Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300300 | XP_024632536.1 | 91.534 | 189 | 10 | 4 | 1 | 188 | 1 | 184 | 2.60e-94 | 284 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0220970 | Msa0300300 | 0.925527 | 1.626074e-90 | -8.615850e-47 |
| Msa0262420 | Msa0300300 | 0.839740 | 1.322144e-57 | -8.615850e-47 |
| Msa0300300 | Msa0374250 | -0.819459 | 1.148601e-52 | -8.615850e-47 |
| Msa0300300 | Msa0467920 | 0.802078 | 6.655096e-49 | -8.615850e-47 |
| Msa0300300 | Msa0469790 | -0.809015 | 2.331299e-50 | -8.615850e-47 |
| Msa0300300 | Msa0469820 | -0.820345 | 7.204135e-53 | -8.615850e-47 |
| Msa0300300 | Msa1208890 | 0.801852 | 7.404258e-49 | -8.615850e-47 |
| Msa0300300 | Msa1433890 | 0.947122 | 1.241892e-105 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300300 | MtrunA17_Chr2g0325031 | 91.534 | 189 | 10 | 4 | 1 | 188 | 1 | 184 | 2.39e-98 | 284 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300300 | AT3G54680.1 | 36.036 | 222 | 81 | 7 | 4 | 183 | 6 | 208 | 1.37e-13 | 67.8 |
Find 92 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGCAAACAAACTGGTTTA+TGG | 0.217646 | 2_3:-55652980 | Msa0300300:exon |
| GAGAGGATGAGGAAGGTTTC+TGG | 0.226601 | 2_3:-55652448 | Msa0300300:CDS |
| TGCCGAGGGAGGAGTGTCTT+AGG | 0.240149 | 2_3:-55652501 | Msa0300300:CDS |
| CTTTGAAGCGTTGTTGGTTT+TGG | 0.257075 | 2_3:+55652888 | None:intergenic |
| TCTTTCTCGCCGTTCAAAAC+CGG | 0.266026 | 2_3:+55652583 | None:intergenic |
| TTCTGGGTCTGATACGGGTT+TGG | 0.273589 | 2_3:-55652431 | Msa0300300:CDS |
| TCTGGGTCTGATACGGGTTT+GGG | 0.284401 | 2_3:-55652430 | Msa0300300:CDS |
| TGTTGGATCGGGTTGGGTTT+GGG | 0.289585 | 2_3:+55652718 | None:intergenic |
| GTAGATGTGGTTGAAGTTAA+TGG | 0.296091 | 2_3:+55652936 | None:intergenic |
| TTGTTGGATCGGGTTGGGTT+TGG | 0.297089 | 2_3:+55652717 | None:intergenic |
| TCATAATCATCCACTAGAAT+TGG | 0.305471 | 2_3:+55652400 | None:intergenic |
| ATGTGAAATGGGTTTGGGTG+TGG | 0.311571 | 2_3:+55652765 | None:intergenic |
| TTGGGCTGTGATTGTGCGGG+TGG | 0.336985 | 2_3:+55652736 | None:intergenic |
| GGGTGGGGTTGGATGTGAAA+TGG | 0.337055 | 2_3:+55652753 | None:intergenic |
| GGTTGGATGTGAAATGGGTT+TGG | 0.349429 | 2_3:+55652759 | None:intergenic |
| GGTGGGGTTGGATGTGAAAT+GGG | 0.353408 | 2_3:+55652754 | None:intergenic |
| TTCAATCTCGCTTCGTCCGT+TGG | 0.354260 | 2_3:-55652644 | Msa0300300:CDS |
| CTTTCTCGCCGTTCAAAACC+GGG | 0.355045 | 2_3:+55652584 | None:intergenic |
| TCGCCGTTCAAAACCGGGTT+CGG | 0.362760 | 2_3:+55652589 | None:intergenic |
| CCTCTCATTCCCACCAGACT+TGG | 0.365997 | 2_3:+55652465 | None:intergenic |
| AATGGGTTTGGGTGTGGGTC+GGG | 0.366489 | 2_3:+55652771 | None:intergenic |
| GTTGGATGTGAAATGGGTTT+GGG | 0.371160 | 2_3:+55652760 | None:intergenic |
| TGTGCCGCCGCATCTTCGTC+CGG | 0.384242 | 2_3:-55652530 | Msa0300300:CDS |
| AAATGGGTTTGGGTGTGGGT+CGG | 0.388508 | 2_3:+55652770 | None:intergenic |
| AGATCGACCCCGGTCTGAAC+CGG | 0.391141 | 2_3:-55652674 | Msa0300300:CDS |
| GTACATATCCTTTGTCCCTC+TGG | 0.393138 | 2_3:-55650400 | Msa0300300:CDS |
| TCAATCTCGCTTCGTCCGTT+GGG | 0.395438 | 2_3:-55652643 | Msa0300300:CDS |
| TGTGATTGTGCGGGTGGGGT+TGG | 0.395841 | 2_3:+55652742 | None:intergenic |
| CTCTCTCTCTGCAAACAAAC+TGG | 0.399039 | 2_3:-55652987 | Msa0300300:five_prime_UTR |
| AGGATTCGACCATGTTTGTT+TGG | 0.403367 | 2_3:+55652802 | None:intergenic |
| TGGGCTGTGATTGTGCGGGT+GGG | 0.405665 | 2_3:+55652737 | None:intergenic |
| TGTTGTTGTTGGATCGGGTT+GGG | 0.408930 | 2_3:+55652712 | None:intergenic |
| GAAGGTTTCTGGGTCTGATA+CGG | 0.416702 | 2_3:-55652437 | Msa0300300:CDS |
| CGGGGTCGATCTGAAGAAAC+TGG | 0.419897 | 2_3:+55652685 | None:intergenic |
| GGACGAAGCGAGATTGAATC+TGG | 0.420282 | 2_3:+55652649 | None:intergenic |
| TGTGAAATGGGTTTGGGTGT+GGG | 0.421896 | 2_3:+55652766 | None:intergenic |
| GTGCCGCCGCATCTTCGTCC+GGG | 0.426862 | 2_3:-55652529 | Msa0300300:CDS |
| TCGAATCGGTTCTTTGTCGT+CGG | 0.435485 | 2_3:-55652620 | Msa0300300:CDS |
| AGGGTTCTTTGAAGCGTTGT+TGG | 0.436197 | 2_3:+55652882 | None:intergenic |
| GGGCTGTGATTGTGCGGGTG+GGG | 0.445432 | 2_3:+55652738 | None:intergenic |
| TCGTCCGGGGTTTGTGCCGA+GGG | 0.450244 | 2_3:-55652515 | Msa0300300:CDS |
| ATCTGGTCCCGGTTCAGACC+GGG | 0.453477 | 2_3:+55652666 | None:intergenic |
| GAAAACTTGCGACCCAAGTC+TGG | 0.455303 | 2_3:-55652478 | Msa0300300:CDS |
| AAACTGGAGGCTGTTGTTGT+TGG | 0.455936 | 2_3:+55652701 | None:intergenic |
| AGAGGATGAGGAAGGTTTCT+GGG | 0.456615 | 2_3:-55652447 | Msa0300300:CDS |
| CTGTTGTTGTTGGATCGGGT+TGG | 0.464894 | 2_3:+55652711 | None:intergenic |
| CATAATCATCCACTAGAATT+GGG | 0.469664 | 2_3:+55652401 | None:intergenic |
| CTTCGTCCGTTGGGTCGAAT+CGG | 0.470054 | 2_3:-55652634 | Msa0300300:CDS |
| CGAATCGGTTCTTTGTCGTC+GGG | 0.470387 | 2_3:-55652619 | Msa0300300:CDS |
| CTGGTGGGAATGAGAGGATG+AGG | 0.472518 | 2_3:-55652459 | Msa0300300:CDS |
| GGGTTTGGGCTGTGATTGTG+CGG | 0.473346 | 2_3:+55652732 | None:intergenic |
| CTAGTGGATGATTATGATCA+TGG | 0.476961 | 2_3:-55652394 | Msa0300300:intron |
| TCCCTAAGACACTCCTCCCT+CGG | 0.483826 | 2_3:+55652499 | None:intergenic |
| CTCTCATTCCCACCAGACTT+GGG | 0.484303 | 2_3:+55652466 | None:intergenic |
| GAGGCTGTTGTTGTTGGATC+GGG | 0.484796 | 2_3:+55652707 | None:intergenic |
| CGAGAAAGAGAAGAGTTTGC+CGG | 0.486001 | 2_3:-55652569 | Msa0300300:CDS |
| TCCTCCCTCGGCACAAACCC+CGG | 0.493049 | 2_3:+55652511 | None:intergenic |
| AAGGTTTCTGGGTCTGATAC+GGG | 0.495133 | 2_3:-55652436 | Msa0300300:CDS |
| AAGAAGAAGAAGAAAGAGAA+GGG | 0.496336 | 2_3:+55652863 | None:intergenic |
| GCAAGAAGAAGAAAGAAGGA+AGG | 0.498038 | 2_3:+55653064 | None:intergenic |
| TTCGTCCGGGGTTTGTGCCG+AGG | 0.499430 | 2_3:-55652516 | Msa0300300:CDS |
| GGAGGCTGTTGTTGTTGGAT+CGG | 0.500195 | 2_3:+55652706 | None:intergenic |
| AGAATACGAAGCGGAGGAGA+AGG | 0.505453 | 2_3:+55652837 | None:intergenic |
| GCCGAGGGAGGAGTGTCTTA+GGG | 0.509355 | 2_3:-55652500 | Msa0300300:CDS |
| AAATGCAAGAAGAAGAAAGA+AGG | 0.510872 | 2_3:+55653060 | None:intergenic |
| AATCTGGTCCCGGTTCAGAC+CGG | 0.519367 | 2_3:+55652665 | None:intergenic |
| AGCGAGATTGAATCTGGTCC+CGG | 0.526016 | 2_3:+55652655 | None:intergenic |
| GATCGACCCCGGTCTGAACC+GGG | 0.543684 | 2_3:-55652673 | Msa0300300:CDS |
| CCAAGTCTGGTGGGAATGAG+AGG | 0.547204 | 2_3:-55652465 | Msa0300300:CDS |
| AACTTGCGACCCAAGTCTGG+TGG | 0.558391 | 2_3:-55652475 | Msa0300300:CDS |
| GGTTTGGGCTGTGATTGTGC+GGG | 0.560295 | 2_3:+55652733 | None:intergenic |
| TGCCGCCGCATCTTCGTCCG+GGG | 0.561537 | 2_3:-55652528 | Msa0300300:CDS |
| TCCGGGGTTTGTGCCGAGGG+AGG | 0.569379 | 2_3:-55652512 | Msa0300300:CDS |
| TGGGAATGAGAGGATGAGGA+AGG | 0.570759 | 2_3:-55652455 | Msa0300300:CDS |
| CAGTTTCTTCAGATCGACCC+CGG | 0.573018 | 2_3:-55652684 | Msa0300300:CDS |
| AAGAGTTTGCCGGTGAAAAG+TGG | 0.574187 | 2_3:-55652559 | Msa0300300:CDS |
| TGGGTTTGTTATCGTAGATG+TGG | 0.577249 | 2_3:+55652923 | None:intergenic |
| GGGAATCGACCCAATTCTAG+TGG | 0.584437 | 2_3:-55652410 | Msa0300300:CDS |
| TCGACCATGTTTGTTTGGTG+CGG | 0.590196 | 2_3:+55652807 | None:intergenic |
| ACAAACCCCGGACGAAGATG+CGG | 0.590708 | 2_3:+55652523 | None:intergenic |
| TCTGGTCCCGGTTCAGACCG+GGG | 0.604345 | 2_3:+55652667 | None:intergenic |
| AAAATTGATGTCAGTTCCAG+AGG | 0.606435 | 2_3:+55650384 | None:intergenic |
| GTGTGGGTCGGGTTAAAACG+AGG | 0.611653 | 2_3:+55652782 | None:intergenic |
| TGTCAGTTCCAGAGGGACAA+AGG | 0.616152 | 2_3:+55650392 | None:intergenic |
| ACTTGCGACCCAAGTCTGGT+GGG | 0.619752 | 2_3:-55652474 | Msa0300300:CDS |
| AACCCCGGACGAAGATGCGG+CGG | 0.626124 | 2_3:+55652526 | None:intergenic |
| AACTGCAGAATACGAAGCGG+AGG | 0.631412 | 2_3:+55652831 | None:intergenic |
| AAAGAACCGATTCGACCCAA+CGG | 0.649372 | 2_3:+55652628 | None:intergenic |
| GTTTCCGCACCAAACAAACA+TGG | 0.657064 | 2_3:-55652811 | Msa0300300:CDS |
| AAATTGATGTCAGTTCCAGA+GGG | 0.658418 | 2_3:+55650385 | None:intergenic |
| GGTCGATCTGAAGAAACTGG+AGG | 0.681748 | 2_3:+55652688 | None:intergenic |
| GGAAACTGCAGAATACGAAG+CGG | 0.759361 | 2_3:+55652828 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATATGATGAAATTAAT+TGG | - | chr2_3:55651239-55651258 | Msa0300300:intron | 10.0% |
| !! | TAAATATGATGAAATTAATT+GGG | - | chr2_3:55651240-55651259 | Msa0300300:intron | 10.0% |
| !! | TTTCTAAATTAGTTAACATA+TGG | + | chr2_3:55651187-55651206 | None:intergenic | 15.0% |
| !! | GAATGATAACATTAATTATA+TGG | - | chr2_3:55651482-55651501 | Msa0300300:intron | 15.0% |
| !!! | TTTTTTTTTTTTTGGATGAA+GGG | + | chr2_3:55652488-55652507 | None:intergenic | 15.0% |
| !!! | TTTTCTTGATTGTTCTTTAA+TGG | - | chr2_3:55651111-55651130 | Msa0300300:intron | 20.0% |
| !!! | AGAATCACTTATATAGTTTT+AGG | - | chr2_3:55651345-55651364 | Msa0300300:intron | 20.0% |
| !! | CAACAAAATATCATATTTGA+TGG | + | chr2_3:55651540-55651559 | None:intergenic | 20.0% |
| !! | TATATTTCTTTAACATGATC+TGG | + | chr2_3:55652005-55652024 | None:intergenic | 20.0% |
| !! | ATAAAACCATATATACATGT+AGG | - | chr2_3:55652037-55652056 | Msa0300300:intron | 20.0% |
| !!! | TAGGAGTTATTTTTTGTTTA+GGG | - | chr2_3:55652056-55652075 | Msa0300300:intron | 20.0% |
| !! | GATTCTAAGTAAAACTAAAT+TGG | + | chr2_3:55652415-55652434 | None:intergenic | 20.0% |
| !!! | TTTAGTTTTACTTAGAATCA+TGG | - | chr2_3:55652416-55652435 | Msa0300300:CDS | 20.0% |
| !!! | GTTTTTTTTTTTTTGGATGA+AGG | + | chr2_3:55652489-55652508 | None:intergenic | 20.0% |
| !!! | CCATTCAGTTTTTTTTTTTT+TGG | + | chr2_3:55652496-55652515 | None:intergenic | 20.0% |
| !! | CCAAAAAAAAAAAAACTGAA+TGG | - | chr2_3:55652493-55652512 | Msa0300300:CDS | 20.0% |
| !! | TTGTATGTCTAATATGTAAA+AGG | - | chr2_3:55652714-55652733 | Msa0300300:CDS | 20.0% |
| !! | TGTATGTCTAATATGTAAAA+GGG | - | chr2_3:55652715-55652734 | Msa0300300:CDS | 20.0% |
| !!! | ATGAAATTGGTTTATGAAAT+TGG | - | chr2_3:55652783-55652802 | Msa0300300:CDS | 20.0% |
| !!! | TTTGCTTGTATTTTAGGATT+TGG | - | chr2_3:55651264-55651283 | Msa0300300:intron | 25.0% |
| !! | TGGAGGATTTTATTATTATG+TGG | - | chr2_3:55651284-55651303 | Msa0300300:intron | 25.0% |
| !!! | ATCACTTATATAGTTTTAGG+TGG | - | chr2_3:55651348-55651367 | Msa0300300:intron | 25.0% |
| ! | GATAAATAAGTATTCGTGAA+AGG | - | chr2_3:55651387-55651406 | Msa0300300:intron | 25.0% |
| ! | GTTCTAATAACTATGATATG+AGG | - | chr2_3:55651695-55651714 | Msa0300300:intron | 25.0% |
| ! | TAACTCCTTATATATCCATA+AGG | - | chr2_3:55651779-55651798 | Msa0300300:intron | 25.0% |
| !! | TAATTTTATTCCCAACCTTA+TGG | + | chr2_3:55651797-55651816 | None:intergenic | 25.0% |
| !! | TTATTTGATGACAAAACAGT+TGG | + | chr2_3:55651926-55651945 | None:intergenic | 25.0% |
| ! | AGAAATCTCTTGTACAAAAA+TGG | - | chr2_3:55651957-55651976 | Msa0300300:intron | 25.0% |
| ! | ATAACTCCTACATGTATATA+TGG | + | chr2_3:55652046-55652065 | None:intergenic | 25.0% |
| !!! | GTAGGAGTTATTTTTTGTTT+AGG | - | chr2_3:55652055-55652074 | Msa0300300:intron | 25.0% |
| !!! | AGGAGTTATTTTTTGTTTAG+GGG | - | chr2_3:55652057-55652076 | Msa0300300:intron | 25.0% |
| !!! | ATAATTTTAAATGGTTTGCC+CGG | - | chr2_3:55652592-55652611 | Msa0300300:CDS | 25.0% |
| ! | TGAAGAGTTTAACATCATAT+GGG | + | chr2_3:55652687-55652706 | None:intergenic | 25.0% |
| ! | ATGAAGAGTTTAACATCATA+TGG | + | chr2_3:55652688-55652707 | None:intergenic | 25.0% |
| ! | CTTAAATACGTGAATGAAAT+TGG | - | chr2_3:55652815-55652834 | Msa0300300:CDS | 25.0% |
| !! | AATAGGTTAATTCTTTTCAG+AGG | - | chr2_3:55652938-55652957 | Msa0300300:CDS | 25.0% |
| AAATGCAAGAAGAAGAAAGA+AGG | + | chr2_3:55650364-55650383 | None:intergenic | 30.0% | |
| AAGAAGAAGAAGAAAGAGAA+GGG | + | chr2_3:55650561-55650580 | None:intergenic | 30.0% | |
| !! | ACAAATTTACCACTTTTCAC+CGG | + | chr2_3:55650874-55650893 | None:intergenic | 30.0% |
| CATAATCATCCACTAGAATT+GGG | + | chr2_3:55651023-55651042 | None:intergenic | 30.0% | |
| TCATAATCATCCACTAGAAT+TGG | + | chr2_3:55651024-55651043 | None:intergenic | 30.0% | |
| !! | TTGGGATTTGCTTGTATTTT+AGG | - | chr2_3:55651258-55651277 | Msa0300300:intron | 30.0% |
| !!! | ATGTGTGTATCTTTTGAGTT+TGG | - | chr2_3:55651310-55651329 | Msa0300300:intron | 30.0% |
| !! | TGTTTCATGAGAGCATTTAA+AGG | - | chr2_3:55651450-55651469 | Msa0300300:intron | 30.0% |
| !! | GTTTCATGAGAGCATTTAAA+GGG | - | chr2_3:55651451-55651470 | Msa0300300:intron | 30.0% |
| !!! | GAGCATTTAAAGGGTATTTT+TGG | - | chr2_3:55651460-55651479 | Msa0300300:intron | 30.0% |
| !! | TTGCTTATATTTGAGTTGCA+AGG | - | chr2_3:55651557-55651576 | Msa0300300:intron | 30.0% |
| !! | TGCTTATATTTGAGTTGCAA+GGG | - | chr2_3:55651558-55651577 | Msa0300300:intron | 30.0% |
| TCCTTATATATCCATAAGGT+TGG | - | chr2_3:55651783-55651802 | Msa0300300:intron | 30.0% | |
| CCTTATATATCCATAAGGTT+GGG | - | chr2_3:55651784-55651803 | Msa0300300:intron | 30.0% | |
| CATAGTACTTCTTAAGAAGA+TGG | - | chr2_3:55651874-55651893 | Msa0300300:intron | 30.0% | |
| ! | GTTTTTATTGAGTGCATGTT+TGG | - | chr2_3:55652105-55652124 | Msa0300300:intron | 30.0% |
| ATTTGGTAAAAGCTACACTT+TGG | - | chr2_3:55652170-55652189 | Msa0300300:intron | 30.0% | |
| ACAGCTACACATGAAAATTA+CGG | + | chr2_3:55652219-55652238 | None:intergenic | 30.0% | |
| !! | TTTGGTTTGACAGTAAAGTT+TGG | + | chr2_3:55652249-55652268 | None:intergenic | 30.0% |
| !! | AAATAAGGGTGATGTTTTTG+TGG | - | chr2_3:55652283-55652302 | Msa0300300:intron | 30.0% |
| !! | AATAAGGGTGATGTTTTTGT+GGG | - | chr2_3:55652284-55652303 | Msa0300300:intron | 30.0% |
| !!! | TTTTTTTTTGGATGAAGGGT+GGG | + | chr2_3:55652484-55652503 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTGGATGAAGGG+TGG | + | chr2_3:55652485-55652504 | None:intergenic | 30.0% |
| !! | TAATTTTAAATGGTTTGCCC+GGG | - | chr2_3:55652593-55652612 | Msa0300300:CDS | 30.0% |
| CTTAAGTACGTGAATGAAAT+TGG | - | chr2_3:55652770-55652789 | Msa0300300:CDS | 30.0% | |
| TCTGCTGTTGAAATAAGATA+TGG | - | chr2_3:55652862-55652881 | Msa0300300:CDS | 30.0% | |
| TATCGTACAATTGCTTAGTA+AGG | + | chr2_3:55652890-55652909 | None:intergenic | 30.0% | |
| AAAATGTGTTTGTGCAGAAT+AGG | - | chr2_3:55652921-55652940 | Msa0300300:CDS | 30.0% | |
| ! | TGACATCAATTTTCACAAGA+TGG | - | chr2_3:55653047-55653066 | Msa0300300:five_prime_UTR | 30.0% |
| GAGAGAGAGAGAAATGAAAA+TGG | + | chr2_3:55650411-55650430 | None:intergenic | 35.0% | |
| ! | TCTGCAAACAAACTGGTTTA+TGG | - | chr2_3:55650441-55650460 | Msa0300300:intron | 35.0% |
| GTAGATGTGGTTGAAGTTAA+TGG | + | chr2_3:55650488-55650507 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAAAGAGA+AGG | + | chr2_3:55650562-55650581 | None:intergenic | 35.0% | |
| ! | CTAGTGGATGATTATGATCA+TGG | - | chr2_3:55651027-55651046 | Msa0300300:intron | 35.0% |
| !!! | GCTTGTATTTTAGGATTTGG+AGG | - | chr2_3:55651267-55651286 | Msa0300300:intron | 35.0% |
| ! | CTTTGTGGATTATGTATGCT+AGG | - | chr2_3:55651613-55651632 | Msa0300300:intron | 35.0% |
| CCCAACCTTATGGATATATA+AGG | + | chr2_3:55651787-55651806 | None:intergenic | 35.0% | |
| TTTGTTTAGGGGATACAAGT+AGG | - | chr2_3:55652068-55652087 | Msa0300300:intron | 35.0% | |
| ! | TAGCTTTTACCAAATCACAG+TGG | + | chr2_3:55652165-55652184 | None:intergenic | 35.0% |
| !! | ATTTTGATCCGGTGTATGTT+TGG | + | chr2_3:55652267-55652286 | None:intergenic | 35.0% |
| ACATACACCGGATCAAAATA+AGG | - | chr2_3:55652268-55652287 | Msa0300300:intron | 35.0% | |
| CATACACCGGATCAAAATAA+GGG | - | chr2_3:55652269-55652288 | Msa0300300:intron | 35.0% | |
| !!! | ACATCACCCTTATTTTGATC+CGG | + | chr2_3:55652278-55652297 | None:intergenic | 35.0% |
| !! | ATAAGGGTGATGTTTTTGTG+GGG | - | chr2_3:55652285-55652304 | Msa0300300:intron | 35.0% |
| !!! | AGTTTTTTTGTGCCCTTTTG+AGG | - | chr2_3:55652323-55652342 | Msa0300300:intron | 35.0% |
| TTAGTAACTCTGCCTCAAAA+GGG | + | chr2_3:55652338-55652357 | None:intergenic | 35.0% | |
| ATTAGTAACTCTGCCTCAAA+AGG | + | chr2_3:55652339-55652358 | None:intergenic | 35.0% | |
| TTGAGGCAGAGTTACTAATT+TGG | - | chr2_3:55652340-55652359 | Msa0300300:intron | 35.0% | |
| TGAGGCAGAGTTACTAATTT+GGG | - | chr2_3:55652341-55652360 | Msa0300300:intron | 35.0% | |
| !!! | TGTCTTTGTTGTTTTGTGCT+TGG | - | chr2_3:55652371-55652390 | Msa0300300:intron | 35.0% |
| !!! | TTTTTTTTGGATGAAGGGTG+GGG | + | chr2_3:55652483-55652502 | None:intergenic | 35.0% |
| GTTTATGAAATTGGCCATTG+TGG | - | chr2_3:55652792-55652811 | Msa0300300:CDS | 35.0% | |
| TTCACGTATTTAAGCCACAA+TGG | + | chr2_3:55652809-55652828 | None:intergenic | 35.0% | |
| CAGATGTAACATAGCATGAT+AGG | + | chr2_3:55652846-55652865 | None:intergenic | 35.0% | |
| AAATTGATGTCAGTTCCAGA+GGG | + | chr2_3:55653039-55653058 | None:intergenic | 35.0% | |
| AAAATTGATGTCAGTTCCAG+AGG | + | chr2_3:55653040-55653059 | None:intergenic | 35.0% | |
| GCAAGAAGAAGAAAGAAGGA+AGG | + | chr2_3:55650360-55650379 | None:intergenic | 40.0% | |
| !! | TGGGTTTGTTATCGTAGATG+TGG | + | chr2_3:55650501-55650520 | None:intergenic | 40.0% |
| !!! | GTTTTGGTGGTGGTTGTTAT+GGG | + | chr2_3:55650520-55650539 | None:intergenic | 40.0% |
| !!! | CTTTGAAGCGTTGTTGGTTT+TGG | + | chr2_3:55650536-55650555 | None:intergenic | 40.0% |
| AGGATTCGACCATGTTTGTT+TGG | + | chr2_3:55650622-55650641 | None:intergenic | 40.0% | |
| ! | GTTGGATGTGAAATGGGTTT+GGG | + | chr2_3:55650664-55650683 | None:intergenic | 40.0% |
| AGGAGGATTAGATTGCTTTG+TGG | - | chr2_3:55651598-55651617 | Msa0300300:intron | 40.0% | |
| ! | TGAGTGCATGTTTGGATTAG+CGG | - | chr2_3:55652113-55652132 | Msa0300300:intron | 40.0% |
| ! | TTTGGAGCTACCCAAAATCA+TGG | - | chr2_3:55652188-55652207 | Msa0300300:intron | 40.0% |
| CTGTCAAACCAAACATACAC+CGG | - | chr2_3:55652256-55652275 | Msa0300300:intron | 40.0% | |
| TTGTGGGGTTCTTGATTAAG+AGG | - | chr2_3:55652300-55652319 | Msa0300300:intron | 40.0% | |
| TTCACGTACTTAAGCCACAA+TGG | + | chr2_3:55652764-55652783 | None:intergenic | 40.0% | |
| CTCTCTCTCTGCAAACAAAC+TGG | - | chr2_3:55650434-55650453 | Msa0300300:intron | 45.0% | |
| !!! | GGTTTTGGTGGTGGTTGTTA+TGG | + | chr2_3:55650521-55650540 | None:intergenic | 45.0% |
| !!! | TGAAGCGTTGTTGGTTTTGG+TGG | + | chr2_3:55650533-55650552 | None:intergenic | 45.0% |
| !! | AGGGTTCTTTGAAGCGTTGT+TGG | + | chr2_3:55650542-55650561 | None:intergenic | 45.0% |
| GGAAACTGCAGAATACGAAG+CGG | + | chr2_3:55650596-55650615 | None:intergenic | 45.0% | |
| GTTTCCGCACCAAACAAACA+TGG | - | chr2_3:55650610-55650629 | Msa0300300:intron | 45.0% | |
| ! | TCGACCATGTTTGTTTGGTG+CGG | + | chr2_3:55650617-55650636 | None:intergenic | 45.0% |
| ! | TGTGAAATGGGTTTGGGTGT+GGG | + | chr2_3:55650658-55650677 | None:intergenic | 45.0% |
| ! | ATGTGAAATGGGTTTGGGTG+TGG | + | chr2_3:55650659-55650678 | None:intergenic | 45.0% |
| ! | GGTTGGATGTGAAATGGGTT+TGG | + | chr2_3:55650665-55650684 | None:intergenic | 45.0% |
| ! | TGTTGTTGTTGGATCGGGTT+GGG | + | chr2_3:55650712-55650731 | None:intergenic | 45.0% |
| AAACTGGAGGCTGTTGTTGT+TGG | + | chr2_3:55650723-55650742 | None:intergenic | 45.0% | |
| !! | AAAGAACCGATTCGACCCAA+CGG | + | chr2_3:55650796-55650815 | None:intergenic | 45.0% |
| ! | TCGAATCGGTTCTTTGTCGT+CGG | - | chr2_3:55650801-55650820 | Msa0300300:intron | 45.0% |
| !!! | TTACCGAACCCGGTTTTGAA+CGG | - | chr2_3:55650829-55650848 | Msa0300300:intron | 45.0% |
| TCTTTCTCGCCGTTCAAAAC+CGG | + | chr2_3:55650841-55650860 | None:intergenic | 45.0% | |
| CGAGAAAGAGAAGAGTTTGC+CGG | - | chr2_3:55650852-55650871 | Msa0300300:intron | 45.0% | |
| AAGAGTTTGCCGGTGAAAAG+TGG | - | chr2_3:55650862-55650881 | Msa0300300:intron | 45.0% | |
| AGAGGATGAGGAAGGTTTCT+GGG | - | chr2_3:55650974-55650993 | Msa0300300:intron | 45.0% | |
| ! | GAAGGTTTCTGGGTCTGATA+CGG | - | chr2_3:55650984-55651003 | Msa0300300:intron | 45.0% |
| ! | AAGGTTTCTGGGTCTGATAC+GGG | - | chr2_3:55650985-55651004 | Msa0300300:intron | 45.0% |
| !! | GAGTTGCAAGGGAGTATCTT+AGG | - | chr2_3:55651569-55651588 | Msa0300300:intron | 45.0% |
| !! | CAAGGGAGTATCTTAGGACT+TGG | - | chr2_3:55651575-55651594 | Msa0300300:intron | 45.0% |
| AGTATCTTAGGACTTGGAGG+AGG | - | chr2_3:55651581-55651600 | Msa0300300:intron | 45.0% | |
| CAACCAGATGCACAAAGCTT+TGG | - | chr2_3:55652738-55652757 | Msa0300300:CDS | 45.0% | |
| GTACATATCCTTTGTCCCTC+TGG | - | chr2_3:55653021-55653040 | Msa0300300:five_prime_UTR | 45.0% | |
| !!! | CTTTATTTAATAATTTTAAA+TGG | - | chr2_3:55652583-55652602 | Msa0300300:CDS | 5.0% |
| !!! | AGCGTTGTTGGTTTTGGTGG+TGG | + | chr2_3:55650530-55650549 | None:intergenic | 50.0% |
| AGAATACGAAGCGGAGGAGA+AGG | + | chr2_3:55650587-55650606 | None:intergenic | 50.0% | |
| AACTGCAGAATACGAAGCGG+AGG | + | chr2_3:55650593-55650612 | None:intergenic | 50.0% | |
| ! | AAATGGGTTTGGGTGTGGGT+CGG | + | chr2_3:55650654-55650673 | None:intergenic | 50.0% |
| GGTGGGGTTGGATGTGAAAT+GGG | + | chr2_3:55650670-55650689 | None:intergenic | 50.0% | |
| !! | TGTTGGATCGGGTTGGGTTT+GGG | + | chr2_3:55650706-55650725 | None:intergenic | 50.0% |
| !! | TTGTTGGATCGGGTTGGGTT+TGG | + | chr2_3:55650707-55650726 | None:intergenic | 50.0% |
| ! | CTGTTGTTGTTGGATCGGGT+TGG | + | chr2_3:55650713-55650732 | None:intergenic | 50.0% |
| ! | GAGGCTGTTGTTGTTGGATC+GGG | + | chr2_3:55650717-55650736 | None:intergenic | 50.0% |
| ! | GGAGGCTGTTGTTGTTGGAT+CGG | + | chr2_3:55650718-55650737 | None:intergenic | 50.0% |
| GGTCGATCTGAAGAAACTGG+AGG | + | chr2_3:55650736-55650755 | None:intergenic | 50.0% | |
| CAGTTTCTTCAGATCGACCC+CGG | - | chr2_3:55650737-55650756 | Msa0300300:intron | 50.0% | |
| AGCGAGATTGAATCTGGTCC+CGG | + | chr2_3:55650769-55650788 | None:intergenic | 50.0% | |
| GGACGAAGCGAGATTGAATC+TGG | + | chr2_3:55650775-55650794 | None:intergenic | 50.0% | |
| TTCAATCTCGCTTCGTCCGT+TGG | - | chr2_3:55650777-55650796 | Msa0300300:intron | 50.0% | |
| TCAATCTCGCTTCGTCCGTT+GGG | - | chr2_3:55650778-55650797 | Msa0300300:intron | 50.0% | |
| ! | CGAATCGGTTCTTTGTCGTC+GGG | - | chr2_3:55650802-55650821 | Msa0300300:intron | 50.0% |
| CTTTCTCGCCGTTCAAAACC+GGG | + | chr2_3:55650840-55650859 | None:intergenic | 50.0% | |
| GAAAACTTGCGACCCAAGTC+TGG | - | chr2_3:55650943-55650962 | Msa0300300:intron | 50.0% | |
| CTCTCATTCCCACCAGACTT+GGG | + | chr2_3:55650958-55650977 | None:intergenic | 50.0% | |
| TGGGAATGAGAGGATGAGGA+AGG | - | chr2_3:55650966-55650985 | Msa0300300:intron | 50.0% | |
| GAGAGGATGAGGAAGGTTTC+TGG | - | chr2_3:55650973-55650992 | Msa0300300:intron | 50.0% | |
| TTCTGGGTCTGATACGGGTT+TGG | - | chr2_3:55650990-55651009 | Msa0300300:intron | 50.0% | |
| TCTGGGTCTGATACGGGTTT+GGG | - | chr2_3:55650991-55651010 | Msa0300300:intron | 50.0% | |
| GGGAATCGACCCAATTCTAG+TGG | - | chr2_3:55651011-55651030 | Msa0300300:intron | 50.0% | |
| !! | GGGAGTATCTTAGGACTTGG+AGG | - | chr2_3:55651578-55651597 | Msa0300300:intron | 50.0% |
| !! | GCATGTTTGGATTAGCGGTG+AGG | - | chr2_3:55652118-55652137 | Msa0300300:intron | 50.0% |
| CTTGGTGAGCCACTGTGATT+TGG | - | chr2_3:55652153-55652172 | Msa0300300:intron | 50.0% | |
| ! | TACGGCGACGCCATGATTTT+GGG | + | chr2_3:55652201-55652220 | None:intergenic | 50.0% |
| ! | TTACGGCGACGCCATGATTT+TGG | + | chr2_3:55652202-55652221 | None:intergenic | 50.0% |
| ATGAAGGGTGGGGTGAAATG+AGG | + | chr2_3:55652473-55652492 | None:intergenic | 50.0% | |
| GACTCAAACCCGGAACTAGT+CGG | - | chr2_3:55652615-55652634 | Msa0300300:CDS | 50.0% | |
| ! | TACTCCATCCGACTAGTTCC+GGG | + | chr2_3:55652626-55652645 | None:intergenic | 50.0% |
| ! | CTACTCCATCCGACTAGTTC+CGG | + | chr2_3:55652627-55652646 | None:intergenic | 50.0% |
| ! | TGGCCAAAGCTTTGTGCATC+TGG | + | chr2_3:55652744-55652763 | None:intergenic | 50.0% |
| ! | GCACAAAGCTTTGGCCATTG+TGG | - | chr2_3:55652747-55652766 | Msa0300300:CDS | 50.0% |
| TGTCAGTTCCAGAGGGACAA+AGG | + | chr2_3:55653032-55653051 | None:intergenic | 50.0% | |
| GTGTGGGTCGGGTTAAAACG+AGG | + | chr2_3:55650642-55650661 | None:intergenic | 55.0% | |
| ! | AATGGGTTTGGGTGTGGGTC+GGG | + | chr2_3:55650653-55650672 | None:intergenic | 55.0% |
| GGGTGGGGTTGGATGTGAAA+TGG | + | chr2_3:55650671-55650690 | None:intergenic | 55.0% | |
| GGTTTGGGCTGTGATTGTGC+GGG | + | chr2_3:55650691-55650710 | None:intergenic | 55.0% | |
| GGGTTTGGGCTGTGATTGTG+CGG | + | chr2_3:55650692-55650711 | None:intergenic | 55.0% | |
| CGGGGTCGATCTGAAGAAAC+TGG | + | chr2_3:55650739-55650758 | None:intergenic | 55.0% | |
| AATCTGGTCCCGGTTCAGAC+CGG | + | chr2_3:55650759-55650778 | None:intergenic | 55.0% | |
| CTTCGTCCGTTGGGTCGAAT+CGG | - | chr2_3:55650787-55650806 | Msa0300300:intron | 55.0% | |
| ! | GTCGGGTCTTTTACCGAACC+CGG | - | chr2_3:55650819-55650838 | Msa0300300:intron | 55.0% |
| TCGCCGTTCAAAACCGGGTT+CGG | + | chr2_3:55650835-55650854 | None:intergenic | 55.0% | |
| ACAAACCCCGGACGAAGATG+CGG | + | chr2_3:55650901-55650920 | None:intergenic | 55.0% | |
| TCCCTAAGACACTCCTCCCT+CGG | + | chr2_3:55650925-55650944 | None:intergenic | 55.0% | |
| AACTTGCGACCCAAGTCTGG+TGG | - | chr2_3:55650946-55650965 | Msa0300300:intron | 55.0% | |
| ACTTGCGACCCAAGTCTGGT+GGG | - | chr2_3:55650947-55650966 | Msa0300300:intron | 55.0% | |
| CCTCTCATTCCCACCAGACT+TGG | + | chr2_3:55650959-55650978 | None:intergenic | 55.0% | |
| CCAAGTCTGGTGGGAATGAG+AGG | - | chr2_3:55650956-55650975 | Msa0300300:intron | 55.0% | |
| CTGGTGGGAATGAGAGGATG+AGG | - | chr2_3:55650962-55650981 | Msa0300300:intron | 55.0% | |
| GTGAGGTTGCCATGCTAGCT+TGG | - | chr2_3:55652135-55652154 | Msa0300300:intron | 55.0% | |
| AGTGGCTCACCAAGCTAGCA+TGG | + | chr2_3:55652147-55652166 | None:intergenic | 55.0% | |
| TAGTTCCGGGTTTGAGTCCC+GGG | + | chr2_3:55652613-55652632 | None:intergenic | 55.0% | |
| CTAGTTCCGGGTTTGAGTCC+CGG | + | chr2_3:55652614-55652633 | None:intergenic | 55.0% | |
| CAAACCCGGAACTAGTCGGA+TGG | - | chr2_3:55652619-55652638 | Msa0300300:CDS | 55.0% | |
| TGTGATTGTGCGGGTGGGGT+TGG | + | chr2_3:55650682-55650701 | None:intergenic | 60.0% | |
| TGGGCTGTGATTGTGCGGGT+GGG | + | chr2_3:55650687-55650706 | None:intergenic | 60.0% | |
| TTGGGCTGTGATTGTGCGGG+TGG | + | chr2_3:55650688-55650707 | None:intergenic | 60.0% | |
| AGATCGACCCCGGTCTGAAC+CGG | - | chr2_3:55650747-55650766 | Msa0300300:intron | 60.0% | |
| ATCTGGTCCCGGTTCAGACC+GGG | + | chr2_3:55650758-55650777 | None:intergenic | 60.0% | |
| !! | TGCCGAGGGAGGAGTGTCTT+AGG | - | chr2_3:55650920-55650939 | Msa0300300:intron | 60.0% |
| !! | GCCGAGGGAGGAGTGTCTTA+GGG | - | chr2_3:55650921-55650940 | Msa0300300:intron | 60.0% |
| GTTTGCCCGGGACTCAAACC+CGG | - | chr2_3:55652605-55652624 | Msa0300300:CDS | 60.0% | |
| GGGCTGTGATTGTGCGGGTG+GGG | + | chr2_3:55650686-55650705 | None:intergenic | 65.0% | |
| GATCGACCCCGGTCTGAACC+GGG | - | chr2_3:55650748-55650767 | Msa0300300:intron | 65.0% | |
| TCTGGTCCCGGTTCAGACCG+GGG | + | chr2_3:55650757-55650776 | None:intergenic | 65.0% | |
| TGTGCCGCCGCATCTTCGTC+CGG | - | chr2_3:55650891-55650910 | Msa0300300:intron | 65.0% | |
| AACCCCGGACGAAGATGCGG+CGG | + | chr2_3:55650898-55650917 | None:intergenic | 65.0% | |
| TTCGTCCGGGGTTTGTGCCG+AGG | - | chr2_3:55650905-55650924 | Msa0300300:intron | 65.0% | |
| TCGTCCGGGGTTTGTGCCGA+GGG | - | chr2_3:55650906-55650925 | Msa0300300:intron | 65.0% | |
| TCCTCCCTCGGCACAAACCC+CGG | + | chr2_3:55650913-55650932 | None:intergenic | 65.0% | |
| GTGCCGCCGCATCTTCGTCC+GGG | - | chr2_3:55650892-55650911 | Msa0300300:intron | 70.0% | |
| TGCCGCCGCATCTTCGTCCG+GGG | - | chr2_3:55650893-55650912 | Msa0300300:intron | 70.0% | |
| TCCGGGGTTTGTGCCGAGGG+AGG | - | chr2_3:55650909-55650928 | Msa0300300:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 55650345 | 55653098 | 55650345 | ID=Msa0300300;Name=Msa0300300 |
| chr2_3 | mRNA | 55650345 | 55653098 | 55650345 | ID=Msa0300300-mRNA-1;Parent=Msa0300300;Name=Msa0300300-mRNA-1;_AED=0.15;_eAED=0.25;_QI=115|0|0.5|1|1|1|2|0|225 |
| chr2_3 | exon | 55650345 | 55650433 | 55650345 | ID=Msa0300300-mRNA-1:exon:17803;Parent=Msa0300300-mRNA-1 |
| chr2_3 | exon | 55652395 | 55653098 | 55652395 | ID=Msa0300300-mRNA-1:exon:17802;Parent=Msa0300300-mRNA-1 |
| chr2_3 | five_prime_UTR | 55652984 | 55653098 | 55652984 | ID=Msa0300300-mRNA-1:five_prime_utr;Parent=Msa0300300-mRNA-1 |
| chr2_3 | CDS | 55652395 | 55652983 | 55652395 | ID=Msa0300300-mRNA-1:cds;Parent=Msa0300300-mRNA-1 |
| chr2_3 | CDS | 55650345 | 55650433 | 55650345 | ID=Msa0300300-mRNA-1:cds;Parent=Msa0300300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
