Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296220 | XP_003596535.2 | 94.505 | 273 | 15 | 0 | 1 | 273 | 1 | 273 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296220 | sp|P21747|EA92_VICFA | 43.382 | 272 | 139 | 7 | 1 | 265 | 1 | 264 | 8.06e-69 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296220 | G7ITL0 | 94.505 | 273 | 15 | 0 | 1 | 273 | 1 | 273 | 0.0 | 546 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0217110 | Msa0296220 | 0.884346 | 2.073418e-71 | -8.615850e-47 |
| Msa0217130 | Msa0296220 | 0.954689 | 1.679334e-112 | -8.615850e-47 |
| Msa0217160 | Msa0296220 | 0.951070 | 4.422048e-109 | -8.615850e-47 |
| Msa0256730 | Msa0296220 | 0.982909 | 2.540654e-156 | -8.615850e-47 |
| Msa0296220 | Msa1385290 | 0.938532 | 5.763810e-99 | -8.615850e-47 |
| Msa0296220 | Msa1385330 | 0.942465 | 6.849393e-102 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296220 | MtrunA17_Chr2g0318901 | 94.505 | 273 | 15 | 0 | 1 | 273 | 1 | 273 | 0.0 | 546 |
| Msa0296220 | MtrunA17_Chr2g0318871 | 83.150 | 273 | 46 | 0 | 1 | 273 | 1 | 273 | 6.66e-176 | 485 |
| Msa0296220 | MtrunA17_Chr2g0318931 | 63.569 | 269 | 89 | 5 | 1 | 261 | 5 | 272 | 2.61e-123 | 352 |
| Msa0296220 | MtrunA17_Chr8g0355861 | 44.776 | 268 | 133 | 7 | 1 | 260 | 1 | 261 | 9.12e-78 | 237 |
| Msa0296220 | MtrunA17_Chr8g0355321 | 37.217 | 309 | 130 | 6 | 10 | 260 | 1 | 303 | 3.60e-73 | 226 |
| Msa0296220 | MtrunA17_Chr1g0168781 | 42.435 | 271 | 142 | 6 | 1 | 264 | 1 | 264 | 3.52e-72 | 222 |
| Msa0296220 | MtrunA17_Chr8g0355871 | 45.918 | 196 | 97 | 3 | 71 | 259 | 29 | 222 | 2.35e-60 | 191 |
| Msa0296220 | MtrunA17_Chr8g0355311 | 48.824 | 170 | 80 | 2 | 96 | 265 | 34 | 196 | 1.76e-57 | 182 |
| Msa0296220 | MtrunA17_Chr8g0355841 | 53.165 | 158 | 73 | 1 | 111 | 268 | 362 | 518 | 2.50e-57 | 191 |
| Msa0296220 | MtrunA17_Chr8g0355331 | 45.294 | 170 | 86 | 2 | 97 | 266 | 266 | 428 | 3.43e-53 | 178 |
| Msa0296220 | MtrunA17_Chr8g0355831 | 54.667 | 150 | 67 | 1 | 111 | 260 | 204 | 352 | 2.21e-51 | 172 |
| Msa0296220 | MtrunA17_Chr8g0355831 | 29.752 | 121 | 66 | 3 | 28 | 133 | 26 | 142 | 9.96e-11 | 61.6 |
| Msa0296220 | MtrunA17_Chr1g0147261 | 33.663 | 303 | 149 | 12 | 1 | 257 | 1 | 297 | 3.40e-44 | 151 |
| Msa0296220 | MtrunA17_Chr3g0139431 | 31.579 | 323 | 146 | 12 | 6 | 259 | 5 | 321 | 3.42e-44 | 152 |
| Msa0296220 | MtrunA17_Chr1g0147311 | 28.746 | 327 | 158 | 9 | 5 | 258 | 30 | 354 | 3.44e-39 | 140 |
| Msa0296220 | MtrunA17_Chr1g0147331 | 29.538 | 325 | 153 | 11 | 5 | 258 | 4 | 323 | 5.43e-38 | 136 |
| Msa0296220 | MtrunA17_Chr1g0147241 | 30.671 | 313 | 158 | 12 | 1 | 257 | 1 | 310 | 1.89e-37 | 134 |
| Msa0296220 | MtrunA17_Chr1g0146631 | 28.923 | 325 | 155 | 11 | 5 | 258 | 4 | 323 | 1.44e-36 | 132 |
| Msa0296220 | MtrunA17_Chr1g0147291 | 32.456 | 228 | 126 | 9 | 57 | 258 | 40 | 265 | 9.27e-31 | 115 |
| Msa0296220 | MtrunA17_Chr1g0147301 | 32.618 | 233 | 123 | 10 | 57 | 258 | 54 | 283 | 1.35e-30 | 115 |
| Msa0296220 | MtrunA17_Chr1g0147271 | 34.579 | 214 | 111 | 7 | 73 | 258 | 171 | 383 | 5.02e-30 | 116 |
| Msa0296220 | MtrunA17_Chr1g0147321 | 32.456 | 228 | 126 | 9 | 56 | 257 | 10 | 235 | 7.10e-30 | 113 |
| Msa0296220 | MtrunA17_Chr1g0147251 | 31.278 | 227 | 123 | 6 | 58 | 257 | 20 | 240 | 1.21e-29 | 112 |
| Msa0296220 | MtrunA17_Chr3g0144421 | 29.310 | 232 | 129 | 10 | 59 | 259 | 75 | 302 | 1.31e-19 | 86.7 |
| Msa0296220 | MtrunA17_Chr4g0034821 | 29.778 | 225 | 116 | 11 | 73 | 261 | 75 | 293 | 4.27e-18 | 82.0 |
| Msa0296220 | MtrunA17_Chr3g0138231 | 31.250 | 144 | 89 | 4 | 128 | 261 | 125 | 268 | 1.96e-15 | 74.3 |
| Msa0296220 | MtrunA17_Chr4g0034731 | 33.566 | 143 | 83 | 5 | 129 | 259 | 290 | 432 | 6.90e-15 | 73.9 |
| Msa0296220 | MtrunA17_Chr4g0034721 | 34.965 | 143 | 81 | 6 | 129 | 259 | 434 | 576 | 1.31e-14 | 73.6 |
| Msa0296220 | MtrunA17_Chr3g0144451 | 32.639 | 144 | 87 | 5 | 128 | 261 | 134 | 277 | 1.55e-14 | 72.0 |
| Msa0296220 | MtrunA17_Chr4g0076231 | 26.897 | 145 | 95 | 5 | 123 | 257 | 13 | 156 | 5.17e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296220 | AT5G25610.1 | 33.036 | 224 | 121 | 8 | 63 | 257 | 166 | 389 | 7.52e-29 | 113 |
| Msa0296220 | AT1G49320.1 | 34.459 | 148 | 82 | 5 | 126 | 258 | 131 | 278 | 2.78e-16 | 77.4 |
Find 64 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCATTTCCTTGGAAATA+AGG | 0.188317 | 2_3:+49287847 | Msa0296220:CDS |
| ACAAAGATTGTGCCTCTTTA+GGG | 0.230864 | 2_3:-49288059 | None:intergenic |
| AACAAAGATTGTGCCTCTTT+AGG | 0.250870 | 2_3:-49288060 | None:intergenic |
| GTCTTATCAATGATAATTTC+AGG | 0.264308 | 2_3:+49288188 | Msa0296220:three_prime_UTR |
| GACAATAAAATACAACCTTT+TGG | 0.266567 | 2_3:-49287670 | None:intergenic |
| CGTCCCTTTGCACAACCTTA+TGG | 0.298036 | 2_3:+49287383 | Msa0296220:CDS |
| CACTGCCTGAAGAAGAATAT+TGG | 0.300262 | 2_3:+49286188 | Msa0296220:CDS |
| TGGTGCCAATGTTGCTGTTT+AGG | 0.323097 | 2_3:+49287910 | Msa0296220:CDS |
| GCTTCCCAATATTCTTCTTC+AGG | 0.355894 | 2_3:-49286193 | None:intergenic |
| AAGAATATTGGGAAGCTGTT+TGG | 0.356329 | 2_3:+49286200 | Msa0296220:CDS |
| TCCCTTGTTGATTTCAAGAA+TGG | 0.360833 | 2_3:+49285747 | None:intergenic |
| GCATTGTCCAAACCTAAATT+AGG | 0.363667 | 2_3:-49287884 | None:intergenic |
| AAATCCTTAGGAACATTAAT+CGG | 0.372556 | 2_3:+49287515 | Msa0296220:CDS |
| GTTTGTCATGCTGATACTTC+AGG | 0.375794 | 2_3:+49287767 | Msa0296220:CDS |
| GGATTTGCAATTTCTAAGCT+TGG | 0.386794 | 2_3:+49287536 | Msa0296220:CDS |
| TATGAACATGAACTTTATCC+TGG | 0.401999 | 2_3:+49287332 | Msa0296220:CDS |
| CCCTTGTTGATTTCAAGAAT+GGG | 0.405370 | 2_3:+49285748 | None:intergenic |
| AAACCTGTTTGTCATTTCCT+TGG | 0.406653 | 2_3:+49287839 | Msa0296220:CDS |
| GATGTGCAGCTTGCACTTGC+AGG | 0.411503 | 2_3:+49286151 | Msa0296220:intron |
| ACTGCCTGAAGAAGAATATT+GGG | 0.412787 | 2_3:+49286189 | Msa0296220:CDS |
| ATAGAGTCAGTGCAAAATCT+TGG | 0.422753 | 2_3:+49287614 | Msa0296220:CDS |
| ATGGGTACCTAATTTAGGTT+TGG | 0.424424 | 2_3:+49287877 | Msa0296220:CDS |
| TTGTGTGTCATCAATTTCCA+TGG | 0.427694 | 2_3:-49287291 | None:intergenic |
| AGAAAGCAGTTATGTGTCAT+AGG | 0.437124 | 2_3:+49287639 | Msa0296220:CDS |
| TTGTTCATGCTTATCTATGA+AGG | 0.440092 | 2_3:-49287585 | None:intergenic |
| AAATAACAACCTTGAGGTCC+AGG | 0.452077 | 2_3:-49286265 | None:intergenic |
| TAGAAGTTCTCGAAGAGAAG+TGG | 0.456535 | 2_3:-49286239 | None:intergenic |
| TTTCCAAGGAAATGACAAAC+AGG | 0.462441 | 2_3:-49287842 | None:intergenic |
| CTAGCTAATTAAGCTAGAGT+TGG | 0.466469 | 2_3:+49288016 | Msa0296220:three_prime_UTR |
| AACCTTATGGTGTTTATACA+TGG | 0.471062 | 2_3:+49287396 | Msa0296220:CDS |
| CTTCTTCAGGCAGTGATGCA+TGG | 0.473820 | 2_3:-49286180 | None:intergenic |
| GAAGTGGGAATGGGAGTGTT+GGG | 0.474967 | 2_3:-49286223 | None:intergenic |
| ACACCATAAGGTTGTGCAAA+GGG | 0.481077 | 2_3:-49287386 | None:intergenic |
| TTAGGTTTGGACAATGCCTA+TGG | 0.494021 | 2_3:+49287890 | Msa0296220:CDS |
| TTCTCGAAGAGAAGTGGGAA+TGG | 0.495855 | 2_3:-49286233 | None:intergenic |
| CTTCGAGAACTTCTAAAGCC+TGG | 0.497324 | 2_3:+49286247 | Msa0296220:CDS |
| GGAGTACTCTCCATCATGGT+TGG | 0.497653 | 2_3:+49287931 | Msa0296220:exon |
| ATCCATGTATAAACACCATA+AGG | 0.501910 | 2_3:-49287398 | None:intergenic |
| AGAAGTGGGAATGGGAGTGT+TGG | 0.505103 | 2_3:-49286224 | None:intergenic |
| GTTCCATCATTAGCCACCAA+TGG | 0.510862 | 2_3:-49287725 | None:intergenic |
| TCATAGGTTGAATTTCCAAA+AGG | 0.512621 | 2_3:+49287655 | Msa0296220:CDS |
| CAGATTATGAAAGCTGATCC+TGG | 0.522799 | 2_3:+49287812 | Msa0296220:CDS |
| ATAAAAGAGCCTTATTTCCA+AGG | 0.523232 | 2_3:-49287856 | None:intergenic |
| AAATCCGATTAATGTTCCTA+AGG | 0.524830 | 2_3:-49287519 | None:intergenic |
| GTTCCATTGGTGGCTAATGA+TGG | 0.535070 | 2_3:+49287722 | Msa0296220:CDS |
| TGTGTGTCATCAATTTCCAT+GGG | 0.537514 | 2_3:-49287290 | None:intergenic |
| TCTCGAAGAGAAGTGGGAAT+GGG | 0.548515 | 2_3:-49286232 | None:intergenic |
| TTTAGGAGTACTCTCCATCA+TGG | 0.550450 | 2_3:+49287927 | Msa0296220:exon |
| CTTCTAAAGCCTGGACCTCA+AGG | 0.560362 | 2_3:+49286256 | Msa0296220:CDS |
| AACAGCAACATTGGCACCAT+AGG | 0.567015 | 2_3:-49287906 | None:intergenic |
| AGAAGTTCTCGAAGAGAAGT+GGG | 0.572137 | 2_3:-49286238 | None:intergenic |
| GTAAAGAAAGCAGCTGCAGA+AGG | 0.576977 | 2_3:+49287473 | Msa0296220:CDS |
| ATTTATGTTACACAGTCCCA+TGG | 0.579361 | 2_3:-49287959 | None:intergenic |
| ATCATGGTTGGACACACCAT+GGG | 0.579868 | 2_3:+49287943 | Msa0296220:three_prime_UTR |
| GTACTCCTAAACAGCAACAT+TGG | 0.581094 | 2_3:-49287915 | None:intergenic |
| AGAAGGATACACATTTAATG+AGG | 0.587845 | 2_3:+49287445 | Msa0296220:CDS |
| CATCATGGTTGGACACACCA+TGG | 0.594647 | 2_3:+49287942 | Msa0296220:three_prime_UTR |
| TGTCATCAATTTCCATGGGG+TGG | 0.605445 | 2_3:-49287286 | None:intergenic |
| GAACTGAAATGAAAACGAGA+AGG | 0.613747 | 2_3:-49285780 | None:intergenic |
| TGACAAACAGGTTTACTACC+AGG | 0.616609 | 2_3:-49287830 | None:intergenic |
| CATGGTGTGTCCAACCATGA+TGG | 0.616911 | 2_3:-49287941 | None:intergenic |
| AACACCATAAGGTTGTGCAA+AGG | 0.645055 | 2_3:-49287387 | None:intergenic |
| TGAAATTGATGACCACCCCA+TGG | 0.663021 | 2_3:+49287274 | Msa0296220:CDS |
| GTGTGTCATCAATTTCCATG+GGG | 0.716189 | 2_3:-49287289 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATCCTTTATTAATTTTAT+TGG | + | chr2_3:49286472-49286491 | Msa0296220:intron | 10.0% |
| !!! | CATTTAAAATATAAAAAAGT+TGG | + | chr2_3:49286725-49286744 | Msa0296220:intron | 10.0% |
| !! | ACATTATTAATTTATTTGTT+AGG | - | chr2_3:49286966-49286985 | None:intergenic | 10.0% |
| !!! | ATGTTTTAATATAATGAAAA+TGG | + | chr2_3:49288100-49288119 | Msa0296220:three_prime_UTR | 10.0% |
| !! | ATCACAATATTAATTACTAT+AGG | - | chr2_3:49286367-49286386 | None:intergenic | 15.0% |
| !! | TGATCCAATAAAATTAATAA+AGG | - | chr2_3:49286479-49286498 | None:intergenic | 15.0% |
| !! | ATCGATATTTACTTTATATT+TGG | + | chr2_3:49286690-49286709 | Msa0296220:intron | 15.0% |
| !!! | TATTTTAAATGTATTAGGTT+GGG | - | chr2_3:49286716-49286735 | None:intergenic | 15.0% |
| !!! | ATATTTTAAATGTATTAGGT+TGG | - | chr2_3:49286717-49286736 | None:intergenic | 15.0% |
| !! | TATTTGTCATATAAATTGAA+TGG | - | chr2_3:49286857-49286876 | None:intergenic | 15.0% |
| !! | TTTATTAGTTAAAATTCAGA+TGG | + | chr2_3:49287094-49287113 | Msa0296220:intron | 15.0% |
| !! | TTATTAGTTAAAATTCAGAT+GGG | + | chr2_3:49287095-49287114 | Msa0296220:intron | 15.0% |
| !!! | TAACACATATTCTTTTTTAT+TGG | - | chr2_3:49287174-49287193 | None:intergenic | 15.0% |
| !! | AAAGAATATGTGTTAAATTA+TGG | + | chr2_3:49287179-49287198 | Msa0296220:intron | 15.0% |
| !! | AAAAAAAAATATCTACAATG+AGG | - | chr2_3:49288133-49288152 | None:intergenic | 15.0% |
| !! | TTAAACAACAACCTAAAATA+TGG | + | chr2_3:49285902-49285921 | Msa0296220:intron | 20.0% |
| !!! | TACTTTAATTGCCATATTTT+AGG | - | chr2_3:49285916-49285935 | None:intergenic | 20.0% |
| !! | ATTATTACTTACATATGTTG+AGG | + | chr2_3:49285952-49285971 | Msa0296220:intron | 20.0% |
| !! | TTATTACTTACATATGTTGA+GGG | + | chr2_3:49285953-49285972 | Msa0296220:intron | 20.0% |
| !! | AAAATTAAATAACAACCTTG+AGG | - | chr2_3:49286274-49286293 | None:intergenic | 20.0% |
| !!! | TCAGAAAAGGTAAATTTTAT+GGG | + | chr2_3:49286414-49286433 | Msa0296220:intron | 20.0% |
| !! | TTATATGACAAATAATTCCA+AGG | + | chr2_3:49286863-49286882 | Msa0296220:intron | 20.0% |
| !! | TATATGACAAATAATTCCAA+GGG | + | chr2_3:49286864-49286883 | Msa0296220:intron | 20.0% |
| !!! | AATTTATTTGTTAGGATGAA+AGG | - | chr2_3:49286958-49286977 | None:intergenic | 20.0% |
| !! | TCTCTCAAGTTATATATTAT+TGG | - | chr2_3:49286992-49287011 | None:intergenic | 20.0% |
| !!! | TATTTTAAACCCATCTATTA+TGG | + | chr2_3:49287242-49287261 | Msa0296220:intron | 20.0% |
| !!! | GTTCATAGAAAAATGTTTTT+GGG | - | chr2_3:49287319-49287338 | None:intergenic | 20.0% |
| !!! | TGTTCATAGAAAAATGTTTT+TGG | - | chr2_3:49287320-49287339 | None:intergenic | 20.0% |
| !! | ATTAAAGACATTGAAAAAGA+AGG | + | chr2_3:49287428-49287447 | Msa0296220:CDS | 20.0% |
| !!! | TTTTATTGTCATGAAATTCA+TGG | + | chr2_3:49287683-49287702 | Msa0296220:CDS | 20.0% |
| ! | TAAGTTTATAGTACATCAGT+TGG | - | chr2_3:49285885-49285904 | None:intergenic | 25.0% |
| ! | GTAAGAAATAAACTCAGAAA+AGG | + | chr2_3:49286401-49286420 | Msa0296220:intron | 25.0% |
| !! | CTCAGAAAAGGTAAATTTTA+TGG | + | chr2_3:49286413-49286432 | Msa0296220:intron | 25.0% |
| ! | AGAGATGAAAAACTAATAAG+GGG | - | chr2_3:49286530-49286549 | None:intergenic | 25.0% |
| ! | CAGAGATGAAAAACTAATAA+GGG | - | chr2_3:49286531-49286550 | None:intergenic | 25.0% |
| ! | TCAGAGATGAAAAACTAATA+AGG | - | chr2_3:49286532-49286551 | None:intergenic | 25.0% |
| ! | ACAAAATTAATACTCTCCTT+CGG | - | chr2_3:49286582-49286601 | None:intergenic | 25.0% |
| !!! | AAGGAGAGTATTAATTTTGT+AGG | + | chr2_3:49286582-49286601 | Msa0296220:intron | 25.0% |
| !! | AAATTTTGTGCAAAATCCTT+AGG | + | chr2_3:49287503-49287522 | Msa0296220:CDS | 25.0% |
| ! | AAATCCTTAGGAACATTAAT+CGG | + | chr2_3:49287515-49287534 | Msa0296220:CDS | 25.0% |
| !! | GACAATAAAATACAACCTTT+TGG | - | chr2_3:49287673-49287692 | None:intergenic | 25.0% |
| !! | TTTCGTGAGTAAATGTTTTT+AGG | + | chr2_3:49288150-49288169 | Msa0296220:three_prime_UTR | 25.0% |
| !!! | TTCGTGAGTAAATGTTTTTA+GGG | + | chr2_3:49288151-49288170 | Msa0296220:three_prime_UTR | 25.0% |
| !!! | TTTTTAGGGGTAATTATGTT+TGG | + | chr2_3:49288165-49288184 | Msa0296220:three_prime_UTR | 25.0% |
| !!! | TTTTAGGGGTAATTATGTTT+GGG | + | chr2_3:49288166-49288185 | Msa0296220:three_prime_UTR | 25.0% |
| ! | GTCTTATCAATGATAATTTC+AGG | + | chr2_3:49288188-49288207 | Msa0296220:three_prime_UTR | 25.0% |
| AAGAGTTCTTAAGTGTTTAG+AGG | - | chr2_3:49285850-49285869 | None:intergenic | 30.0% | |
| TCTAAACACTTAAGAACTCT+TGG | + | chr2_3:49285849-49285868 | Msa0296220:intron | 30.0% | |
| AGGTTGACAAATTTGAATGT+TGG | - | chr2_3:49286612-49286631 | None:intergenic | 30.0% | |
| ! | TGACTCTATAATTTTTGCCT+AGG | + | chr2_3:49286788-49286807 | Msa0296220:intron | 30.0% |
| TAAATTTAGAAAGAGACCCT+TGG | - | chr2_3:49286883-49286902 | None:intergenic | 30.0% | |
| ! | GAGAGATGTTATGATTTTTC+TGG | + | chr2_3:49287008-49287027 | Msa0296220:intron | 30.0% |
| TCATGTGGGTTTCATAAATT+TGG | - | chr2_3:49287125-49287144 | None:intergenic | 30.0% | |
| TTTATGAAACCCACATGATT+TGG | + | chr2_3:49287127-49287146 | Msa0296220:intron | 30.0% | |
| TATGAACATGAACTTTATCC+TGG | + | chr2_3:49287332-49287351 | Msa0296220:CDS | 30.0% | |
| AACCTTATGGTGTTTATACA+TGG | + | chr2_3:49287396-49287415 | Msa0296220:CDS | 30.0% | |
| ATCCATGTATAAACACCATA+AGG | - | chr2_3:49287401-49287420 | None:intergenic | 30.0% | |
| AGAAGGATACACATTTAATG+AGG | + | chr2_3:49287445-49287464 | Msa0296220:CDS | 30.0% | |
| AAATCCGATTAATGTTCCTA+AGG | - | chr2_3:49287522-49287541 | None:intergenic | 30.0% | |
| TTGTTCATGCTTATCTATGA+AGG | - | chr2_3:49287588-49287607 | None:intergenic | 30.0% | |
| ! | TCATAGGTTGAATTTCCAAA+AGG | + | chr2_3:49287655-49287674 | Msa0296220:CDS | 30.0% |
| ! | TTGTCATTTCCTTGGAAATA+AGG | + | chr2_3:49287847-49287866 | Msa0296220:CDS | 30.0% |
| !! | ATAAAAGAGCCTTATTTCCA+AGG | - | chr2_3:49287859-49287878 | None:intergenic | 30.0% |
| ! | TTGGAAATAAGGCTCTTTTA+TGG | + | chr2_3:49287858-49287877 | Msa0296220:CDS | 30.0% |
| ! | TGGAAATAAGGCTCTTTTAT+GGG | + | chr2_3:49287859-49287878 | Msa0296220:CDS | 30.0% |
| ! | CTTTTATGGGTACCTAATTT+AGG | + | chr2_3:49287872-49287891 | Msa0296220:CDS | 30.0% |
| !!! | TAGTTTTATGTACCCTAAAG+AGG | + | chr2_3:49288047-49288066 | Msa0296220:three_prime_UTR | 30.0% |
| !!! | TCGTGAGTAAATGTTTTTAG+GGG | + | chr2_3:49288152-49288171 | Msa0296220:three_prime_UTR | 30.0% |
| GAACTGAAATGAAAACGAGA+AGG | - | chr2_3:49285783-49285802 | None:intergenic | 35.0% | |
| !!! | GAAATGAAAGGTTTTAGAGC+AGG | - | chr2_3:49285821-49285840 | None:intergenic | 35.0% |
| !! | TAGAGGATGATGGAAATGAA+AGG | - | chr2_3:49285833-49285852 | None:intergenic | 35.0% |
| CTTAAGTGTTTAGAGGATGA+TGG | - | chr2_3:49285843-49285862 | None:intergenic | 35.0% | |
| ACTGCCTGAAGAAGAATATT+GGG | + | chr2_3:49286189-49286208 | Msa0296220:CDS | 35.0% | |
| AAGAATATTGGGAAGCTGTT+TGG | + | chr2_3:49286200-49286219 | Msa0296220:CDS | 35.0% | |
| !! | TCTCTGAAGCTGTAATATAG+TGG | + | chr2_3:49286545-49286564 | Msa0296220:intron | 35.0% |
| !! | TTGTTAGGATGAAAGGTGTT+TGG | - | chr2_3:49286951-49286970 | None:intergenic | 35.0% |
| TGTGGGTTTCATAAATTTGG+AGG | - | chr2_3:49287122-49287141 | None:intergenic | 35.0% | |
| !! | TATGGTGTCACAGTCAAAAT+TGG | + | chr2_3:49287197-49287216 | Msa0296220:intron | 35.0% |
| TGTGTGTCATCAATTTCCAT+GGG | - | chr2_3:49287293-49287312 | None:intergenic | 35.0% | |
| TTGTGTGTCATCAATTTCCA+TGG | - | chr2_3:49287294-49287313 | None:intergenic | 35.0% | |
| GGATTTGCAATTTCTAAGCT+TGG | + | chr2_3:49287536-49287555 | Msa0296220:CDS | 35.0% | |
| ATAGAGTCAGTGCAAAATCT+TGG | + | chr2_3:49287614-49287633 | Msa0296220:CDS | 35.0% | |
| AGAAAGCAGTTATGTGTCAT+AGG | + | chr2_3:49287639-49287658 | Msa0296220:CDS | 35.0% | |
| ! | TCATGGAACAACAGCTTTTA+TGG | + | chr2_3:49287700-49287719 | Msa0296220:CDS | 35.0% |
| ! | AACAGCTTTTATGGTTCCAT+TGG | + | chr2_3:49287709-49287728 | Msa0296220:CDS | 35.0% |
| ! | AAACCTGTTTGTCATTTCCT+TGG | + | chr2_3:49287839-49287858 | Msa0296220:CDS | 35.0% |
| TTTCCAAGGAAATGACAAAC+AGG | - | chr2_3:49287845-49287864 | None:intergenic | 35.0% | |
| ! | ATGGGTACCTAATTTAGGTT+TGG | + | chr2_3:49287877-49287896 | Msa0296220:CDS | 35.0% |
| GCATTGTCCAAACCTAAATT+AGG | - | chr2_3:49287887-49287906 | None:intergenic | 35.0% | |
| ATTTATGTTACACAGTCCCA+TGG | - | chr2_3:49287962-49287981 | None:intergenic | 35.0% | |
| CTAGCTAATTAAGCTAGAGT+TGG | + | chr2_3:49288016-49288035 | Msa0296220:three_prime_UTR | 35.0% | |
| ACAAAGATTGTGCCTCTTTA+GGG | - | chr2_3:49288062-49288081 | None:intergenic | 35.0% | |
| AACAAAGATTGTGCCTCTTT+AGG | - | chr2_3:49288063-49288082 | None:intergenic | 35.0% | |
| ACTTACATATGTTGAGGGTG+TGG | + | chr2_3:49285958-49285977 | Msa0296220:intron | 40.0% | |
| ! | CTTACATATGTTGAGGGTGT+GGG | + | chr2_3:49285959-49285978 | Msa0296220:intron | 40.0% |
| ! | TTACATATGTTGAGGGTGTG+GGG | + | chr2_3:49285960-49285979 | Msa0296220:intron | 40.0% |
| CACTGCCTGAAGAAGAATAT+TGG | + | chr2_3:49286188-49286207 | Msa0296220:CDS | 40.0% | |
| GCTTCCCAATATTCTTCTTC+AGG | - | chr2_3:49286196-49286215 | None:intergenic | 40.0% | |
| AGAAGTTCTCGAAGAGAAGT+GGG | - | chr2_3:49286241-49286260 | None:intergenic | 40.0% | |
| TAGAAGTTCTCGAAGAGAAG+TGG | - | chr2_3:49286242-49286261 | None:intergenic | 40.0% | |
| AAATAACAACCTTGAGGTCC+AGG | - | chr2_3:49286268-49286287 | None:intergenic | 40.0% | |
| AGTGGTATTGTTGAATCCGA+AGG | + | chr2_3:49286563-49286582 | Msa0296220:intron | 40.0% | |
| ! | CCAGGAATTTTGTAAAGCCT+AGG | - | chr2_3:49286808-49286827 | None:intergenic | 40.0% |
| CCTAGGCTTTACAAAATTCC+TGG | + | chr2_3:49286805-49286824 | Msa0296220:intron | 40.0% | |
| TACAGCACCATACTGTACAT+CGG | + | chr2_3:49286917-49286936 | Msa0296220:intron | 40.0% | |
| TGAGTCTCACCAAATCATGT+GGG | - | chr2_3:49287139-49287158 | None:intergenic | 40.0% | |
| ATGAGTCTCACCAAATCATG+TGG | - | chr2_3:49287140-49287159 | None:intergenic | 40.0% | |
| AAACCCATCTATTATGGCAC+AGG | + | chr2_3:49287248-49287267 | Msa0296220:intron | 40.0% | |
| ACACCTGTGCCATAATAGAT+GGG | - | chr2_3:49287254-49287273 | None:intergenic | 40.0% | |
| AACACCTGTGCCATAATAGA+TGG | - | chr2_3:49287255-49287274 | None:intergenic | 40.0% | |
| GTGTGTCATCAATTTCCATG+GGG | - | chr2_3:49287292-49287311 | None:intergenic | 40.0% | |
| !! | TGCACTTTCATTGTTTTGCC+AGG | - | chr2_3:49287353-49287372 | None:intergenic | 40.0% |
| ACACCATAAGGTTGTGCAAA+GGG | - | chr2_3:49287389-49287408 | None:intergenic | 40.0% | |
| AACACCATAAGGTTGTGCAA+AGG | - | chr2_3:49287390-49287409 | None:intergenic | 40.0% | |
| ! | AGCTTTTATGGTTCCATTGG+TGG | + | chr2_3:49287712-49287731 | Msa0296220:CDS | 40.0% |
| GTTTGTCATGCTGATACTTC+AGG | + | chr2_3:49287767-49287786 | Msa0296220:CDS | 40.0% | |
| CAGATTATGAAAGCTGATCC+TGG | + | chr2_3:49287812-49287831 | Msa0296220:CDS | 40.0% | |
| TGACAAACAGGTTTACTACC+AGG | - | chr2_3:49287833-49287852 | None:intergenic | 40.0% | |
| TTAGGTTTGGACAATGCCTA+TGG | + | chr2_3:49287890-49287909 | Msa0296220:CDS | 40.0% | |
| GTACTCCTAAACAGCAACAT+TGG | - | chr2_3:49287918-49287937 | None:intergenic | 40.0% | |
| !! | TTTAGGAGTACTCTCCATCA+TGG | + | chr2_3:49287927-49287946 | Msa0296220:exon | 40.0% |
| ! | TACATATGTTGAGGGTGTGG+GGG | + | chr2_3:49285961-49285980 | Msa0296220:intron | 45.0% |
| TCTCGAAGAGAAGTGGGAAT+GGG | - | chr2_3:49286235-49286254 | None:intergenic | 45.0% | |
| TTCTCGAAGAGAAGTGGGAA+TGG | - | chr2_3:49286236-49286255 | None:intergenic | 45.0% | |
| !! | CTTCGAGAACTTCTAAAGCC+TGG | + | chr2_3:49286247-49286266 | Msa0296220:CDS | 45.0% |
| ACCATACTGTACATCGGTAG+AGG | + | chr2_3:49286923-49286942 | Msa0296220:intron | 45.0% | |
| TCCTCTACCGATGTACAGTA+TGG | - | chr2_3:49286927-49286946 | None:intergenic | 45.0% | |
| ! | TGAAATTGATGACCACCCCA+TGG | + | chr2_3:49287274-49287293 | Msa0296220:CDS | 45.0% |
| TGTCATCAATTTCCATGGGG+TGG | - | chr2_3:49287289-49287308 | None:intergenic | 45.0% | |
| GTAAAGAAAGCAGCTGCAGA+AGG | + | chr2_3:49287473-49287492 | Msa0296220:CDS | 45.0% | |
| ! | GTTCCATTGGTGGCTAATGA+TGG | + | chr2_3:49287722-49287741 | Msa0296220:CDS | 45.0% |
| GTTCCATCATTAGCCACCAA+TGG | - | chr2_3:49287728-49287747 | None:intergenic | 45.0% | |
| AACAGCAACATTGGCACCAT+AGG | - | chr2_3:49287909-49287928 | None:intergenic | 45.0% | |
| !! | TGGTGCCAATGTTGCTGTTT+AGG | + | chr2_3:49287910-49287929 | Msa0296220:CDS | 45.0% |
| ATCATGGTTGGACACACCAT+GGG | + | chr2_3:49287943-49287962 | Msa0296220:three_prime_UTR | 45.0% | |
| !!! | TTTTATATTTTAAATGTATT+AGG | - | chr2_3:49286721-49286740 | None:intergenic | 5.0% |
| !!! | ATTTAAAATATAAAAAAGTT+GGG | + | chr2_3:49286726-49286745 | Msa0296220:intron | 5.0% |
| ! | ACATATGTTGAGGGTGTGGG+GGG | + | chr2_3:49285962-49285981 | Msa0296220:intron | 50.0% |
| CTTCTTCAGGCAGTGATGCA+TGG | - | chr2_3:49286183-49286202 | None:intergenic | 50.0% | |
| !! | GAAGTGGGAATGGGAGTGTT+GGG | - | chr2_3:49286226-49286245 | None:intergenic | 50.0% |
| ! | AGAAGTGGGAATGGGAGTGT+TGG | - | chr2_3:49286227-49286246 | None:intergenic | 50.0% |
| !! | CTTCTAAAGCCTGGACCTCA+AGG | + | chr2_3:49286256-49286275 | Msa0296220:CDS | 50.0% |
| AAAATTCCTGGCTCCACCAC+TGG | + | chr2_3:49286817-49286836 | Msa0296220:intron | 50.0% | |
| CGTCCCTTTGCACAACCTTA+TGG | + | chr2_3:49287383-49287402 | Msa0296220:CDS | 50.0% | |
| ! | GGAGTACTCTCCATCATGGT+TGG | + | chr2_3:49287931-49287950 | Msa0296220:exon | 50.0% |
| CATGGTGTGTCCAACCATGA+TGG | - | chr2_3:49287944-49287963 | None:intergenic | 50.0% | |
| CATCATGGTTGGACACACCA+TGG | + | chr2_3:49287942-49287961 | Msa0296220:three_prime_UTR | 50.0% | |
| GATGTGCAGCTTGCACTTGC+AGG | + | chr2_3:49286151-49286170 | Msa0296220:intron | 55.0% | |
| TGTCAACCTCTGCTGCAGCC+AGG | + | chr2_3:49286623-49286642 | Msa0296220:intron | 60.0% | |
| GTCAACCTCTGCTGCAGCCA+GGG | + | chr2_3:49286624-49286643 | Msa0296220:intron | 60.0% | |
| TCAACCTCTGCTGCAGCCAG+GGG | + | chr2_3:49286625-49286644 | Msa0296220:intron | 60.0% | |
| ATTGAGCCCAGACGAGTGCC+CGG | - | chr2_3:49286672-49286691 | None:intergenic | 60.0% | |
| ! | TGTTGAGGGTGTGGGGGGTG+TGG | + | chr2_3:49285967-49285986 | Msa0296220:intron | 65.0% |
| TTGAGCCCAGACGAGTGCCC+GGG | - | chr2_3:49286671-49286690 | None:intergenic | 65.0% | |
| CCTACAGCTGCAGCCAGTGG+TGG | - | chr2_3:49286833-49286852 | None:intergenic | 65.0% | |
| ! | CCACCACTGGCTGCAGCTGT+AGG | + | chr2_3:49286830-49286849 | Msa0296220:intron | 65.0% |
| GGTCCTACAGCTGCAGCCAG+TGG | - | chr2_3:49286836-49286855 | None:intergenic | 65.0% | |
| TTCGCCCCTGGCTGCAGCAG+AGG | - | chr2_3:49286632-49286651 | None:intergenic | 70.0% | |
| TCTGCTGCAGCCAGGGGCGA+AGG | + | chr2_3:49286631-49286650 | Msa0296220:intron | 70.0% | |
| ! | CTGCAGCCAGTGGTGGAGCC+AGG | - | chr2_3:49286826-49286845 | None:intergenic | 70.0% |
| !! | CCAGGGGCGAAGGCACCACC+CGG | + | chr2_3:49286641-49286660 | Msa0296220:intron | 75.0% |
| ! | AAGGCACCACCCGGCGAGCC+CGG | + | chr2_3:49286650-49286669 | Msa0296220:intron | 75.0% |
| AGACGAGTGCCCGGGCTCGC+CGG | - | chr2_3:49286663-49286682 | None:intergenic | 75.0% | |
| GCGAGCCCGGGCACTCGTCT+GGG | + | chr2_3:49286663-49286682 | Msa0296220:intron | 75.0% | |
| ! | CCGGGTGGTGCCTTCGCCCC+TGG | - | chr2_3:49286644-49286663 | None:intergenic | 80.0% |
| ! | AGGCACCACCCGGCGAGCCC+GGG | + | chr2_3:49286651-49286670 | Msa0296220:intron | 80.0% |
| ! | GACGAGTGCCCGGGCTCGCC+GGG | - | chr2_3:49286662-49286681 | None:intergenic | 80.0% |
| ! | GGCGAGCCCGGGCACTCGTC+TGG | + | chr2_3:49286662-49286681 | Msa0296220:intron | 80.0% |
| ! | GAGTGCCCGGGCTCGCCGGG+TGG | - | chr2_3:49286659-49286678 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 49285761 | 49288229 | 49285761 | ID=Msa0296220;Name=Msa0296220 |
| chr2_3 | mRNA | 49285761 | 49288229 | 49285761 | ID=Msa0296220-mRNA-1;Parent=Msa0296220;Name=Msa0296220-mRNA-1;_AED=0.01;_eAED=0.01;_QI=5|1|1|1|1|1|3|298|273 |
| chr2_3 | exon | 49285761 | 49285807 | 49285761 | ID=Msa0296220-mRNA-1:exon:15523;Parent=Msa0296220-mRNA-1 |
| chr2_3 | exon | 49286160 | 49286277 | 49286160 | ID=Msa0296220-mRNA-1:exon:15524;Parent=Msa0296220-mRNA-1 |
| chr2_3 | exon | 49287270 | 49288229 | 49287270 | ID=Msa0296220-mRNA-1:exon:15525;Parent=Msa0296220-mRNA-1 |
| chr2_3 | five_prime_UTR | 49285761 | 49285765 | 49285761 | ID=Msa0296220-mRNA-1:five_prime_utr;Parent=Msa0296220-mRNA-1 |
| chr2_3 | CDS | 49285766 | 49285807 | 49285766 | ID=Msa0296220-mRNA-1:cds;Parent=Msa0296220-mRNA-1 |
| chr2_3 | CDS | 49286160 | 49286277 | 49286160 | ID=Msa0296220-mRNA-1:cds;Parent=Msa0296220-mRNA-1 |
| chr2_3 | CDS | 49287270 | 49287931 | 49287270 | ID=Msa0296220-mRNA-1:cds;Parent=Msa0296220-mRNA-1 |
| chr2_3 | three_prime_UTR | 49287932 | 49288229 | 49287932 | ID=Msa0296220-mRNA-1:three_prime_utr;Parent=Msa0296220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
