AlfalfaGEDB | Msa0921630

M. sativa cultivar zhongmu-4 / Msa0921630

KEGG: K05929
GO: GO:0000003 GO:0000902 GO:0000904 GO:0001505 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006807 GO:0006935 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0009058 GO:0009308 GO:0009309 GO:0009555 GO:0009605 GO:0009653 GO:0009791 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010183 GO:0016043 GO:0016049 GO:0016740 GO:0016741 GO:0019695 GO:0022414 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0032989 GO:0034641 GO:0040007 GO:0040011 GO:0042133 GO:0042136 GO:0042221 GO:0042330 GO:0042401 GO:0042425 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048229 GO:0048364 GO:0048468 GO:0048528 GO:0048588 GO:0048589 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0050918 GO:0051704 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090696 GO:0097164 GO:0099402 GO:1901564 GO:1901566 GO:1901576
PFAM: PF08241.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0921630	XP_003619836.1	96.177	497	9	1	1	487	1	497	0.0	992

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0921630	sp\|Q9M571\|PEAMT_SPIOL	71.400	493	131	1	4	486	1	493	0.0	741

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007230	Msa0921630	0.810086	1.373158e-50	-8.615850e-47
Msa0029020	Msa0921630	-0.815503	8.943889e-52	-8.615850e-47
Msa0036150	Msa0921630	0.806269	8.927728e-50	-8.615850e-47
Msa0038350	Msa0921630	-0.816016	6.872500e-52	-8.615850e-47
Msa0046310	Msa0921630	0.805526	1.279080e-49	-8.615850e-47
Msa0046820	Msa0921630	0.822138	2.780230e-53	-8.615850e-47
Msa0055590	Msa0921630	0.809251	2.075735e-50	-8.615850e-47
Msa0090040	Msa0921630	-0.834394	3.075199e-56	-8.615850e-47
Msa0090280	Msa0921630	-0.814951	1.186252e-51	-8.615850e-47
Msa0094100	Msa0921630	0.808931	2.429535e-50	-8.615850e-47

Showing 1 to 10 of 265 entries

Previous1 2 3 4 5…27Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0921630	MtrunA17_Chr6g0478481	96.177	497	9	1	1	487	1	497	0.0	992
Msa0921630	MtrunA17_Chr8g0393121	78.226	496	95	3	1	486	1	493	0.0	779
Msa0921630	MtrunA17_Chr1g0150551	33.019	106	69	1	280	383	130	235	9.61e-13	69.3
Msa0921630	MtrunA17_Chr3g0089671	31.034	116	78	1	270	383	86	201	9.59e-12	66.2

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0921630	AT3G18000.1	69.796	490	138	1	7	486	1	490	0.0	726
Msa0921630	AT1G73600.1	69.628	484	137	1	13	486	6	489	0.0	725
Msa0921630	AT1G73600.2	69.628	484	137	1	13	486	20	503	0.0	725
Msa0921630	AT1G48600.2	70.165	486	135	1	12	487	6	491	0.0	722
Msa0921630	AT1G48600.1	70.675	474	129	1	24	487	2	475	0.0	705
Msa0921630	AT5G13710.1	29.697	165	103	4	249	401	55	218	4.38e-13	70.9
Msa0921630	AT5G13710.2	29.697	165	103	4	249	401	55	218	4.38e-13	70.9
Msa0921630	AT1G64970.1	29.808	104	71	1	282	383	130	233	2.95e-11	65.5

Showing 1 to 8 of 8 entries

Previous1Next

Find 110 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCATAATAATAGTAAT+AGG	0.356221	6_2:-59185999	None:intergenic
AAAGTACTAGATGTTGGTTG+TGG	0.613287	6_2:+59184186	Msa0921630:CDS
AAATAAGAAGAATCAAAATC+AGG	0.476569	6_2:+59183533	Msa0921630:CDS
AAATGCCCTTGAGAACAAGA+AGG	0.581850	6_2:+59185300	Msa0921630:CDS
AAATTTGCTTATAATTCAGA+CGG	0.557709	6_2:+59179722	Msa0921630:five_prime_UTR
AAGATGATAGAGGGTTTCAA+AGG	0.577951	6_2:+59183698	Msa0921630:CDS
AAGCAAATGAGAGGTGTAGC+TGG	0.525626	6_2:+59185793	Msa0921630:CDS
AATACAATCCAACTCACTAT+AGG	0.347505	6_2:+59182983	Msa0921630:CDS
AATCAACCTTCTTGTTCTCA+AGG	0.512925	6_2:-59185306	None:intergenic
ACAAGAGGTAATCCTGTTCA+AGG	0.484120	6_2:+59179854	Msa0921630:five_prime_UTR

Showing 1 to 10 of 110 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TCCATTCTCTCATTCATATA+TGG	+	chr6_2:59180007-59180026	Msa0921630:exon	30.0%
AAATTAGTAGCACATACTTC+GGG	-	chr6_2:59180363-59180382	None:intergenic	30.0%
GAAATTAGTAGCACATACTT+CGG	-	chr6_2:59180364-59180383	None:intergenic	30.0%
TACACCATGCCAATTATATT+TGG	+	chr6_2:59180649-59180668	Msa0921630:intron	30.0%
CATGCCAATTATATTTGGAT+GGG	+	chr6_2:59180654-59180673	Msa0921630:intron	30.0%
CCGATAAAACAGGATAAAAT+TGG	-	chr6_2:59180843-59180862	None:intergenic	30.0%
AAATATAAAGGGTCGTATTG+TGG	+	chr6_2:59181048-59181067	Msa0921630:intron	30.0%
GTCGTATTGTGGTTTATTAA+AGG	+	chr6_2:59181059-59181078	Msa0921630:intron	30.0%
TATATTCTAAGTGGAGAACA+AGG	+	chr6_2:59181748-59181767	Msa0921630:intron	30.0%
TCTCTATTACCATCATATGA+AGG	+	chr6_2:59181887-59181906	Msa0921630:CDS	30.0%

Showing 1 to 10 of 321 entries

Previous1 2 3 4 5…33Next

Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	59179585	59186143	59179585	ID=Msa0921630;Name=Msa0921630
chr6_2	mRNA	59179585	59186143	59179585	ID=Msa0921630-mRNA-1;Parent=Msa0921630;Name=Msa0921630-mRNA-1;_AED=0.05;_eAED=0.05;_QI=441\|0.90\|0.91\|1\|1\|1\|12\|288\|487
chr6_2	exon	59179585	59180053	59179585	ID=Msa0921630-mRNA-1:exon:8900;Parent=Msa0921630-mRNA-1
chr6_2	exon	59180244	59180365	59180244	ID=Msa0921630-mRNA-1:exon:8901;Parent=Msa0921630-mRNA-1
chr6_2	exon	59181881	59181988	59181881	ID=Msa0921630-mRNA-1:exon:8902;Parent=Msa0921630-mRNA-1
chr6_2	exon	59182492	59182629	59182492	ID=Msa0921630-mRNA-1:exon:8903;Parent=Msa0921630-mRNA-1
chr6_2	exon	59182883	59183026	59182883	ID=Msa0921630-mRNA-1:exon:8904;Parent=Msa0921630-mRNA-1
chr6_2	exon	59183444	59183554	59183444	ID=Msa0921630-mRNA-1:exon:8905;Parent=Msa0921630-mRNA-1
chr6_2	exon	59183667	59183808	59183667	ID=Msa0921630-mRNA-1:exon:8906;Parent=Msa0921630-mRNA-1
chr6_2	exon	59184139	59184419	59184139	ID=Msa0921630-mRNA-1:exon:8907;Parent=Msa0921630-mRNA-1
chr6_2	exon	59184517	59184678	59184517	ID=Msa0921630-mRNA-1:exon:8908;Parent=Msa0921630-mRNA-1
chr6_2	exon	59185134	59185187	59185134	ID=Msa0921630-mRNA-1:exon:8909;Parent=Msa0921630-mRNA-1
chr6_2	exon	59185274	59185348	59185274	ID=Msa0921630-mRNA-1:exon:8910;Parent=Msa0921630-mRNA-1
chr6_2	exon	59185757	59186143	59185757	ID=Msa0921630-mRNA-1:exon:8911;Parent=Msa0921630-mRNA-1
chr6_2	five_prime_UTR	59179585	59180025	59179585	ID=Msa0921630-mRNA-1:five_prime_utr;Parent=Msa0921630-mRNA-1
chr6_2	CDS	59180026	59180053	59180026	ID=Msa0921630-mRNA-1:cds;Parent=Msa0921630-mRNA-1
chr6_2	CDS	59180244	59180365	59180244	ID=Msa0921630-mRNA-1:cds;Parent=Msa0921630-mRNA-1
chr6_2	CDS	59181881	59181988	59181881	ID=Msa0921630-mRNA-1:cds;Parent=Msa0921630-mRNA-1
chr6_2	CDS	59182492	59182629	59182492	ID=Msa0921630-mRNA-1:cds;Parent=Msa0921630-mRNA-1
chr6_2	CDS	59182883	59183026	59182883	ID=Msa0921630-mRNA-1:cds;Parent=Msa0921630-mRNA-1
chr6_2	CDS	59183444	59183554	59183444	ID=Msa0921630-mRNA-1:cds;Parent=Msa0921630-mRNA-1
chr6_2	CDS	59183667	59183808	59183667	ID=Msa0921630-mRNA-1:cds;Parent=Msa0921630-mRNA-1
chr6_2	CDS	59184139	59184419	59184139	ID=Msa0921630-mRNA-1:cds;Parent=Msa0921630-mRNA-1
chr6_2	CDS	59184517	59184678	59184517	ID=Msa0921630-mRNA-1:cds;Parent=Msa0921630-mRNA-1
chr6_2	CDS	59185134	59185187	59185134	ID=Msa0921630-mRNA-1:cds;Parent=Msa0921630-mRNA-1
chr6_2	CDS	59185274	59185348	59185274	ID=Msa0921630-mRNA-1:cds;Parent=Msa0921630-mRNA-1
chr6_2	CDS	59185757	59185855	59185757	ID=Msa0921630-mRNA-1:cds;Parent=Msa0921630-mRNA-1
chr6_2	three_prime_UTR	59185856	59186143	59185856	ID=Msa0921630-mRNA-1:three_prime_utr;Parent=Msa0921630-mRNA-1

Gene Sequence

>Msa0921630

ATGGCTAGTTTGGAAGCAATGAAACAAGGTGGTGAAGATGAACGTGAAGTGCAGAGAAGTTACTGGAAAGAGCATTGTGCAAATTTGTCAGTTGAGTCAATGATGCTCGATTCCAACGCCTCCCATCTCGACAAAGAAGAGAGACCCGAAGTACTTTCTCTATTACCATCATATGAAGGAAAATCAGTTTTAGAGCTTGGAGCAGGTATTGGAAGATTTACAGCTGAATTGGCTCAGAAAGCTGGCCAATTGCTTGCTAATGAAAATACTAATGGACACCATAAGAATGTCAAGTTCATGTGTGCTGATGTCACATCTCCAAACTTGCATATTTCTGAAGGATCGGTTGATTTGATATTCTCAAATTGGTTACTCATGTATCTTTCAGATGAAGAGGTTAAAAATTTAGCTGAAAGGATGGTCAAATGGTTAAATGTTGATGGATGTATATTCTTTAGAGAATCTTGTTTCCACCAATCTGGAGATTCAAAGAGAAAATACAATCCAACTCACTATAGGGAACCAAGATTTTACACTAAGGTATTTAAAGAATGTCATATGAGTGATGATAATGGGAACTCCTTTGAGCTTTCTCTTGTGGGATGCAAATGCATTGGAGCTTATGTTAGAAATAAGAAGAATCAAAATCAGATTTGTTGGATATGGCAAAAAGTTAAATCACAAGATGATAGAGGGTTTCAAAGGTTCTTAGATAGTGTTGAGTATAACCACAAAGATATCTTACTCTATGAACATGTTTATGGTCAAGGCTTTGTGAGCACAGGAGGACTTGAAACAACAAGGGAAATTGTGGCAAAGTTAGGACTAAAGCCAGGTCAAAAAGTACTAGATGTTGGTTGTGGTATTGGAGGTGGTGACTTTTACATGGCTGAAAATTTTGATGTTGAGGTTGTTGCTATTGACCTCTCCATAAACATGATTTCTCTAGCTATCGAACGCGCCATCGGACTCAAATATGCAGTAGAATTTGAATGCGTTGATTGCACGAAAAAAACGTATCCTGAGAAAACATTCGATGTAATCTACACTCGCGACACCTTGTTACACATCAAAGATAAACCAACATTGTTCAGATCATTTTACAAGTGGTTGAAGCCTGGAGGTACACTTTTAATTACTGACTATTGCAAAAGTGTTGGAAGTCTTTCAGTAGAATATGCAGAGTATATAAAAAAGAGAGGATATTATATCCATGACATGAAAGCATATTATCAGATGCTTGAGAATGCTGGATTTGATGATGTCATTGCTGTTGATCAAACCAATTTGTTCTTGAAAACTCTACAAATGGAGTTAAATGCCCTTGAGAACAAGAAGGTTGATTTCATTGATGATTTCTCTGAGGATGACTATAATGAAATTGTTGAAAGATGGAAGGCTAAGCAAATGAGAGGTGTAGCTGGTGAGCAGATATGGGGATTGTTCATTGCCAAGAAAAAATGA

Protein sequence

>Msa0921630

MASLEAMKQGGEDEREVQRSYWKEHCANLSVESMMLDSNASHLDKEERPEVLSLLPSYEGKSVLELGAGIGRFTAELAQKAGQLLANENTNGHHKNVKFMCADVTSPNLHISEGSVDLIFSNWLLMYLSDEEVKNLAERMVKWLNVDGCIFFRESCFHQSGDSKRKYNPTHYREPRFYTKVFKECHMSDDNGNSFELSLVGCKCIGAYVRNKKNQNQICWIWQKVKSQDDRGFQRFLDSVEYNHKDILLYEHVYGQGFVSTGGLETTREIVAKLGLKPGQKVLDVGCGIGGGDFYMAENFDVEVVAIDLSINMISLAIERAIGLKYAVEFECVDCTKKTYPEKTFDVIYTRDTLLHIKDKPTLFRSFYKWLKPGGTLLITDYCKSVGSLSVEYAEYIKKRGYYIHDMKAYYQMLENAGFDDVIAVDQTNLFLKTLQMELNALENKKVDFIDDFSEDDYNEIVERWKAKQMRGVAGEQIWGLFIAKKK*