
ACCCCTCGGTTCCCCGGGGA+AGG - chr2_3:61076656-61076675 Msa0303860:intron 75.0%
GGTCCTTCCCCGGGGAACCG+AGG + chr2_3:61076662-61076681 None:intergenic 75.0%
!!! AGAAGCGCCGCCGCTGCCGG+CGG - chr2_3:61075701-61075720 Msa0303860:three_prime_UTR 80.0%
! CTTCACCCCGCCGGCAGCGG+CGG + chr2_3:61075711-61075730 None:intergenic 80.0%
!!! GAAGCGCCGCCGCTGCCGGC+GGG - chr2_3:61075702-61075721 Msa0303860:three_prime_UTR 85.0%
!! AAGCGCCGCCGCTGCCGGCG+GGG - chr2_3:61075703-61075722 Msa0303860:three_prime_UTR 85.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 61075552 61079674 61075552 ID=Msa0303860;Name=Msa0303860
chr2_3 mRNA 61075552 61079674 61075552 ID=Msa0303860-mRNA-1;Parent=Msa0303860;Name=Msa0303860-mRNA-1;_AED=0.04;_eAED=0.04;_QI=89|1|1|1|1|1|3|270|347
chr2_3 exon 61075552 61076352 61075552 ID=Msa0303860-mRNA-1:exon:20074;Parent=Msa0303860-mRNA-1
chr2_3 exon 61076891 61077099 61076891 ID=Msa0303860-mRNA-1:exon:20073;Parent=Msa0303860-mRNA-1
chr2_3 exon 61079282 61079674 61079282 ID=Msa0303860-mRNA-1:exon:20072;Parent=Msa0303860-mRNA-1
chr2_3 five_prime_UTR 61079586 61079674 61079586 ID=Msa0303860-mRNA-1:five_prime_utr;Parent=Msa0303860-mRNA-1
chr2_3 CDS 61079282 61079585 61079282 ID=Msa0303860-mRNA-1:cds;Parent=Msa0303860-mRNA-1
chr2_3 CDS 61076891 61077099 61076891 ID=Msa0303860-mRNA-1:cds;Parent=Msa0303860-mRNA-1
chr2_3 CDS 61075822 61076352 61075822 ID=Msa0303860-mRNA-1:cds;Parent=Msa0303860-mRNA-1
chr2_3 three_prime_UTR 61075552 61075821 61075552 ID=Msa0303860-mRNA-1:three_prime_utr;Parent=Msa0303860-mRNA-1
Gene Sequence

>Msa0303860

ATGACTCGGCGTTGCTCTCACTGCAGCAACAACGGCCATAACTCACGGACATGTCCGTCGAGAAGCGCCGCCGCTGCCGGCGGGGTGAAGCTTTTTGGTGTTAGATTAACCGATGGATCAATCATCAAGAAAAGTGCCAGTATGGGGAACCTAAACCTCGCTGCTCTTCATCATTCTTCTTCTTCGCCGCTGAACCCCGGTTCACCTTGTTTTGAACCGCCGCATGACCCGGATGGTTATTTATCTGATGACCCGGTTCATGCTTCTTCTGCTTTCGCTACCCGCCGCAGCGAAAGAAAAAAAGGTGTTCCATGGACTGAGGAAGAACATAGATTGTTCTTGGTTGGTCTCCAAAAGCTAGGCAAAGGAGACTGGCGAGGGATAGCACGTAATTTTGTTGTGTCAAGGACCCCTACTCAAGTAGCAAGTCATGCACAAAAGTACTTTATCCGACAGAGTAATGCTACCAGGAGGAAGAGACGTTCCAGTCTTTTCGACATGGCTCCTGATGTGTGTCCAGATTCAACTTCGATGCCAGAAGAGCAAATACTACTTCCACCTTCTGAGAACTCACAACCTTGTAATGGAAAATCACAACCATCACTAAATCTGTCTCTCAAGTCAGAATATGAACCAATGGAAGCTACATCTGAAGAAAATGTAGAAGAGGCCAATGAGACTACAATGGGATCAAATGGATTCACACCAATGACGCAAGGATTCTTCCCACCTTATTTACCTGCCTCATTTTCCATATGGCCATCAATTGGAGCTCCCTTTGAAGAAGTCAACAAAGGAGAGACATCGTATCATCAGGTCCTCAAGCCAATACCAGTCATTCCAAAGGAACCTGTCAATGTTGATGAACTTGTGGGAATGTCTCATCTGAGCATTGGGGAAACACAGGCTCTTGATAGAGAGCCTTCCCCCCTTTCCTTGAAGTTGTTAGGAGAGCCCTCAAGGCAATCAGCATTCCATGCAAATGCTCCAGTTAGCGGTTCTGATCTAAACAGTGGCAAGAACAACGCCATTCAAGCAGTTTGA
Protein sequence

>Msa0303860

MTRRCSHCSNNGHNSRTCPSRSAAAAGGVKLFGVRLTDGSIIKKSASMGNLNLAALHHSSSSPLNPGSPCFEPPHDPDGYLSDDPVHASSAFATRRSERKKGVPWTEEEHRLFLVGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMAPDVCPDSTSMPEEQILLPPSENSQPCNGKSQPSLNLSLKSEYEPMEATSEENVEEANETTMGSNGFTPMTQGFFPPYLPASFSIWPSIGAPFEEVNKGETSYHQVLKPIPVIPKEPVNVDELVGMSHLSIGETQALDREPSPLSLKLLGEPSRQSAFHANAPVSGSDLNSGKNNAIQAV*