AlfalfaGEDB | Msa0382200

M. sativa cultivar zhongmu-4 / Msa0382200

KEGG: -
GO: -
PFAM: PF12738.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382200	XP_039682575.1	97.778	90	2	0	1	90	1	90	1.01e-55	184

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382200	A0A072V254	97.778	90	2	0	1	90	1	90	2.52e-54	186

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0036150	Msa0382200	0.808191	3.496284e-50	-8.615850e-47
Msa0046820	Msa0382200	0.983839	7.510074e-159	-8.615850e-47
Msa0121430	Msa0382200	0.808997	2.352629e-50	-8.615850e-47
Msa0208390	Msa0382200	0.825929	3.585097e-54	-8.615850e-47
Msa0265930	Msa0382200	-0.800006	1.764671e-48	-8.615850e-47
Msa0269360	Msa0382200	0.808219	3.448691e-50	-8.615850e-47
Msa0303860	Msa0382200	-0.808979	2.372725e-50	-8.615850e-47
Msa0345010	Msa0382200	0.989427	4.495170e-178	-8.615850e-47
Msa0382200	Msa0431710	0.944549	1.590767e-103	-8.615850e-47
Msa0382200	Msa0436900	0.823108	1.654103e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382200	MtrunA17_Chr6g0473061	97.701	87	2	0	1	87	1	87	5.09e-56	181
Msa0382200	MtrunA17_Chr3g0136481	97.701	87	2	0	1	87	1	87	5.65e-56	180

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382200	AT2G26270.1	54.255	94	33	2	1	92	1	86	1.21e-24	96.7
Msa0382200	AT3G43930.3	52.000	100	38	2	1	90	1	100	3.24e-23	90.9
Msa0382200	AT3G43930.1	52.000	100	38	2	1	90	1	100	4.16e-23	92.0
Msa0382200	AT3G43930.2	52.000	100	38	2	1	90	1	100	4.61e-23	91.7

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Find 177 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTTCTCTTCATCACC+AGG	0.600801	3_1:+84688929	None:intergenic
AAAAGTCCATGACGATCTTC+AGG	0.319631	3_1:-84686330	Msa0382200:three_prime_UTR
AAAATTAAGAGAGGGTAAAA+GGG	0.424229	3_1:+84689113	None:intergenic
AAAATTCAAGATGATTTAGA+AGG	0.353960	3_1:+84688337	None:intergenic
AAAGTCCATGACGATCTTCA+GGG	0.549038	3_1:-84686329	Msa0382200:three_prime_UTR
AAATTAAGAGAGGGTAAAAG+GGG	0.585895	3_1:+84689114	None:intergenic
AAATTGGGAAAATTAAGAGA+GGG	0.670526	3_1:+84689105	None:intergenic
AACAAACCCAAATTGGAAAA+AGG	0.336046	3_1:+84689068	None:intergenic
AACCCAGTGTGACAACAAAG+AGG	0.624024	3_1:+84687742	None:intergenic
AAGATTTCATGATGGTACTA+CGG	0.556839	3_1:+84687831	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTAAGAGAGGGTAAAAG+GGG	+	chr3_1:84684900-84684919	None:intergenic	30.0%
GAAAATTAAGAGAGGGTAAA+AGG	+	chr3_1:84684902-84684921	None:intergenic	30.0%
CAAATTGGGAAAATTAAGAG+AGG	+	chr3_1:84684910-84684929	None:intergenic	30.0%
AACAAACCCAAATTGGAAAA+AGG	+	chr3_1:84684946-84684965	None:intergenic	30.0%
TCATGTCTTCTATGATTGAT+TGG	-	chr3_1:84685365-84685384	Msa0382200:intron	30.0%
CAATGACTTCAAGTAAGATA+AGG	+	chr3_1:84685406-84685425	None:intergenic	30.0%
CTTATCTTACTTGAAGTCAT+TGG	-	chr3_1:84685404-84685423	Msa0382200:intron	30.0%
TCATATACTTGAGCTTGAAA+AGG	-	chr3_1:84685459-84685478	Msa0382200:three_prime_UTR	30.0%
TCAAGATGATTTAGAAGGAA+AGG	+	chr3_1:84685672-84685691	None:intergenic	30.0%
ATATACTTACATGAACCCAT+TGG	-	chr3_1:84685749-84685768	Msa0382200:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	84684714	84689319	84684714	ID=Msa0382200;Name=Msa0382200
chr3_1	mRNA	84684714	84689319	84684714	ID=Msa0382200-mRNA-1;Parent=Msa0382200;Name=Msa0382200-mRNA-1;_AED=0.03;_eAED=0.03;_QI=445\|1\|1\|1\|0.87\|0.66\|9\|2398\|98
chr3_1	exon	84684714	84685304	84684714	ID=Msa0382200-mRNA-1:exon:22106;Parent=Msa0382200-mRNA-1
chr3_1	exon	84685433	84685586	84685433	ID=Msa0382200-mRNA-1:exon:22105;Parent=Msa0382200-mRNA-1
chr3_1	exon	84685671	84685888	84685671	ID=Msa0382200-mRNA-1:exon:22104;Parent=Msa0382200-mRNA-1
chr3_1	exon	84686238	84686366	84686238	ID=Msa0382200-mRNA-1:exon:22103;Parent=Msa0382200-mRNA-1
chr3_1	exon	84686531	84686641	84686531	ID=Msa0382200-mRNA-1:exon:22102;Parent=Msa0382200-mRNA-1
chr3_1	exon	84686886	84687017	84686886	ID=Msa0382200-mRNA-1:exon:22101;Parent=Msa0382200-mRNA-1
chr3_1	exon	84687279	84688460	84687279	ID=Msa0382200-mRNA-1:exon:22100;Parent=Msa0382200-mRNA-1
chr3_1	exon	84688677	84689139	84688677	ID=Msa0382200-mRNA-1:exon:22099;Parent=Msa0382200-mRNA-1
chr3_1	exon	84689160	84689319	84689160	ID=Msa0382200-mRNA-1:exon:22098;Parent=Msa0382200-mRNA-1
chr3_1	five_prime_UTR	84689160	84689319	84689160	ID=Msa0382200-mRNA-1:five_prime_utr;Parent=Msa0382200-mRNA-1
chr3_1	five_prime_UTR	84688855	84689139	84688855	ID=Msa0382200-mRNA-1:five_prime_utr;Parent=Msa0382200-mRNA-1
chr3_1	CDS	84688677	84688854	84688677	ID=Msa0382200-mRNA-1:cds;Parent=Msa0382200-mRNA-1
chr3_1	CDS	84688342	84688460	84688342	ID=Msa0382200-mRNA-1:cds;Parent=Msa0382200-mRNA-1
chr3_1	three_prime_UTR	84687279	84688341	84687279	ID=Msa0382200-mRNA-1:three_prime_utr;Parent=Msa0382200-mRNA-1
chr3_1	three_prime_UTR	84686886	84687017	84686886	ID=Msa0382200-mRNA-1:three_prime_utr;Parent=Msa0382200-mRNA-1
chr3_1	three_prime_UTR	84686531	84686641	84686531	ID=Msa0382200-mRNA-1:three_prime_utr;Parent=Msa0382200-mRNA-1
chr3_1	three_prime_UTR	84686238	84686366	84686238	ID=Msa0382200-mRNA-1:three_prime_utr;Parent=Msa0382200-mRNA-1
chr3_1	three_prime_UTR	84685671	84685888	84685671	ID=Msa0382200-mRNA-1:three_prime_utr;Parent=Msa0382200-mRNA-1
chr3_1	three_prime_UTR	84685433	84685586	84685433	ID=Msa0382200-mRNA-1:three_prime_utr;Parent=Msa0382200-mRNA-1
chr3_1	three_prime_UTR	84684714	84685304	84684714	ID=Msa0382200-mRNA-1:three_prime_utr;Parent=Msa0382200-mRNA-1

Gene Sequence	>Msa0382200 ATGGGTGGTGAGGGTAGAGTTGAAGTTGCGAGTGGCAAAGGGTGTTCGAGGCTGTTTTCGTCTTCAATCAGAACTCTTCAACCATTGGACCAAATGTCTCCTGTTTCATCCTCTCCGCAATTGCCATCAAATGCTCCTTTTGCTGGTCTTGTTATATGTGTTACCGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGCCAGTATAGCCCCAATCTGCATCCTCAATGTACTCATTTGGTGGTTCAGATATCCTTTCCTTCTAAATCATCTTGA
Protein sequence	>Msa0382200 MGGEGRVEVASGKGCSRLFSSSIRTLQPLDQMSPVSSSPQLPSNAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVVQISFPSKSS*