AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0283640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0283640 MtrunA17_Chr4g0059521 96.914 162 5 0 1 162 314 475 2.99e-112 328
Msa0283640 MtrunA17_Chr3g0118121 80.864 162 31 0 1 162 314 475 1.23e-96 288
Msa0283640 MtrunA17_Chr3g0118081 80.247 162 32 0 1 162 344 505 8.33e-94 282
Msa0283640 MtrunA17_Chr6g0485301 42.000 150 85 1 10 159 332 479 5.53e-40 141
Msa0283640 MtrunA17_Chr6g0485311 41.558 154 88 1 6 159 326 477 1.96e-39 139
Msa0283640 MtrunA17_Chr8g0390631 40.881 159 92 1 1 159 315 471 5.91e-39 138
Msa0283640 MtrunA17_Chr8g0390651 41.333 150 86 1 10 159 333 480 4.81e-38 136
Msa0283640 MtrunA17_Chr3g0117861 41.447 152 87 1 10 161 372 521 1.27e-34 127
Msa0283640 MtrunA17_Chr8g0365221 40.789 152 88 1 10 161 371 520 1.78e-34 127
Msa0283640 MtrunA17_Chr2g0310091 39.506 162 96 1 1 162 360 519 1.74e-33 124
Msa0283640 MtrunA17_Chr4g0059221 38.816 152 91 1 10 161 374 523 3.25e-32 120
Msa0283640 MtrunA17_Chr2g0294411 33.918 171 99 4 1 162 352 517 3.33e-22 92.8
Msa0283640 MtrunA17_Chr2g0300801 36.471 170 94 6 6 167 326 489 3.84e-20 86.7
Msa0283640 MtrunA17_Chr2g0279751 31.138 167 109 4 1 163 311 475 2.04e-16 75.9
Msa0283640 MtrunA17_Chr4g0049641 29.940 167 111 4 1 163 338 502 4.03e-16 75.1
Msa0283640 MtrunA17_Chr4g0074171 31.507 146 94 2 13 157 329 469 4.68e-15 72.0
Msa0283640 MtrunA17_Chr1g0149961 30.864 162 101 4 1 157 314 469 2.44e-14 70.1
Msa0283640 MtrunA17_Chr8g0372381 28.105 153 104 3 12 162 280 428 1.09e-12 65.1
Msa0283640 MtrunA17_Chr3g0124811 28.947 152 101 4 12 161 290 436 1.39e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0283640 AT1G74920.1 82.716 162 28 0 1 162 314 475 2.63e-99 295
Msa0283640 AT1G74920.2 82.716 162 28 0 1 162 309 470 2.81e-99 295
Msa0283640 AT3G48170.1 79.012 162 34 0 1 162 314 475 3.88e-95 285
Msa0283640 AT3G24503.1 44.025 159 87 1 1 159 322 478 1.20e-40 143
Msa0283640 AT1G23800.1 37.908 153 93 1 9 161 363 513 2.59e-33 124
Msa0283640 AT3G48000.1 39.474 152 90 1 10 161 368 517 3.99e-33 123
Msa0283640 AT1G79440.1 40.506 158 92 1 5 162 355 510 9.96e-33 122
Msa0283640 AT3G66658.1 33.333 171 100 4 1 162 352 517 1.76e-22 93.6
Msa0283640 AT3G66658.2 33.333 171 100 4 1 162 352 517 2.25e-22 93.6
Msa0283640 AT1G54100.2 35.928 167 99 5 6 167 325 488 1.83e-18 82.0
Msa0283640 AT1G54100.1 35.928 167 99 5 6 167 325 488 1.83e-18 82.0
Msa0283640 AT2G14170.3 30.337 178 118 4 1 174 410 585 4.90e-18 80.9
Msa0283640 AT2G14170.2 31.138 167 109 4 1 163 301 465 9.85e-17 77.4
Msa0283640 AT2G14170.1 31.138 167 109 4 1 163 410 574 1.20e-16 77.0
Msa0283640 AT4G36250.1 29.560 159 105 4 5 161 276 429 7.40e-13 65.9
Msa0283640 AT2G24270.2 30.612 147 94 3 13 157 369 509 5.11e-12 63.5
Msa0283640 AT2G24270.4 30.612 147 94 3 13 157 329 469 5.27e-12 63.5
Msa0283640 AT2G24270.3 30.137 146 96 2 13 157 329 469 5.89e-12 63.5
Msa0283640 AT2G24270.1 30.137 146 96 2 13 157 329 469 5.89e-12 63.5

Find 42 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCTGATGCAGGCATTTA+AGG 0.134214 2_3:-21036765 Msa0283640:intron
ATTTGGAAAGAAGAAGTATT+TGG 0.232708 2_3:-21037087 Msa0283640:CDS
TGACTACTTCCATGCAAATT+TGG 0.235483 2_3:-21037104 Msa0283640:CDS
GGCACTAAACGTAGTGGTTT+TGG 0.274232 2_3:-21036686 Msa0283640:CDS
CATTTAAGGCCGGAATAGTA+TGG 0.290640 2_3:-21036751 Msa0283640:CDS
ATCCCTTGGAAGAAGGTTGC+AGG 0.381818 2_3:-21037776 Msa0283640:CDS
GCAATTGACCCATACTATTC+CGG 0.433561 2_3:+21036742 None:intergenic
ATGCTTCACTCAAGCGCCAT+GGG 0.461661 2_3:-21036711 Msa0283640:CDS
CATCAAAATTGCAGATCCCT+TGG 0.463562 2_3:-21037790 Msa0283640:CDS
GTCCTCTACAGCTATGGCTT+AGG 0.463601 2_3:-21036909 Msa0283640:intron
TTGGAAGAAGGTTGCAGGCT+AGG 0.466614 2_3:-21037771 Msa0283640:CDS
ACCTGTTGTTAGTGAAGGGC+AGG 0.473564 2_3:-21037748 Msa0283640:intron
ACCTGCCCTTCACTAACAAC+AGG 0.480135 2_3:+21037747 None:intergenic
GTCACATCAGTTATGATGGT+TGG 0.495328 2_3:+21037123 None:intergenic
ATTGCAGATCCCTTGGAAGA+AGG 0.495747 2_3:-21037783 Msa0283640:CDS
TTCTTCTTTCCAAATTTGCA+TGG 0.496084 2_3:+21037095 None:intergenic
CAATGGCAGCATCTAAAGAA+AGG 0.502314 2_3:-21037159 Msa0283640:intron
AAGATGTGAGCGTGTAACTA+AGG 0.508552 2_3:-21036859 Msa0283640:intron
CATGCTTCACTCAAGCGCCA+TGG 0.516509 2_3:-21036712 Msa0283640:CDS
CATACCATGCTCCTAGTTCA+CGG 0.516542 2_3:+21036663 None:intergenic
GTACATCTCTGATGAACCAT+GGG 0.525895 2_3:-21036101 Msa0283640:exon
AGTAGTCACATCAGTTATGA+TGG 0.526637 2_3:+21037119 None:intergenic
TAGCCTGCAACCTTCTTCCA+AGG 0.540093 2_3:+21037773 None:intergenic
CTAGGACCTGTTGTTAGTGA+AGG 0.541728 2_3:-21037753 Msa0283640:CDS
GACTGGTGGGTCTCGACCAG+AGG 0.561492 2_3:-21037262 Msa0283640:intron
TTCACTCAAGCGCCATGGGG+AGG 0.565972 2_3:-21036707 Msa0283640:CDS
CTGATGCAGGCATTTAAGGC+CGG 0.567654 2_3:-21036761 Msa0283640:intron
TAGGACCTGTTGTTAGTGAA+GGG 0.592104 2_3:-21037752 Msa0283640:CDS
TAGATCAATAGCTTCTTCCT+CGG 0.596377 2_3:+21037035 None:intergenic
AGCCTGCAACCTTCTTCCAA+GGG 0.599460 2_3:+21037774 None:intergenic
ATTTAAGGCCGGAATAGTAT+GGG 0.604605 2_3:-21036750 Msa0283640:CDS
GTCTCGAACACTAAGAGTGA+GGG 0.612653 2_3:-21037297 Msa0283640:CDS
AGTACATCTCTGATGAACCA+TGG 0.616407 2_3:-21036102 Msa0283640:exon
CTACGTTTAGTGCCTCCCCA+TGG 0.627337 2_3:+21036695 None:intergenic
CATGGCGCTTGAGTGAAGCA+TGG 0.643282 2_3:+21036713 None:intergenic
TGTCTCGAACACTAAGAGTG+AGG 0.645132 2_3:-21037298 Msa0283640:CDS
TTGGCCGTGAACTAGGAGCA+TGG 0.648118 2_3:-21036667 Msa0283640:intron
AGAGGTTGGTACCATCCCCA+TGG 0.649336 2_3:+21036085 None:intergenic
TGCTTCACTCAAGCGCCATG+GGG 0.659834 2_3:-21036710 Msa0283640:CDS
TCTCTGATGAACCATGGGGA+TGG 0.668208 2_3:-21036096 Msa0283640:exon
TGGGGAGGCACTAAACGTAG+TGG 0.684647 2_3:-21036692 Msa0283640:CDS
TACATCTCTGATGAACCATG+GGG 0.778050 2_3:-21036100 Msa0283640:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAATAAATAAAAAGAT+AGG + chr2_3:21037279-21037298 None:intergenic 10.0%
!!! TTTTGTTTAATATTTTTAAC+AGG - chr2_3:21037716-21037735 Msa0283640:intron 10.0%
!!! TTTGTTTAATATTTTTAACA+GGG - chr2_3:21037717-21037736 Msa0283640:intron 10.0%
!! AGAAAAATAAATAAAAAGAT+AGG + chr2_3:21037279-21037298 None:intergenic 10.0%
!!! TTTTGTTTAATATTTTTAAC+AGG - chr2_3:21037716-21037735 Msa0283640:intron 10.0%
!!! TTTGTTTAATATTTTTAACA+GGG - chr2_3:21037717-21037736 Msa0283640:intron 10.0%
!!! TCTTTTTATTTATTTTTCTC+TGG - chr2_3:21037280-21037299 Msa0283640:CDS 15.0%
!!! TTGTTTAATATTTTTAACAG+GGG - chr2_3:21037718-21037737 Msa0283640:intron 15.0%
!!! TCTTTTTATTTATTTTTCTC+TGG - chr2_3:21037280-21037299 Msa0283640:CDS 15.0%
!!! TTGTTTAATATTTTTAACAG+GGG - chr2_3:21037718-21037737 Msa0283640:intron 15.0%
!! CATATTCAATGAAAATGTAT+TGG - chr2_3:21036259-21036278 Msa0283640:intron 20.0%
!! TGTATGTATAATTTATGAGA+AGG - chr2_3:21036377-21036396 Msa0283640:intron 20.0%
!! TATTCTGTATTCACATTATA+TGG - chr2_3:21036527-21036546 Msa0283640:intron 20.0%
!! CAAAACATAATCAATTATCA+TGG + chr2_3:21036688-21036707 None:intergenic 20.0%
!! CAAGAAAACAACTAAATAAT+TGG - chr2_3:21037057-21037076 Msa0283640:CDS 20.0%
!! AATAAAAAGATAGGCATTTA+AGG + chr2_3:21037270-21037289 None:intergenic 20.0%
!! AAAAGAAACCCATAATTATA+AGG - chr2_3:21037334-21037353 Msa0283640:intron 20.0%
!! AAATTGGAATTATACATGAT+AGG - chr2_3:21037501-21037520 Msa0283640:intron 20.0%
!! AATTGGAATTATACATGATA+GGG - chr2_3:21037502-21037521 Msa0283640:intron 20.0%
!! CATATTCAATGAAAATGTAT+TGG - chr2_3:21036259-21036278 Msa0283640:intron 20.0%
!! TGTATGTATAATTTATGAGA+AGG - chr2_3:21036377-21036396 Msa0283640:intron 20.0%
!! TATTCTGTATTCACATTATA+TGG - chr2_3:21036527-21036546 Msa0283640:intron 20.0%
!! CAAAACATAATCAATTATCA+TGG + chr2_3:21036688-21036707 None:intergenic 20.0%
!! CAAGAAAACAACTAAATAAT+TGG - chr2_3:21037057-21037076 Msa0283640:CDS 20.0%
!! AATAAAAAGATAGGCATTTA+AGG + chr2_3:21037270-21037289 None:intergenic 20.0%
!! AAAAGAAACCCATAATTATA+AGG - chr2_3:21037334-21037353 Msa0283640:intron 20.0%
!! AAATTGGAATTATACATGAT+AGG - chr2_3:21037501-21037520 Msa0283640:intron 20.0%
!! AATTGGAATTATACATGATA+GGG - chr2_3:21037502-21037521 Msa0283640:intron 20.0%
! TTCTGAACTTTGTAAAGTAA+AGG - chr2_3:21036202-21036221 Msa0283640:intron 25.0%
! ATAATTTATGAGAAGGAAGA+AGG - chr2_3:21036384-21036403 Msa0283640:intron 25.0%
! AGAAAGAAAACTACATTATG+TGG + chr2_3:21036436-21036455 None:intergenic 25.0%
!! ACATAATGTAGTTTTCTTTC+TGG - chr2_3:21036435-21036454 Msa0283640:intron 25.0%
! TGATTCTAAACATATTTGTC+TGG - chr2_3:21036481-21036500 Msa0283640:intron 25.0%
!! ATTATGTTTTGCAAATGCAA+TGG - chr2_3:21036697-21036716 Msa0283640:CDS 25.0%
!!! ATTTGGAAAGAAGAAGTATT+TGG - chr2_3:21036786-21036805 Msa0283640:intron 25.0%
! GGTATCTAAGTTATATACTT+TGG - chr2_3:21036942-21036961 Msa0283640:intron 25.0%
! AGACTTCACCTTATAATTAT+GGG + chr2_3:21037345-21037364 None:intergenic 25.0%
! TAGACTTCACCTTATAATTA+TGG + chr2_3:21037346-21037365 None:intergenic 25.0%
! ATTAAACAAAATCAGACTCA+AGG + chr2_3:21037707-21037726 None:intergenic 25.0%
! TTCTGAACTTTGTAAAGTAA+AGG - chr2_3:21036202-21036221 Msa0283640:intron 25.0%
! ATAATTTATGAGAAGGAAGA+AGG - chr2_3:21036384-21036403 Msa0283640:intron 25.0%
! AGAAAGAAAACTACATTATG+TGG + chr2_3:21036436-21036455 None:intergenic 25.0%
!! ACATAATGTAGTTTTCTTTC+TGG - chr2_3:21036435-21036454 Msa0283640:intron 25.0%
! TGATTCTAAACATATTTGTC+TGG - chr2_3:21036481-21036500 Msa0283640:intron 25.0%
!! ATTATGTTTTGCAAATGCAA+TGG - chr2_3:21036697-21036716 Msa0283640:CDS 25.0%
!!! ATTTGGAAAGAAGAAGTATT+TGG - chr2_3:21036786-21036805 Msa0283640:intron 25.0%
! GGTATCTAAGTTATATACTT+TGG - chr2_3:21036942-21036961 Msa0283640:intron 25.0%
! AGACTTCACCTTATAATTAT+GGG + chr2_3:21037345-21037364 None:intergenic 25.0%
! TAGACTTCACCTTATAATTA+TGG + chr2_3:21037346-21037365 None:intergenic 25.0%
! ATTAAACAAAATCAGACTCA+AGG + chr2_3:21037707-21037726 None:intergenic 25.0%
GAACTTTGTAAAGTAAAGGA+CGG - chr2_3:21036206-21036225 Msa0283640:intron 30.0%
TTCTTCTTTCCAAATTTGCA+TGG + chr2_3:21036781-21036800 None:intergenic 30.0%
! TTCATCTGTATACTCTTTTC+CGG - chr2_3:21036906-21036925 Msa0283640:intron 30.0%
!! TTATTTTTCTCTGGATGAAG+AGG - chr2_3:21037289-21037308 Msa0283640:CDS 30.0%
ACAGTCAATAAAGCTATGAA+CGG - chr2_3:21037447-21037466 Msa0283640:intron 30.0%
! AATTCCAATTTTACCATGCA+AGG + chr2_3:21037492-21037511 None:intergenic 30.0%
TCTGACATTAATACAGGTTT+AGG + chr2_3:21037639-21037658 None:intergenic 30.0%
!! ACATATCATAGTTTTGCAAG+AGG + chr2_3:21037809-21037828 None:intergenic 30.0%
GAACTTTGTAAAGTAAAGGA+CGG - chr2_3:21036206-21036225 Msa0283640:intron 30.0%
TTCTTCTTTCCAAATTTGCA+TGG + chr2_3:21036781-21036800 None:intergenic 30.0%
! TTCATCTGTATACTCTTTTC+CGG - chr2_3:21036906-21036925 Msa0283640:intron 30.0%
!! TTATTTTTCTCTGGATGAAG+AGG - chr2_3:21037289-21037308 Msa0283640:CDS 30.0%
ACAGTCAATAAAGCTATGAA+CGG - chr2_3:21037447-21037466 Msa0283640:intron 30.0%
! AATTCCAATTTTACCATGCA+AGG + chr2_3:21037492-21037511 None:intergenic 30.0%
TCTGACATTAATACAGGTTT+AGG + chr2_3:21037639-21037658 None:intergenic 30.0%
!! ACATATCATAGTTTTGCAAG+AGG + chr2_3:21037809-21037828 None:intergenic 30.0%
! ATGTCAATTTGCTTGTACCA+TGG - chr2_3:21036305-21036324 Msa0283640:intron 35.0%
!! ATGTAGTTTTCTTTCTGGTC+AGG - chr2_3:21036440-21036459 Msa0283640:intron 35.0%
AGTAGTCACATCAGTTATGA+TGG + chr2_3:21036757-21036776 None:intergenic 35.0%
TGACTACTTCCATGCAAATT+TGG - chr2_3:21036769-21036788 Msa0283640:intron 35.0%
! AACGTTTTTACACACAGAAC+AGG + chr2_3:21036813-21036832 None:intergenic 35.0%
TAGATCAATAGCTTCTTCCT+CGG + chr2_3:21036841-21036860 None:intergenic 35.0%
ACTAAGGTGAGACTGATTAT+AGG - chr2_3:21037030-21037049 Msa0283640:CDS 35.0%
! ATTTAAGGCCGGAATAGTAT+GGG - chr2_3:21037123-21037142 Msa0283640:CDS 35.0%
ATAAAGCTATGAACGGATCA+TGG - chr2_3:21037454-21037473 Msa0283640:intron 35.0%
CATTCCTTGCATGGTAAAAT+TGG - chr2_3:21037485-21037504 Msa0283640:intron 35.0%
TGATAGGGATTAACATGTGT+CGG - chr2_3:21037517-21037536 Msa0283640:intron 35.0%
ATGTTTCCTTGGTCTGAATT+TGG - chr2_3:21037549-21037568 Msa0283640:intron 35.0%
TTTATGCCAAATTCAGACCA+AGG + chr2_3:21037558-21037577 None:intergenic 35.0%
TTGGTCTGAATTTGGCATAA+AGG - chr2_3:21037557-21037576 Msa0283640:intron 35.0%
TGGTCTGAATTTGGCATAAA+GGG - chr2_3:21037558-21037577 Msa0283640:intron 35.0%
ATTTGGCATAAAGGGATAGT+TGG - chr2_3:21037566-21037585 Msa0283640:intron 35.0%
CATAAAGGGATAGTTGGATT+GGG - chr2_3:21037572-21037591 Msa0283640:intron 35.0%
ACCTGTATTAATGTCAGATC+TGG - chr2_3:21037641-21037660 Msa0283640:intron 35.0%
!! ATCATAGTTTTGCAAGAGGT+TGG + chr2_3:21037805-21037824 None:intergenic 35.0%
! ATGTCAATTTGCTTGTACCA+TGG - chr2_3:21036305-21036324 Msa0283640:intron 35.0%
!! ATGTAGTTTTCTTTCTGGTC+AGG - chr2_3:21036440-21036459 Msa0283640:intron 35.0%
AGTAGTCACATCAGTTATGA+TGG + chr2_3:21036757-21036776 None:intergenic 35.0%
TGACTACTTCCATGCAAATT+TGG - chr2_3:21036769-21036788 Msa0283640:intron 35.0%
! AACGTTTTTACACACAGAAC+AGG + chr2_3:21036813-21036832 None:intergenic 35.0%
TAGATCAATAGCTTCTTCCT+CGG + chr2_3:21036841-21036860 None:intergenic 35.0%
ACTAAGGTGAGACTGATTAT+AGG - chr2_3:21037030-21037049 Msa0283640:CDS 35.0%
! ATTTAAGGCCGGAATAGTAT+GGG - chr2_3:21037123-21037142 Msa0283640:CDS 35.0%
ATAAAGCTATGAACGGATCA+TGG - chr2_3:21037454-21037473 Msa0283640:intron 35.0%
CATTCCTTGCATGGTAAAAT+TGG - chr2_3:21037485-21037504 Msa0283640:intron 35.0%
TGATAGGGATTAACATGTGT+CGG - chr2_3:21037517-21037536 Msa0283640:intron 35.0%
ATGTTTCCTTGGTCTGAATT+TGG - chr2_3:21037549-21037568 Msa0283640:intron 35.0%
TTTATGCCAAATTCAGACCA+AGG + chr2_3:21037558-21037577 None:intergenic 35.0%
TTGGTCTGAATTTGGCATAA+AGG - chr2_3:21037557-21037576 Msa0283640:intron 35.0%
TGGTCTGAATTTGGCATAAA+GGG - chr2_3:21037558-21037577 Msa0283640:intron 35.0%
ATTTGGCATAAAGGGATAGT+TGG - chr2_3:21037566-21037585 Msa0283640:intron 35.0%
CATAAAGGGATAGTTGGATT+GGG - chr2_3:21037572-21037591 Msa0283640:intron 35.0%
ACCTGTATTAATGTCAGATC+TGG - chr2_3:21037641-21037660 Msa0283640:intron 35.0%
!! ATCATAGTTTTGCAAGAGGT+TGG + chr2_3:21037805-21037824 None:intergenic 35.0%
CATCAAAATTGCAGATCCCT+TGG - chr2_3:21036083-21036102 Msa0283640:three_prime_UTR 40.0%
TAGGACCTGTTGTTAGTGAA+GGG - chr2_3:21036121-21036140 Msa0283640:CDS 40.0%
! AATTTGCTTGTACCATGGAC+TGG - chr2_3:21036310-21036329 Msa0283640:intron 40.0%
! AGAAAGCATAACCATACCTC+TGG + chr2_3:21036630-21036649 None:intergenic 40.0%
CAATGGCAGCATCTAAAGAA+AGG - chr2_3:21036714-21036733 Msa0283640:CDS 40.0%
GTCACATCAGTTATGATGGT+TGG + chr2_3:21036753-21036772 None:intergenic 40.0%
TGTAAAAACGTTTAGCACCG+AGG - chr2_3:21036821-21036840 Msa0283640:intron 40.0%
! TACTCTTTTCCGGTCATTTG+TGG - chr2_3:21036916-21036935 Msa0283640:intron 40.0%
! TTTTCCGGTCATTTGTGGAA+TGG - chr2_3:21036921-21036940 Msa0283640:intron 40.0%
GATACCATTCCACAAATGAC+CGG + chr2_3:21036928-21036947 None:intergenic 40.0%
AAGATGTGAGCGTGTAACTA+AGG - chr2_3:21037014-21037033 Msa0283640:intron 40.0%
AGTTTATCTTGCTCTGATGC+AGG - chr2_3:21037099-21037118 Msa0283640:CDS 40.0%
! CATTTAAGGCCGGAATAGTA+TGG - chr2_3:21037122-21037141 Msa0283640:CDS 40.0%
GCAATTGACCCATACTATTC+CGG + chr2_3:21037134-21037153 None:intergenic 40.0%
TAAGGTGAAGTCTAAGTCTG+TGG - chr2_3:21037352-21037371 Msa0283640:intron 40.0%
GCATAAAGGGATAGTTGGAT+TGG - chr2_3:21037571-21037590 Msa0283640:intron 40.0%
GCCAGATCTGACATTAATAC+AGG + chr2_3:21037645-21037664 None:intergenic 40.0%
TATTAATGTCAGATCTGGCG+CGG - chr2_3:21037646-21037665 Msa0283640:intron 40.0%
GACTCAAGGTCAAATAAGAC+AGG + chr2_3:21037693-21037712 None:intergenic 40.0%
AGTACATCTCTGATGAACCA+TGG - chr2_3:21037771-21037790 Msa0283640:CDS 40.0%
GTACATCTCTGATGAACCAT+GGG - chr2_3:21037772-21037791 Msa0283640:CDS 40.0%
TACATCTCTGATGAACCATG+GGG - chr2_3:21037773-21037792 Msa0283640:CDS 40.0%
CATCAAAATTGCAGATCCCT+TGG - chr2_3:21036083-21036102 Msa0283640:three_prime_UTR 40.0%
TAGGACCTGTTGTTAGTGAA+GGG - chr2_3:21036121-21036140 Msa0283640:CDS 40.0%
! AATTTGCTTGTACCATGGAC+TGG - chr2_3:21036310-21036329 Msa0283640:intron 40.0%
! AGAAAGCATAACCATACCTC+TGG + chr2_3:21036630-21036649 None:intergenic 40.0%
CAATGGCAGCATCTAAAGAA+AGG - chr2_3:21036714-21036733 Msa0283640:CDS 40.0%
GTCACATCAGTTATGATGGT+TGG + chr2_3:21036753-21036772 None:intergenic 40.0%
TGTAAAAACGTTTAGCACCG+AGG - chr2_3:21036821-21036840 Msa0283640:intron 40.0%
! TACTCTTTTCCGGTCATTTG+TGG - chr2_3:21036916-21036935 Msa0283640:intron 40.0%
! TTTTCCGGTCATTTGTGGAA+TGG - chr2_3:21036921-21036940 Msa0283640:intron 40.0%
GATACCATTCCACAAATGAC+CGG + chr2_3:21036928-21036947 None:intergenic 40.0%
AAGATGTGAGCGTGTAACTA+AGG - chr2_3:21037014-21037033 Msa0283640:intron 40.0%
AGTTTATCTTGCTCTGATGC+AGG - chr2_3:21037099-21037118 Msa0283640:CDS 40.0%
! CATTTAAGGCCGGAATAGTA+TGG - chr2_3:21037122-21037141 Msa0283640:CDS 40.0%
GCAATTGACCCATACTATTC+CGG + chr2_3:21037134-21037153 None:intergenic 40.0%
TAAGGTGAAGTCTAAGTCTG+TGG - chr2_3:21037352-21037371 Msa0283640:intron 40.0%
GCATAAAGGGATAGTTGGAT+TGG - chr2_3:21037571-21037590 Msa0283640:intron 40.0%
GCCAGATCTGACATTAATAC+AGG + chr2_3:21037645-21037664 None:intergenic 40.0%
TATTAATGTCAGATCTGGCG+CGG - chr2_3:21037646-21037665 Msa0283640:intron 40.0%
GACTCAAGGTCAAATAAGAC+AGG + chr2_3:21037693-21037712 None:intergenic 40.0%
AGTACATCTCTGATGAACCA+TGG - chr2_3:21037771-21037790 Msa0283640:CDS 40.0%
GTACATCTCTGATGAACCAT+GGG - chr2_3:21037772-21037791 Msa0283640:CDS 40.0%
TACATCTCTGATGAACCATG+GGG - chr2_3:21037773-21037792 Msa0283640:CDS 40.0%
ATTGCAGATCCCTTGGAAGA+AGG - chr2_3:21036090-21036109 Msa0283640:three_prime_UTR 45.0%
CTAGGACCTGTTGTTAGTGA+AGG - chr2_3:21036120-21036139 Msa0283640:CDS 45.0%
! GGAAGCTTTATACCAGTCCA+TGG + chr2_3:21036325-21036344 None:intergenic 45.0%
!! AGCTTCCTGAGAAGCACTAT+TGG - chr2_3:21036338-21036357 Msa0283640:intron 45.0%
TGTCTCGAACACTAAGAGTG+AGG - chr2_3:21036575-21036594 Msa0283640:intron 45.0%
GTCTCGAACACTAAGAGTGA+GGG - chr2_3:21036576-21036595 Msa0283640:intron 45.0%
!!! GTGCGACAATTTTGACTGGT+GGG - chr2_3:21036598-21036617 Msa0283640:intron 45.0%
CTGTGCAAGTGTGTTCAGTT+AGG - chr2_3:21036648-21036667 Msa0283640:intron 45.0%
ACTTTGGTCCTCTACAGCTA+TGG - chr2_3:21036958-21036977 Msa0283640:intron 45.0%
TGCTCTGATGCAGGCATTTA+AGG - chr2_3:21037108-21037127 Msa0283640:CDS 45.0%
! GGCACTAAACGTAGTGGTTT+TGG - chr2_3:21037187-21037206 Msa0283640:intron 45.0%
CATACCATGCTCCTAGTTCA+CGG + chr2_3:21037213-21037232 None:intergenic 45.0%
TGATCACTACACTGTCAGCA+GGG + chr2_3:21037398-21037417 None:intergenic 45.0%
ATGATCACTACACTGTCAGC+AGG + chr2_3:21037399-21037418 None:intergenic 45.0%
GGCACATTTGCATGTTTCCT+TGG - chr2_3:21037538-21037557 Msa0283640:intron 45.0%
ATTAATGTCAGATCTGGCGC+GGG - chr2_3:21037647-21037666 Msa0283640:intron 45.0%
ATTGCAGATCCCTTGGAAGA+AGG - chr2_3:21036090-21036109 Msa0283640:three_prime_UTR 45.0%
CTAGGACCTGTTGTTAGTGA+AGG - chr2_3:21036120-21036139 Msa0283640:CDS 45.0%
! GGAAGCTTTATACCAGTCCA+TGG + chr2_3:21036325-21036344 None:intergenic 45.0%
!! AGCTTCCTGAGAAGCACTAT+TGG - chr2_3:21036338-21036357 Msa0283640:intron 45.0%
TGTCTCGAACACTAAGAGTG+AGG - chr2_3:21036575-21036594 Msa0283640:intron 45.0%
GTCTCGAACACTAAGAGTGA+GGG - chr2_3:21036576-21036595 Msa0283640:intron 45.0%
!!! GTGCGACAATTTTGACTGGT+GGG - chr2_3:21036598-21036617 Msa0283640:intron 45.0%
CTGTGCAAGTGTGTTCAGTT+AGG - chr2_3:21036648-21036667 Msa0283640:intron 45.0%
ACTTTGGTCCTCTACAGCTA+TGG - chr2_3:21036958-21036977 Msa0283640:intron 45.0%
TGCTCTGATGCAGGCATTTA+AGG - chr2_3:21037108-21037127 Msa0283640:CDS 45.0%
! GGCACTAAACGTAGTGGTTT+TGG - chr2_3:21037187-21037206 Msa0283640:intron 45.0%
CATACCATGCTCCTAGTTCA+CGG + chr2_3:21037213-21037232 None:intergenic 45.0%
TGATCACTACACTGTCAGCA+GGG + chr2_3:21037398-21037417 None:intergenic 45.0%
ATGATCACTACACTGTCAGC+AGG + chr2_3:21037399-21037418 None:intergenic 45.0%
GGCACATTTGCATGTTTCCT+TGG - chr2_3:21037538-21037557 Msa0283640:intron 45.0%
ATTAATGTCAGATCTGGCGC+GGG - chr2_3:21037647-21037666 Msa0283640:intron 45.0%
ATCCCTTGGAAGAAGGTTGC+AGG - chr2_3:21036097-21036116 Msa0283640:exon 50.0%
AGCCTGCAACCTTCTTCCAA+GGG + chr2_3:21036102-21036121 None:intergenic 50.0%
TAGCCTGCAACCTTCTTCCA+AGG + chr2_3:21036103-21036122 None:intergenic 50.0%
TTGGAAGAAGGTTGCAGGCT+AGG - chr2_3:21036102-21036121 Msa0283640:exon 50.0%
ACCTGTTGTTAGTGAAGGGC+AGG - chr2_3:21036125-21036144 Msa0283640:CDS 50.0%
ACCTGCCCTTCACTAACAAC+AGG + chr2_3:21036129-21036148 None:intergenic 50.0%
!! TCCTGAGAAGCACTATTGGC+TGG - chr2_3:21036342-21036361 Msa0283640:intron 50.0%
ACCAGCCAATAGTGCTTCTC+AGG + chr2_3:21036346-21036365 None:intergenic 50.0%
!! GAGAAGCACTATTGGCTGGT+TGG - chr2_3:21036346-21036365 Msa0283640:intron 50.0%
!! GAGGGTGCGACAATTTTGAC+TGG - chr2_3:21036594-21036613 Msa0283640:intron 50.0%
!!! GGTGCGACAATTTTGACTGG+TGG - chr2_3:21036597-21036616 Msa0283640:intron 50.0%
GTCCTCTACAGCTATGGCTT+AGG - chr2_3:21036964-21036983 Msa0283640:intron 50.0%
CACCTAAGCCATAGCTGTAG+AGG + chr2_3:21036969-21036988 None:intergenic 50.0%
! CTGATGCAGGCATTTAAGGC+CGG - chr2_3:21037112-21037131 Msa0283640:CDS 50.0%
ATGCTTCACTCAAGCGCCAT+GGG - chr2_3:21037162-21037181 Msa0283640:intron 50.0%
!!! AGTGGTTTTGGCCGTGAACT+AGG - chr2_3:21037199-21037218 Msa0283640:intron 50.0%
CTATGAACGGATCATGGCAC+TGG - chr2_3:21037460-21037479 Msa0283640:intron 50.0%
TCTCTGATGAACCATGGGGA+TGG - chr2_3:21037777-21037796 Msa0283640:CDS 50.0%
ATCCCTTGGAAGAAGGTTGC+AGG - chr2_3:21036097-21036116 Msa0283640:exon 50.0%
AGCCTGCAACCTTCTTCCAA+GGG + chr2_3:21036102-21036121 None:intergenic 50.0%
TAGCCTGCAACCTTCTTCCA+AGG + chr2_3:21036103-21036122 None:intergenic 50.0%
TTGGAAGAAGGTTGCAGGCT+AGG - chr2_3:21036102-21036121 Msa0283640:exon 50.0%
ACCTGTTGTTAGTGAAGGGC+AGG - chr2_3:21036125-21036144 Msa0283640:CDS 50.0%
ACCTGCCCTTCACTAACAAC+AGG + chr2_3:21036129-21036148 None:intergenic 50.0%
!! TCCTGAGAAGCACTATTGGC+TGG - chr2_3:21036342-21036361 Msa0283640:intron 50.0%
ACCAGCCAATAGTGCTTCTC+AGG + chr2_3:21036346-21036365 None:intergenic 50.0%
!! GAGAAGCACTATTGGCTGGT+TGG - chr2_3:21036346-21036365 Msa0283640:intron 50.0%
!! GAGGGTGCGACAATTTTGAC+TGG - chr2_3:21036594-21036613 Msa0283640:intron 50.0%
!!! GGTGCGACAATTTTGACTGG+TGG - chr2_3:21036597-21036616 Msa0283640:intron 50.0%
GTCCTCTACAGCTATGGCTT+AGG - chr2_3:21036964-21036983 Msa0283640:intron 50.0%
CACCTAAGCCATAGCTGTAG+AGG + chr2_3:21036969-21036988 None:intergenic 50.0%
! CTGATGCAGGCATTTAAGGC+CGG - chr2_3:21037112-21037131 Msa0283640:CDS 50.0%
ATGCTTCACTCAAGCGCCAT+GGG - chr2_3:21037162-21037181 Msa0283640:intron 50.0%
!!! AGTGGTTTTGGCCGTGAACT+AGG - chr2_3:21037199-21037218 Msa0283640:intron 50.0%
CTATGAACGGATCATGGCAC+TGG - chr2_3:21037460-21037479 Msa0283640:intron 50.0%
TCTCTGATGAACCATGGGGA+TGG - chr2_3:21037777-21037796 Msa0283640:CDS 50.0%
CATGGCGCTTGAGTGAAGCA+TGG + chr2_3:21037163-21037182 None:intergenic 55.0%
CATGCTTCACTCAAGCGCCA+TGG - chr2_3:21037161-21037180 Msa0283640:intron 55.0%
TGCTTCACTCAAGCGCCATG+GGG - chr2_3:21037163-21037182 Msa0283640:intron 55.0%
CTACGTTTAGTGCCTCCCCA+TGG + chr2_3:21037181-21037200 None:intergenic 55.0%
!! TGGGGAGGCACTAAACGTAG+TGG - chr2_3:21037181-21037200 Msa0283640:intron 55.0%
TTGGCCGTGAACTAGGAGCA+TGG - chr2_3:21037206-21037225 Msa0283640:intron 55.0%
! GCACTGGTGCATTCCTTGCA+TGG - chr2_3:21037476-21037495 Msa0283640:intron 55.0%
!! AGAGGTTGGTACCATCCCCA+TGG + chr2_3:21037791-21037810 None:intergenic 55.0%
CATGGCGCTTGAGTGAAGCA+TGG + chr2_3:21037163-21037182 None:intergenic 55.0%
CATGCTTCACTCAAGCGCCA+TGG - chr2_3:21037161-21037180 Msa0283640:intron 55.0%
TGCTTCACTCAAGCGCCATG+GGG - chr2_3:21037163-21037182 Msa0283640:intron 55.0%
CTACGTTTAGTGCCTCCCCA+TGG + chr2_3:21037181-21037200 None:intergenic 55.0%
!! TGGGGAGGCACTAAACGTAG+TGG - chr2_3:21037181-21037200 Msa0283640:intron 55.0%
TTGGCCGTGAACTAGGAGCA+TGG - chr2_3:21037206-21037225 Msa0283640:intron 55.0%
! GCACTGGTGCATTCCTTGCA+TGG - chr2_3:21037476-21037495 Msa0283640:intron 55.0%
!! AGAGGTTGGTACCATCCCCA+TGG + chr2_3:21037791-21037810 None:intergenic 55.0%
GTGGGTCTCGACCAGAGGTA+TGG - chr2_3:21036616-21036635 Msa0283640:intron 60.0%
TTCACTCAAGCGCCATGGGG+AGG - chr2_3:21037166-21037185 Msa0283640:intron 60.0%
GTGGGTCTCGACCAGAGGTA+TGG - chr2_3:21036616-21036635 Msa0283640:intron 60.0%
TTCACTCAAGCGCCATGGGG+AGG - chr2_3:21037166-21037185 Msa0283640:intron 60.0%
! GACTGGTGGGTCTCGACCAG+AGG - chr2_3:21036611-21036630 Msa0283640:intron 65.0%
! GACTGGTGGGTCTCGACCAG+AGG - chr2_3:21036611-21036630 Msa0283640:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 21036063 21037832 21036063 ID=Msa0283640;Name=Msa0283640
chr2_3 mRNA 21036063 21037832 21036063 ID=Msa0283640-mRNA-1;Parent=Msa0283640;Name=Msa0283640-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.8|0.66|0.83|1|1|6|49|175
chr2_3 exon 21036063 21036157 21036063 ID=Msa0283640-mRNA-1:exon:8295;Parent=Msa0283640-mRNA-1
chr2_3 exon 21036668 21036774 21036668 ID=Msa0283640-mRNA-1:exon:8294;Parent=Msa0283640-mRNA-1
chr2_3 exon 21036860 21036920 21036860 ID=Msa0283640-mRNA-1:exon:8293;Parent=Msa0283640-mRNA-1
chr2_3 exon 21037021 21037172 21037021 ID=Msa0283640-mRNA-1:exon:8292;Parent=Msa0283640-mRNA-1
chr2_3 exon 21037263 21037340 21037263 ID=Msa0283640-mRNA-1:exon:8291;Parent=Msa0283640-mRNA-1
chr2_3 exon 21037749 21037832 21037749 ID=Msa0283640-mRNA-1:exon:8290;Parent=Msa0283640-mRNA-1
chr2_3 CDS 21037749 21037832 21037749 ID=Msa0283640-mRNA-1:cds;Parent=Msa0283640-mRNA-1
chr2_3 CDS 21037263 21037340 21037263 ID=Msa0283640-mRNA-1:cds;Parent=Msa0283640-mRNA-1
chr2_3 CDS 21037021 21037172 21037021 ID=Msa0283640-mRNA-1:cds;Parent=Msa0283640-mRNA-1
chr2_3 CDS 21036860 21036920 21036860 ID=Msa0283640-mRNA-1:cds;Parent=Msa0283640-mRNA-1
chr2_3 CDS 21036668 21036774 21036668 ID=Msa0283640-mRNA-1:cds;Parent=Msa0283640-mRNA-1
chr2_3 CDS 21036112 21036157 21036112 ID=Msa0283640-mRNA-1:cds;Parent=Msa0283640-mRNA-1
chr2_3 three_prime_UTR 21036063 21036111 21036063 ID=Msa0283640-mRNA-1:three_prime_utr;Parent=Msa0283640-mRNA-1
Gene Sequence

>Msa0283640

ATGGTGAAATGGATCAAAAACATCAAAATTGCAGATCCCTTGGAAGAAGGTTGCAGGCTAGGACCTGTTGTTAGTGAAGGGCAGTACGAAAAAATATTGAAGTTTGTCTCGAACACTAAGAGTGAGGGTGCGACAATTTTGACTGGTGGGTCTCGACCAGAGCATCTAAAGAAAGGATTCTTTGTTGAACCAACCATCATAACTGATGTGACTACTTCCATGCAAATTTGGAAAGAAGAAGTATTTGGACCTGTTCTGTGTGTAAAAACGTTTAGCACCGAGGAAGAAGCTATTGATCTAGCAAATGACACTATCTATGGCTTAGGTGCTGCTGTAATATCAAATGATCTAGAAAGATGTGAGCGTGTAACTAAGGCATTTAAGGCCGGAATAGTATGGGTCAATTGCTGTCAGCCATGCTTCACTCAAGCGCCATGGGGAGGCACTAAACGTAGTGGTTTTGGCCGTGAACTAGGAGCATGGGGACAATTACTTGAGCGTGAAGCAAGTGACTCAGTACATCTCTGA

Protein sequence

>Msa0283640

MVKWIKNIKIADPLEEGCRLGPVVSEGQYEKILKFVSNTKSEGATILTGGSRPEHLKKGFFVEPTIITDVTTSMQIWKEEVFGPVLCVKTFSTEEEAIDLANDTIYGLGAAVISNDLERCERVTKAFKAGIVWVNCCQPCFTQAPWGGTKRSGFGRELGAWGQLLEREASDSVHL*