Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848530 | ACJ85836.1 | 96.970 | 165 | 5 | 0 | 37 | 201 | 65 | 229 | 2.83e-111 | 329 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848530 | sp|Q93YB2|AADH2_PEA | 93.939 | 165 | 10 | 0 | 37 | 201 | 311 | 475 | 8.87e-111 | 329 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848530 | B7FM53 | 96.970 | 165 | 5 | 0 | 37 | 201 | 65 | 229 | 1.35e-111 | 329 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003700 | Msa0848530 | 0.801921 | 7.166944e-49 | -8.615850e-47 |
| Msa0016670 | Msa0848530 | 0.802697 | 4.960988e-49 | -8.615850e-47 |
| Msa0052610 | Msa0848530 | 0.802590 | 5.220311e-49 | -8.615850e-47 |
| Msa0057710 | Msa0848530 | 0.803082 | 4.129885e-49 | -8.615850e-47 |
| Msa0073670 | Msa0848530 | 0.807338 | 5.307961e-50 | -8.615850e-47 |
| Msa0091600 | Msa0848530 | 0.890261 | 1.155977e-73 | -8.615850e-47 |
| Msa0109050 | Msa0848530 | 0.803550 | 3.304513e-49 | -8.615850e-47 |
| Msa0616240 | Msa0848530 | 0.807123 | 5.895750e-50 | -8.615850e-47 |
| Msa0619510 | Msa0848530 | 0.814559 | 1.448263e-51 | -8.615850e-47 |
| Msa0659600 | Msa0848530 | 0.812184 | 4.816969e-51 | -8.615850e-47 |
| Msa0699570 | Msa0848530 | 0.811734 | 6.037656e-51 | -8.615850e-47 |
| Msa0702340 | Msa0848530 | 0.812249 | 4.661088e-51 | -8.615850e-47 |
| Msa0702590 | Msa0848530 | 0.803275 | 3.768143e-49 | -8.615850e-47 |
| Msa0702660 | Msa0848530 | 0.813024 | 3.154904e-51 | -8.615850e-47 |
| Msa0704660 | Msa0848530 | 0.810230 | 1.278435e-50 | -8.615850e-47 |
| Msa0731270 | Msa0848530 | 0.954863 | 1.130129e-112 | -8.615850e-47 |
| Msa0748920 | Msa0848530 | 0.811633 | 6.348576e-51 | -8.615850e-47 |
| Msa0771280 | Msa0848530 | 0.949153 | 2.261778e-107 | -8.615850e-47 |
| Msa0780930 | Msa0848530 | 0.824011 | 1.016740e-53 | -8.615850e-47 |
| Msa0811130 | Msa0848530 | 0.820123 | 8.100644e-53 | -8.615850e-47 |
| Msa0824640 | Msa0848530 | 0.801531 | 8.617158e-49 | -8.615850e-47 |
| Msa0125770 | Msa0848530 | 0.809919 | 1.491466e-50 | -8.615850e-47 |
| Msa0139990 | Msa0848530 | 0.803195 | 3.914222e-49 | -8.615850e-47 |
| Msa0166460 | Msa0848530 | 0.803496 | 3.390772e-49 | -8.615850e-47 |
| Msa0170410 | Msa0848530 | 0.810280 | 1.246498e-50 | -8.615850e-47 |
| Msa0207350 | Msa0848530 | 0.808656 | 2.782225e-50 | -8.615850e-47 |
| Msa0226460 | Msa0848530 | 0.846898 | 1.626506e-59 | -8.615850e-47 |
| Msa0230150 | Msa0848530 | 0.835833 | 1.333154e-56 | -8.615850e-47 |
| Msa0431770 | Msa0848530 | 0.823237 | 1.543051e-53 | -8.615850e-47 |
| Msa0241800 | Msa0848530 | 0.813604 | 2.353232e-51 | -8.615850e-47 |
| Msa0241830 | Msa0848530 | 0.815484 | 9.028650e-52 | -8.615850e-47 |
| Msa0283640 | Msa0848530 | 0.884391 | 1.995385e-71 | -8.615850e-47 |
| Msa0306710 | Msa0848530 | 0.802437 | 5.612872e-49 | -8.615850e-47 |
| Msa0322900 | Msa0848530 | 0.802956 | 4.385494e-49 | -8.615850e-47 |
| Msa0333600 | Msa0848530 | 0.884115 | 2.525225e-71 | -8.615850e-47 |
| Msa0343850 | Msa0848530 | 0.808200 | 3.480539e-50 | -8.615850e-47 |
| Msa0485240 | Msa0848530 | 0.816746 | 4.718447e-52 | -8.615850e-47 |
| Msa0515640 | Msa0848530 | 0.807254 | 5.529624e-50 | -8.615850e-47 |
| Msa0518030 | Msa0848530 | 0.821399 | 4.123124e-53 | -8.615850e-47 |
| Msa0546540 | Msa0848530 | 0.948915 | 3.647781e-107 | -8.615850e-47 |
| Msa0848530 | Msa0864010 | 0.811104 | 8.272680e-51 | -8.615850e-47 |
| Msa0848530 | Msa0865060 | 0.866189 | 3.419180e-65 | -8.615850e-47 |
| Msa0848530 | Msa0884290 | 0.922564 | 8.347301e-89 | -8.615850e-47 |
| Msa0848530 | Msa0901110 | 0.815949 | 7.112132e-52 | -8.615850e-47 |
| Msa0848530 | Msa0903780 | 0.803492 | 3.397530e-49 | -8.615850e-47 |
| Msa0848530 | Msa0943170 | 0.812413 | 4.294205e-51 | -8.615850e-47 |
| Msa0848530 | Msa0944610 | 0.803615 | 3.202977e-49 | -8.615850e-47 |
| Msa0848530 | Msa0951280 | 0.862610 | 4.485974e-64 | -8.615850e-47 |
| Msa0848530 | Msa1059960 | 0.800766 | 1.235680e-48 | -8.615850e-47 |
| Msa0848530 | Msa1079230 | 0.819150 | 1.350975e-52 | -8.615850e-47 |
| Msa0848530 | Msa1098120 | 0.804310 | 2.296912e-49 | -8.615850e-47 |
| Msa0848530 | Msa1104210 | 0.803684 | 3.099079e-49 | -8.615850e-47 |
| Msa0848530 | Msa1124110 | 0.807709 | 4.426440e-50 | -8.615850e-47 |
| Msa0848530 | Msa1127590 | 0.803185 | 3.932821e-49 | -8.615850e-47 |
| Msa0848530 | Msa1131560 | 0.834852 | 2.358914e-56 | -8.615850e-47 |
| Msa0848530 | Msa1143650 | 0.842055 | 3.265307e-58 | -8.615850e-47 |
| Msa0848530 | Msa1150500 | 0.810235 | 1.274778e-50 | -8.615850e-47 |
| Msa0848530 | Msa1157870 | 0.800658 | 1.300007e-48 | -8.615850e-47 |
| Msa0848530 | Msa1168950 | 0.824585 | 7.451731e-54 | -8.615850e-47 |
| Msa0848530 | Msa1169040 | 0.827340 | 1.651691e-54 | -8.615850e-47 |
| Msa0848530 | Msa1173300 | 0.803776 | 2.966108e-49 | -8.615850e-47 |
| Msa0848530 | Msa1182770 | 0.801482 | 8.819005e-49 | -8.615850e-47 |
| Msa0848530 | Msa1188560 | 0.801936 | 7.115700e-49 | -8.615850e-47 |
| Msa0848530 | Msa1219000 | 0.814582 | 1.431488e-51 | -8.615850e-47 |
| Msa0848530 | Msa1224840 | 0.801206 | 1.004654e-48 | -8.615850e-47 |
| Msa0848530 | Msa1231820 | 0.807155 | 5.804424e-50 | -8.615850e-47 |
| Msa0848530 | Msa1307600 | 0.804560 | 2.037171e-49 | -8.615850e-47 |
| Msa0848530 | Msa1323050 | 0.803383 | 3.579341e-49 | -8.615850e-47 |
| Msa0848530 | Msa1323690 | 0.816562 | 5.186570e-52 | -8.615850e-47 |
| Msa0848530 | Msa1323990 | 0.813717 | 2.222688e-51 | -8.615850e-47 |
| Msa0848530 | Msa1360980 | 0.802136 | 6.473813e-49 | -8.615850e-47 |
| Msa0848530 | Msa1369150 | 0.830417 | 2.970938e-55 | -8.615850e-47 |
| Msa0848530 | Msa1375560 | 0.812709 | 3.699585e-51 | -8.615850e-47 |
| Msa0848530 | Msa1418240 | 0.822884 | 1.865614e-53 | -8.615850e-47 |
| Msa0848530 | Msa1454450 | 0.812443 | 4.229286e-51 | -8.615850e-47 |
| Msa0848530 | Msa1457400 | 0.820176 | 7.875430e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848530 | MtrunA17_Chr4g0059521 | 97.576 | 165 | 4 | 0 | 37 | 201 | 311 | 475 | 1.68e-114 | 335 |
| Msa0848530 | MtrunA17_Chr3g0118121 | 79.545 | 176 | 33 | 2 | 27 | 201 | 302 | 475 | 6.40e-99 | 296 |
| Msa0848530 | MtrunA17_Chr3g0118081 | 82.099 | 162 | 29 | 0 | 40 | 201 | 344 | 505 | 8.39e-96 | 289 |
| Msa0848530 | MtrunA17_Chr6g0485301 | 42.000 | 150 | 85 | 1 | 49 | 198 | 332 | 479 | 1.54e-39 | 141 |
| Msa0848530 | MtrunA17_Chr6g0485311 | 41.558 | 154 | 88 | 1 | 45 | 198 | 326 | 477 | 4.17e-39 | 140 |
| Msa0848530 | MtrunA17_Chr8g0390631 | 42.000 | 150 | 85 | 1 | 49 | 198 | 324 | 471 | 1.46e-38 | 139 |
| Msa0848530 | MtrunA17_Chr8g0390651 | 41.333 | 150 | 86 | 1 | 49 | 198 | 333 | 480 | 1.10e-37 | 136 |
| Msa0848530 | MtrunA17_Chr8g0365221 | 41.447 | 152 | 87 | 1 | 49 | 200 | 371 | 520 | 3.17e-35 | 130 |
| Msa0848530 | MtrunA17_Chr2g0310091 | 40.123 | 162 | 95 | 1 | 40 | 201 | 360 | 519 | 1.96e-34 | 128 |
| Msa0848530 | MtrunA17_Chr3g0117861 | 42.000 | 150 | 85 | 1 | 49 | 198 | 372 | 519 | 3.45e-34 | 127 |
| Msa0848530 | MtrunA17_Chr4g0059221 | 39.333 | 150 | 89 | 1 | 49 | 198 | 374 | 521 | 1.18e-31 | 120 |
| Msa0848530 | MtrunA17_Chr2g0294411 | 34.969 | 163 | 92 | 4 | 42 | 195 | 354 | 511 | 3.69e-22 | 94.0 |
| Msa0848530 | MtrunA17_Chr2g0300801 | 35.165 | 182 | 104 | 6 | 33 | 206 | 314 | 489 | 3.41e-19 | 85.1 |
| Msa0848530 | MtrunA17_Chr2g0279751 | 31.469 | 143 | 94 | 2 | 39 | 178 | 310 | 451 | 5.00e-16 | 75.9 |
| Msa0848530 | MtrunA17_Chr4g0049641 | 32.117 | 137 | 89 | 2 | 45 | 178 | 343 | 478 | 6.55e-16 | 75.9 |
| Msa0848530 | MtrunA17_Chr4g0074171 | 32.877 | 146 | 92 | 2 | 52 | 196 | 329 | 469 | 6.69e-16 | 75.5 |
| Msa0848530 | MtrunA17_Chr1g0149961 | 30.822 | 146 | 95 | 2 | 52 | 196 | 329 | 469 | 1.59e-14 | 71.6 |
| Msa0848530 | MtrunA17_Chr8g0372381 | 27.979 | 193 | 129 | 5 | 11 | 201 | 244 | 428 | 3.86e-13 | 67.8 |
| Msa0848530 | MtrunA17_Chr3g0124811 | 27.778 | 180 | 122 | 5 | 24 | 200 | 262 | 436 | 1.88e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848530 | AT1G74920.2 | 80.682 | 176 | 31 | 2 | 27 | 201 | 297 | 470 | 2.68e-101 | 302 |
| Msa0848530 | AT1G74920.1 | 80.682 | 176 | 31 | 2 | 27 | 201 | 302 | 475 | 2.96e-101 | 302 |
| Msa0848530 | AT3G48170.1 | 79.630 | 162 | 33 | 0 | 40 | 201 | 314 | 475 | 6.05e-96 | 288 |
| Msa0848530 | AT3G24503.1 | 44.805 | 154 | 83 | 1 | 45 | 198 | 327 | 478 | 8.23e-40 | 142 |
| Msa0848530 | AT1G79440.1 | 41.139 | 158 | 91 | 1 | 44 | 201 | 355 | 510 | 2.68e-33 | 125 |
| Msa0848530 | AT1G23800.1 | 38.411 | 151 | 91 | 1 | 48 | 198 | 363 | 511 | 1.46e-32 | 123 |
| Msa0848530 | AT3G48000.1 | 40.000 | 150 | 88 | 1 | 49 | 198 | 368 | 515 | 1.97e-32 | 123 |
| Msa0848530 | AT3G66658.2 | 34.337 | 166 | 95 | 4 | 42 | 198 | 354 | 514 | 1.93e-22 | 95.1 |
| Msa0848530 | AT3G66658.1 | 34.337 | 166 | 95 | 4 | 42 | 198 | 354 | 514 | 2.00e-22 | 95.1 |
| Msa0848530 | AT1G54100.2 | 34.595 | 185 | 112 | 6 | 27 | 206 | 308 | 488 | 8.28e-18 | 81.6 |
| Msa0848530 | AT1G54100.1 | 34.595 | 185 | 112 | 6 | 27 | 206 | 308 | 488 | 8.28e-18 | 81.6 |
| Msa0848530 | AT2G14170.3 | 28.492 | 179 | 120 | 4 | 40 | 213 | 410 | 585 | 3.13e-17 | 80.1 |
| Msa0848530 | AT2G14170.2 | 31.690 | 142 | 93 | 2 | 40 | 178 | 301 | 441 | 3.78e-16 | 76.6 |
| Msa0848530 | AT2G14170.1 | 31.690 | 142 | 93 | 2 | 40 | 178 | 410 | 550 | 5.04e-16 | 76.6 |
| Msa0848530 | AT4G36250.1 | 29.480 | 173 | 114 | 5 | 31 | 200 | 262 | 429 | 1.19e-13 | 69.3 |
| Msa0848530 | AT2G24270.2 | 30.822 | 146 | 95 | 2 | 52 | 196 | 369 | 509 | 1.08e-12 | 66.6 |
| Msa0848530 | AT2G24270.4 | 30.822 | 146 | 95 | 2 | 52 | 196 | 329 | 469 | 1.31e-12 | 66.6 |
| Msa0848530 | AT2G24270.3 | 30.822 | 146 | 95 | 2 | 52 | 196 | 329 | 469 | 1.34e-12 | 66.6 |
| Msa0848530 | AT2G24270.1 | 30.822 | 146 | 95 | 2 | 52 | 196 | 329 | 469 | 1.34e-12 | 66.6 |
| Msa0848530 | AT1G44170.3 | 25.414 | 181 | 127 | 4 | 24 | 201 | 193 | 368 | 5.69e-12 | 64.3 |
| Msa0848530 | AT1G44170.1 | 25.414 | 181 | 127 | 4 | 24 | 201 | 256 | 431 | 5.86e-12 | 64.7 |
| Msa0848530 | AT1G44170.2 | 25.414 | 181 | 127 | 4 | 24 | 201 | 256 | 431 | 5.86e-12 | 64.7 |
Find 47 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCTGATGCAGGCATTTA+AGG | 0.134214 | 5_4:+33192917 | Msa0848530:intron |
| ATTTGGAAAGAAGAAGTATT+TGG | 0.232708 | 5_4:+33192595 | Msa0848530:CDS |
| TGACTACTTCCATGCAAATT+TGG | 0.235483 | 5_4:+33192578 | Msa0848530:CDS |
| GGCATTAAACGTAGTGGTTT+TGG | 0.252055 | 5_4:+33192996 | Msa0848530:CDS |
| CATTTAAGGCCGGAATAGTA+TGG | 0.290640 | 5_4:+33192931 | Msa0848530:CDS |
| TTCAATTCATGCACGGAATC+TGG | 0.312219 | 5_4:-33191354 | None:intergenic |
| ATCCCTTGGAAGAAGGTTGC+AGG | 0.381818 | 5_4:+33191906 | Msa0848530:CDS |
| CATCAAAATTTCAGATCCCT+TGG | 0.421001 | 5_4:+33191892 | Msa0848530:CDS |
| GCAATTGACCCATACTATTC+CGG | 0.433561 | 5_4:-33192940 | None:intergenic |
| ATTTCAGATCCCTTGGAAGA+AGG | 0.459280 | 5_4:+33191899 | Msa0848530:CDS |
| ATGCTTCACTCAAGCGCCAT+GGG | 0.461661 | 5_4:+33192971 | Msa0848530:CDS |
| GTCCTCTACAGCTATGGCTT+AGG | 0.463601 | 5_4:+33192773 | Msa0848530:intron |
| TTGGAAGAAGGTTGCAGGCT+AGG | 0.466614 | 5_4:+33191911 | Msa0848530:CDS |
| ACCTGTTGTTAGTGAAGGGC+AGG | 0.473564 | 5_4:+33191934 | Msa0848530:CDS |
| GGAATCTGGAATGGCGTCAA+TGG | 0.475294 | 5_4:-33191340 | None:intergenic |
| ACCTGCCCTTCACTAACAAC+AGG | 0.480135 | 5_4:-33191935 | None:intergenic |
| GTCACATCAGTTATGATGGT+TGG | 0.495328 | 5_4:-33192559 | None:intergenic |
| TTCTTCTTTCCAAATTTGCA+TGG | 0.496084 | 5_4:-33192587 | None:intergenic |
| CAATGGCAGCATCTAAAGAA+AGG | 0.502314 | 5_4:+33192523 | Msa0848530:intron |
| AAGATGTGAGCGTGTAACTA+AGG | 0.508552 | 5_4:+33192823 | Msa0848530:CDS |
| CATGCTTCACTCAAGCGCCA+TGG | 0.516509 | 5_4:+33192970 | Msa0848530:CDS |
| GTACATCTCTGATGAACCAT+GGG | 0.525895 | 5_4:+33193581 | Msa0848530:exon |
| AGTAGTCACATCAGTTATGA+TGG | 0.526637 | 5_4:-33192563 | None:intergenic |
| CATACCATTCTCCTAGTTCA+CGG | 0.538382 | 5_4:-33193019 | None:intergenic |
| TAGCCTGCAACCTTCTTCCA+AGG | 0.540093 | 5_4:-33191909 | None:intergenic |
| CTAGGACCTGTTGTTAGTGA+AGG | 0.541728 | 5_4:+33191929 | Msa0848530:CDS |
| TTGGCCGTGAACTAGGAGAA+TGG | 0.556599 | 5_4:+33193015 | Msa0848530:CDS |
| GACTGGTGGGTCTCGACCAG+AGG | 0.561492 | 5_4:+33192420 | Msa0848530:CDS |
| TTCACTCAAGCGCCATGGGG+AGG | 0.564185 | 5_4:+33192975 | Msa0848530:CDS |
| CTGATGCAGGCATTTAAGGC+CGG | 0.567654 | 5_4:+33192921 | Msa0848530:intron |
| TTCTTTGTTATTGAGCTCAG+AGG | 0.569955 | 5_4:+33189471 | Msa0848530:CDS |
| GTCTCGAACGCTAAGAGTGA+GGG | 0.574738 | 5_4:+33192385 | Msa0848530:CDS |
| TTCATGCACGGAATCTGGAA+TGG | 0.586797 | 5_4:-33191349 | None:intergenic |
| TAGGACCTGTTGTTAGTGAA+GGG | 0.592104 | 5_4:+33191930 | Msa0848530:CDS |
| TAGATCAATAGCTTCTTCCT+CGG | 0.596377 | 5_4:-33192647 | None:intergenic |
| AGCCTGCAACCTTCTTCCAA+GGG | 0.599460 | 5_4:-33191908 | None:intergenic |
| ATTTAAGGCCGGAATAGTAT+GGG | 0.604605 | 5_4:+33192932 | Msa0848530:CDS |
| GGAGGTTGGTACCATCCCCA+TGG | 0.607677 | 5_4:-33193597 | None:intergenic |
| TGTCTCGAACGCTAAGAGTG+AGG | 0.614021 | 5_4:+33192384 | Msa0848530:CDS |
| AGTACATCTCTGATGAACCA+TGG | 0.616407 | 5_4:+33193580 | Msa0848530:exon |
| ATATTGCTTCAATTCATGCA+CGG | 0.618950 | 5_4:-33191361 | None:intergenic |
| TGGGGAGGCATTAAACGTAG+TGG | 0.638861 | 5_4:+33192990 | Msa0848530:CDS |
| CTACGTTTAATGCCTCCCCA+TGG | 0.639138 | 5_4:-33192987 | None:intergenic |
| CATGGCGCTTGAGTGAAGCA+TGG | 0.643282 | 5_4:-33192969 | None:intergenic |
| TGCTTCACTCAAGCGCCATG+GGG | 0.659834 | 5_4:+33192972 | Msa0848530:CDS |
| TCTCTGATGAACCATGGGGA+TGG | 0.668208 | 5_4:+33193586 | Msa0848530:exon |
| TACATCTCTGATGAACCATG+GGG | 0.778050 | 5_4:+33193582 | Msa0848530:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTATAGTTAAATTTATG+CGG | - | chr5_4:33190022-33190041 | None:intergenic | 10.0% |
| !! | AGAAAAATAAATAAAAAGAT+AGG | - | chr5_4:33193088-33193107 | None:intergenic | 10.0% |
| !!! | TTTTGTTTAATATTTTTAAC+AGG | + | chr5_4:33193525-33193544 | Msa0848530:intron | 10.0% |
| !!! | TTTGTTTAATATTTTTAACA+GGG | + | chr5_4:33193526-33193545 | Msa0848530:intron | 10.0% |
| !! | AAATTTATATCTAAACTGTA+GGG | - | chr5_4:33190783-33190802 | None:intergenic | 15.0% |
| !! | AAAATTTATATCTAAACTGT+AGG | - | chr5_4:33190784-33190803 | None:intergenic | 15.0% |
| !!! | GACTTTAAAAAAAATGTTTA+AGG | + | chr5_4:33191006-33191025 | Msa0848530:intron | 15.0% |
| !!! | TCTTTTTATTTATTTTTCTC+TGG | + | chr5_4:33193089-33193108 | Msa0848530:intron | 15.0% |
| !!! | TTGTTTAATATTTTTAACAG+GGG | + | chr5_4:33193527-33193546 | Msa0848530:intron | 15.0% |
| !!! | TTTTTGATCTTATGTGATTT+TGG | + | chr5_4:33189562-33189581 | Msa0848530:intron | 20.0% |
| !!! | TTTTGATCTTATGTGATTTT+GGG | + | chr5_4:33189563-33189582 | Msa0848530:intron | 20.0% |
| !!! | GATTTGTTGTTTTGAATTTT+TGG | + | chr5_4:33189835-33189854 | Msa0848530:intron | 20.0% |
| !! | AAATAAGTTAACTATGATGA+TGG | + | chr5_4:33190037-33190056 | Msa0848530:intron | 20.0% |
| !! | TAAATTATACATGCATGTTA+TGG | + | chr5_4:33190171-33190190 | Msa0848530:intron | 20.0% |
| !!! | TCTTTTCTTTTTTGTGATTT+TGG | + | chr5_4:33190392-33190411 | Msa0848530:intron | 20.0% |
| !! | AATATTTATCCATTGTGATT+TGG | + | chr5_4:33190448-33190467 | Msa0848530:intron | 20.0% |
| !! | ACATAATCACACAATAATAT+AGG | - | chr5_4:33190698-33190717 | None:intergenic | 20.0% |
| !!! | GATATAAATTTTGTACGATT+TGG | + | chr5_4:33190792-33190811 | Msa0848530:intron | 20.0% |
| !!! | TCATAATTCTTTTTTATGAC+AGG | + | chr5_4:33191293-33191312 | Msa0848530:intron | 20.0% |
| !!! | AAATAATTCAACATAATGGA+TGG | + | chr5_4:33191437-33191456 | Msa0848530:intron | 20.0% |
| !! | AAAGTAAATATTCACTCAAA+GGG | - | chr5_4:33191468-33191487 | None:intergenic | 20.0% |
| !! | TAAGATACTCTTATTATTTC+AGG | + | chr5_4:33191820-33191839 | Msa0848530:intron | 20.0% |
| !!! | TAGCAACATAATTTTTGAAT+AGG | + | chr5_4:33191849-33191868 | Msa0848530:intron | 20.0% |
| !! | CATATTCAATGAAAATGTAT+TGG | + | chr5_4:33192068-33192087 | Msa0848530:intron | 20.0% |
| !! | TGTATGTATAATTTATGAGA+AGG | + | chr5_4:33192186-33192205 | Msa0848530:intron | 20.0% |
| !! | TATTCTGTATTCACATTATA+TGG | + | chr5_4:33192336-33192355 | Msa0848530:intron | 20.0% |
| !! | CAAAACATAATCAATTATCA+TGG | - | chr5_4:33192497-33192516 | None:intergenic | 20.0% |
| !! | CAAGAAAACAACTAAATAAT+TGG | + | chr5_4:33192866-33192885 | Msa0848530:intron | 20.0% |
| !! | AATAAAAAGATAGGCATTTA+AGG | - | chr5_4:33193079-33193098 | None:intergenic | 20.0% |
| !! | AAAAGAAACCCATAATTATA+AGG | + | chr5_4:33193143-33193162 | Msa0848530:intron | 20.0% |
| !! | AAATTGGAATTATACATGAT+AGG | + | chr5_4:33193310-33193329 | Msa0848530:intron | 20.0% |
| !! | AATTGGAATTATACATGATA+GGG | + | chr5_4:33193311-33193330 | Msa0848530:intron | 20.0% |
| !!! | ATATTTTCAACTTTTTCTGC+AGG | + | chr5_4:33189598-33189617 | Msa0848530:intron | 25.0% |
| !! | ATTTTCTCTGTTTGTGATTT+TGG | + | chr5_4:33189714-33189733 | Msa0848530:intron | 25.0% |
| !! | TTTTCTCTGTTTGTGATTTT+GGG | + | chr5_4:33189715-33189734 | Msa0848530:intron | 25.0% |
| !! | ATGTTGTTTGGATAAATCAT+TGG | + | chr5_4:33189902-33189921 | Msa0848530:intron | 25.0% |
| ! | TAGTGTTTGGTACAAAATTT+GGG | + | chr5_4:33189960-33189979 | Msa0848530:intron | 25.0% |
| ! | TAGTGTTTGGTACAAAATTT+GGG | + | chr5_4:33189960-33189979 | Msa0848530:intron | 25.0% |
| ! | AACAGTAGAGTTAAATTGAA+GGG | + | chr5_4:33190260-33190279 | Msa0848530:intron | 25.0% |
| ! | AGTTAAATTGAAGGGTTAAA+GGG | + | chr5_4:33190268-33190287 | Msa0848530:intron | 25.0% |
| ! | AACAAGAAATTTGCAGAAAA+AGG | + | chr5_4:33190483-33190502 | Msa0848530:intron | 25.0% |
| ! | AAAAAGGATTACTGAAAGTT+TGG | + | chr5_4:33190499-33190518 | Msa0848530:intron | 25.0% |
| ! | AAAAGGATTACTGAAAGTTT+GGG | + | chr5_4:33190500-33190519 | Msa0848530:intron | 25.0% |
| ! | TGAATTTGATTAGATAGAGA+AGG | + | chr5_4:33190642-33190661 | Msa0848530:intron | 25.0% |
| ! | TTGAGTGAGATAAATATTTG+TGG | + | chr5_4:33191079-33191098 | Msa0848530:intron | 25.0% |
| ! | GCTCAAATAATTCAACATAA+TGG | + | chr5_4:33191433-33191452 | Msa0848530:intron | 25.0% |
| ! | CAAAGTAAATATTCACTCAA+AGG | - | chr5_4:33191469-33191488 | None:intergenic | 25.0% |
| !!! | ATGGTTCTACATTTTGAATA+TGG | + | chr5_4:33191560-33191579 | Msa0848530:intron | 25.0% |
| ! | TACTTACATGTACAATAAGA+CGG | - | chr5_4:33191607-33191626 | None:intergenic | 25.0% |
| ! | GACAAAAGAAAAAATGCAAA+TGG | - | chr5_4:33191696-33191715 | None:intergenic | 25.0% |
| !! | TTTTGAATAGGATGATGAAA+TGG | + | chr5_4:33191861-33191880 | Msa0848530:intron | 25.0% |
| ! | TTCTGAACTTTGTAAAGTAA+AGG | + | chr5_4:33192011-33192030 | Msa0848530:intron | 25.0% |
| ! | ATAATTTATGAGAAGGAAGA+AGG | + | chr5_4:33192193-33192212 | Msa0848530:intron | 25.0% |
| ! | AGAAAGAAAACTACATTATG+TGG | - | chr5_4:33192245-33192264 | None:intergenic | 25.0% |
| !! | ACATAATGTAGTTTTCTTTC+TGG | + | chr5_4:33192244-33192263 | Msa0848530:intron | 25.0% |
| ! | TGATTCTAAACATATTTGTC+TGG | + | chr5_4:33192290-33192309 | Msa0848530:intron | 25.0% |
| !! | ATTATGTTTTGCAAATGCAA+TGG | + | chr5_4:33192506-33192525 | Msa0848530:intron | 25.0% |
| !!! | ATTTGGAAAGAAGAAGTATT+TGG | + | chr5_4:33192595-33192614 | Msa0848530:CDS | 25.0% |
| ! | GGTATCTAAGTTATATACTT+TGG | + | chr5_4:33192751-33192770 | Msa0848530:intron | 25.0% |
| ! | AGACTTCACCTTATAATTAT+GGG | - | chr5_4:33193154-33193173 | None:intergenic | 25.0% |
| ! | TAGACTTCACCTTATAATTA+TGG | - | chr5_4:33193155-33193174 | None:intergenic | 25.0% |
| ! | ATTAAACAAAATCAGACTCA+AGG | - | chr5_4:33193516-33193535 | None:intergenic | 25.0% |
| !! | TTTGATTGTTTTGCATGTTC+TGG | + | chr5_4:33189507-33189526 | Msa0848530:intron | 30.0% |
| ! | TTTGTTGGTTATCTAGCATA+AGG | + | chr5_4:33189621-33189640 | Msa0848530:intron | 30.0% |
| ! | AGCATAAGGTTTTCTGATTT+TGG | + | chr5_4:33189635-33189654 | Msa0848530:intron | 30.0% |
| AAGCTTAAGTAATTGTGATG+TGG | + | chr5_4:33189770-33189789 | Msa0848530:intron | 30.0% | |
| TTAAGTAATTGTGATGTGGT+TGG | + | chr5_4:33189774-33189793 | Msa0848530:intron | 30.0% | |
| AATCACAAAGAAAAGCCATA+AGG | - | chr5_4:33189819-33189838 | None:intergenic | 30.0% | |
| TGAACAAACTATATCAGTTC+TGG | - | chr5_4:33189863-33189882 | None:intergenic | 30.0% | |
| !! | TAGTTTGTTCATACGAGATT+TGG | + | chr5_4:33189872-33189891 | Msa0848530:intron | 30.0% |
| ! | AGTTTGTTCATACGAGATTT+GGG | + | chr5_4:33189873-33189892 | Msa0848530:intron | 30.0% |
| GGATAAATCATTGGTGTATA+AGG | + | chr5_4:33189911-33189930 | Msa0848530:intron | 30.0% | |
| GTCTTAGAATGAGATTATGA+TGG | + | chr5_4:33189937-33189956 | Msa0848530:intron | 30.0% | |
| GTAGTGTTTGGTACAAAATT+TGG | + | chr5_4:33189959-33189978 | Msa0848530:intron | 30.0% | |
| TGCTTAGAATGAGATTATGA+TGG | + | chr5_4:33190084-33190103 | Msa0848530:intron | 30.0% | |
| GTAGTGTTTGGTACAAAATT+TGG | + | chr5_4:33189959-33189978 | Msa0848530:intron | 30.0% | |
| !! | GCGATTTTGGTAATTGATTA+AGG | + | chr5_4:33190237-33190256 | Msa0848530:intron | 30.0% |
| GAACAGTAGAGTTAAATTGA+AGG | + | chr5_4:33190259-33190278 | Msa0848530:intron | 30.0% | |
| GAGTTAAATTGAAGGGTTAA+AGG | + | chr5_4:33190267-33190286 | Msa0848530:intron | 30.0% | |
| !! | TTATCCATTGTGATTTGGTT+TGG | + | chr5_4:33190453-33190472 | Msa0848530:intron | 30.0% |
| ! | AGAAATTGAAGTTTTGCAGA+AGG | + | chr5_4:33190552-33190571 | Msa0848530:intron | 30.0% |
| TAAGCTTAATCTGATTCAGA+AGG | + | chr5_4:33190595-33190614 | Msa0848530:intron | 30.0% | |
| !! | GATAGTTGATGAAATGTTTG+TGG | + | chr5_4:33190734-33190753 | Msa0848530:intron | 30.0% |
| TCAGAAAACACATTAGAAGT+TGG | + | chr5_4:33190828-33190847 | Msa0848530:intron | 30.0% | |
| ! | AGAAAAAGCTATACAGGTTT+TGG | + | chr5_4:33190872-33190891 | Msa0848530:intron | 30.0% |
| !!! | TGTTTTGAGAAAAGTGCTTA+TGG | + | chr5_4:33190944-33190963 | Msa0848530:intron | 30.0% |
| !!! | GTTTTGAGAAAAGTGCTTAT+GGG | + | chr5_4:33190945-33190964 | Msa0848530:intron | 30.0% |
| !!! | TTTTGAGAAAAGTGCTTATG+GGG | + | chr5_4:33190946-33190965 | Msa0848530:intron | 30.0% |
| ATAATCATAAACTACCCAAG+AGG | - | chr5_4:33191057-33191076 | None:intergenic | 30.0% | |
| ATCATCTTTGCTTATGTTGA+TGG | + | chr5_4:33191153-33191172 | Msa0848530:intron | 30.0% | |
| ATATTGCTTCAATTCATGCA+CGG | - | chr5_4:33191364-33191383 | None:intergenic | 30.0% | |
| ACTTACATGTACAATAAGAC+GGG | - | chr5_4:33191606-33191625 | None:intergenic | 30.0% | |
| ! | TTTTCTTTTGTCTGCGTATA+TGG | + | chr5_4:33191704-33191723 | Msa0848530:intron | 30.0% |
| ! | TTTCTTTTGTCTGCGTATAT+GGG | + | chr5_4:33191705-33191724 | Msa0848530:intron | 30.0% |
| TAGAACTTTGTCAGACAAAT+TGG | + | chr5_4:33191754-33191773 | Msa0848530:intron | 30.0% | |
| GAACTTTGTAAAGTAAAGGA+CGG | + | chr5_4:33192015-33192034 | Msa0848530:intron | 30.0% | |
| TTCTTCTTTCCAAATTTGCA+TGG | - | chr5_4:33192590-33192609 | None:intergenic | 30.0% | |
| ! | TTCATCTGTATACTCTTTTC+CGG | + | chr5_4:33192715-33192734 | Msa0848530:intron | 30.0% |
| !! | TTATTTTTCTCTGGATGAAG+AGG | + | chr5_4:33193098-33193117 | Msa0848530:intron | 30.0% |
| ACAGTCAATAAAGCTATGAA+CGG | + | chr5_4:33193256-33193275 | Msa0848530:intron | 30.0% | |
| ! | AATTCCAATTTTACCATGCA+AGG | - | chr5_4:33193301-33193320 | None:intergenic | 30.0% |
| TCTGACATTAATACAGGTTT+AGG | - | chr5_4:33193448-33193467 | None:intergenic | 30.0% | |
| !! | GATACATATCATAGTTTTGC+AGG | - | chr5_4:33193621-33193640 | None:intergenic | 30.0% |
| !! | TTCTTTGTTATTGAGCTCAG+AGG | + | chr5_4:33189471-33189490 | Msa0848530:CDS | 35.0% |
| !! | AACTTTTTCTGCAGGTTTGT+TGG | + | chr5_4:33189606-33189625 | Msa0848530:intron | 35.0% |
| !! | GGTTTTCTGATTTTGGTAGT+TGG | + | chr5_4:33189642-33189661 | Msa0848530:intron | 35.0% |
| ! | TTTGAGACCAAGTAACCTTA+TGG | + | chr5_4:33189801-33189820 | Msa0848530:intron | 35.0% |
| AGAAAAGCCATAAGGTTACT+TGG | - | chr5_4:33189811-33189830 | None:intergenic | 35.0% | |
| TTTGGGTGAAAGATGTTGTT+TGG | + | chr5_4:33189890-33189909 | Msa0848530:intron | 35.0% | |
| ! | GAGATTATGATGGTAGTGTT+TGG | + | chr5_4:33189947-33189966 | Msa0848530:intron | 35.0% |
| !! | GTTAACTATGATGATGGCAT+TGG | + | chr5_4:33190043-33190062 | Msa0848530:intron | 35.0% |
| ! | GAGATTATGATGGTAGTGTT+TGG | + | chr5_4:33189947-33189966 | Msa0848530:intron | 35.0% |
| ! | TTTCTCTCTTTCTGCGATTT+TGG | + | chr5_4:33190224-33190243 | Msa0848530:intron | 35.0% |
| GTAACCAGAGATTCAATTGA+AGG | + | chr5_4:33190299-33190318 | Msa0848530:intron | 35.0% | |
| AAAGCCTTCAATTGAATCTC+TGG | - | chr5_4:33190306-33190325 | None:intergenic | 35.0% | |
| ATTGCCAAACCAAATCACAA+TGG | - | chr5_4:33190460-33190479 | None:intergenic | 35.0% | |
| ! | TTTGGGTAAAAGCTGGATTT+TGG | + | chr5_4:33190517-33190536 | Msa0848530:intron | 35.0% |
| TAATCTGATTCAGAAGGTTG+TGG | + | chr5_4:33190601-33190620 | Msa0848530:intron | 35.0% | |
| TCTAAACTGTAGGGAATTGA+GGG | - | chr5_4:33190774-33190793 | None:intergenic | 35.0% | |
| ATCTAAACTGTAGGGAATTG+AGG | - | chr5_4:33190775-33190794 | None:intergenic | 35.0% | |
| ATCTGCAGAAAAAGCTATAC+AGG | + | chr5_4:33190866-33190885 | Msa0848530:intron | 35.0% | |
| ATAGAGTTAAGCTCTTTGTC+AGG | + | chr5_4:33191114-33191133 | Msa0848530:intron | 35.0% | |
| TAGATAGATGTTGAGGTGAT+TGG | - | chr5_4:33191260-33191279 | None:intergenic | 35.0% | |
| GTCACTATAGATAGATGTTG+AGG | - | chr5_4:33191267-33191286 | None:intergenic | 35.0% | |
| TCATGTATTCAGCAGAGTAA+GGG | + | chr5_4:33191397-33191416 | Msa0848530:intron | 35.0% | |
| TGAGCTAGCACAAAAGTTTA+CGG | - | chr5_4:33191652-33191671 | None:intergenic | 35.0% | |
| ! | TTGTCAGACAAATTGGTAGT+TGG | + | chr5_4:33191761-33191780 | Msa0848530:intron | 35.0% |
| ! | TGTCAGACAAATTGGTAGTT+GGG | + | chr5_4:33191762-33191781 | Msa0848530:intron | 35.0% |
| !! | ATTGGTAGTTGGGATTTTGT+CGG | + | chr5_4:33191772-33191791 | Msa0848530:intron | 35.0% |
| CATCAAAATTTCAGATCCCT+TGG | + | chr5_4:33191892-33191911 | Msa0848530:CDS | 35.0% | |
| ! | ATGTCAATTTGCTTGTACCA+TGG | + | chr5_4:33192114-33192133 | Msa0848530:intron | 35.0% |
| !! | ATGTAGTTTTCTTTCTGGTC+AGG | + | chr5_4:33192249-33192268 | Msa0848530:intron | 35.0% |
| ! | AGAAAGCATAATCATACCTC+TGG | - | chr5_4:33192439-33192458 | None:intergenic | 35.0% |
| AGTAGTCACATCAGTTATGA+TGG | - | chr5_4:33192566-33192585 | None:intergenic | 35.0% | |
| TGACTACTTCCATGCAAATT+TGG | + | chr5_4:33192578-33192597 | Msa0848530:CDS | 35.0% | |
| ! | AACGTTTTTACACACAGAAC+AGG | - | chr5_4:33192622-33192641 | None:intergenic | 35.0% |
| TAGATCAATAGCTTCTTCCT+CGG | - | chr5_4:33192650-33192669 | None:intergenic | 35.0% | |
| ACTAAGGTGAGACTGATTAT+AGG | + | chr5_4:33192839-33192858 | Msa0848530:intron | 35.0% | |
| ! | ATTTAAGGCCGGAATAGTAT+GGG | + | chr5_4:33192932-33192951 | Msa0848530:CDS | 35.0% |
| ATAAAGCTATGAACGGATCA+TGG | + | chr5_4:33193263-33193282 | Msa0848530:intron | 35.0% | |
| CATTCCTTGCATGGTAAAAT+TGG | + | chr5_4:33193294-33193313 | Msa0848530:intron | 35.0% | |
| TGATAGGGATTAACATGTGT+CGG | + | chr5_4:33193326-33193345 | Msa0848530:intron | 35.0% | |
| ATGTTTCCTTGGTCTGAATT+TGG | + | chr5_4:33193358-33193377 | Msa0848530:intron | 35.0% | |
| TTTATGCCAAATTCAGACCA+AGG | - | chr5_4:33193367-33193386 | None:intergenic | 35.0% | |
| TTGGTCTGAATTTGGCATAA+AGG | + | chr5_4:33193366-33193385 | Msa0848530:intron | 35.0% | |
| TGGTCTGAATTTGGCATAAA+GGG | + | chr5_4:33193367-33193386 | Msa0848530:intron | 35.0% | |
| ATTTGGCATAAAGGGATAGT+TGG | + | chr5_4:33193375-33193394 | Msa0848530:intron | 35.0% | |
| CATAAAGGGATAGTTGGATT+GGG | + | chr5_4:33193381-33193400 | Msa0848530:intron | 35.0% | |
| ACCTGTATTAATGTCAGATC+TGG | + | chr5_4:33193450-33193469 | Msa0848530:intron | 35.0% | |
| !! | ACATATCATAGTTTTGCAGG+AGG | - | chr5_4:33193618-33193637 | None:intergenic | 35.0% |
| !!! | TGTGATTTTGGTTGTTCTGC+TGG | + | chr5_4:33190404-33190423 | Msa0848530:intron | 40.0% |
| CTGAAAGTTTGGGTAAAAGC+TGG | + | chr5_4:33190510-33190529 | Msa0848530:intron | 40.0% | |
| AGAAGGTAGAAACTATGAGC+TGG | + | chr5_4:33190569-33190588 | Msa0848530:intron | 40.0% | |
| TTCAATTCATGCACGGAATC+TGG | - | chr5_4:33191357-33191376 | None:intergenic | 40.0% | |
| CTCATGTATTCAGCAGAGTA+AGG | + | chr5_4:33191396-33191415 | Msa0848530:intron | 40.0% | |
| GTCAGAGTTGCTTGAAACTA+TGG | + | chr5_4:33191541-33191560 | Msa0848530:intron | 40.0% | |
| CAAAAGTTTACGGAAGGAGT+GGG | - | chr5_4:33191642-33191661 | None:intergenic | 40.0% | |
| ACAAAAGTTTACGGAAGGAG+TGG | - | chr5_4:33191643-33191662 | None:intergenic | 40.0% | |
| CTAGCACAAAAGTTTACGGA+AGG | - | chr5_4:33191648-33191667 | None:intergenic | 40.0% | |
| ATTTCAGATCCCTTGGAAGA+AGG | + | chr5_4:33191899-33191918 | Msa0848530:CDS | 40.0% | |
| TAGGACCTGTTGTTAGTGAA+GGG | + | chr5_4:33191930-33191949 | Msa0848530:CDS | 40.0% | |
| ! | AATTTGCTTGTACCATGGAC+TGG | + | chr5_4:33192119-33192138 | Msa0848530:intron | 40.0% |
| CAATGGCAGCATCTAAAGAA+AGG | + | chr5_4:33192523-33192542 | Msa0848530:intron | 40.0% | |
| GTCACATCAGTTATGATGGT+TGG | - | chr5_4:33192562-33192581 | None:intergenic | 40.0% | |
| TGTAAAAACGTTTAGCACCG+AGG | + | chr5_4:33192630-33192649 | Msa0848530:CDS | 40.0% | |
| ! | TACTCTTTTCCGGTCATTTG+TGG | + | chr5_4:33192725-33192744 | Msa0848530:intron | 40.0% |
| ! | TTTTCCGGTCATTTGTGGAA+TGG | + | chr5_4:33192730-33192749 | Msa0848530:intron | 40.0% |
| GATACCATTCCACAAATGAC+CGG | - | chr5_4:33192737-33192756 | None:intergenic | 40.0% | |
| AAGATGTGAGCGTGTAACTA+AGG | + | chr5_4:33192823-33192842 | Msa0848530:CDS | 40.0% | |
| AGTTTATCTTGCTCTGATGC+AGG | + | chr5_4:33192908-33192927 | Msa0848530:intron | 40.0% | |
| ! | CATTTAAGGCCGGAATAGTA+TGG | + | chr5_4:33192931-33192950 | Msa0848530:CDS | 40.0% |
| GCAATTGACCCATACTATTC+CGG | - | chr5_4:33192943-33192962 | None:intergenic | 40.0% | |
| ! | GGCATTAAACGTAGTGGTTT+TGG | + | chr5_4:33192996-33193015 | Msa0848530:CDS | 40.0% |
| CATACCATTCTCCTAGTTCA+CGG | - | chr5_4:33193022-33193041 | None:intergenic | 40.0% | |
| TAAGGTGAAGTCTAAGTCTG+TGG | + | chr5_4:33193161-33193180 | Msa0848530:intron | 40.0% | |
| GCATAAAGGGATAGTTGGAT+TGG | + | chr5_4:33193380-33193399 | Msa0848530:intron | 40.0% | |
| GCCAGATCTGACATTAATAC+AGG | - | chr5_4:33193454-33193473 | None:intergenic | 40.0% | |
| TATTAATGTCAGATCTGGCG+TGG | + | chr5_4:33193455-33193474 | Msa0848530:intron | 40.0% | |
| ATTAATGTCAGATCTGGCGT+GGG | + | chr5_4:33193456-33193475 | Msa0848530:intron | 40.0% | |
| GACTCAAGGTCAAATAAGAC+AGG | - | chr5_4:33193502-33193521 | None:intergenic | 40.0% | |
| AGTACATCTCTGATGAACCA+TGG | + | chr5_4:33193580-33193599 | Msa0848530:exon | 40.0% | |
| GTACATCTCTGATGAACCAT+GGG | + | chr5_4:33193581-33193600 | Msa0848530:exon | 40.0% | |
| TACATCTCTGATGAACCATG+GGG | + | chr5_4:33193582-33193601 | Msa0848530:exon | 40.0% | |
| !! | ATCATAGTTTTGCAGGAGGT+TGG | - | chr5_4:33193614-33193633 | None:intergenic | 40.0% |
| GAGGTGCGTTCTACAACTAA+AGG | - | chr5_4:33191038-33191057 | None:intergenic | 45.0% | |
| TAGTTGTAGAACGCACCTCT+TGG | + | chr5_4:33191039-33191058 | Msa0848530:intron | 45.0% | |
| AGTTGTAGAACGCACCTCTT+GGG | + | chr5_4:33191040-33191059 | Msa0848530:intron | 45.0% | |
| TTCATGCACGGAATCTGGAA+TGG | - | chr5_4:33191352-33191371 | None:intergenic | 45.0% | |
| CTAGGACCTGTTGTTAGTGA+AGG | + | chr5_4:33191929-33191948 | Msa0848530:CDS | 45.0% | |
| ! | GGAAGCTTTATACCAGTCCA+TGG | - | chr5_4:33192134-33192153 | None:intergenic | 45.0% |
| !! | AGCTTCCTGAGAAGCACTAT+TGG | + | chr5_4:33192147-33192166 | Msa0848530:intron | 45.0% |
| !!! | GTGCGACAATTTTGACTGGT+GGG | + | chr5_4:33192407-33192426 | Msa0848530:CDS | 45.0% |
| CTGTGCAAGTGTGTTCAGTT+AGG | + | chr5_4:33192457-33192476 | Msa0848530:intron | 45.0% | |
| ACTTTGGTCCTCTACAGCTA+TGG | + | chr5_4:33192767-33192786 | Msa0848530:intron | 45.0% | |
| TGCTCTGATGCAGGCATTTA+AGG | + | chr5_4:33192917-33192936 | Msa0848530:intron | 45.0% | |
| TGATCACTACACTGTCAGCA+GGG | - | chr5_4:33193207-33193226 | None:intergenic | 45.0% | |
| ATGATCACTACACTGTCAGC+AGG | - | chr5_4:33193208-33193227 | None:intergenic | 45.0% | |
| GGCACATTTGCATGTTTCCT+TGG | + | chr5_4:33193347-33193366 | Msa0848530:intron | 45.0% | |
| GGTTGTTCTGCTGGAAGAGT+AGG | + | chr5_4:33190413-33190432 | Msa0848530:intron | 50.0% | |
| GTTCTGCTGGAAGAGTAGGT+AGG | + | chr5_4:33190417-33190436 | Msa0848530:intron | 50.0% | |
| AAGTGCTTATGGGGCATAGC+AGG | + | chr5_4:33190955-33190974 | Msa0848530:intron | 50.0% | |
| GGCATAGCAGGAGCTGAAAT+GGG | + | chr5_4:33190967-33190986 | Msa0848530:intron | 50.0% | |
| ! | GGAATCTGGAATGGCGTCAA+TGG | - | chr5_4:33191343-33191362 | None:intergenic | 50.0% |
| ATCCCTTGGAAGAAGGTTGC+AGG | + | chr5_4:33191906-33191925 | Msa0848530:CDS | 50.0% | |
| AGCCTGCAACCTTCTTCCAA+GGG | - | chr5_4:33191911-33191930 | None:intergenic | 50.0% | |
| TAGCCTGCAACCTTCTTCCA+AGG | - | chr5_4:33191912-33191931 | None:intergenic | 50.0% | |
| TTGGAAGAAGGTTGCAGGCT+AGG | + | chr5_4:33191911-33191930 | Msa0848530:CDS | 50.0% | |
| ACCTGTTGTTAGTGAAGGGC+AGG | + | chr5_4:33191934-33191953 | Msa0848530:CDS | 50.0% | |
| ACCTGCCCTTCACTAACAAC+AGG | - | chr5_4:33191938-33191957 | None:intergenic | 50.0% | |
| !! | TCCTGAGAAGCACTATTGGC+TGG | + | chr5_4:33192151-33192170 | Msa0848530:intron | 50.0% |
| ACCAGCCAATAGTGCTTCTC+AGG | - | chr5_4:33192155-33192174 | None:intergenic | 50.0% | |
| !! | GAGAAGCACTATTGGCTGGT+TGG | + | chr5_4:33192155-33192174 | Msa0848530:intron | 50.0% |
| TGTCTCGAACGCTAAGAGTG+AGG | + | chr5_4:33192384-33192403 | Msa0848530:CDS | 50.0% | |
| GTCTCGAACGCTAAGAGTGA+GGG | + | chr5_4:33192385-33192404 | Msa0848530:CDS | 50.0% | |
| !! | GAGGGTGCGACAATTTTGAC+TGG | + | chr5_4:33192403-33192422 | Msa0848530:CDS | 50.0% |
| !!! | GGTGCGACAATTTTGACTGG+TGG | + | chr5_4:33192406-33192425 | Msa0848530:CDS | 50.0% |
| GTCCTCTACAGCTATGGCTT+AGG | + | chr5_4:33192773-33192792 | Msa0848530:intron | 50.0% | |
| CACCTAAGCCATAGCTGTAG+AGG | - | chr5_4:33192778-33192797 | None:intergenic | 50.0% | |
| ! | CTGATGCAGGCATTTAAGGC+CGG | + | chr5_4:33192921-33192940 | Msa0848530:intron | 50.0% |
| ATGCTTCACTCAAGCGCCAT+GGG | + | chr5_4:33192971-33192990 | Msa0848530:CDS | 50.0% | |
| CTACGTTTAATGCCTCCCCA+TGG | - | chr5_4:33192990-33193009 | None:intergenic | 50.0% | |
| !! | TGGGGAGGCATTAAACGTAG+TGG | + | chr5_4:33192990-33193009 | Msa0848530:CDS | 50.0% |
| !!! | AGTGGTTTTGGCCGTGAACT+AGG | + | chr5_4:33193008-33193027 | Msa0848530:CDS | 50.0% |
| TTGGCCGTGAACTAGGAGAA+TGG | + | chr5_4:33193015-33193034 | Msa0848530:CDS | 50.0% | |
| CTATGAACGGATCATGGCAC+TGG | + | chr5_4:33193269-33193288 | Msa0848530:intron | 50.0% | |
| TCTCTGATGAACCATGGGGA+TGG | + | chr5_4:33193586-33193605 | Msa0848530:exon | 50.0% | |
| GGGCATAGCAGGAGCTGAAA+TGG | + | chr5_4:33190966-33190985 | Msa0848530:intron | 55.0% | |
| CATGGCGCTTGAGTGAAGCA+TGG | - | chr5_4:33192972-33192991 | None:intergenic | 55.0% | |
| CATGCTTCACTCAAGCGCCA+TGG | + | chr5_4:33192970-33192989 | Msa0848530:CDS | 55.0% | |
| TGCTTCACTCAAGCGCCATG+GGG | + | chr5_4:33192972-33192991 | Msa0848530:CDS | 55.0% | |
| ! | GCACTGGTGCATTCCTTGCA+TGG | + | chr5_4:33193285-33193304 | Msa0848530:intron | 55.0% |
| TTCACTCAAGCGCCATGGGG+AGG | + | chr5_4:33192975-33192994 | Msa0848530:CDS | 60.0% | |
| !! | GGAGGTTGGTACCATCCCCA+TGG | - | chr5_4:33193600-33193619 | None:intergenic | 60.0% |
| ! | GACTGGTGGGTCTCGACCAG+AGG | + | chr5_4:33192420-33192439 | Msa0848530:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 33189471 | 33193641 | 33189471 | ID=Msa0848530;Name=Msa0848530 |
| chr5_4 | mRNA | 33189471 | 33193641 | 33189471 | ID=Msa0848530-mRNA-1;Parent=Msa0848530;Name=Msa0848530-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.5|0.44|0.55|0.5|0.66|9|49|214 |
| chr5_4 | exon | 33189471 | 33189492 | 33189471 | ID=Msa0848530-mRNA-1:exon:11564;Parent=Msa0848530-mRNA-1 |
| chr5_4 | exon | 33189620 | 33189627 | 33189620 | ID=Msa0848530-mRNA-1:exon:11565;Parent=Msa0848530-mRNA-1 |
| chr5_4 | exon | 33191315 | 33191400 | 33191315 | ID=Msa0848530-mRNA-1:exon:11566;Parent=Msa0848530-mRNA-1 |
| chr5_4 | exon | 33191871 | 33191955 | 33191871 | ID=Msa0848530-mRNA-1:exon:11567;Parent=Msa0848530-mRNA-1 |
| chr5_4 | exon | 33192364 | 33192441 | 33192364 | ID=Msa0848530-mRNA-1:exon:11568;Parent=Msa0848530-mRNA-1 |
| chr5_4 | exon | 33192532 | 33192683 | 33192532 | ID=Msa0848530-mRNA-1:exon:11569;Parent=Msa0848530-mRNA-1 |
| chr5_4 | exon | 33192784 | 33192844 | 33192784 | ID=Msa0848530-mRNA-1:exon:11570;Parent=Msa0848530-mRNA-1 |
| chr5_4 | exon | 33192930 | 33193036 | 33192930 | ID=Msa0848530-mRNA-1:exon:11571;Parent=Msa0848530-mRNA-1 |
| chr5_4 | exon | 33193547 | 33193641 | 33193547 | ID=Msa0848530-mRNA-1:exon:11572;Parent=Msa0848530-mRNA-1 |
| chr5_4 | CDS | 33189471 | 33189492 | 33189471 | ID=Msa0848530-mRNA-1:cds;Parent=Msa0848530-mRNA-1 |
| chr5_4 | CDS | 33189620 | 33189627 | 33189620 | ID=Msa0848530-mRNA-1:cds;Parent=Msa0848530-mRNA-1 |
| chr5_4 | CDS | 33191315 | 33191400 | 33191315 | ID=Msa0848530-mRNA-1:cds;Parent=Msa0848530-mRNA-1 |
| chr5_4 | CDS | 33191871 | 33191955 | 33191871 | ID=Msa0848530-mRNA-1:cds;Parent=Msa0848530-mRNA-1 |
| chr5_4 | CDS | 33192364 | 33192441 | 33192364 | ID=Msa0848530-mRNA-1:cds;Parent=Msa0848530-mRNA-1 |
| chr5_4 | CDS | 33192532 | 33192683 | 33192532 | ID=Msa0848530-mRNA-1:cds;Parent=Msa0848530-mRNA-1 |
| chr5_4 | CDS | 33192784 | 33192844 | 33192784 | ID=Msa0848530-mRNA-1:cds;Parent=Msa0848530-mRNA-1 |
| chr5_4 | CDS | 33192930 | 33193036 | 33192930 | ID=Msa0848530-mRNA-1:cds;Parent=Msa0848530-mRNA-1 |
| chr5_4 | CDS | 33193547 | 33193592 | 33193547 | ID=Msa0848530-mRNA-1:cds;Parent=Msa0848530-mRNA-1 |
| chr5_4 | three_prime_UTR | 33193593 | 33193641 | 33193593 | ID=Msa0848530-mRNA-1:three_prime_utr;Parent=Msa0848530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
