AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0382200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382200 MtrunA17_Chr6g0473061 97.701 87 2 0 1 87 1 87 5.09e-56 181
Msa0382200 MtrunA17_Chr3g0136481 97.701 87 2 0 1 87 1 87 5.65e-56 180
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382200 AT2G26270.1 54.255 94 33 2 1 92 1 86 1.21e-24 96.7
Msa0382200 AT3G43930.3 52.000 100 38 2 1 90 1 100 3.24e-23 90.9
Msa0382200 AT3G43930.1 52.000 100 38 2 1 90 1 100 4.16e-23 92.0
Msa0382200 AT3G43930.2 52.000 100 38 2 1 90 1 100 4.61e-23 91.7

Find 177 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTATAGTTTGAAGAATTA+TGG 0.150732 3_1:-84687496 Msa0382200:three_prime_UTR
TACGGTTATCTATAGTATTT+TGG 0.194222 3_1:-84684714 Msa0382200:three_prime_UTR
TGTATTCACAGTCCCCATTT+TGG 0.213595 3_1:+84684946 None:intergenic
GAAAATTAAGAGAGGGTAAA+AGG 0.221597 3_1:+84689112 None:intergenic
GATGAGTATGCTTGATTTCA+TGG 0.230447 3_1:+84687395 None:intergenic
CTGATGCTTGATGACATTTC+AGG 0.260903 3_1:-84686535 Msa0382200:three_prime_UTR
CAGGGCAGTAAAAGTGAAAT+TGG 0.280733 3_1:-84686311 Msa0382200:three_prime_UTR
GATAGAGTCCAGAAGGTTAT+TGG 0.281598 3_1:+84685835 None:intergenic
TGCCAAACTAGCACCTTCTT+TGG 0.298759 3_1:+84686979 None:intergenic
CTTGAGTAGGGTGCCCAAAA+TGG 0.298928 3_1:-84684960 Msa0382200:three_prime_UTR
GAGAACAACCTTTCTGTTAG+AGG 0.306209 3_1:+84685662 None:intergenic
TATGCAGAACAAACCCAAAT+TGG 0.309654 3_1:+84689061 None:intergenic
TTACGAACCACTTGAACTTT+TGG 0.310539 3_1:-84684748 Msa0382200:three_prime_UTR
ATAAAGTAGAAATACTGATA+TGG 0.312655 3_1:+84688167 None:intergenic
AAAAGTCCATGACGATCTTC+AGG 0.319631 3_1:-84686330 Msa0382200:three_prime_UTR
TTGTGTGAGAGAAGTAATTT+TGG 0.327368 3_1:-84688192 Msa0382200:three_prime_UTR
ACTGAAAGAGTCTGTGTAAA+TGG 0.327959 3_1:+84685778 None:intergenic
TGTTAGCATGTCTGTTGATT+TGG 0.329381 3_1:-84686572 Msa0382200:three_prime_UTR
AACAAACCCAAATTGGAAAA+AGG 0.336046 3_1:+84689068 None:intergenic
CAATTCACAATTGACAAAAC+TGG 0.339488 3_1:-84687973 Msa0382200:three_prime_UTR
TTTATAGTTTGAAGAATTAT+GGG 0.341154 3_1:-84687495 Msa0382200:three_prime_UTR
GGAAGAGTATGGTGAGAAAA+TGG 0.345135 3_1:+84685537 None:intergenic
TTTAACATATAGCACAGTTT+TGG 0.346095 3_1:-84687810 Msa0382200:three_prime_UTR
CTCTATCTGTTGGTCAATAT+CGG 0.352911 3_1:-84685819 Msa0382200:three_prime_UTR
AAAATTCAAGATGATTTAGA+AGG 0.353960 3_1:+84688337 None:intergenic
TTGATTTCATGGATTCTTGC+AGG 0.362130 3_1:+84687406 None:intergenic
TCAGTATTTCTACTTTATCT+TGG 0.362694 3_1:-84688162 Msa0382200:three_prime_UTR
GATGCAGATTGGGGCTATAC+TGG 0.365924 3_1:+84688395 None:intergenic
GGTCTTGTTATATGTGTTAC+CGG 0.369177 3_1:-84688688 Msa0382200:CDS
ATCCAAAGAAGGTGCTAGTT+TGG 0.369729 3_1:-84686981 Msa0382200:three_prime_UTR
TTTAGTGGTGGTAACAGTTA+TGG 0.374078 3_1:-84688851 Msa0382200:exon
GATTACACCCAATAACCTTC+TGG 0.380114 3_1:-84685843 Msa0382200:three_prime_UTR
TTGAGTAGGGTGCCCAAAAT+GGG 0.388027 3_1:-84684959 Msa0382200:three_prime_UTR
TGCTGATGCTATTATTATAT+AGG 0.395336 3_1:+84688314 None:intergenic
TGCAGAGTCTAACAGAAGTT+TGG 0.395732 3_1:-84687344 Msa0382200:three_prime_UTR
GTACATTGAGGATGCAGATT+GGG 0.398670 3_1:+84688385 None:intergenic
TGCAATTCGGATGAAATGCC+TGG 0.401863 3_1:+84687286 None:intergenic
TTTGGCAGAAGCAAGGAATC+AGG 0.406989 3_1:-84688446 Msa0382200:intron
TTAGTGGTGGTAACAGTTAT+GGG 0.408245 3_1:-84688850 Msa0382200:exon
TCGATCAGTTTACTCAAGTA+AGG 0.418161 3_1:-84685217 Msa0382200:three_prime_UTR
GAAGAATTTCGAAGATTCTC+TGG 0.419860 3_1:-84687367 Msa0382200:three_prime_UTR
TGTCACACTGGGTTGGTTTG+TGG 0.422711 3_1:-84687733 Msa0382200:three_prime_UTR
ACATCCATTCAAAGATATCT+TGG 0.423871 3_1:-84686908 Msa0382200:three_prime_UTR
AAAATTAAGAGAGGGTAAAA+GGG 0.424229 3_1:+84689113 None:intergenic
TAAAGTAGAAATACTGATAT+GGG 0.429767 3_1:+84688168 None:intergenic
AGTTTGGACTCAAGTTTGTC+TGG 0.430371 3_1:-84687328 Msa0382200:three_prime_UTR
AGTAAAGGACAATAAGAAAA+GGG 0.431926 3_1:+84689212 None:intergenic
GCATCCTCAATGTACTCATT+TGG 0.432536 3_1:-84688377 Msa0382200:CDS
TTGTGAATTGCAGAAAATAG+AGG 0.434508 3_1:+84687986 None:intergenic
GGCCTCTTTGTTGTCACACT+GGG 0.434913 3_1:-84687744 Msa0382200:three_prime_UTR
AAGTAAAGGACAATAAGAAA+AGG 0.436020 3_1:+84689211 None:intergenic
GAATCGCCACATCTATTTCA+AGG 0.441565 3_1:+84685268 None:intergenic
GGGACTGTGAATACAAGAAA+TGG 0.443737 3_1:-84684938 Msa0382200:three_prime_UTR
ATCCACACCTTTAGATAAAC+CGG 0.444295 3_1:+84688669 None:intergenic
AGAAGGTTATTGGGTGTAAT+CGG 0.444905 3_1:+84685845 None:intergenic
CTTCAAACTATAAAGTGATT+CGG 0.448581 3_1:+84687504 None:intergenic
AATGCCTGGATCAACGTAGA+TGG 0.449609 3_1:+84687300 None:intergenic
CCAGCAAAAGGAGCATTTGA+TGG 0.452352 3_1:+84688709 None:intergenic
TCCTCAATGTACTCATTTGG+TGG 0.452439 3_1:-84688374 Msa0382200:CDS
TGTGTTACCGGTTTATCTAA+AGG 0.452554 3_1:-84688676 Msa0382200:intron
CTTGAAGTCATGCACTATAC+AGG 0.453779 3_1:-84687635 Msa0382200:three_prime_UTR
ATAGAGTCCAGAAGGTTATT+GGG 0.457546 3_1:+84685836 None:intergenic
CTGAAATGTCATCAAGCATC+AGG 0.464163 3_1:+84686536 None:intergenic
ATCTCGGAAAACCGGTCCAC+AGG 0.464717 3_1:+84685515 None:intergenic
TTGGCAGACCAATGGTTTGT+TGG 0.465550 3_1:-84686962 Msa0382200:three_prime_UTR
ATGTGTATGAGTTATTACTT+AGG 0.468174 3_1:-84685092 Msa0382200:three_prime_UTR
TGCCATCTGTTTCCACAGCA+TGG 0.475634 3_1:-84687860 Msa0382200:three_prime_UTR
TGCTCCATCTACGTTGATCC+AGG 0.475904 3_1:-84687304 Msa0382200:three_prime_UTR
TTACACCCCAAGTCTTCAAA+AGG 0.477167 3_1:-84684887 Msa0382200:three_prime_UTR
TGATGCAAAAGGGGATGAGA+AGG 0.477811 3_1:-84685717 Msa0382200:three_prime_UTR
CATCAGCATGATGCTGTAGT+AGG 0.481432 3_1:-84688299 Msa0382200:three_prime_UTR
GAAGACATGTAAAACCGTTA+TGG 0.482418 3_1:+84685465 None:intergenic
GAGTTATTACTTAGGGCATA+AGG 0.483600 3_1:-84685084 Msa0382200:three_prime_UTR
TCTTTGTTGTCACACTGGGT+TGG 0.484753 3_1:-84687740 Msa0382200:three_prime_UTR
AATATCACAAAAGCCGTGTC+AGG 0.485399 3_1:+84687610 None:intergenic
TGGGGATAACAATATGAAGT+TGG 0.486015 3_1:-84687476 Msa0382200:three_prime_UTR
TGATGCTTGATGACATTTCA+GGG 0.486927 3_1:-84686534 Msa0382200:three_prime_UTR
CCATGATCATGGTTCATAAG+AGG 0.487562 3_1:+84687891 None:intergenic
AATCAGAACTCTTCAACCAT+TGG 0.490906 3_1:-84688767 Msa0382200:CDS
TCAAGATGATTTAGAAGGAA+AGG 0.492055 3_1:+84688342 None:intergenic
AATTGCGGAGAGGATGAAAC+AGG 0.492134 3_1:+84688733 None:intergenic
CTGTTACATTAAAGATGTGT+TGG 0.492623 3_1:-84684995 Msa0382200:three_prime_UTR
TACACACCCAAGTCTTGAAA+AGG 0.493665 3_1:-84684845 Msa0382200:three_prime_UTR
GGACTGTGAATACAAGAAAT+GGG 0.494131 3_1:-84684937 Msa0382200:three_prime_UTR
GTTGAAGTTGCGAGTGGCAA+AGG 0.494441 3_1:-84688814 Msa0382200:CDS
CCGGTCCACAGGGAAGAGTA+TGG 0.500922 3_1:+84685526 None:intergenic
AAGGGCCGATCTCGGAAAAC+CGG 0.502602 3_1:+84685507 None:intergenic
TGTGTATGAGTTATTACTTA+GGG 0.502710 3_1:-84685091 Msa0382200:three_prime_UTR
TGGCCTCTTTGTTGTCACAC+TGG 0.503600 3_1:-84687745 Msa0382200:three_prime_UTR
TCGCCGTGGTCGTCGAATGC+AGG 0.505488 3_1:-84686237 Msa0382200:intron
CGAGTGGCAAAGGGTGTTCG+AGG 0.509530 3_1:-84688804 Msa0382200:CDS
AGGATGAAACAGGAGACATT+TGG 0.509792 3_1:+84688743 None:intergenic
AGTACATTGAGGATGCAGAT+TGG 0.510198 3_1:+84688384 None:intergenic
CCATACTCTTCCCTGTGGAC+CGG 0.511727 3_1:-84685526 Msa0382200:three_prime_UTR
GCAAGCAACAACCATGATCA+TGG 0.516567 3_1:+84687880 None:intergenic
ATGGAGGCTACAGAGAGATT+AGG 0.517779 3_1:-84688421 Msa0382200:CDS
GGAGCATTTGATGGCAATTG+CGG 0.518188 3_1:+84688718 None:intergenic
CTTCCCGGGTACACAAATGC+TGG 0.520659 3_1:-84687439 Msa0382200:three_prime_UTR
CATATAACAAGACCAGCAAA+AGG 0.535472 3_1:+84688697 None:intergenic
GCTGAAACTGCATCCAAAGA+AGG 0.536257 3_1:-84686992 Msa0382200:three_prime_UTR
ACAGGAGACATTTGGTCCAA+TGG 0.538148 3_1:+84688751 None:intergenic
TTGAAGTTGCGAGTGGCAAA+GGG 0.545784 3_1:-84688813 Msa0382200:CDS
ATTTCCAGCATTTGTGTACC+CGG 0.546283 3_1:+84687435 None:intergenic
TCTTGAGGAAGGGCCGATCT+CGG 0.547315 3_1:+84685499 None:intergenic
AAAGTCCATGACGATCTTCA+GGG 0.549038 3_1:-84686329 Msa0382200:three_prime_UTR
GGAGTGTGCAGAAGAAGTAA+AGG 0.549629 3_1:+84689197 None:intergenic
GTTGATTTGGCAAGACAAGT+TGG 0.550833 3_1:-84686559 Msa0382200:three_prime_UTR
AAGATTTCATGATGGTACTA+CGG 0.556839 3_1:+84687831 None:intergenic
GTTGGTTTGTGGATAGTGTC+AGG 0.558130 3_1:-84687722 Msa0382200:three_prime_UTR
ATATACTTACATGAACCCAT+TGG 0.558502 3_1:-84688262 Msa0382200:three_prime_UTR
GTGCTAGTTTGGCAGACCAA+TGG 0.559716 3_1:-84686970 Msa0382200:three_prime_UTR
GCCACATCTATTTCAAGGCT+AGG 0.562789 3_1:+84685273 None:intergenic
GTTAGTCATGTAGTCACTGA+AGG 0.562909 3_1:-84686932 Msa0382200:three_prime_UTR
TTTGAGCATGCAGTAAAGCA+TGG 0.564693 3_1:-84687777 Msa0382200:three_prime_UTR
GTAACAGTTATGGGTGGTGA+GGG 0.565849 3_1:-84688841 Msa0382200:exon
GTGGAACATGTCACTTGAGT+AGG 0.567006 3_1:-84684973 Msa0382200:three_prime_UTR
CACTATACAGGAACCTGACA+CGG 0.569964 3_1:-84687623 Msa0382200:three_prime_UTR
CAGATTCAAGACATGCGGAC+AGG 0.572808 3_1:-84685242 Msa0382200:three_prime_UTR
GTATCCAAGATATCTTTGAA+TGG 0.574153 3_1:+84686904 None:intergenic
GTAAGGAAACAGCGGAGCGT+GGG 0.574806 3_1:-84685200 Msa0382200:three_prime_UTR
ACCTTCTGGACTCTATCTGT+TGG 0.575317 3_1:-84685829 Msa0382200:three_prime_UTR
AGTAAGGAAACAGCGGAGCG+TGG 0.576929 3_1:-84685201 Msa0382200:three_prime_UTR
GCTTGATGACATTTCAGGGA+AGG 0.577574 3_1:-84686530 Msa0382200:intron
CAAATTGGGAAAATTAAGAG+AGG 0.577775 3_1:+84689104 None:intergenic
CAGCATGATGCTGTAGTAGG+AGG 0.577914 3_1:-84688296 Msa0382200:three_prime_UTR
TTCATCCGAATTGCAAAACA+AGG 0.577926 3_1:-84687278 Msa0382200:intron
AAATTAAGAGAGGGTAAAAG+GGG 0.585895 3_1:+84689114 None:intergenic
CATTACAGCCAACAAACCAT+TGG 0.587337 3_1:+84686954 None:intergenic
TACATTGAGGATGCAGATTG+GGG 0.589195 3_1:+84688386 None:intergenic
TAGAAGCACTCACTGTAATG+AGG 0.589590 3_1:+84686873 None:intergenic
TACTGCCCTGAAGATCGTCA+TGG 0.589825 3_1:+84686324 None:intergenic
AATAAGATATTGATGAGCAC+AGG 0.593011 3_1:+84687931 None:intergenic
TACAAAATATTGTGAAGTAG+CGG 0.596986 3_1:-84688045 Msa0382200:three_prime_UTR
GTGGATTCTCAAAACAGCTA+AGG 0.597139 3_1:-84686614 Msa0382200:three_prime_UTR
CCTTTCTGTTAGAGGACGTG+TGG 0.598952 3_1:+84685670 None:intergenic
AAAAGCTTCTCTTCATCACC+AGG 0.600801 3_1:+84688929 None:intergenic
TTACATTAAAGATGTGTTGG+TGG 0.602391 3_1:-84684992 Msa0382200:three_prime_UTR
TCTCGGAAAACCGGTCCACA+GGG 0.604616 3_1:+84685516 None:intergenic
TTGGGTGTAATCGGACGGAT+CGG 0.604793 3_1:+84685854 None:intergenic
GGTAACAGTTATGGGTGGTG+AGG 0.606272 3_1:-84688842 Msa0382200:exon
CCTCTTATGAACCATGATCA+TGG 0.608938 3_1:-84687891 Msa0382200:three_prime_UTR
ACCAACAGATAGAGTCCAGA+AGG 0.609079 3_1:+84685828 None:intergenic
CCACACGTCCTCTAACAGAA+AGG 0.609978 3_1:-84685670 Msa0382200:intron
GAAATGTTGAAGCGCGTGAG+TGG 0.613290 3_1:-84685129 Msa0382200:three_prime_UTR
ATATGTTAAAGATTTCATGA+TGG 0.613863 3_1:+84687823 None:intergenic
TGGAACATGTCACTTGAGTA+GGG 0.616343 3_1:-84684972 Msa0382200:three_prime_UTR
AGTGTATCGCAGAACAATAG+TGG 0.616508 3_1:+84688078 None:intergenic
ATCCATGCTGTGGAAACAGA+TGG 0.617621 3_1:+84687858 None:intergenic
CTACGGAAATATCCATGCTG+TGG 0.623393 3_1:+84687848 None:intergenic
AACCCAGTGTGACAACAAAG+AGG 0.624024 3_1:+84687742 None:intergenic
CTAAGGAGAAACAAGTGCAA+AGG 0.624728 3_1:-84686597 Msa0382200:three_prime_UTR
ACATAACTTGAAATTCAAAG+AGG 0.625524 3_1:+84688978 None:intergenic
GACTGTGAATACAAGAAATG+GGG 0.626820 3_1:-84684936 Msa0382200:three_prime_UTR
TTATAGTTTGAAGAATTATG+GGG 0.627002 3_1:-84687494 Msa0382200:three_prime_UTR
GGTTATTGGGTGTAATCGGA+CGG 0.627487 3_1:+84685849 None:intergenic
TGAGTAGGGTGCCCAAAATG+GGG 0.631792 3_1:-84684958 Msa0382200:three_prime_UTR
GCCTAGCCTTGAAATAGATG+TGG 0.639029 3_1:-84685274 Msa0382200:three_prime_UTR
TTAGTCATGTAGTCACTGAA+GGG 0.640621 3_1:-84686931 Msa0382200:three_prime_UTR
GAATATAGTGCAGTGGTGTG+AGG 0.641520 3_1:+84689244 None:intergenic
AGAAGCAAGGAATCAGGTCA+TGG 0.644925 3_1:-84688440 Msa0382200:CDS
GAGGCTACAGAGAGATTAGG+TGG 0.645575 3_1:-84688418 Msa0382200:CDS
TCTCACCATACTCTTCCCTG+TGG 0.646627 3_1:-84685531 Msa0382200:three_prime_UTR
ACCACCAAATGAGTACATTG+AGG 0.647498 3_1:+84688373 None:intergenic
TTTCCAGCATTTGTGTACCC+GGG 0.655427 3_1:+84687436 None:intergenic
AAGTAATAACTCATACACAT+TGG 0.664276 3_1:+84685095 None:intergenic
AAATTGGGAAAATTAAGAGA+GGG 0.670526 3_1:+84689105 None:intergenic
TCATACAGATTCAAGACATG+CGG 0.674214 3_1:-84685247 Msa0382200:three_prime_UTR
ATTTGATGGCAATTGCGGAG+AGG 0.674786 3_1:+84688723 None:intergenic
TGACCTGCATTCGACGACCA+CGG 0.680999 3_1:+84686234 None:intergenic
GCTATAGCACTGCTGCACAG+CGG 0.683726 3_1:-84688021 Msa0382200:three_prime_UTR
ATGATATTTCTCAGCCAGTG+TGG 0.684887 3_1:-84686633 Msa0382200:intron
GGTAGAGTTGAAGTTGCGAG+TGG 0.698549 3_1:-84688820 Msa0382200:CDS
AGCAAGGAATCAGGTCATGG+AGG 0.703167 3_1:-84688437 Msa0382200:CDS
ACTGTGAATACAAGAAATGG+GGG 0.709309 3_1:-84684935 Msa0382200:three_prime_UTR
GTGGTGGTAACAGTTATGGG+TGG 0.723421 3_1:-84688847 Msa0382200:exon
AATGGTGTCAGAAGTCGCCG+TGG 0.728899 3_1:-84686251 Msa0382200:three_prime_UTR
TTACTCAAGTAAGGAAACAG+CGG 0.729643 3_1:-84685208 Msa0382200:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGCTTTTTTTTTTTTTTAA+CGG - chr3_1:84687255-84687274 Msa0382200:intron 10.0%
!! TTTATAGTTTGAAGAATTAT+GGG - chr3_1:84686516-84686535 Msa0382200:intron 15.0%
!! TCCTATTTATAAGAAAAATT+TGG - chr3_1:84686783-84686802 Msa0382200:intron 15.0%
!! CCTATTTATAAGAAAAATTT+GGG - chr3_1:84686784-84686803 Msa0382200:intron 15.0%
!!! AAACATTTAGAATAATCTTT+TGG - chr3_1:84687183-84687202 Msa0382200:intron 15.0%
!! TATTATAACAAATGCTAATA+AGG + chr3_1:84688623-84688642 None:intergenic 15.0%
!!! TATTAGCATTTGTTATAATA+CGG - chr3_1:84688623-84688642 Msa0382200:intron 15.0%
!!! TGAATTTTTAGGATGAAAAA+TGG + chr3_1:84684838-84684857 None:intergenic 20.0%
!!! GTGAAATTTTTGAACAAATT+GGG + chr3_1:84684924-84684943 None:intergenic 20.0%
!! GTTAATGTTATTCTTTGAAT+TGG - chr3_1:84685539-84685558 Msa0382200:three_prime_UTR 20.0%
!! AAAATTCAAGATGATTTAGA+AGG + chr3_1:84685677-84685696 None:intergenic 20.0%
!!! AATTGTTTGCTTAACTTTTT+TGG - chr3_1:84685796-84685815 Msa0382200:three_prime_UTR 20.0%
!! TAAAGTAGAAATACTGATAT+GGG + chr3_1:84685846-84685865 None:intergenic 20.0%
!! ATAAAGTAGAAATACTGATA+TGG + chr3_1:84685847-84685866 None:intergenic 20.0%
!!! ATCTTGGTATTTTTAAATAG+TGG - chr3_1:84685865-84685884 Msa0382200:three_prime_UTR 20.0%
!! ATATGTTAAAGATTTCATGA+TGG + chr3_1:84686191-84686210 None:intergenic 20.0%
!! CTTTATAGTTTGAAGAATTA+TGG - chr3_1:84686515-84686534 Msa0382200:intron 20.0%
!! TTATAGTTTGAAGAATTATG+GGG - chr3_1:84686517-84686536 Msa0382200:intron 20.0%
!!! ATTTTTCTTATAAATAGGAC+CGG + chr3_1:84686782-84686801 None:intergenic 20.0%
!!! CCCAAATTTTTCTTATAAAT+AGG + chr3_1:84686787-84686806 None:intergenic 20.0%
!! TCAACAAAAGTTAATGAATT+TGG + chr3_1:84686846-84686865 None:intergenic 20.0%
!!! AATATCTAGACATTTTGTAA+TGG - chr3_1:84686908-84686927 Msa0382200:three_prime_UTR 20.0%
!! ATTAATATTATGCGATAAGT+AGG - chr3_1:84687312-84687331 Msa0382200:three_prime_UTR 20.0%
!! TCATTGTGATGTAAATAATA+CGG + chr3_1:84687344-84687363 None:intergenic 20.0%
!! CGAAATTAAATATTCCAATA+TGG + chr3_1:84688020-84688039 None:intergenic 20.0%
!!! TTTTGCATCAAAAAATATTG+AGG + chr3_1:84688284-84688303 None:intergenic 20.0%
!!! TCAATATTTTTTGATGCAAA+AGG - chr3_1:84688283-84688302 Msa0382200:three_prime_UTR 20.0%
!!! CAATATTTTTTGATGCAAAA+GGG - chr3_1:84688284-84688303 Msa0382200:three_prime_UTR 20.0%
!!! AATATTTTTTGATGCAAAAG+GGG - chr3_1:84688285-84688304 Msa0382200:three_prime_UTR 20.0%
!!! TATGGCTTAATATTTCATTT+TGG - chr3_1:84688414-84688433 Msa0382200:CDS 20.0%
!!! ATGGTTTTTAAATATCAACT+CGG + chr3_1:84688458-84688477 None:intergenic 20.0%
!!! TTGAAACGAATTGAATTTTT+GGG - chr3_1:84688843-84688862 Msa0382200:exon 20.0%
!!! TTTTTTTGAATATAGTGCAG+TGG + chr3_1:84684777-84684796 None:intergenic 25.0%
! AGTAAAGGACAATAAGAAAA+GGG + chr3_1:84684802-84684821 None:intergenic 25.0%
! AAGTAAAGGACAATAAGAAA+AGG + chr3_1:84684803-84684822 None:intergenic 25.0%
!! GAGACAAAGAATGAATTTTT+AGG + chr3_1:84684849-84684868 None:intergenic 25.0%
! AAAATTAAGAGAGGGTAAAA+GGG + chr3_1:84684901-84684920 None:intergenic 25.0%
! AAATTGGGAAAATTAAGAGA+GGG + chr3_1:84684909-84684928 None:intergenic 25.0%
!! GGTGAAATTTTTGAACAAAT+TGG + chr3_1:84684925-84684944 None:intergenic 25.0%
!! AATTTCACCTTTTTCCAATT+TGG - chr3_1:84684936-84684955 Msa0382200:three_prime_UTR 25.0%
!! ATTTCACCTTTTTCCAATTT+GGG - chr3_1:84684937-84684956 Msa0382200:three_prime_UTR 25.0%
!!! AATTGTTTTTTTGGTCAATG+AGG - chr3_1:84685000-84685019 Msa0382200:three_prime_UTR 25.0%
! ACATAACTTGAAATTCAAAG+AGG + chr3_1:84685036-84685055 None:intergenic 25.0%
!! TATATAGATTTTCAATTGCC+TGG - chr3_1:84685064-84685083 Msa0382200:three_prime_UTR 25.0%
! TGCTGATGCTATTATTATAT+AGG + chr3_1:84685700-84685719 None:intergenic 25.0%
!!! TAACAGAACTTTTTTCCAAT+GGG + chr3_1:84685767-84685786 None:intergenic 25.0%
!!! TTAACAGAACTTTTTTCCAA+TGG + chr3_1:84685768-84685787 None:intergenic 25.0%
!! AAGTTAAGCAAACAATTTTC+AGG + chr3_1:84685793-84685812 None:intergenic 25.0%
!! TCAGTATTTCTACTTTATCT+TGG - chr3_1:84685849-84685868 Msa0382200:three_prime_UTR 25.0%
!! TTTTTAAATAGTGGCTATAG+TGG - chr3_1:84685874-84685893 Msa0382200:intron 25.0%
! TACAAAATATTGTGAAGTAG+CGG - chr3_1:84685966-84685985 Msa0382200:intron 25.0%
!! TTTAACATATAGCACAGTTT+TGG - chr3_1:84686201-84686220 Msa0382200:intron 25.0%
! CTTCAAACTATAAAGTGATT+CGG + chr3_1:84686510-84686529 None:intergenic 25.0%
!!! ATTTACCTTGTTTTGCAATT+CGG + chr3_1:84686741-84686760 None:intergenic 25.0%
! CTCAAATTTCTCTTGTAAAT+AGG - chr3_1:84686866-84686885 Msa0382200:intron 25.0%
!!! CATTTAGAATAATCTTTTGG+AGG - chr3_1:84687186-84687205 Msa0382200:intron 25.0%
! TGATGTAAATAATACGGTAT+AGG + chr3_1:84687338-84687357 None:intergenic 25.0%
! GTATTTACAATTCCAAGAAA+AGG + chr3_1:84687537-84687556 None:intergenic 25.0%
! AAAATTAGCGAGTTTAATCT+TGG + chr3_1:84687559-84687578 None:intergenic 25.0%
! TCACAATTTCAAGAAAATGA+GGG + chr3_1:84687624-84687643 None:intergenic 25.0%
! ATCACAATTTCAAGAAAATG+AGG + chr3_1:84687625-84687644 None:intergenic 25.0%
! ATTGTAAATTCAGCGAAAAA+TGG - chr3_1:84687742-84687761 Msa0382200:three_prime_UTR 25.0%
! AAATCACATGTATAGATTAG+TGG + chr3_1:84687920-84687939 None:intergenic 25.0%
! AAAGATAACAAACTAAAGAC+AGG + chr3_1:84688057-84688076 None:intergenic 25.0%
!! ATTGAGGTATGATTTTCATT+AGG + chr3_1:84688268-84688287 None:intergenic 25.0%
! TTAAGCCATATTTACTACAT+CGG + chr3_1:84688404-84688423 None:intergenic 25.0%
!! GTTGAAACGAATTGAATTTT+TGG - chr3_1:84688842-84688861 Msa0382200:exon 25.0%
! AAGTAATAACTCATACACAT+TGG + chr3_1:84688919-84688938 None:intergenic 25.0%
! ATGTGTATGAGTTATTACTT+AGG - chr3_1:84688919-84688938 Msa0382200:five_prime_UTR 25.0%
! TGTGTATGAGTTATTACTTA+GGG - chr3_1:84688920-84688939 Msa0382200:five_prime_UTR 25.0%
!!! TTAAATCCTTTTCAAGACTT+GGG + chr3_1:84689175-84689194 None:intergenic 25.0%
!!! ATTAAATCCTTTTCAAGACT+TGG + chr3_1:84689176-84689195 None:intergenic 25.0%
!!! CTTTTGGTTTTTCATTGTTA+CGG - chr3_1:84689279-84689298 Msa0382200:five_prime_UTR 25.0%
! TTTTGTGTGTGATTCCATTT+TGG + chr3_1:84684718-84684737 None:intergenic 30.0%
AAATTAAGAGAGGGTAAAAG+GGG + chr3_1:84684900-84684919 None:intergenic 30.0%
GAAAATTAAGAGAGGGTAAA+AGG + chr3_1:84684902-84684921 None:intergenic 30.0%
CAAATTGGGAAAATTAAGAG+AGG + chr3_1:84684910-84684929 None:intergenic 30.0%
AACAAACCCAAATTGGAAAA+AGG + chr3_1:84684946-84684965 None:intergenic 30.0%
TCATGTCTTCTATGATTGAT+TGG - chr3_1:84685365-84685384 Msa0382200:intron 30.0%
CAATGACTTCAAGTAAGATA+AGG + chr3_1:84685406-84685425 None:intergenic 30.0%
CTTATCTTACTTGAAGTCAT+TGG - chr3_1:84685404-84685423 Msa0382200:intron 30.0%
TCATATACTTGAGCTTGAAA+AGG - chr3_1:84685459-84685478 Msa0382200:three_prime_UTR 30.0%
! TATTCTTTGAATTGGCGTTT+TGG - chr3_1:84685547-84685566 Msa0382200:three_prime_UTR 30.0%
TCAAGATGATTTAGAAGGAA+AGG + chr3_1:84685672-84685691 None:intergenic 30.0%
ATATACTTACATGAACCCAT+TGG - chr3_1:84685749-84685768 Msa0382200:three_prime_UTR 30.0%
! TTGTGTGAGAGAAGTAATTT+TGG - chr3_1:84685819-84685838 Msa0382200:three_prime_UTR 30.0%
TTGTGAATTGCAGAAAATAG+AGG + chr3_1:84686028-84686047 None:intergenic 30.0%
CAATTCACAATTGACAAAAC+TGG - chr3_1:84686038-84686057 Msa0382200:intron 30.0%
AATAAGATATTGATGAGCAC+AGG + chr3_1:84686083-84686102 None:intergenic 30.0%
AAGATTTCATGATGGTACTA+CGG + chr3_1:84686183-84686202 None:intergenic 30.0%
GTAAAGCATGGAACAAAAAA+TGG - chr3_1:84686246-84686265 Msa0382200:three_prime_UTR 30.0%
! TCATTTTGTCTACTACAGTA+AGG - chr3_1:84686480-84686499 Msa0382200:intron 30.0%
ATTTCTCTTGTAAATAGGAC+CGG - chr3_1:84686871-84686890 Msa0382200:intron 30.0%
ACATCCATTCAAAGATATCT+TGG - chr3_1:84687103-84687122 Msa0382200:intron 30.0%
GTATCCAAGATATCTTTGAA+TGG + chr3_1:84687110-84687129 None:intergenic 30.0%
AAAAAAGCAAAACAAGTGTG+AGG + chr3_1:84687245-84687264 None:intergenic 30.0%
TTACAATTCCAAGAAAAGGA+GGG + chr3_1:84687533-84687552 None:intergenic 30.0%
TTTACAATTCCAAGAAAAGG+AGG + chr3_1:84687534-84687553 None:intergenic 30.0%
TTCAACAAACCACTCAAATT+TGG - chr3_1:84687577-84687596 Msa0382200:three_prime_UTR 30.0%
! TTTTGCAAACCAAATTTGAG+TGG + chr3_1:84687589-84687608 None:intergenic 30.0%
CTGAATTTCATTGACATAAC+AGG - chr3_1:84687645-84687664 Msa0382200:three_prime_UTR 30.0%
AGCAAAATCAACAAACTTAG+AGG + chr3_1:84687894-84687913 None:intergenic 30.0%
TCTATACATGTGATTTGAGT+TGG - chr3_1:84687924-84687943 Msa0382200:three_prime_UTR 30.0%
!! TGTGATTTGAGTTGGTAATT+TGG - chr3_1:84687932-84687951 Msa0382200:three_prime_UTR 30.0%
! GTTCCTCATTCTTAACATTT+TGG - chr3_1:84687977-84687996 Msa0382200:three_prime_UTR 30.0%
AGACCAAAATGTTAAGAATG+AGG + chr3_1:84687983-84688002 None:intergenic 30.0%
!! AACATTTTGGTCTATGAAAC+TGG - chr3_1:84687990-84688009 Msa0382200:three_prime_UTR 30.0%
ATGAAACTGGATTTCCATAT+TGG - chr3_1:84688003-84688022 Msa0382200:three_prime_UTR 30.0%
! GGAATATTTAATTTCGAGCA+CGG - chr3_1:84688024-84688043 Msa0382200:three_prime_UTR 30.0%
! TTTTCCCGATGTAGTAAATA+TGG - chr3_1:84688396-84688415 Msa0382200:CDS 30.0%
TAAGCCATATTTACTACATC+GGG + chr3_1:84688403-84688422 None:intergenic 30.0%
! TCATATCCATGCATTTTATC+AGG - chr3_1:84688579-84688598 Msa0382200:intron 30.0%
! CTTTTACCTGATAAAATGCA+TGG + chr3_1:84688588-84688607 None:intergenic 30.0%
! CATGCATTTTATCAGGTAAA+AGG - chr3_1:84688586-84688605 Msa0382200:intron 30.0%
CTGTTACATTAAAGATGTGT+TGG - chr3_1:84689016-84689035 Msa0382200:five_prime_UTR 30.0%
TTACATTAAAGATGTGTTGG+TGG - chr3_1:84689019-84689038 Msa0382200:five_prime_UTR 30.0%
!! AGATAACCTTTTGAAGACTT+GGG + chr3_1:84689133-84689152 None:intergenic 30.0%
!! TAGATAACCTTTTGAAGACT+TGG + chr3_1:84689134-84689153 None:intergenic 30.0%
TGAAAAACCAAAAGTTCAAG+TGG + chr3_1:84689273-84689292 None:intergenic 30.0%
GACAAAAGGGGTTATAGAAT+TGG + chr3_1:84684871-84684890 None:intergenic 35.0%
TATGCAGAACAAACCCAAAT+TGG + chr3_1:84684953-84684972 None:intergenic 35.0%
!! TGTGTTGTTCACTGTTTTAG+TGG - chr3_1:84685145-84685164 Msa0382200:three_prime_UTR 35.0%
TTTAGTGGTGGTAACAGTTA+TGG - chr3_1:84685160-84685179 Msa0382200:three_prime_UTR 35.0%
TTAGTGGTGGTAACAGTTAT+GGG - chr3_1:84685161-84685180 Msa0382200:three_prime_UTR 35.0%
AATCAGAACTCTTCAACCAT+TGG - chr3_1:84685244-84685263 Msa0382200:three_prime_UTR 35.0%
CATATAACAAGACCAGCAAA+AGG + chr3_1:84685317-84685336 None:intergenic 35.0%
!! GGTCTTGTTATATGTGTTAC+CGG - chr3_1:84685323-84685342 Msa0382200:intron 35.0%
!! TGTGTTACCGGTTTATCTAA+AGG - chr3_1:84685335-84685354 Msa0382200:intron 35.0%
ATCCACACCTTTAGATAAAC+CGG + chr3_1:84685345-84685364 None:intergenic 35.0%
!! AACATATAGCACAGTTTTGG+CGG - chr3_1:84686204-84686223 Msa0382200:intron 35.0%
TGGGGATAACAATATGAAGT+TGG - chr3_1:84686535-84686554 Msa0382200:three_prime_UTR 35.0%
TTGATTTCATGGATTCTTGC+AGG + chr3_1:84686608-84686627 None:intergenic 35.0%
GATGAGTATGCTTGATTTCA+TGG + chr3_1:84686619-84686638 None:intergenic 35.0%
GAAGAATTTCGAAGATTCTC+TGG - chr3_1:84686644-84686663 Msa0382200:intron 35.0%
TTCATCCGAATTGCAAAACA+AGG - chr3_1:84686733-84686752 Msa0382200:intron 35.0%
TTCTTATAAATAGGACCGGA+GGG + chr3_1:84686778-84686797 None:intergenic 35.0%
TTTCTTATAAATAGGACCGG+AGG + chr3_1:84686779-84686798 None:intergenic 35.0%
ATATTTATTGCTACTCCCTC+CGG + chr3_1:84686893-84686912 None:intergenic 35.0%
AGATGCTTTACATGTTCGAT+AGG - chr3_1:84686994-84687013 Msa0382200:three_prime_UTR 35.0%
TTAGTCATGTAGTCACTGAA+GGG - chr3_1:84687080-84687099 Msa0382200:intron 35.0%
! TGTTAGCATGTCTGTTGATT+TGG - chr3_1:84687439-84687458 Msa0382200:three_prime_UTR 35.0%
! TGATGCTTGATGACATTTCA+GGG - chr3_1:84687477-84687496 Msa0382200:three_prime_UTR 35.0%
! TTTTGTCTTTTCAGTGGAGT+TGG - chr3_1:84687822-84687841 Msa0382200:three_prime_UTR 35.0%
!! CTCTAAGACACACAATTACA+TGG + chr3_1:84687858-84687877 None:intergenic 35.0%
CATGTAATTGTGTGTCTTAG+AGG - chr3_1:84687856-84687875 Msa0382200:three_prime_UTR 35.0%
GATAACAAACTAAAGACAGG+TGG + chr3_1:84688054-84688073 None:intergenic 35.0%
AGAAGGTTATTGGGTGTAAT+CGG + chr3_1:84688169-84688188 None:intergenic 35.0%
ATAGAGTCCAGAAGGTTATT+GGG + chr3_1:84688178-84688197 None:intergenic 35.0%
CTCTATCTGTTGGTCAATAT+CGG - chr3_1:84688192-84688211 Msa0382200:three_prime_UTR 35.0%
ACTGAAAGAGTCTGTGTAAA+TGG + chr3_1:84688236-84688255 None:intergenic 35.0%
GAAAGGTTGTTCTCAATTTG+TGG - chr3_1:84688358-84688377 Msa0382200:CDS 35.0%
TGAAAAACGTTCTTGAGGAA+GGG + chr3_1:84688525-84688544 None:intergenic 35.0%
!! AGAACGTTTTTCAGCCATAA+CGG - chr3_1:84688532-84688551 Msa0382200:intron 35.0%
GAAGACATGTAAAACCGTTA+TGG + chr3_1:84688549-84688568 None:intergenic 35.0%
! TAACGGTTTTACATGTCTTC+AGG - chr3_1:84688549-84688568 Msa0382200:intron 35.0%
! TTTTACATGTCTTCAGGTGT+TGG - chr3_1:84688555-84688574 Msa0382200:intron 35.0%
TCATACAGATTCAAGACATG+CGG - chr3_1:84688764-84688783 Msa0382200:CDS 35.0%
TCGATCAGTTTACTCAAGTA+AGG - chr3_1:84688794-84688813 Msa0382200:CDS 35.0%
TTACTCAAGTAAGGAAACAG+CGG - chr3_1:84688803-84688822 Msa0382200:CDS 35.0%
GAGTTATTACTTAGGGCATA+AGG - chr3_1:84688927-84688946 Msa0382200:five_prime_UTR 35.0%
GGACTGTGAATACAAGAAAT+GGG - chr3_1:84689074-84689093 Msa0382200:five_prime_UTR 35.0%
GACTGTGAATACAAGAAATG+GGG - chr3_1:84689075-84689094 Msa0382200:five_prime_UTR 35.0%
ACTGTGAATACAAGAAATGG+GGG - chr3_1:84689076-84689095 Msa0382200:five_prime_UTR 35.0%
!! GATAACCTTTTGAAGACTTG+GGG + chr3_1:84689132-84689151 None:intergenic 35.0%
! TTACGAACCACTTGAACTTT+TGG - chr3_1:84689263-84689282 Msa0382200:five_prime_UTR 35.0%
AAAGGGGAATCTGGACAAAA+GGG + chr3_1:84684884-84684903 None:intergenic 40.0%
AAAAGGGGAATCTGGACAAA+AGG + chr3_1:84684885-84684904 None:intergenic 40.0%
AAAAGCTTCTCTTCATCACC+AGG + chr3_1:84685085-84685104 None:intergenic 40.0%
!!! GTTGTTCACTGTTTTAGTGG+TGG - chr3_1:84685148-84685167 Msa0382200:three_prime_UTR 40.0%
AGGATGAAACAGGAGACATT+TGG + chr3_1:84685271-84685290 None:intergenic 40.0%
!! TACCGGTTTATCTAAAGGTG+TGG - chr3_1:84685340-84685359 Msa0382200:intron 40.0%
TACATTGAGGATGCAGATTG+GGG + chr3_1:84685628-84685647 None:intergenic 40.0%
GTACATTGAGGATGCAGATT+GGG + chr3_1:84685629-84685648 None:intergenic 40.0%
AGTACATTGAGGATGCAGAT+TGG + chr3_1:84685630-84685649 None:intergenic 40.0%
GCATCCTCAATGTACTCATT+TGG - chr3_1:84685634-84685653 Msa0382200:intron 40.0%
TCCTCAATGTACTCATTTGG+TGG - chr3_1:84685637-84685656 Msa0382200:intron 40.0%
ACCACCAAATGAGTACATTG+AGG + chr3_1:84685641-84685660 None:intergenic 40.0%
AGTGTATCGCAGAACAATAG+TGG + chr3_1:84685936-84685955 None:intergenic 40.0%
CCATGATCATGGTTCATAAG+AGG + chr3_1:84686123-84686142 None:intergenic 40.0%
CCTCTTATGAACCATGATCA+TGG - chr3_1:84686120-84686139 Msa0382200:intron 40.0%
TTTGAGCATGCAGTAAAGCA+TGG - chr3_1:84686234-84686253 Msa0382200:intron 40.0%
GTGGATAGTGTCAGGAAAAA+TGG - chr3_1:84686297-84686316 Msa0382200:three_prime_UTR 40.0%
CTTGAAGTCATGCACTATAC+AGG - chr3_1:84686376-84686395 Msa0382200:intron 40.0%
AATATCACAAAAGCCGTGTC+AGG + chr3_1:84686404-84686423 None:intergenic 40.0%
! GATGATTTTAGACTGCTTCC+CGG - chr3_1:84686557-84686576 Msa0382200:three_prime_UTR 40.0%
! ATGATTTTAGACTGCTTCCC+GGG - chr3_1:84686558-84686577 Msa0382200:three_prime_UTR 40.0%
ATTTCCAGCATTTGTGTACC+CGG + chr3_1:84686579-84686598 None:intergenic 40.0%
TGCAGAGTCTAACAGAAGTT+TGG - chr3_1:84686667-84686686 Msa0382200:intron 40.0%
AGTTTGGACTCAAGTTTGTC+TGG - chr3_1:84686683-84686702 Msa0382200:intron 40.0%
TTTATGCGATATACTCCCTC+CGG - chr3_1:84686760-84686779 Msa0382200:intron 40.0%
CAGTTTCCTCTGTTTCAGTT+AGG - chr3_1:84686934-84686953 Msa0382200:three_prime_UTR 40.0%
!! ATCCAAAGAAGGTGCTAGTT+TGG - chr3_1:84687030-84687049 Msa0382200:intron 40.0%
CATTACAGCCAACAAACCAT+TGG + chr3_1:84687060-84687079 None:intergenic 40.0%
GTTAGTCATGTAGTCACTGA+AGG - chr3_1:84687079-84687098 Msa0382200:intron 40.0%
!! TAGAAGCACTCACTGTAATG+AGG + chr3_1:84687141-84687160 None:intergenic 40.0%
TGTCTTCCAGAAGATGTACA+GGG + chr3_1:84687282-84687301 None:intergenic 40.0%
ATGTCTTCCAGAAGATGTAC+AGG + chr3_1:84687283-84687302 None:intergenic 40.0%
ATGATATTTCTCAGCCAGTG+TGG - chr3_1:84687378-84687397 Msa0382200:three_prime_UTR 40.0%
GTGGATTCTCAAAACAGCTA+AGG - chr3_1:84687397-84687416 Msa0382200:three_prime_UTR 40.0%
CTAAGGAGAAACAAGTGCAA+AGG - chr3_1:84687414-84687433 Msa0382200:three_prime_UTR 40.0%
!! GTTGATTTGGCAAGACAAGT+TGG - chr3_1:84687452-84687471 Msa0382200:three_prime_UTR 40.0%
CTGAAATGTCATCAAGCATC+AGG + chr3_1:84687478-84687497 None:intergenic 40.0%
! CTGATGCTTGATGACATTTC+AGG - chr3_1:84687476-84687495 Msa0382200:three_prime_UTR 40.0%
CAAGAAAAGGAGGGAAATCT+AGG + chr3_1:84687524-84687543 None:intergenic 40.0%
! CTAGATTTCCCTCCTTTTCT+TGG - chr3_1:84687522-84687541 Msa0382200:three_prime_UTR 40.0%
CAAGAAAATGAGGGAAGTCT+AGG + chr3_1:84687615-84687634 None:intergenic 40.0%
AAAAGTCCATGACGATCTTC+AGG - chr3_1:84687681-84687700 Msa0382200:three_prime_UTR 40.0%
AAAGTCCATGACGATCTTCA+GGG - chr3_1:84687682-84687701 Msa0382200:three_prime_UTR 40.0%
CAGGGCAGTAAAAGTGAAAT+TGG - chr3_1:84687700-84687719 Msa0382200:three_prime_UTR 40.0%
CACTGAAAAGACAAAAGTGG+AGG + chr3_1:84687818-84687837 None:intergenic 40.0%
!! CTCCACTTTTGTCTTTTCAG+TGG - chr3_1:84687816-84687835 Msa0382200:three_prime_UTR 40.0%
CTCCACTGAAAAGACAAAAG+TGG + chr3_1:84687821-84687840 None:intergenic 40.0%
GATTACACCCAATAACCTTC+TGG - chr3_1:84688168-84688187 Msa0382200:three_prime_UTR 40.0%
GATAGAGTCCAGAAGGTTAT+TGG + chr3_1:84688179-84688198 None:intergenic 40.0%
GAGAACAACCTTTCTGTTAG+AGG + chr3_1:84688352-84688371 None:intergenic 40.0%
TTCTCAATTTGTGGCCTGAT+GGG - chr3_1:84688367-84688386 Msa0382200:CDS 40.0%
CGGGAAAAAATATACCCATC+AGG + chr3_1:84688384-84688403 None:intergenic 40.0%
! GGAAGAGTATGGTGAGAAAA+TGG + chr3_1:84688477-84688496 None:intergenic 40.0%
CTGAAAAACGTTCTTGAGGA+AGG + chr3_1:84688526-84688545 None:intergenic 40.0%
ATGGCTGAAAAACGTTCTTG+AGG + chr3_1:84688530-84688549 None:intergenic 40.0%
TCAGGTAAAAGGAAACTTGC+AGG - chr3_1:84688597-84688616 Msa0382200:intron 40.0%
TGTCGTCACTAATGAGACAA+TGG - chr3_1:84688685-84688704 Msa0382200:CDS 40.0%
CACTAATGAGACAATGGATG+TGG - chr3_1:84688691-84688710 Msa0382200:CDS 40.0%
! GATGTGGCGATTTTTGTGAT+AGG - chr3_1:84688707-84688726 Msa0382200:CDS 40.0%
GAATCGCCACATCTATTTCA+AGG + chr3_1:84688746-84688765 None:intergenic 40.0%
! TGGAACATGTCACTTGAGTA+GGG - chr3_1:84689039-84689058 Msa0382200:five_prime_UTR 40.0%
! GTATTCACAGTCCCCATTTT+GGG + chr3_1:84689067-84689086 None:intergenic 40.0%
! TGTATTCACAGTCCCCATTT+TGG + chr3_1:84689068-84689087 None:intergenic 40.0%
GGGACTGTGAATACAAGAAA+TGG - chr3_1:84689073-84689092 Msa0382200:five_prime_UTR 40.0%
GAATACAAGAAATGGGGGAT+TGG - chr3_1:84689081-84689100 Msa0382200:five_prime_UTR 40.0%
!! AAATGGGGGATTGGCTTATA+TGG - chr3_1:84689090-84689109 Msa0382200:five_prime_UTR 40.0%
TTACACCCCAAGTCTTCAAA+AGG - chr3_1:84689124-84689143 Msa0382200:intron 40.0%
TACACACCCAAGTCTTGAAA+AGG - chr3_1:84689166-84689185 Msa0382200:five_prime_UTR 40.0%
GAATATAGTGCAGTGGTGTG+AGG + chr3_1:84684770-84684789 None:intergenic 45.0%
GGAGTGTGCAGAAGAAGTAA+AGG + chr3_1:84684817-84684836 None:intergenic 45.0%
AAGGGGAATCTGGACAAAAG+GGG + chr3_1:84684883-84684902 None:intergenic 45.0%
GTAACAGTTATGGGTGGTGA+GGG - chr3_1:84685170-84685189 Msa0382200:three_prime_UTR 45.0%
TTGAAGTTGCGAGTGGCAAA+GGG - chr3_1:84685198-84685217 Msa0382200:three_prime_UTR 45.0%
ACAGGAGACATTTGGTCCAA+TGG + chr3_1:84685263-84685282 None:intergenic 45.0%
AATTGCGGAGAGGATGAAAC+AGG + chr3_1:84685281-84685300 None:intergenic 45.0%
! ATTTGATGGCAATTGCGGAG+AGG + chr3_1:84685291-84685310 None:intergenic 45.0%
! GGAGCATTTGATGGCAATTG+CGG + chr3_1:84685296-84685315 None:intergenic 45.0%
!! CCAGCAAAAGGAGCATTTGA+TGG + chr3_1:84685305-84685324 None:intergenic 45.0%
! CCATCAAATGCTCCTTTTGC+TGG - chr3_1:84685302-84685321 Msa0382200:intron 45.0%
TTTGGCAGAAGCAAGGAATC+AGG - chr3_1:84685565-84685584 Msa0382200:three_prime_UTR 45.0%
AGAAGCAAGGAATCAGGTCA+TGG - chr3_1:84685571-84685590 Msa0382200:intron 45.0%
ATGGAGGCTACAGAGAGATT+AGG - chr3_1:84685590-84685609 Msa0382200:intron 45.0%
CATCAGCATGATGCTGTAGT+AGG - chr3_1:84685712-84685731 Msa0382200:three_prime_UTR 45.0%
GCAAGCAACAACCATGATCA+TGG + chr3_1:84686134-84686153 None:intergenic 45.0%
ATCCATGCTGTGGAAACAGA+TGG + chr3_1:84686156-84686175 None:intergenic 45.0%
CTACGGAAATATCCATGCTG+TGG + chr3_1:84686166-84686185 None:intergenic 45.0%
AACCCAGTGTGACAACAAAG+AGG + chr3_1:84686272-84686291 None:intergenic 45.0%
! TCTTTGTTGTCACACTGGGT+TGG - chr3_1:84686271-84686290 Msa0382200:three_prime_UTR 45.0%
!! GTTGGTTTGTGGATAGTGTC+AGG - chr3_1:84686289-84686308 Msa0382200:three_prime_UTR 45.0%
CACTATACAGGAACCTGACA+CGG - chr3_1:84686388-84686407 Msa0382200:intron 45.0%
TTTCCAGCATTTGTGTACCC+GGG + chr3_1:84686578-84686597 None:intergenic 45.0%
AATGCCTGGATCAACGTAGA+TGG + chr3_1:84686714-84686733 None:intergenic 45.0%
TGCAATTCGGATGAAATGCC+TGG + chr3_1:84686728-84686747 None:intergenic 45.0%
TCTCTTGTAAATAGGACCGG+AGG - chr3_1:84686874-84686893 Msa0382200:intron 45.0%
CTCTTGTAAATAGGACCGGA+GGG - chr3_1:84686875-84686894 Msa0382200:intron 45.0%
! GCGTATGACTGAAGTGTTCT+CGG - chr3_1:84686960-84686979 Msa0382200:three_prime_UTR 45.0%
GCTGAAACTGCATCCAAAGA+AGG - chr3_1:84687019-84687038 Msa0382200:intron 45.0%
TGCCAAACTAGCACCTTCTT+TGG + chr3_1:84687035-84687054 None:intergenic 45.0%
! TTGGCAGACCAATGGTTTGT+TGG - chr3_1:84687049-84687068 Msa0382200:intron 45.0%
!!! GCTGTTTTGAGAATCCACAC+TGG + chr3_1:84687395-84687414 None:intergenic 45.0%
! GCTTGATGACATTTCAGGGA+AGG - chr3_1:84687481-84687500 Msa0382200:three_prime_UTR 45.0%
GGTTATTGGGTGTAATCGGA+CGG + chr3_1:84688165-84688184 None:intergenic 45.0%
ACCTTCTGGACTCTATCTGT+TGG - chr3_1:84688182-84688201 Msa0382200:three_prime_UTR 45.0%
ACCAACAGATAGAGTCCAGA+AGG + chr3_1:84688186-84688205 None:intergenic 45.0%
TGATGCAAAAGGGGATGAGA+AGG - chr3_1:84688294-84688313 Msa0382200:three_prime_UTR 45.0%
GTTCTCAATTTGTGGCCTGA+TGG - chr3_1:84688366-84688385 Msa0382200:CDS 45.0%
!! GCCTAGCCTTGAAATAGATG+TGG - chr3_1:84688737-84688756 Msa0382200:CDS 45.0%
GCCACATCTATTTCAAGGCT+AGG + chr3_1:84688741-84688760 None:intergenic 45.0%
! GTGGAACATGTCACTTGAGT+AGG - chr3_1:84689038-84689057 Msa0382200:five_prime_UTR 45.0%
! TTGAGTAGGGTGCCCAAAAT+GGG - chr3_1:84689052-84689071 Msa0382200:five_prime_UTR 45.0%
!!! AATATTAAAAATTGTTTTTT+TGG - chr3_1:84684991-84685010 Msa0382200:three_prime_UTR 5.0%
GAGAGGGTAAAAGGGGAATC+TGG + chr3_1:84684893-84684912 None:intergenic 50.0%
GTGGTGGTAACAGTTATGGG+TGG - chr3_1:84685164-84685183 Msa0382200:three_prime_UTR 50.0%
GGTAACAGTTATGGGTGGTG+AGG - chr3_1:84685169-84685188 Msa0382200:three_prime_UTR 50.0%
GGTAGAGTTGAAGTTGCGAG+TGG - chr3_1:84685191-84685210 Msa0382200:three_prime_UTR 50.0%
GTTGAAGTTGCGAGTGGCAA+AGG - chr3_1:84685197-84685216 Msa0382200:three_prime_UTR 50.0%
!! TTGGCGTTTTGGCAGAAGCA+AGG - chr3_1:84685558-84685577 Msa0382200:three_prime_UTR 50.0%
AGCAAGGAATCAGGTCATGG+AGG - chr3_1:84685574-84685593 Msa0382200:intron 50.0%
GAGGCTACAGAGAGATTAGG+TGG - chr3_1:84685593-84685612 Msa0382200:intron 50.0%
GATGCAGATTGGGGCTATAC+TGG + chr3_1:84685619-84685638 None:intergenic 50.0%
CAGCATGATGCTGTAGTAGG+AGG - chr3_1:84685715-84685734 Msa0382200:three_prime_UTR 50.0%
TGCCATCTGTTTCCACAGCA+TGG - chr3_1:84686151-84686170 Msa0382200:intron 50.0%
! TGGCCTCTTTGTTGTCACAC+TGG - chr3_1:84686266-84686285 Msa0382200:three_prime_UTR 50.0%
! GGCCTCTTTGTTGTCACACT+GGG - chr3_1:84686267-84686286 Msa0382200:three_prime_UTR 50.0%
!! TGTCACACTGGGTTGGTTTG+TGG - chr3_1:84686278-84686297 Msa0382200:three_prime_UTR 50.0%
TGCTCCATCTACGTTGATCC+AGG - chr3_1:84686707-84686726 Msa0382200:intron 50.0%
! CGCTAGCCTAACTGAAACAG+AGG + chr3_1:84686943-84686962 None:intergenic 50.0%
! GTGCTAGTTTGGCAGACCAA+TGG - chr3_1:84687041-84687060 Msa0382200:intron 50.0%
AACGGTCCCTGTACATCTTC+TGG - chr3_1:84687273-84687292 Msa0382200:intron 50.0%
TACTGCCCTGAAGATCGTCA+TGG + chr3_1:84687690-84687709 None:intergenic 50.0%
TTGGGTGTAATCGGACGGAT+CGG + chr3_1:84688160-84688179 None:intergenic 50.0%
CCTTTCTGTTAGAGGACGTG+TGG + chr3_1:84688344-84688363 None:intergenic 50.0%
CCACACGTCCTCTAACAGAA+AGG - chr3_1:84688341-84688360 Msa0382200:exon 50.0%
TCTCACCATACTCTTCCCTG+TGG - chr3_1:84688480-84688499 Msa0382200:intron 50.0%
CAGATTCAAGACATGCGGAC+AGG - chr3_1:84688769-84688788 Msa0382200:CDS 50.0%
GAAATGTTGAAGCGCGTGAG+TGG - chr3_1:84688882-84688901 Msa0382200:five_prime_UTR 50.0%
! CTTGAGTAGGGTGCCCAAAA+TGG - chr3_1:84689051-84689070 Msa0382200:five_prime_UTR 50.0%
! TGAGTAGGGTGCCCAAAATG+GGG - chr3_1:84689053-84689072 Msa0382200:five_prime_UTR 50.0%
GCTATAGCACTGCTGCACAG+CGG - chr3_1:84685990-84686009 Msa0382200:intron 55.0%
CTTCCCGGGTACACAAATGC+TGG - chr3_1:84686572-84686591 Msa0382200:three_prime_UTR 55.0%
! AATGGTGTCAGAAGTCGCCG+TGG - chr3_1:84687760-84687779 Msa0382200:three_prime_UTR 55.0%
TGACCTGCATTCGACGACCA+CGG + chr3_1:84687780-84687799 None:intergenic 55.0%
CCATACTCTTCCCTGTGGAC+CGG - chr3_1:84688485-84688504 Msa0382200:intron 55.0%
TCTCGGAAAACCGGTCCACA+GGG + chr3_1:84688498-84688517 None:intergenic 55.0%
ATCTCGGAAAACCGGTCCAC+AGG + chr3_1:84688499-84688518 None:intergenic 55.0%
!! GTGGACCGGTTTTCCGAGAT+CGG - chr3_1:84688499-84688518 Msa0382200:intron 55.0%
AAGGGCCGATCTCGGAAAAC+CGG + chr3_1:84688507-84688526 None:intergenic 55.0%
TCTTGAGGAAGGGCCGATCT+CGG + chr3_1:84688515-84688534 None:intergenic 55.0%
AGTAAGGAAACAGCGGAGCG+TGG - chr3_1:84688810-84688829 Msa0382200:CDS 55.0%
GTAAGGAAACAGCGGAGCGT+GGG - chr3_1:84688811-84688830 Msa0382200:CDS 55.0%
!! CGAGTGGCAAAGGGTGTTCG+AGG - chr3_1:84685207-84685226 Msa0382200:three_prime_UTR 60.0%
CCGGTCCACAGGGAAGAGTA+TGG + chr3_1:84688488-84688507 None:intergenic 60.0%
TCGCCGTGGTCGTCGAATGC+AGG - chr3_1:84687774-84687793 Msa0382200:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 84684714 84689319 84684714 ID=Msa0382200;Name=Msa0382200
chr3_1 mRNA 84684714 84689319 84684714 ID=Msa0382200-mRNA-1;Parent=Msa0382200;Name=Msa0382200-mRNA-1;_AED=0.03;_eAED=0.03;_QI=445|1|1|1|0.87|0.66|9|2398|98
chr3_1 exon 84684714 84685304 84684714 ID=Msa0382200-mRNA-1:exon:22106;Parent=Msa0382200-mRNA-1
chr3_1 exon 84685433 84685586 84685433 ID=Msa0382200-mRNA-1:exon:22105;Parent=Msa0382200-mRNA-1
chr3_1 exon 84685671 84685888 84685671 ID=Msa0382200-mRNA-1:exon:22104;Parent=Msa0382200-mRNA-1
chr3_1 exon 84686238 84686366 84686238 ID=Msa0382200-mRNA-1:exon:22103;Parent=Msa0382200-mRNA-1
chr3_1 exon 84686531 84686641 84686531 ID=Msa0382200-mRNA-1:exon:22102;Parent=Msa0382200-mRNA-1
chr3_1 exon 84686886 84687017 84686886 ID=Msa0382200-mRNA-1:exon:22101;Parent=Msa0382200-mRNA-1
chr3_1 exon 84687279 84688460 84687279 ID=Msa0382200-mRNA-1:exon:22100;Parent=Msa0382200-mRNA-1
chr3_1 exon 84688677 84689139 84688677 ID=Msa0382200-mRNA-1:exon:22099;Parent=Msa0382200-mRNA-1
chr3_1 exon 84689160 84689319 84689160 ID=Msa0382200-mRNA-1:exon:22098;Parent=Msa0382200-mRNA-1
chr3_1 five_prime_UTR 84689160 84689319 84689160 ID=Msa0382200-mRNA-1:five_prime_utr;Parent=Msa0382200-mRNA-1
chr3_1 five_prime_UTR 84688855 84689139 84688855 ID=Msa0382200-mRNA-1:five_prime_utr;Parent=Msa0382200-mRNA-1
chr3_1 CDS 84688677 84688854 84688677 ID=Msa0382200-mRNA-1:cds;Parent=Msa0382200-mRNA-1
chr3_1 CDS 84688342 84688460 84688342 ID=Msa0382200-mRNA-1:cds;Parent=Msa0382200-mRNA-1
chr3_1 three_prime_UTR 84687279 84688341 84687279 ID=Msa0382200-mRNA-1:three_prime_utr;Parent=Msa0382200-mRNA-1
chr3_1 three_prime_UTR 84686886 84687017 84686886 ID=Msa0382200-mRNA-1:three_prime_utr;Parent=Msa0382200-mRNA-1
chr3_1 three_prime_UTR 84686531 84686641 84686531 ID=Msa0382200-mRNA-1:three_prime_utr;Parent=Msa0382200-mRNA-1
chr3_1 three_prime_UTR 84686238 84686366 84686238 ID=Msa0382200-mRNA-1:three_prime_utr;Parent=Msa0382200-mRNA-1
chr3_1 three_prime_UTR 84685671 84685888 84685671 ID=Msa0382200-mRNA-1:three_prime_utr;Parent=Msa0382200-mRNA-1
chr3_1 three_prime_UTR 84685433 84685586 84685433 ID=Msa0382200-mRNA-1:three_prime_utr;Parent=Msa0382200-mRNA-1
chr3_1 three_prime_UTR 84684714 84685304 84684714 ID=Msa0382200-mRNA-1:three_prime_utr;Parent=Msa0382200-mRNA-1
Gene Sequence

>Msa0382200

ATGGGTGGTGAGGGTAGAGTTGAAGTTGCGAGTGGCAAAGGGTGTTCGAGGCTGTTTTCGTCTTCAATCAGAACTCTTCAACCATTGGACCAAATGTCTCCTGTTTCATCCTCTCCGCAATTGCCATCAAATGCTCCTTTTGCTGGTCTTGTTATATGTGTTACCGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGCCAGTATAGCCCCAATCTGCATCCTCAATGTACTCATTTGGTGGTTCAGATATCCTTTCCTTCTAAATCATCTTGA
Protein sequence

>Msa0382200

MGGEGRVEVASGKGCSRLFSSSIRTLQPLDQMSPVSSSPQLPSNAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVVQISFPSKSS*