Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0884290 | ACJ85836.1 | 92.746 | 193 | 4 | 1 | 37 | 219 | 65 | 257 | 2.99e-123 | 359 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0884290 | sp|Q93YB2|AADH2_PEA | 89.119 | 193 | 11 | 1 | 37 | 219 | 311 | 503 | 1.44e-120 | 354 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0884290 | B7FM53 | 92.746 | 193 | 4 | 1 | 37 | 219 | 65 | 257 | 1.43e-123 | 359 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0884290 | 0.804563 | 2.033873e-49 | -8.615850e-47 |
| Msa0041690 | Msa0884290 | 0.800423 | 1.451291e-48 | -8.615850e-47 |
| Msa0048180 | Msa0884290 | 0.804457 | 2.140102e-49 | -8.615850e-47 |
| Msa0091600 | Msa0884290 | 0.855460 | 6.215341e-62 | -8.615850e-47 |
| Msa0093850 | Msa0884290 | 0.810494 | 1.121142e-50 | -8.615850e-47 |
| Msa0103240 | Msa0884290 | 0.800259 | 1.567347e-48 | -8.615850e-47 |
| Msa0607520 | Msa0884290 | 0.800586 | 1.344529e-48 | -8.615850e-47 |
| Msa0615680 | Msa0884290 | 0.805423 | 1.344725e-49 | -8.615850e-47 |
| Msa0619420 | Msa0884290 | 0.810019 | 1.419298e-50 | -8.615850e-47 |
| Msa0628420 | Msa0884290 | 0.803869 | 2.836943e-49 | -8.615850e-47 |
| Msa0638480 | Msa0884290 | 0.810020 | 1.418225e-50 | -8.615850e-47 |
| Msa0642970 | Msa0884290 | 0.826575 | 2.515666e-54 | -8.615850e-47 |
| Msa0644030 | Msa0884290 | 0.821867 | 3.213155e-53 | -8.615850e-47 |
| Msa0644800 | Msa0884290 | 0.800555 | 1.364150e-48 | -8.615850e-47 |
| Msa0659550 | Msa0884290 | 0.800299 | 1.538229e-48 | -8.615850e-47 |
| Msa0666230 | Msa0884290 | 0.810280 | 1.246534e-50 | -8.615850e-47 |
| Msa0682680 | Msa0884290 | 0.812508 | 4.092008e-51 | -8.615850e-47 |
| Msa0704660 | Msa0884290 | 0.811574 | 6.539519e-51 | -8.615850e-47 |
| Msa0731270 | Msa0884290 | 0.948697 | 5.632152e-107 | -8.615850e-47 |
| Msa0748920 | Msa0884290 | 0.827001 | 1.991012e-54 | -8.615850e-47 |
| Msa0751010 | Msa0884290 | 0.806081 | 9.782188e-50 | -8.615850e-47 |
| Msa0771280 | Msa0884290 | 0.940774 | 1.310916e-100 | -8.615850e-47 |
| Msa0780930 | Msa0884290 | 0.821582 | 3.740336e-53 | -8.615850e-47 |
| Msa0794050 | Msa0884290 | 0.825467 | 4.613634e-54 | -8.615850e-47 |
| Msa0808800 | Msa0884290 | 0.811341 | 7.349720e-51 | -8.615850e-47 |
| Msa0818770 | Msa0884290 | 0.808055 | 3.737485e-50 | -8.615850e-47 |
| Msa0130240 | Msa0884290 | 0.804836 | 1.783921e-49 | -8.615850e-47 |
| Msa0136120 | Msa0884290 | 0.815739 | 7.924052e-52 | -8.615850e-47 |
| Msa0138360 | Msa0884290 | 0.811021 | 8.620379e-51 | -8.615850e-47 |
| Msa0147980 | Msa0884290 | 0.818461 | 1.936378e-52 | -8.615850e-47 |
| Msa0166460 | Msa0884290 | 0.817510 | 3.177367e-52 | -8.615850e-47 |
| Msa0188350 | Msa0884290 | 0.817886 | 2.613097e-52 | -8.615850e-47 |
| Msa0204960 | Msa0884290 | 0.804646 | 1.955262e-49 | -8.615850e-47 |
| Msa0206690 | Msa0884290 | 0.818025 | 2.431192e-52 | -8.615850e-47 |
| Msa0207350 | Msa0884290 | 0.814036 | 1.890366e-51 | -8.615850e-47 |
| Msa0207670 | Msa0884290 | 0.805774 | 1.134821e-49 | -8.615850e-47 |
| Msa0209500 | Msa0884290 | 0.805997 | 1.018506e-49 | -8.615850e-47 |
| Msa0214550 | Msa0884290 | 0.807879 | 4.074991e-50 | -8.615850e-47 |
| Msa0226330 | Msa0884290 | 0.805587 | 1.242293e-49 | -8.615850e-47 |
| Msa0226460 | Msa0884290 | 0.843270 | 1.553219e-58 | -8.615850e-47 |
| Msa0230150 | Msa0884290 | 0.848721 | 5.116058e-60 | -8.615850e-47 |
| Msa0376280 | Msa0884290 | 0.807388 | 5.178290e-50 | -8.615850e-47 |
| Msa0382370 | Msa0884290 | 0.805568 | 1.253495e-49 | -8.615850e-47 |
| Msa0384670 | Msa0884290 | 0.802505 | 5.435397e-49 | -8.615850e-47 |
| Msa0403770 | Msa0884290 | 0.802757 | 4.821185e-49 | -8.615850e-47 |
| Msa0423750 | Msa0884290 | 0.821212 | 4.552759e-53 | -8.615850e-47 |
| Msa0431770 | Msa0884290 | 0.817760 | 2.790377e-52 | -8.615850e-47 |
| Msa0432160 | Msa0884290 | 0.806650 | 7.420550e-50 | -8.615850e-47 |
| Msa0470530 | Msa0884290 | 0.816161 | 6.376353e-52 | -8.615850e-47 |
| Msa0476680 | Msa0884290 | 0.804368 | 2.234153e-49 | -8.615850e-47 |
| Msa0478580 | Msa0884290 | 0.803258 | 3.798695e-49 | -8.615850e-47 |
| Msa0479200 | Msa0884290 | 0.807904 | 4.025423e-50 | -8.615850e-47 |
| Msa0241830 | Msa0884290 | 0.851848 | 6.792994e-61 | -8.615850e-47 |
| Msa0244980 | Msa0884290 | 0.805114 | 1.560775e-49 | -8.615850e-47 |
| Msa0249580 | Msa0884290 | 0.821099 | 4.833382e-53 | -8.615850e-47 |
| Msa0257490 | Msa0884290 | 0.825210 | 5.308532e-54 | -8.615850e-47 |
| Msa0279850 | Msa0884290 | 0.830668 | 2.580044e-55 | -8.615850e-47 |
| Msa0281530 | Msa0884290 | 0.818432 | 1.965937e-52 | -8.615850e-47 |
| Msa0283640 | Msa0884290 | 0.889076 | 3.347839e-73 | -8.615850e-47 |
| Msa0296250 | Msa0884290 | 0.807777 | 4.282029e-50 | -8.615850e-47 |
| Msa0296790 | Msa0884290 | 0.817474 | 3.236161e-52 | -8.615850e-47 |
| Msa0296820 | Msa0884290 | 0.801693 | 7.982713e-49 | -8.615850e-47 |
| Msa0305780 | Msa0884290 | 0.802910 | 4.483429e-49 | -8.615850e-47 |
| Msa0317970 | Msa0884290 | 0.817068 | 3.994642e-52 | -8.615850e-47 |
| Msa0320590 | Msa0884290 | 0.820380 | 7.072166e-53 | -8.615850e-47 |
| Msa0322900 | Msa0884290 | 0.845754 | 3.335038e-59 | -8.615850e-47 |
| Msa0333600 | Msa0884290 | 0.846564 | 2.006093e-59 | -8.615850e-47 |
| Msa0341690 | Msa0884290 | 0.820144 | 8.010320e-53 | -8.615850e-47 |
| Msa0343850 | Msa0884290 | 0.823496 | 1.342798e-53 | -8.615850e-47 |
| Msa0485240 | Msa0884290 | 0.834826 | 2.394534e-56 | -8.615850e-47 |
| Msa0506400 | Msa0884290 | 0.807491 | 4.925528e-50 | -8.615850e-47 |
| Msa0511770 | Msa0884290 | 0.815949 | 7.111864e-52 | -8.615850e-47 |
| Msa0518030 | Msa0884290 | 0.856093 | 4.060908e-62 | -8.615850e-47 |
| Msa0521010 | Msa0884290 | 0.800599 | 1.336585e-48 | -8.615850e-47 |
| Msa0527020 | Msa0884290 | 0.809383 | 1.944365e-50 | -8.615850e-47 |
| Msa0527190 | Msa0884290 | 0.807887 | 4.057902e-50 | -8.615850e-47 |
| Msa0531250 | Msa0884290 | 0.806926 | 6.486668e-50 | -8.615850e-47 |
| Msa0546540 | Msa0884290 | 0.943434 | 1.212685e-102 | -8.615850e-47 |
| Msa0547160 | Msa0884290 | 0.812915 | 3.334130e-51 | -8.615850e-47 |
| Msa0547990 | Msa0884290 | 0.807617 | 4.631327e-50 | -8.615850e-47 |
| Msa0556010 | Msa0884290 | 0.805789 | 1.126537e-49 | -8.615850e-47 |
| Msa0848530 | Msa0884290 | 0.922564 | 8.347301e-89 | -8.615850e-47 |
| Msa0865060 | Msa0884290 | 0.801909 | 7.208462e-49 | -8.615850e-47 |
| Msa0884290 | Msa0901110 | 0.827453 | 1.551242e-54 | -8.615850e-47 |
| Msa0884290 | Msa0903780 | 0.820348 | 7.192416e-53 | -8.615850e-47 |
| Msa0884290 | Msa0943170 | 0.814716 | 1.337019e-51 | -8.615850e-47 |
| Msa0884290 | Msa0944200 | 0.821091 | 4.855130e-53 | -8.615850e-47 |
| Msa0884290 | Msa0944610 | 0.821354 | 4.221661e-53 | -8.615850e-47 |
| Msa0884290 | Msa0951280 | 0.855718 | 5.227652e-62 | -8.615850e-47 |
| Msa0884290 | Msa1039390 | 0.801869 | 7.345954e-49 | -8.615850e-47 |
| Msa0884290 | Msa1079230 | 0.815330 | 9.768774e-52 | -8.615850e-47 |
| Msa0884290 | Msa1089450 | 0.811015 | 8.647563e-51 | -8.615850e-47 |
| Msa0884290 | Msa1127590 | 0.819095 | 1.390256e-52 | -8.615850e-47 |
| Msa0884290 | Msa1131560 | 0.828658 | 7.953721e-55 | -8.615850e-47 |
| Msa0884290 | Msa1143650 | 0.812939 | 3.294025e-51 | -8.615850e-47 |
| Msa0884290 | Msa1144880 | 0.801396 | 9.184585e-49 | -8.615850e-47 |
| Msa0884290 | Msa1156160 | 0.800306 | 1.533413e-48 | -8.615850e-47 |
| Msa0884290 | Msa1165780 | 0.805936 | 1.049472e-49 | -8.615850e-47 |
| Msa0884290 | Msa1169040 | 0.803827 | 2.894284e-49 | -8.615850e-47 |
| Msa0884290 | Msa1169720 | 0.800134 | 1.661834e-48 | -8.615850e-47 |
| Msa0884290 | Msa1173300 | 0.832297 | 1.024171e-55 | -8.615850e-47 |
| Msa0884290 | Msa1188560 | 0.827725 | 1.334680e-54 | -8.615850e-47 |
| Msa0884290 | Msa1201810 | 0.813472 | 2.515752e-51 | -8.615850e-47 |
| Msa0884290 | Msa1202580 | 0.807432 | 5.070166e-50 | -8.615850e-47 |
| Msa0884290 | Msa1206650 | 0.807464 | 4.990253e-50 | -8.615850e-47 |
| Msa0884290 | Msa1219000 | 0.816110 | 6.546533e-52 | -8.615850e-47 |
| Msa0884290 | Msa1231820 | 0.802264 | 6.092132e-49 | -8.615850e-47 |
| Msa0884290 | Msa1243870 | 0.804247 | 2.367026e-49 | -8.615850e-47 |
| Msa0884290 | Msa1256270 | -0.804242 | 2.373580e-49 | -8.615850e-47 |
| Msa0884290 | Msa1262890 | 0.819461 | 1.147389e-52 | -8.615850e-47 |
| Msa0884290 | Msa1270420 | 0.802713 | 4.923487e-49 | -8.615850e-47 |
| Msa0884290 | Msa1275110 | 0.812639 | 3.831350e-51 | -8.615850e-47 |
| Msa0884290 | Msa1297530 | 0.803993 | 2.673874e-49 | -8.615850e-47 |
| Msa0884290 | Msa1303580 | 0.806448 | 8.185661e-50 | -8.615850e-47 |
| Msa0884290 | Msa1307600 | 0.819986 | 8.707665e-53 | -8.615850e-47 |
| Msa0884290 | Msa1323050 | 0.802621 | 5.142531e-49 | -8.615850e-47 |
| Msa0884290 | Msa1323690 | 0.826936 | 2.062774e-54 | -8.615850e-47 |
| Msa0884290 | Msa1323990 | 0.800531 | 1.379531e-48 | -8.615850e-47 |
| Msa0884290 | Msa1344310 | 0.804415 | 2.184642e-49 | -8.615850e-47 |
| Msa0884290 | Msa1358480 | 0.803502 | 3.381306e-49 | -8.615850e-47 |
| Msa0884290 | Msa1360980 | 0.838941 | 2.132039e-57 | -8.615850e-47 |
| Msa0884290 | Msa1369150 | 0.815481 | 9.042710e-52 | -8.615850e-47 |
| Msa0884290 | Msa1375560 | 0.812618 | 3.871398e-51 | -8.615850e-47 |
| Msa0884290 | Msa1409950 | 0.806625 | 7.511254e-50 | -8.615850e-47 |
| Msa0884290 | Msa1410420 | 0.802596 | 5.205196e-49 | -8.615850e-47 |
| Msa0884290 | Msa1411950 | 0.809681 | 1.678051e-50 | -8.615850e-47 |
| Msa0884290 | Msa1418240 | 0.835785 | 1.370689e-56 | -8.615850e-47 |
| Msa0884290 | Msa1434740 | 0.812169 | 4.854395e-51 | -8.615850e-47 |
| Msa0884290 | Msa1438050 | 0.800474 | 1.417326e-48 | -8.615850e-47 |
| Msa0884290 | Msa1447180 | 0.801404 | 9.149781e-49 | -8.615850e-47 |
| Msa0884290 | Msa1454450 | 0.827102 | 1.883251e-54 | -8.615850e-47 |
| Msa0884290 | Msa1454530 | 0.800094 | 1.693386e-48 | -8.615850e-47 |
| Msa0884290 | Msa1459960 | 0.806750 | 7.068425e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0884290 | MtrunA17_Chr4g0059521 | 92.746 | 193 | 4 | 1 | 37 | 219 | 311 | 503 | 4.16e-125 | 363 |
| Msa0884290 | MtrunA17_Chr3g0118121 | 75.000 | 204 | 38 | 3 | 27 | 219 | 302 | 503 | 3.61e-105 | 312 |
| Msa0884290 | MtrunA17_Chr3g0118081 | 76.842 | 190 | 34 | 1 | 40 | 219 | 344 | 533 | 9.89e-103 | 306 |
| Msa0884290 | MtrunA17_Chr6g0485311 | 39.205 | 176 | 95 | 2 | 45 | 210 | 326 | 499 | 4.70e-38 | 137 |
| Msa0884290 | MtrunA17_Chr6g0485301 | 38.953 | 172 | 93 | 2 | 49 | 210 | 332 | 501 | 8.64e-38 | 137 |
| Msa0884290 | MtrunA17_Chr8g0390631 | 38.122 | 181 | 100 | 2 | 40 | 210 | 315 | 493 | 3.97e-37 | 135 |
| Msa0884290 | MtrunA17_Chr8g0390651 | 37.791 | 172 | 95 | 2 | 49 | 210 | 333 | 502 | 3.66e-36 | 132 |
| Msa0884290 | MtrunA17_Chr8g0365221 | 37.791 | 172 | 95 | 2 | 49 | 210 | 371 | 540 | 2.03e-33 | 125 |
| Msa0884290 | MtrunA17_Chr3g0117861 | 38.372 | 172 | 94 | 2 | 49 | 210 | 372 | 541 | 2.88e-33 | 125 |
| Msa0884290 | MtrunA17_Chr2g0310091 | 38.372 | 172 | 94 | 2 | 40 | 201 | 360 | 529 | 1.72e-31 | 120 |
| Msa0884290 | MtrunA17_Chr4g0059221 | 36.047 | 172 | 98 | 2 | 49 | 210 | 374 | 543 | 4.22e-31 | 119 |
| Msa0884290 | MtrunA17_Chr2g0294411 | 33.951 | 162 | 93 | 4 | 40 | 192 | 352 | 508 | 2.91e-21 | 91.3 |
| Msa0884290 | MtrunA17_Chr2g0279751 | 30.939 | 181 | 108 | 6 | 39 | 203 | 310 | 489 | 1.50e-16 | 77.8 |
| Msa0884290 | MtrunA17_Chr4g0049641 | 29.787 | 188 | 115 | 6 | 40 | 211 | 338 | 524 | 2.97e-16 | 77.0 |
| Msa0884290 | MtrunA17_Chr2g0300801 | 37.795 | 127 | 75 | 3 | 27 | 153 | 309 | 431 | 6.57e-16 | 75.9 |
| Msa0884290 | MtrunA17_Chr4g0074171 | 32.867 | 143 | 88 | 3 | 52 | 192 | 329 | 465 | 3.63e-13 | 67.8 |
| Msa0884290 | MtrunA17_Chr1g0149961 | 30.282 | 142 | 93 | 2 | 52 | 192 | 329 | 465 | 5.72e-12 | 64.3 |
| Msa0884290 | MtrunA17_Chr1g0159811 | 24.615 | 195 | 132 | 6 | 24 | 215 | 260 | 442 | 2.48e-11 | 62.4 |
| Msa0884290 | MtrunA17_Chr3g0124811 | 27.907 | 172 | 116 | 5 | 24 | 192 | 262 | 428 | 3.85e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0884290 | AT1G74920.2 | 75.124 | 201 | 37 | 3 | 27 | 216 | 297 | 495 | 2.24e-105 | 313 |
| Msa0884290 | AT1G74920.1 | 75.124 | 201 | 37 | 3 | 27 | 216 | 302 | 500 | 2.80e-105 | 313 |
| Msa0884290 | AT3G48170.1 | 73.039 | 204 | 42 | 3 | 27 | 219 | 302 | 503 | 8.21e-105 | 311 |
| Msa0884290 | AT3G24503.1 | 41.436 | 181 | 94 | 2 | 40 | 210 | 322 | 500 | 1.50e-42 | 150 |
| Msa0884290 | AT1G23800.1 | 35.260 | 173 | 100 | 2 | 48 | 210 | 363 | 533 | 5.61e-32 | 122 |
| Msa0884290 | AT3G48000.1 | 36.047 | 172 | 98 | 2 | 49 | 210 | 368 | 537 | 6.13e-32 | 122 |
| Msa0884290 | AT1G79440.1 | 39.286 | 168 | 90 | 2 | 44 | 201 | 355 | 520 | 2.06e-30 | 117 |
| Msa0884290 | AT3G66658.1 | 33.333 | 162 | 94 | 4 | 40 | 192 | 352 | 508 | 2.80e-21 | 92.0 |
| Msa0884290 | AT3G66658.2 | 33.333 | 162 | 94 | 4 | 40 | 192 | 352 | 508 | 2.95e-21 | 91.7 |
| Msa0884290 | AT2G14170.2 | 31.183 | 186 | 111 | 5 | 40 | 209 | 301 | 485 | 5.98e-17 | 79.3 |
| Msa0884290 | AT2G14170.1 | 31.183 | 186 | 111 | 5 | 40 | 209 | 410 | 594 | 8.52e-17 | 79.0 |
| Msa0884290 | AT2G14170.3 | 32.394 | 142 | 92 | 2 | 40 | 178 | 410 | 550 | 1.31e-16 | 78.2 |
| Msa0884290 | AT1G54100.2 | 37.121 | 132 | 78 | 3 | 45 | 174 | 325 | 453 | 3.82e-14 | 71.2 |
| Msa0884290 | AT1G54100.1 | 37.121 | 132 | 78 | 3 | 45 | 174 | 325 | 453 | 3.82e-14 | 71.2 |
| Msa0884290 | AT2G24270.2 | 31.469 | 143 | 90 | 3 | 52 | 192 | 369 | 505 | 2.07e-11 | 63.2 |
| Msa0884290 | AT2G24270.4 | 31.469 | 143 | 90 | 3 | 52 | 192 | 329 | 465 | 2.18e-11 | 63.2 |
| Msa0884290 | AT2G24270.3 | 31.469 | 143 | 90 | 3 | 52 | 192 | 329 | 465 | 2.33e-11 | 62.8 |
| Msa0884290 | AT2G24270.1 | 31.469 | 143 | 90 | 3 | 52 | 192 | 329 | 465 | 2.33e-11 | 62.8 |
Find 43 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCTGATGCAGGCATTTA+AGG | 0.134214 | 6_1:-37511637 | Msa0884290:intron |
| ATTTGGAAAGAAGAAGTATT+TGG | 0.232708 | 6_1:-37511959 | Msa0884290:CDS |
| TGACTACTTCCATGCAAATT+TGG | 0.235483 | 6_1:-37511976 | Msa0884290:CDS |
| CATTTAAGGCCGGAATAGTA+TGG | 0.290640 | 6_1:-37511623 | Msa0884290:CDS |
| TTCAATTCATGCACGGAATC+TGG | 0.312219 | 6_1:+37513200 | None:intergenic |
| ATCCCTTGGAAGAAGGTTAC+AGG | 0.353120 | 6_1:-37512648 | Msa0884290:CDS |
| CATCAAAATTTCAGATCCCT+TGG | 0.421001 | 6_1:-37512662 | Msa0884290:CDS |
| GCAATTGACCCATACTATTC+CGG | 0.433561 | 6_1:+37511614 | None:intergenic |
| ATGCTTCACTCAAGCGCCAT+GGG | 0.461661 | 6_1:-37511583 | Msa0884290:CDS |
| ACCTGTCCTTCACTAACAAC+AGG | 0.463133 | 6_1:+37512619 | None:intergenic |
| GTCCTCTACAGCTATGGCTT+AGG | 0.463601 | 6_1:-37511781 | Msa0884290:intron |
| ATTTCAGATCCCTTGGAAGA+AGG | 0.464018 | 6_1:-37512655 | Msa0884290:CDS |
| ACCTGTTGTTAGTGAAGGAC+AGG | 0.472260 | 6_1:-37512620 | Msa0884290:intron |
| GGAATCTGGAATGGCGTCAA+TGG | 0.475294 | 6_1:+37513214 | None:intergenic |
| GTCACATCAGTTATGATGGT+TGG | 0.495328 | 6_1:+37511995 | None:intergenic |
| TTCTTCTTTCCAAATTTGCA+TGG | 0.496084 | 6_1:+37511967 | None:intergenic |
| CAATGGCAGCATCTAAAGAA+AGG | 0.502314 | 6_1:-37512031 | Msa0884290:intron |
| AAGATGTGAGCGTGTAACTA+AGG | 0.508552 | 6_1:-37511731 | Msa0884290:intron |
| CATGCTTCACTCAAGCGCCA+TGG | 0.516509 | 6_1:-37511584 | Msa0884290:CDS |
| GTACATCTCTGATGAACCAT+GGG | 0.525895 | 6_1:-37510973 | Msa0884290:CDS |
| AGTAGTCACATCAGTTATGA+TGG | 0.526637 | 6_1:+37511991 | None:intergenic |
| TAGCCTGTAACCTTCTTCCA+AGG | 0.533967 | 6_1:+37512645 | None:intergenic |
| TTGGAAGAAGGTTACAGGCT+AGG | 0.556264 | 6_1:-37512643 | Msa0884290:CDS |
| GACTGGTGGGTCTCGACCAG+AGG | 0.561492 | 6_1:-37512134 | Msa0884290:intron |
| TTCACTCAAGCGCCATGGGG+AGG | 0.564185 | 6_1:-37511579 | Msa0884290:CDS |
| CTGATGCAGGCATTTAAGGC+CGG | 0.567654 | 6_1:-37511633 | Msa0884290:intron |
| TTCTTTGTTATTGAGCTCAG+AGG | 0.569955 | 6_1:-37515083 | Msa0884290:intron |
| GTCTCGAATGCTAAGAGTGA+GGG | 0.584000 | 6_1:-37512169 | Msa0884290:CDS |
| TTCATGCACGGAATCTGGAA+TGG | 0.586797 | 6_1:+37513205 | None:intergenic |
| CTAGGACCTGTTGTTAGTGA+AGG | 0.591311 | 6_1:-37512625 | Msa0884290:CDS |
| AGCCTGTAACCTTCTTCCAA+GGG | 0.595446 | 6_1:+37512646 | None:intergenic |
| TAGATCAATAGCTTCTTCCT+CGG | 0.596377 | 6_1:+37511907 | None:intergenic |
| ATTTAAGGCCGGAATAGTAT+GGG | 0.604605 | 6_1:-37511622 | Msa0884290:CDS |
| GGAGGTTGGTACCATCCCCA+TGG | 0.607677 | 6_1:+37510957 | None:intergenic |
| AGTACATCTCTGATGAACCA+TGG | 0.616407 | 6_1:-37510974 | Msa0884290:CDS |
| ATATTGCTTCAATTCATGCA+CGG | 0.618950 | 6_1:+37513193 | None:intergenic |
| TGGGGAGGCATTAAACGTAG+TGG | 0.638861 | 6_1:-37511564 | Msa0884290:intron |
| CTACGTTTAATGCCTCCCCA+TGG | 0.639138 | 6_1:+37511567 | None:intergenic |
| CATGGCGCTTGAGTGAAGCA+TGG | 0.643282 | 6_1:+37511585 | None:intergenic |
| TGCTTCACTCAAGCGCCATG+GGG | 0.659834 | 6_1:-37511582 | Msa0884290:CDS |
| TGTCTCGAATGCTAAGAGTG+AGG | 0.660684 | 6_1:-37512170 | Msa0884290:CDS |
| TCTCTGATGAACCATGGGGA+TGG | 0.668208 | 6_1:-37510968 | Msa0884290:CDS |
| TACATCTCTGATGAACCATG+GGG | 0.778050 | 6_1:-37510972 | Msa0884290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTTAAAAAAAAATGTTTA+AGG | - | chr6_1:37512482-37512501 | Msa0884290:intron | 10.0% |
| !! | AGAAAAATAAATAAAAAGAT+AGG | + | chr6_1:37514564-37514583 | None:intergenic | 10.0% |
| !!! | TTTTGTTTAATATTTTTAAC+AGG | - | chr6_1:37515001-37515020 | Msa0884290:intron | 10.0% |
| !!! | TTTGTTTAATATTTTTAACA+GGG | - | chr6_1:37515002-37515021 | Msa0884290:intron | 10.0% |
| !! | AAATTTATATCTAAACTGTA+GGG | + | chr6_1:37512258-37512277 | None:intergenic | 15.0% |
| !! | AAAATTTATATCTAAACTGT+AGG | + | chr6_1:37512259-37512278 | None:intergenic | 15.0% |
| !!! | TCTTTTTATTTATTTTTCTC+TGG | - | chr6_1:37514565-37514584 | Msa0884290:intron | 15.0% |
| !!! | TTGTTTAATATTTTTAACAG+GGG | - | chr6_1:37515003-37515022 | Msa0884290:intron | 15.0% |
| !!! | TTTTTGATCTTATGTGATTT+TGG | - | chr6_1:37511038-37511057 | Msa0884290:intron | 20.0% |
| !!! | TTTTGATCTTATGTGATTTT+GGG | - | chr6_1:37511039-37511058 | Msa0884290:intron | 20.0% |
| !!! | GATTTGTTGTTTTGAATTTT+TGG | - | chr6_1:37511311-37511330 | Msa0884290:intron | 20.0% |
| !! | AAATAAGTTAACTATGATGA+TGG | - | chr6_1:37511513-37511532 | Msa0884290:intron | 20.0% |
| !! | TAAATTATACATTCGTGTTA+TGG | - | chr6_1:37511647-37511666 | Msa0884290:intron | 20.0% |
| !!! | TCTTTTCTTTTTTGTGATTT+TGG | - | chr6_1:37511867-37511886 | Msa0884290:intron | 20.0% |
| !! | AATATTTATCCATTGTGATT+TGG | - | chr6_1:37511923-37511942 | Msa0884290:CDS | 20.0% |
| !! | ACATAATCACACAATAATAT+AGG | + | chr6_1:37512173-37512192 | None:intergenic | 20.0% |
| !!! | GATATAAATTTTGTACGATT+TGG | - | chr6_1:37512267-37512286 | Msa0884290:intron | 20.0% |
| !!! | TCATAATTCTTTTTTATGAC+AGG | - | chr6_1:37512769-37512788 | Msa0884290:intron | 20.0% |
| !! | AAATAATTCAACATAATGGT+TGG | - | chr6_1:37512913-37512932 | Msa0884290:intron | 20.0% |
| !! | AAAGTAAATATTCACTCAAA+GGG | + | chr6_1:37512944-37512963 | None:intergenic | 20.0% |
| !! | TAAGATACTCTTATTATTTC+AGG | - | chr6_1:37513296-37513315 | Msa0884290:intron | 20.0% |
| !!! | TAGCAACATAATTTTTGAAT+AGG | - | chr6_1:37513325-37513344 | Msa0884290:intron | 20.0% |
| !!! | AACATAATTTTTGAATAGGA+TGG | - | chr6_1:37513329-37513348 | Msa0884290:intron | 20.0% |
| !! | CATATTCAATGAAAATGTAT+TGG | - | chr6_1:37513544-37513563 | Msa0884290:intron | 20.0% |
| !! | TGTATGTATAATTTATGAGA+AGG | - | chr6_1:37513662-37513681 | Msa0884290:intron | 20.0% |
| !! | TATTCTGTATTCACATTATA+TGG | - | chr6_1:37513812-37513831 | Msa0884290:intron | 20.0% |
| !! | CAAAACATAATCAATTATCA+TGG | + | chr6_1:37513973-37513992 | None:intergenic | 20.0% |
| !! | CAAGAAAACAACTAAATAAT+TGG | - | chr6_1:37514342-37514361 | Msa0884290:intron | 20.0% |
| !! | AATAAAAAGATAGGCATTTA+AGG | + | chr6_1:37514555-37514574 | None:intergenic | 20.0% |
| !! | AAAAGAAACCCATAATTATA+AGG | - | chr6_1:37514619-37514638 | Msa0884290:intron | 20.0% |
| !! | AAATTGGAATTATACATGAT+AGG | - | chr6_1:37514786-37514805 | Msa0884290:intron | 20.0% |
| !! | AATTGGAATTATACATGATA+GGG | - | chr6_1:37514787-37514806 | Msa0884290:intron | 20.0% |
| !!! | ATATTTTCAACTTTTTCTGC+AGG | - | chr6_1:37511074-37511093 | Msa0884290:intron | 25.0% |
| !! | ATTTTCTCTGTTTGTGATTT+TGG | - | chr6_1:37511190-37511209 | Msa0884290:intron | 25.0% |
| !! | TTTTCTCTGTTTGTGATTTT+GGG | - | chr6_1:37511191-37511210 | Msa0884290:intron | 25.0% |
| !!! | TTGTTTTGAATTTTTGGTTC+CGG | - | chr6_1:37511317-37511336 | Msa0884290:intron | 25.0% |
| !! | ATGTTGTTTGGATAAATCAT+TGG | - | chr6_1:37511378-37511397 | Msa0884290:intron | 25.0% |
| ! | TAGTGTTTGGTACAAAATTT+GGG | - | chr6_1:37511436-37511455 | Msa0884290:intron | 25.0% |
| ! | TAGTGTTTGGTACAAAATTT+GGG | - | chr6_1:37511436-37511455 | Msa0884290:intron | 25.0% |
| ! | AACAGTAGAGTTAAATTGAA+GGG | - | chr6_1:37511736-37511755 | Msa0884290:CDS | 25.0% |
| ! | AGTTAAATTGAAGGGTTAAA+GGG | - | chr6_1:37511744-37511763 | Msa0884290:CDS | 25.0% |
| ! | AACAAGAAATTTGCAGAAAA+AGG | - | chr6_1:37511958-37511977 | Msa0884290:CDS | 25.0% |
| ! | AAAAAGGATTACTGAAAGTT+TGG | - | chr6_1:37511974-37511993 | Msa0884290:CDS | 25.0% |
| ! | AAAAGGATTACTGAAAGTTT+GGG | - | chr6_1:37511975-37511994 | Msa0884290:CDS | 25.0% |
| !! | AGAAATTGAAGTTTTACAGA+AGG | - | chr6_1:37512027-37512046 | Msa0884290:intron | 25.0% |
| ! | TGAATTTGATTAGATAGAGA+AGG | - | chr6_1:37512117-37512136 | Msa0884290:intron | 25.0% |
| ! | TTGAGTGAGATAAATATTTG+TGG | - | chr6_1:37512555-37512574 | Msa0884290:intron | 25.0% |
| ! | GCTCAAATAATTCAACATAA+TGG | - | chr6_1:37512909-37512928 | Msa0884290:intron | 25.0% |
| ! | CAAAGTAAATATTCACTCAA+AGG | + | chr6_1:37512945-37512964 | None:intergenic | 25.0% |
| !!! | ATGGTTCTACATTTTGAATA+TGG | - | chr6_1:37513036-37513055 | Msa0884290:intron | 25.0% |
| ! | TACTTACATGTACAATAAGA+CGG | + | chr6_1:37513083-37513102 | None:intergenic | 25.0% |
| ! | TTCTGAACTTTGTAAAGTAA+AGG | - | chr6_1:37513487-37513506 | Msa0884290:intron | 25.0% |
| ! | ATAATTTATGAGAAGGAAGA+AGG | - | chr6_1:37513669-37513688 | Msa0884290:intron | 25.0% |
| ! | AGAAAGAAAACTACATTATG+TGG | + | chr6_1:37513721-37513740 | None:intergenic | 25.0% |
| !! | ACATAATGTAGTTTTCTTTC+TGG | - | chr6_1:37513720-37513739 | Msa0884290:intron | 25.0% |
| ! | TGATTCTAAACATATTTGTC+TGG | - | chr6_1:37513766-37513785 | Msa0884290:intron | 25.0% |
| !! | ATTATGTTTTGCAAATGCAA+TGG | - | chr6_1:37513982-37514001 | Msa0884290:intron | 25.0% |
| !!! | ATTTGGAAAGAAGAAGTATT+TGG | - | chr6_1:37514071-37514090 | Msa0884290:intron | 25.0% |
| ! | GGTATCTAAGTTATATACTT+TGG | - | chr6_1:37514227-37514246 | Msa0884290:intron | 25.0% |
| ! | AGACTTCACCTTATAATTAT+GGG | + | chr6_1:37514630-37514649 | None:intergenic | 25.0% |
| ! | TAGACTTCACCTTATAATTA+TGG | + | chr6_1:37514631-37514650 | None:intergenic | 25.0% |
| ! | ATTAAACAAAATCAGACTCA+AGG | + | chr6_1:37514992-37515011 | None:intergenic | 25.0% |
| !! | TTTGATTGTTTTGCATGTTC+TGG | - | chr6_1:37510983-37511002 | Msa0884290:CDS | 30.0% |
| ! | TTTGTTGGTTATCAAGCATA+AGG | - | chr6_1:37511097-37511116 | Msa0884290:intron | 30.0% |
| ! | AGCATAAGGTTTTCTGATTT+TGG | - | chr6_1:37511111-37511130 | Msa0884290:intron | 30.0% |
| AAGCTTAAGTAATTGTGATG+TGG | - | chr6_1:37511246-37511265 | Msa0884290:intron | 30.0% | |
| TTAAGTAATTGTGATGTGGT+TGG | - | chr6_1:37511250-37511269 | Msa0884290:intron | 30.0% | |
| AATCACAAAGAAAAGCCATA+AGG | + | chr6_1:37511295-37511314 | None:intergenic | 30.0% | |
| TGAACAAACTATATCAGTTC+CGG | + | chr6_1:37511339-37511358 | None:intergenic | 30.0% | |
| !! | TAGTTTGTTCATACGAGATT+TGG | - | chr6_1:37511348-37511367 | Msa0884290:intron | 30.0% |
| ! | AGTTTGTTCATACGAGATTT+GGG | - | chr6_1:37511349-37511368 | Msa0884290:intron | 30.0% |
| GGATAAATCATTGGTGTATA+AGG | - | chr6_1:37511387-37511406 | Msa0884290:intron | 30.0% | |
| GTCTTAGAATGAGATTATGA+TGG | - | chr6_1:37511413-37511432 | Msa0884290:intron | 30.0% | |
| GTAGTGTTTGGTACAAAATT+TGG | - | chr6_1:37511435-37511454 | Msa0884290:intron | 30.0% | |
| TGCTTAGAATGAGATTATGA+TGG | - | chr6_1:37511560-37511579 | Msa0884290:intron | 30.0% | |
| GTAGTGTTTGGTACAAAATT+TGG | - | chr6_1:37511435-37511454 | Msa0884290:intron | 30.0% | |
| GAACAGTAGAGTTAAATTGA+AGG | - | chr6_1:37511735-37511754 | Msa0884290:CDS | 30.0% | |
| GAGTTAAATTGAAGGGTTAA+AGG | - | chr6_1:37511743-37511762 | Msa0884290:CDS | 30.0% | |
| !! | TTATCCATTGTGATTTGGTT+TGG | - | chr6_1:37511928-37511947 | Msa0884290:CDS | 30.0% |
| TAAGCTTAATCTGATTCAGA+AGG | - | chr6_1:37512070-37512089 | Msa0884290:intron | 30.0% | |
| !! | GATAGTTGATGAAATGTTTG+TGG | - | chr6_1:37512209-37512228 | Msa0884290:intron | 30.0% |
| TCAGAAAACACATTAGAAGT+TGG | - | chr6_1:37512303-37512322 | Msa0884290:intron | 30.0% | |
| ! | AGAAAAAGCTATACAGGTTT+TGG | - | chr6_1:37512347-37512366 | Msa0884290:intron | 30.0% |
| !!! | TGTTTTGAGAAAAGTGCTTA+TGG | - | chr6_1:37512419-37512438 | Msa0884290:intron | 30.0% |
| !!! | GTTTTGAGAAAAGTGCTTAT+GGG | - | chr6_1:37512420-37512439 | Msa0884290:intron | 30.0% |
| !!! | TTTTGAGAAAAGTGCTTATG+GGG | - | chr6_1:37512421-37512440 | Msa0884290:intron | 30.0% |
| ATAATCATAAACTACCCAAG+AGG | + | chr6_1:37512533-37512552 | None:intergenic | 30.0% | |
| ATAGAGTTAAGTTCTTTGTC+AGG | - | chr6_1:37512590-37512609 | Msa0884290:intron | 30.0% | |
| ATCATCTTTGCTTATGTTGA+TGG | - | chr6_1:37512629-37512648 | Msa0884290:CDS | 30.0% | |
| ATATTGCTTCAATTCATGCA+CGG | + | chr6_1:37512840-37512859 | None:intergenic | 30.0% | |
| ACTTACATGTACAATAAGAC+GGG | + | chr6_1:37513082-37513101 | None:intergenic | 30.0% | |
| GACAAAAGAAAAAACGCAAA+TGG | + | chr6_1:37513172-37513191 | None:intergenic | 30.0% | |
| ! | TTTTCTTTTGTCTGCGTATA+TGG | - | chr6_1:37513180-37513199 | Msa0884290:CDS | 30.0% |
| ! | TTTCTTTTGTCTGCGTATAT+GGG | - | chr6_1:37513181-37513200 | Msa0884290:CDS | 30.0% |
| TAGAACTTTGTCAGACAAAT+TGG | - | chr6_1:37513230-37513249 | Msa0884290:CDS | 30.0% | |
| ! | TTTTGAATAGGATGGTGAAA+TGG | - | chr6_1:37513337-37513356 | Msa0884290:intron | 30.0% |
| TTCTTCTTTCCAAATTTGCA+TGG | + | chr6_1:37514066-37514085 | None:intergenic | 30.0% | |
| ! | TTCATCTGTATACTGTTTTC+CGG | - | chr6_1:37514191-37514210 | Msa0884290:intron | 30.0% |
| !! | TTATTTTTCTCTGGATGAAG+AGG | - | chr6_1:37514574-37514593 | Msa0884290:intron | 30.0% |
| ACAGTCAATAAAGCTATGAA+CGG | - | chr6_1:37514732-37514751 | Msa0884290:intron | 30.0% | |
| ! | AATTCCAATTTTACCATGCA+AGG | + | chr6_1:37514777-37514796 | None:intergenic | 30.0% |
| TCTGACATTAATACAGGTTT+AGG | + | chr6_1:37514924-37514943 | None:intergenic | 30.0% | |
| !! | TTCTTTGTTATTGAGCTCAG+AGG | - | chr6_1:37510947-37510966 | Msa0884290:CDS | 35.0% |
| !! | AACTTTTTCTGCAGGTTTGT+TGG | - | chr6_1:37511082-37511101 | Msa0884290:intron | 35.0% |
| !! | GGTTTTCTGATTTTGGTAGT+TGG | - | chr6_1:37511118-37511137 | Msa0884290:intron | 35.0% |
| ! | TTTGAGACCAAGTAACCTTA+TGG | - | chr6_1:37511277-37511296 | Msa0884290:intron | 35.0% |
| AGAAAAGCCATAAGGTTACT+TGG | + | chr6_1:37511287-37511306 | None:intergenic | 35.0% | |
| TTTGGGTGAAAGATGTTGTT+TGG | - | chr6_1:37511366-37511385 | Msa0884290:intron | 35.0% | |
| ! | GAGATTATGATGGTAGTGTT+TGG | - | chr6_1:37511423-37511442 | Msa0884290:intron | 35.0% |
| !! | GTTAACTATGATGATGGCAT+TGG | - | chr6_1:37511519-37511538 | Msa0884290:intron | 35.0% |
| ! | GAGATTATGATGGTAGTGTT+TGG | - | chr6_1:37511423-37511442 | Msa0884290:intron | 35.0% |
| ! | TTTCTCTCTTTCTGCGATTT+TGG | - | chr6_1:37511700-37511719 | Msa0884290:intron | 35.0% |
| !! | GCGATTTTGGTAATTGATTG+AGG | - | chr6_1:37511713-37511732 | Msa0884290:intron | 35.0% |
| GTAACCAGAGATTCAATTGA+AGG | - | chr6_1:37511775-37511794 | Msa0884290:intron | 35.0% | |
| AAAGCCTTCAATTGAATCTC+TGG | + | chr6_1:37511782-37511801 | None:intergenic | 35.0% | |
| ATTGCCAAACCAAATCACAA+TGG | + | chr6_1:37511935-37511954 | None:intergenic | 35.0% | |
| ! | TTTGGGTAAAAGCTGGATTT+TGG | - | chr6_1:37511992-37512011 | Msa0884290:CDS | 35.0% |
| TAATCTGATTCAGAAGGTTG+TGG | - | chr6_1:37512076-37512095 | Msa0884290:intron | 35.0% | |
| TCTAAACTGTAGGGAATTGA+GGG | + | chr6_1:37512249-37512268 | None:intergenic | 35.0% | |
| ATCTAAACTGTAGGGAATTG+AGG | + | chr6_1:37512250-37512269 | None:intergenic | 35.0% | |
| ATCTGCAGAAAAAGCTATAC+AGG | - | chr6_1:37512341-37512360 | Msa0884290:intron | 35.0% | |
| TAGATAGATGTTGAGGTGAT+TGG | + | chr6_1:37512736-37512755 | None:intergenic | 35.0% | |
| GTCACTATAGATAGATGTTG+AGG | + | chr6_1:37512743-37512762 | None:intergenic | 35.0% | |
| TCATGTATTCAGCAGAGTAA+GGG | - | chr6_1:37512873-37512892 | Msa0884290:intron | 35.0% | |
| TGAGCTAGCACAAAAGTTTA+CGG | + | chr6_1:37513128-37513147 | None:intergenic | 35.0% | |
| ! | TTGTCAGACAAATTGGTAGT+TGG | - | chr6_1:37513237-37513256 | Msa0884290:CDS | 35.0% |
| ! | TGTCAGACAAATTGGTAGTT+GGG | - | chr6_1:37513238-37513257 | Msa0884290:CDS | 35.0% |
| !! | ATTGGTAGTTGGGATTTTGT+CGG | - | chr6_1:37513248-37513267 | Msa0884290:intron | 35.0% |
| CATCAAAATTTCAGATCCCT+TGG | - | chr6_1:37513368-37513387 | Msa0884290:intron | 35.0% | |
| ! | ATGTCAATTTGCTTGTACCA+TGG | - | chr6_1:37513590-37513609 | Msa0884290:intron | 35.0% |
| !! | ATGTAGTTTTCTTTCTGGTC+AGG | - | chr6_1:37513725-37513744 | Msa0884290:intron | 35.0% |
| ! | AGAAAGCATAATCATACCTC+TGG | + | chr6_1:37513915-37513934 | None:intergenic | 35.0% |
| AGTAGTCACATCAGTTATGA+TGG | + | chr6_1:37514042-37514061 | None:intergenic | 35.0% | |
| TGACTACTTCCATGCAAATT+TGG | - | chr6_1:37514054-37514073 | Msa0884290:intron | 35.0% | |
| ! | AACGTTTTTACACACAGAAC+AGG | + | chr6_1:37514098-37514117 | None:intergenic | 35.0% |
| TAGATCAATAGCTTCTTCCT+CGG | + | chr6_1:37514126-37514145 | None:intergenic | 35.0% | |
| ACTAAGGTGAGACTGATTAT+AGG | - | chr6_1:37514315-37514334 | Msa0884290:intron | 35.0% | |
| ! | ATTTAAGGCCGGAATAGTAT+GGG | - | chr6_1:37514408-37514427 | Msa0884290:intron | 35.0% |
| ATAAAGCTATGAACGGATCA+TGG | - | chr6_1:37514739-37514758 | Msa0884290:intron | 35.0% | |
| CATTCCTTGCATGGTAAAAT+TGG | - | chr6_1:37514770-37514789 | Msa0884290:intron | 35.0% | |
| TGATAGGGATTAACATGTGT+CGG | - | chr6_1:37514802-37514821 | Msa0884290:intron | 35.0% | |
| ATGTTTCCTTGGTCTGAATT+TGG | - | chr6_1:37514834-37514853 | Msa0884290:intron | 35.0% | |
| TTTATGCCAAATTCAGACCA+AGG | + | chr6_1:37514843-37514862 | None:intergenic | 35.0% | |
| TTGGTCTGAATTTGGCATAA+AGG | - | chr6_1:37514842-37514861 | Msa0884290:intron | 35.0% | |
| TGGTCTGAATTTGGCATAAA+GGG | - | chr6_1:37514843-37514862 | Msa0884290:intron | 35.0% | |
| ATTTGGCATAAAGGGATAGT+TGG | - | chr6_1:37514851-37514870 | Msa0884290:intron | 35.0% | |
| ACCTGTATTAATGTCAGATC+TGG | - | chr6_1:37514926-37514945 | Msa0884290:intron | 35.0% | |
| !!! | TGTGATTTTGGTTGTTCTGC+TGG | - | chr6_1:37511879-37511898 | Msa0884290:intron | 40.0% |
| CTGAAAGTTTGGGTAAAAGC+TGG | - | chr6_1:37511985-37512004 | Msa0884290:CDS | 40.0% | |
| AGAAGGTAGAAACTATGAGC+TGG | - | chr6_1:37512044-37512063 | Msa0884290:intron | 40.0% | |
| TCATAAACTACCCAAGAGGT+GGG | + | chr6_1:37512529-37512548 | None:intergenic | 40.0% | |
| ATCATAAACTACCCAAGAGG+TGG | + | chr6_1:37512530-37512549 | None:intergenic | 40.0% | |
| TTCAATTCATGCACGGAATC+TGG | + | chr6_1:37512833-37512852 | None:intergenic | 40.0% | |
| CTCATGTATTCAGCAGAGTA+AGG | - | chr6_1:37512872-37512891 | Msa0884290:intron | 40.0% | |
| GTCAGAGTTGCTTGAAACTA+TGG | - | chr6_1:37513017-37513036 | Msa0884290:intron | 40.0% | |
| CTAGCACAAAAGTTTACGGA+AGG | + | chr6_1:37513124-37513143 | None:intergenic | 40.0% | |
| ATTTCAGATCCCTTGGAAGA+AGG | - | chr6_1:37513375-37513394 | Msa0884290:intron | 40.0% | |
| ! | AATTTGCTTGTACCATGGAC+TGG | - | chr6_1:37513595-37513614 | Msa0884290:intron | 40.0% |
| CAATGGCAGCATCTAAAGAA+AGG | - | chr6_1:37513999-37514018 | Msa0884290:intron | 40.0% | |
| GTCACATCAGTTATGATGGT+TGG | + | chr6_1:37514038-37514057 | None:intergenic | 40.0% | |
| TGTAAAAACGTTTAGCACCG+AGG | - | chr6_1:37514106-37514125 | Msa0884290:intron | 40.0% | |
| ! | TACTGTTTTCCGGTCATTTG+TGG | - | chr6_1:37514201-37514220 | Msa0884290:intron | 40.0% |
| ! | TTTTCCGGTCATTTGTGGAA+TGG | - | chr6_1:37514206-37514225 | Msa0884290:intron | 40.0% |
| GATACCATTCCACAAATGAC+CGG | + | chr6_1:37514213-37514232 | None:intergenic | 40.0% | |
| AAGATGTGAGCGTGTAACTA+AGG | - | chr6_1:37514299-37514318 | Msa0884290:intron | 40.0% | |
| AGTTTATCTTGCTCTGATGC+AGG | - | chr6_1:37514384-37514403 | Msa0884290:intron | 40.0% | |
| ! | CATTTAAGGCCGGAATAGTA+TGG | - | chr6_1:37514407-37514426 | Msa0884290:intron | 40.0% |
| GCAATTGACCCATACTATTC+CGG | + | chr6_1:37514419-37514438 | None:intergenic | 40.0% | |
| ! | GGCATTAAACGTAGTGGTTT+TGG | - | chr6_1:37514472-37514491 | Msa0884290:intron | 40.0% |
| CATACCATTCTCCTAGTTCA+CGG | + | chr6_1:37514498-37514517 | None:intergenic | 40.0% | |
| TAAGGTGAAGTCTAAGTCTG+TGG | - | chr6_1:37514637-37514656 | Msa0884290:intron | 40.0% | |
| GCATAAAGGGATAGTTGGAT+CGG | - | chr6_1:37514856-37514875 | Msa0884290:intron | 40.0% | |
| CATAAAGGGATAGTTGGATC+GGG | - | chr6_1:37514857-37514876 | Msa0884290:intron | 40.0% | |
| GCCAGATCTGACATTAATAC+AGG | + | chr6_1:37514930-37514949 | None:intergenic | 40.0% | |
| TATTAATGTCAGATCTGGCG+TGG | - | chr6_1:37514931-37514950 | Msa0884290:intron | 40.0% | |
| ATTAATGTCAGATCTGGCGT+GGG | - | chr6_1:37514932-37514951 | Msa0884290:intron | 40.0% | |
| GACTCAAGGTCAAATAAGAC+AGG | + | chr6_1:37514978-37514997 | None:intergenic | 40.0% | |
| AGTACATCTCTGATGAACCA+TGG | - | chr6_1:37515056-37515075 | Msa0884290:intron | 40.0% | |
| GTACATCTCTGATGAACCAT+GGG | - | chr6_1:37515057-37515076 | Msa0884290:intron | 40.0% | |
| TACATCTCTGATGAACCATG+GGG | - | chr6_1:37515058-37515077 | Msa0884290:intron | 40.0% | |
| ! | GAGGTGGGTTCTACAACTAA+AGG | + | chr6_1:37512514-37512533 | None:intergenic | 45.0% |
| TAGTTGTAGAACCCACCTCT+TGG | - | chr6_1:37512515-37512534 | Msa0884290:intron | 45.0% | |
| AGTTGTAGAACCCACCTCTT+GGG | - | chr6_1:37512516-37512535 | Msa0884290:intron | 45.0% | |
| TTCATGCACGGAATCTGGAA+TGG | + | chr6_1:37512828-37512847 | None:intergenic | 45.0% | |
| ATCCCTTGGAAGAAGGTTAC+AGG | - | chr6_1:37513382-37513401 | Msa0884290:intron | 45.0% | |
| AGCCTGTAACCTTCTTCCAA+GGG | + | chr6_1:37513387-37513406 | None:intergenic | 45.0% | |
| TAGCCTGTAACCTTCTTCCA+AGG | + | chr6_1:37513388-37513407 | None:intergenic | 45.0% | |
| TTGGAAGAAGGTTACAGGCT+AGG | - | chr6_1:37513387-37513406 | Msa0884290:intron | 45.0% | |
| CTAGGACCTGTTGTTAGTGA+AGG | - | chr6_1:37513405-37513424 | Msa0884290:intron | 45.0% | |
| ACCTGTTGTTAGTGAAGGAC+AGG | - | chr6_1:37513410-37513429 | Msa0884290:intron | 45.0% | |
| ACCTGTCCTTCACTAACAAC+AGG | + | chr6_1:37513414-37513433 | None:intergenic | 45.0% | |
| ! | GGAAGCTTTATACCAGTCCA+TGG | + | chr6_1:37513610-37513629 | None:intergenic | 45.0% |
| !! | AGCTTCCTGAGAAGCACTAT+TGG | - | chr6_1:37513623-37513642 | Msa0884290:intron | 45.0% |
| TGTCTCGAATGCTAAGAGTG+AGG | - | chr6_1:37513860-37513879 | Msa0884290:intron | 45.0% | |
| GTCTCGAATGCTAAGAGTGA+GGG | - | chr6_1:37513861-37513880 | Msa0884290:intron | 45.0% | |
| !!! | GTGCGACAATTTTGACTGGT+GGG | - | chr6_1:37513883-37513902 | Msa0884290:intron | 45.0% |
| CTGTGCAAGTGTGTTCAGTT+AGG | - | chr6_1:37513933-37513952 | Msa0884290:intron | 45.0% | |
| ACTTTGGTCCTCTACAGCTA+TGG | - | chr6_1:37514243-37514262 | Msa0884290:intron | 45.0% | |
| TGCTCTGATGCAGGCATTTA+AGG | - | chr6_1:37514393-37514412 | Msa0884290:intron | 45.0% | |
| TGATCACTACACTGTCAGCA+GGG | + | chr6_1:37514683-37514702 | None:intergenic | 45.0% | |
| ATGATCACTACACTGTCAGC+AGG | + | chr6_1:37514684-37514703 | None:intergenic | 45.0% | |
| GGCACATTTGCATGTTTCCT+TGG | - | chr6_1:37514823-37514842 | Msa0884290:intron | 45.0% | |
| GGTTGTTCTGCTGGAAGAGT+AGG | - | chr6_1:37511888-37511907 | Msa0884290:intron | 50.0% | |
| GTTCTGCTGGAAGAGTAGGT+AGG | - | chr6_1:37511892-37511911 | Msa0884290:intron | 50.0% | |
| AAGTGCTTATGGGGCATAGC+AGG | - | chr6_1:37512430-37512449 | Msa0884290:intron | 50.0% | |
| GGCATAGCAGGAGCTGAAAT+GGG | - | chr6_1:37512442-37512461 | Msa0884290:intron | 50.0% | |
| ! | GGAATCTGGAATGGCGTCAA+TGG | + | chr6_1:37512819-37512838 | None:intergenic | 50.0% |
| !! | TCCTGAGAAGCACTATTGGC+TGG | - | chr6_1:37513627-37513646 | Msa0884290:intron | 50.0% |
| ACCAGCCAATAGTGCTTCTC+AGG | + | chr6_1:37513631-37513650 | None:intergenic | 50.0% | |
| !! | GAGAAGCACTATTGGCTGGT+TGG | - | chr6_1:37513631-37513650 | Msa0884290:intron | 50.0% |
| !! | GAGGGTGCGACAATTTTGAC+TGG | - | chr6_1:37513879-37513898 | Msa0884290:intron | 50.0% |
| !!! | GGTGCGACAATTTTGACTGG+TGG | - | chr6_1:37513882-37513901 | Msa0884290:intron | 50.0% |
| GTCCTCTACAGCTATGGCTT+AGG | - | chr6_1:37514249-37514268 | Msa0884290:intron | 50.0% | |
| CACCTAAGCCATAGCTGTAG+AGG | + | chr6_1:37514254-37514273 | None:intergenic | 50.0% | |
| ! | CTGATGCAGGCATTTAAGGC+CGG | - | chr6_1:37514397-37514416 | Msa0884290:intron | 50.0% |
| ATGCTTCACTCAAGCGCCAT+GGG | - | chr6_1:37514447-37514466 | Msa0884290:intron | 50.0% | |
| CTACGTTTAATGCCTCCCCA+TGG | + | chr6_1:37514466-37514485 | None:intergenic | 50.0% | |
| !! | TGGGGAGGCATTAAACGTAG+TGG | - | chr6_1:37514466-37514485 | Msa0884290:intron | 50.0% |
| !!! | AGTGGTTTTGGCCGTGAACT+AGG | - | chr6_1:37514484-37514503 | Msa0884290:intron | 50.0% |
| TTGGCCGTGAACTAGGAGAA+TGG | - | chr6_1:37514491-37514510 | Msa0884290:intron | 50.0% | |
| CTATGAACGGATCATGGCAC+TGG | - | chr6_1:37514745-37514764 | Msa0884290:intron | 50.0% | |
| TCTCTGATGAACCATGGGGA+TGG | - | chr6_1:37515062-37515081 | Msa0884290:intron | 50.0% | |
| GGGCATAGCAGGAGCTGAAA+TGG | - | chr6_1:37512441-37512460 | Msa0884290:intron | 55.0% | |
| CATGGCGCTTGAGTGAAGCA+TGG | + | chr6_1:37514448-37514467 | None:intergenic | 55.0% | |
| CATGCTTCACTCAAGCGCCA+TGG | - | chr6_1:37514446-37514465 | Msa0884290:intron | 55.0% | |
| TGCTTCACTCAAGCGCCATG+GGG | - | chr6_1:37514448-37514467 | Msa0884290:intron | 55.0% | |
| ! | GCACTGGTGCATTCCTTGCA+TGG | - | chr6_1:37514761-37514780 | Msa0884290:intron | 55.0% |
| TTCACTCAAGCGCCATGGGG+AGG | - | chr6_1:37514451-37514470 | Msa0884290:intron | 60.0% | |
| !! | GGAGGTTGGTACCATCCCCA+TGG | + | chr6_1:37515076-37515095 | None:intergenic | 60.0% |
| ! | GACTGGTGGGTCTCGACCAG+AGG | - | chr6_1:37513896-37513915 | Msa0884290:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 37510947 | 37515105 | 37510947 | ID=Msa0884290;Name=Msa0884290 |
| chr6_1 | mRNA | 37510947 | 37515105 | 37510947 | ID=Msa0884290-mRNA-1;Parent=Msa0884290;Name=Msa0884290-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.37|0.22|0.55|0.62|0.55|9|0|219 |
| chr6_1 | exon | 37515084 | 37515105 | 37515084 | ID=Msa0884290-mRNA-1:exon:8827;Parent=Msa0884290-mRNA-1 |
| chr6_1 | exon | 37514949 | 37514956 | 37514949 | ID=Msa0884290-mRNA-1:exon:8826;Parent=Msa0884290-mRNA-1 |
| chr6_1 | exon | 37513176 | 37513261 | 37513176 | ID=Msa0884290-mRNA-1:exon:8825;Parent=Msa0884290-mRNA-1 |
| chr6_1 | exon | 37512621 | 37512705 | 37512621 | ID=Msa0884290-mRNA-1:exon:8824;Parent=Msa0884290-mRNA-1 |
| chr6_1 | exon | 37512135 | 37512212 | 37512135 | ID=Msa0884290-mRNA-1:exon:8823;Parent=Msa0884290-mRNA-1 |
| chr6_1 | exon | 37511893 | 37512044 | 37511893 | ID=Msa0884290-mRNA-1:exon:8822;Parent=Msa0884290-mRNA-1 |
| chr6_1 | exon | 37511732 | 37511792 | 37511732 | ID=Msa0884290-mRNA-1:exon:8821;Parent=Msa0884290-mRNA-1 |
| chr6_1 | exon | 37511565 | 37511646 | 37511565 | ID=Msa0884290-mRNA-1:exon:8820;Parent=Msa0884290-mRNA-1 |
| chr6_1 | exon | 37510947 | 37511029 | 37510947 | ID=Msa0884290-mRNA-1:exon:8819;Parent=Msa0884290-mRNA-1 |
| chr6_1 | CDS | 37515084 | 37515105 | 37515084 | ID=Msa0884290-mRNA-1:cds;Parent=Msa0884290-mRNA-1 |
| chr6_1 | CDS | 37514949 | 37514956 | 37514949 | ID=Msa0884290-mRNA-1:cds;Parent=Msa0884290-mRNA-1 |
| chr6_1 | CDS | 37513176 | 37513261 | 37513176 | ID=Msa0884290-mRNA-1:cds;Parent=Msa0884290-mRNA-1 |
| chr6_1 | CDS | 37512621 | 37512705 | 37512621 | ID=Msa0884290-mRNA-1:cds;Parent=Msa0884290-mRNA-1 |
| chr6_1 | CDS | 37512135 | 37512212 | 37512135 | ID=Msa0884290-mRNA-1:cds;Parent=Msa0884290-mRNA-1 |
| chr6_1 | CDS | 37511893 | 37512044 | 37511893 | ID=Msa0884290-mRNA-1:cds;Parent=Msa0884290-mRNA-1 |
| chr6_1 | CDS | 37511732 | 37511792 | 37511732 | ID=Msa0884290-mRNA-1:cds;Parent=Msa0884290-mRNA-1 |
| chr6_1 | CDS | 37511565 | 37511646 | 37511565 | ID=Msa0884290-mRNA-1:cds;Parent=Msa0884290-mRNA-1 |
| chr6_1 | CDS | 37510947 | 37511029 | 37510947 | ID=Msa0884290-mRNA-1:cds;Parent=Msa0884290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
