AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0467920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467920 MtrunA17_Chr3g0122401 98.280 465 5 1 1 462 1 465 0.0 951
Msa0467920 MtrunA17_Chr1g0161871 46.950 377 165 10 102 461 18 376 3.27e-107 323
Msa0467920 MtrunA17_Chr1g0161891 48.370 368 167 11 97 461 2 349 4.34e-107 321
Msa0467920 MtrunA17_Chr7g0220421 30.939 362 224 15 88 436 68 416 3.26e-34 133
Msa0467920 MtrunA17_Chr1g0150561 25.515 388 240 13 115 460 21 401 1.63e-30 122
Msa0467920 MtrunA17_Chr4g0052791 25.707 389 238 12 108 460 55 428 1.27e-25 108
Msa0467920 MtrunA17_Chr8g0347881 26.146 371 230 14 117 458 45 400 4.68e-23 100
Msa0467920 MtrunA17_Chr4g0003651 25.707 389 230 19 112 460 1 370 1.48e-22 99.0
Msa0467920 MtrunA17_Chr8g0377451 50.909 110 31 5 354 462 1 88 1.98e-22 91.3
Msa0467920 MtrunA17_Chr8g0347851 24.932 369 234 13 116 458 44 395 8.57e-20 91.3
Msa0467920 MtrunA17_Chr1g0152611 23.204 362 227 12 108 437 28 370 3.65e-13 70.9
Msa0467920 MtrunA17_Chr2g0293971 22.264 265 179 9 116 358 9 268 6.70e-12 67.0
Msa0467920 MtrunA17_Chr3g0078391 24.111 253 159 8 116 336 47 298 9.41e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467920 AT1G27340.1 65.598 468 151 6 2 462 3 467 0.0 626
Msa0467920 AT5G15710.1 28.043 460 279 15 1 439 1 429 5.20e-33 130
Msa0467920 AT5G15710.2 28.043 460 279 15 1 439 1 429 5.20e-33 130
Msa0467920 AT1G30950.1 26.446 363 225 10 108 437 42 395 5.97e-31 124
Msa0467920 AT4G33160.1 23.059 425 260 13 96 462 42 457 9.96e-25 106
Msa0467920 AT4G33160.2 23.059 425 260 13 96 462 103 518 2.01e-24 106
Msa0467920 AT5G43190.1 25.833 360 224 13 103 437 38 379 7.42e-18 85.9
Msa0467920 AT3G61590.2 36.364 121 73 3 116 234 51 169 4.26e-17 83.6
Msa0467920 AT3G61590.3 36.364 121 73 3 116 234 51 169 4.26e-17 83.6
Msa0467920 AT3G61590.1 36.364 121 73 3 116 234 43 161 4.62e-17 83.6
Msa0467920 AT3G61590.4 36.667 120 72 3 117 234 80 197 6.09e-17 83.2

Find 157 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGGTTCCTTGCCATTTGC+AGG 0.216151 3_3:+69410042 Msa0467920:three_prime_UTR
TTATACCATATTTGTGCTTT+GGG 0.233825 3_3:+69410295 Msa0467920:three_prime_UTR
CCTATAATACCTTTGATAAA+AGG 0.259948 3_3:+69410217 Msa0467920:three_prime_UTR
TGCCATTTGCAGGTCTTATT+AGG 0.276391 3_3:+69410052 Msa0467920:three_prime_UTR
TTGTCCCCAAAGCACAAATA+TGG 0.278346 3_3:-69410300 None:intergenic
CGCACGGGCGATTGAGTATA+TGG 0.291268 3_3:+69406130 Msa0467920:five_prime_UTR
GATAGAAAGAGAAAGGAAAA+AGG 0.293836 3_3:+69406258 Msa0467920:five_prime_UTR
AAGTCCAAGCACCATATATT+TGG 0.306854 3_3:-69409761 None:intergenic
ATACTTCCAGGCATGTTTCC+TGG 0.307731 3_3:-69409455 None:intergenic
CTTATACCATATTTGTGCTT+TGG 0.320113 3_3:+69410294 Msa0467920:three_prime_UTR
TCATAGGAAACAACCCCTTC+TGG 0.328091 3_3:-69409554 None:intergenic
AAAGAATGGCTGAAGGTTCC+TGG 0.339162 3_3:+69409890 Msa0467920:CDS
AGGGGTTGTTTCCTATGATA+TGG 0.339167 3_3:+69409559 Msa0467920:CDS
ACCCATGAAAATGTGAATTC+AGG 0.349764 3_3:+69409113 Msa0467920:CDS
GTTTCCTATGATATGGCAAC+AGG 0.361646 3_3:+69409566 Msa0467920:CDS
TTATTATTAGTAGAGGAAAT+CGG 0.362073 3_3:+69406293 Msa0467920:five_prime_UTR
AAGTTATGGAACAAGAAATA+TGG 0.365064 3_3:+69408922 Msa0467920:CDS
TTCCATAACTTCACTTGTAC+TGG 0.365202 3_3:-69408910 None:intergenic
TATTATTAGTAGAGGAAATC+GGG 0.366134 3_3:+69406294 Msa0467920:five_prime_UTR
CCGTCAATGGAATTCCTTGC+TGG 0.368398 3_3:+69409025 Msa0467920:CDS
CACTGCCGTTTCTTCCCATT+CGG 0.369756 3_3:-69409923 None:intergenic
CCCCTGCTTCGATCTCTTCG+AGG 0.376451 3_3:-69408870 None:intergenic
TAGACAGAATGCCAAATATA+TGG 0.389573 3_3:+69409750 Msa0467920:CDS
TGCCATTGTCCCTTAACTTC+AGG 0.389987 3_3:+69409483 Msa0467920:CDS
ACAGCCTCAAATAAATCTTC+AGG 0.391468 3_3:-69408954 None:intergenic
ATGATATGGCAACAGGGGTT+TGG 0.394545 3_3:+69409573 Msa0467920:CDS
CCCACTAACTCAATCCTTCA+AGG 0.400080 3_3:+69409280 Msa0467920:CDS
CAGTTTGCGACCTGAAGTTA+AGG 0.407146 3_3:-69409493 None:intergenic
TTCTGTATTCAATAACTGAA+TGG 0.413628 3_3:+69410261 Msa0467920:three_prime_UTR
GCATTAGCGCATGGAAGGGC+TGG 0.416334 3_3:+69406326 Msa0467920:exon
CTAATCCCAGCGTTCCTCTC+TGG 0.418673 3_3:+69410086 Msa0467920:three_prime_UTR
CGAAGCAGGGGCAAATCATC+AGG 0.419820 3_3:+69408882 Msa0467920:CDS
AATGGCAGGTTCATACTTCC+AGG 0.420328 3_3:-69409467 None:intergenic
CAGAGAGGAACGCTGGGATT+AGG 0.423155 3_3:-69410085 None:intergenic
AATGGAAATTCAATCAGTTC+AGG 0.423765 3_3:+69409359 Msa0467920:CDS
ATCCAGTACAAGTGAAGTTA+TGG 0.433150 3_3:+69408908 Msa0467920:CDS
TCCTTGAAGGATTGAGTTAG+TGG 0.433327 3_3:-69409281 None:intergenic
CCGAGCTGGCAACTCCTTGA+AGG 0.435297 3_3:-69409294 None:intergenic
CAGCCACGTGTGTATGCATA+TGG 0.440067 3_3:+69409693 Msa0467920:CDS
ATCTGAACGCATGAAGTATA+GGG 0.440759 3_3:-69409531 None:intergenic
GTTCAGGCTACAAGATCCTA+TGG 0.440809 3_3:+69409375 Msa0467920:CDS
GATCTGAACGCATGAAGTAT+AGG 0.441700 3_3:-69409532 None:intergenic
AAAACAAAACTCCGTTTGCT+TGG 0.442190 3_3:+69406181 Msa0467920:five_prime_UTR
CGAGGCTTCTTAGCGGGTGG+AGG 0.447598 3_3:-69408852 None:intergenic
TTAGTTTGCTTTCTTGACAT+TGG 0.450160 3_3:+69409233 Msa0467920:CDS
GTCTGGTCTCGCGTTGCTGT+AGG 0.453658 3_3:+69409326 Msa0467920:CDS
CCTGGGTGTGTGGTGCCGAA+TGG 0.455358 3_3:+69409908 Msa0467920:CDS
TGGCAAAACAATCAACTTTG+TGG 0.460094 3_3:-69409192 None:intergenic
GATAGATAGTTCACTACTTA+CGG 0.461288 3_3:+69406152 Msa0467920:five_prime_UTR
GAGTAGAGATAGAAAGAGAA+AGG 0.465373 3_3:+69406251 Msa0467920:five_prime_UTR
CTGGGTGTGTGGTGCCGAAT+GGG 0.467430 3_3:+69409909 Msa0467920:CDS
GTTGCCAGCTCGGTCAGTTA+AGG 0.467547 3_3:+69409304 Msa0467920:CDS
TCAGTCAAATGTAGTGGCGC+TGG 0.471171 3_3:-69409611 None:intergenic
TCTGGTCTCGCGTTGCTGTA+GGG 0.474671 3_3:+69409327 Msa0467920:CDS
TCTCTTCGAGGCTTCTTAGC+GGG 0.476627 3_3:-69408858 None:intergenic
GGCAAAACAATCAACTTTGT+GGG 0.476939 3_3:-69409191 None:intergenic
TCCGCTCTGTATGCCGTCAA+TGG 0.480162 3_3:+69409012 Msa0467920:CDS
AACCCCTGTTGCCATATCAT+AGG 0.480445 3_3:-69409570 None:intergenic
TTGCCAGTGGCTTCTGCTGG+GGG 0.482095 3_3:+69409209 Msa0467920:CDS
TCCTTCAGCATCACCCTCCC+AGG 0.482244 3_3:+69406457 Msa0467920:CDS
ACTTTCCAGCTGCCATTACA+AGG 0.493916 3_3:-69408797 None:intergenic
TGAGATCGAAACAAATGAAT+CGG 0.494220 3_3:+69409843 Msa0467920:CDS
AGGAAGATAGTTTGATGAGA+AGG 0.494383 3_3:-69406438 None:intergenic
AGTGGCAGGTCGTTGCTGTA+AGG 0.496763 3_3:-69410006 None:intergenic
TGAGCAAGCCTTTGTTCCCT+AGG 0.496907 3_3:-69409811 None:intergenic
AGCCTCGAAGAGATCGAAGC+AGG 0.497044 3_3:+69408868 Msa0467920:CDS
TGTGGCCTTGTAATGGCAGC+TGG 0.498116 3_3:+69408792 Msa0467920:CDS
GATGGTCAGATCATGCTTGT+GGG 0.503093 3_3:+69409653 Msa0467920:CDS
ACAACATAGCAAGGAAAGAA+TGG 0.504668 3_3:+69409876 Msa0467920:CDS
ACAATCAACTTTGTGGGCAG+TGG 0.506047 3_3:-69409185 None:intergenic
AGAAGGTTGCTGTTGAAGAA+TGG 0.508961 3_3:-69406421 None:intergenic
GACGGCATACAGAGCGGAAG+CGG 0.516102 3_3:-69409007 None:intergenic
ATCTCTTCGAGGCTTCTTAG+CGG 0.517356 3_3:-69408859 None:intergenic
TGAAGTTAAGGGACAATGGC+AGG 0.518383 3_3:-69409481 None:intergenic
ATCCTATGGGTGGGTTGTGA+TGG 0.519459 3_3:+69409389 Msa0467920:CDS
TTTCAAAGAAGGGTCATACA+TGG 0.524726 3_3:-69409138 None:intergenic
CACGTCAGAATGACTTGCCT+AGG 0.525727 3_3:+69409794 Msa0467920:CDS
TTTGCCAGTGGCTTCTGCTG+GGG 0.528979 3_3:+69409208 Msa0467920:CDS
CAGCTCGGTCAGTTAAGGTC+TGG 0.530478 3_3:+69409309 Msa0467920:CDS
CCTTCAAGGAGTTGCCAGCT+CGG 0.530770 3_3:+69409294 Msa0467920:CDS
GCCATGCTGAAGCAGCTCAT+CGG 0.531549 3_3:+69406348 Msa0467920:CDS
AATGCCAAATATATGGTGCT+TGG 0.531763 3_3:+69409757 Msa0467920:CDS
AAACCACGTTTCCAAGCAAA+CGG 0.536760 3_3:-69406192 None:intergenic
ACTCCGTTTGCTTGGAAACG+TGG 0.538355 3_3:+69406189 Msa0467920:five_prime_UTR
AGTTTGCGACCTGAAGTTAA+GGG 0.541286 3_3:-69409492 None:intergenic
CAAGCCACCGCGGTCAAGCA+TGG 0.544564 3_3:-69409971 None:intergenic
GCCTCGAAGAGATCGAAGCA+GGG 0.544882 3_3:+69408869 Msa0467920:CDS
AGTCGTCCAGGAAACATGCC+TGG 0.549750 3_3:+69409449 Msa0467920:CDS
ACCGATGAGCTGCTTCAGCA+TGG 0.550406 3_3:-69406349 None:intergenic
CAGTCAAATGTAGTGGCGCT+GGG 0.551715 3_3:-69409610 None:intergenic
AGAGCTATCTTCGAGGTCAA+AGG 0.555308 3_3:-69408757 None:intergenic
CCAGCAAGGAATTCCATTGA+CGG 0.555971 3_3:-69409025 None:intergenic
CATCTACAGAGCTATCTTCG+AGG 0.556179 3_3:-69408764 None:intergenic
TTAGCGGGTGGAGGCTTCAG+AGG 0.556937 3_3:-69408843 None:intergenic
AAGAATGGCTGAAGGTTCCT+GGG 0.558151 3_3:+69409891 Msa0467920:CDS
CTTCGAGGCTTCTTAGCGGG+TGG 0.561487 3_3:-69408855 None:intergenic
CACCTAATAAGACCTGCAAA+TGG 0.562987 3_3:-69410054 None:intergenic
ATCGAAACAAATGAATCGGT+TGG 0.564495 3_3:+69409847 Msa0467920:CDS
CCTTGAAGGATTGAGTTAGT+GGG 0.570394 3_3:-69409280 None:intergenic
CACACTCTAGCTGAGTATGA+TGG 0.574409 3_3:+69409635 Msa0467920:CDS
GTTAAACCAGAGAGGAACGC+TGG 0.574971 3_3:-69410092 None:intergenic
GTGTGTGTTATTATTAGTAG+AGG 0.577401 3_3:+69406286 Msa0467920:five_prime_UTR
TGACTGTTGTGGCCTTGTAA+TGG 0.580674 3_3:+69408785 Msa0467920:CDS
TGGGTTATGGTGTAAAACCA+TGG 0.586647 3_3:-69409095 None:intergenic
GCTGTAGGGATGACAGTGAA+TGG 0.589049 3_3:+69409341 Msa0467920:CDS
TGGTGCCGAATGGGAAGAAA+CGG 0.591767 3_3:+69409918 Msa0467920:CDS
AAAGGTATTATAGGATAGCA+AGG 0.591838 3_3:-69410208 None:intergenic
TGCAGAGAATGACACTCTTG+TGG 0.591979 3_3:+69409720 Msa0467920:CDS
AAGTCCCGCAAGAAAATCCA+TGG 0.594704 3_3:+69409078 Msa0467920:CDS
TATACCATATTTGTGCTTTG+GGG 0.597702 3_3:+69410296 Msa0467920:three_prime_UTR
ATTATTAGTAGAGGAAATCG+GGG 0.597850 3_3:+69406295 Msa0467920:five_prime_UTR
TCATCCATGCTTGACCGCGG+TGG 0.597901 3_3:+69409967 Msa0467920:CDS
GGTCGTTGCTGTAAGGTACA+AGG 0.600597 3_3:-69409999 None:intergenic
GCTGAAGGTTCCTGGGTGTG+TGG 0.600893 3_3:+69409898 Msa0467920:CDS
TCATGCGTTCAGATCCAGAA+GGG 0.601959 3_3:+69409540 Msa0467920:CDS
TGGTTACTTACAACATAGCA+AGG 0.602101 3_3:+69409867 Msa0467920:CDS
ACCTGGGAGGGTGATGCTGA+AGG 0.604095 3_3:-69406458 None:intergenic
GAGAATGACACTCTTGTGGA+AGG 0.607066 3_3:+69409724 Msa0467920:CDS
ATGACTTGCCTAGGGAACAA+AGG 0.609468 3_3:+69409803 Msa0467920:CDS
GGCTACAAGATCCTATGGGT+GGG 0.610734 3_3:+69409380 Msa0467920:CDS
AGGCTACAAGATCCTATGGG+TGG 0.612217 3_3:+69409379 Msa0467920:CDS
AAAGCTTTGAGAAGCCAGCA+AGG 0.612786 3_3:-69409039 None:intergenic
TGATGGTCAGATCATGCTTG+TGG 0.614839 3_3:+69409652 Msa0467920:CDS
TTCCTATGATATGGCAACAG+GGG 0.616895 3_3:+69409568 Msa0467920:CDS
TTATTAGTAGAGGAAATCGG+GGG 0.619979 3_3:+69406296 Msa0467920:five_prime_UTR
GAGGGAAAACTAACCTGGGA+GGG 0.621021 3_3:-69406470 None:intergenic
GTGTGGTCAGTCAAATGTAG+TGG 0.622699 3_3:-69409617 None:intergenic
TTAAACCAGAGAGGAACGCT+GGG 0.625011 3_3:-69410091 None:intergenic
CTCCATCACAACCCACCCAT+AGG 0.626354 3_3:-69409391 None:intergenic
CAGACCTTAACTGACCGAGC+TGG 0.631524 3_3:-69409308 None:intergenic
AGAATATGAAGTTTATGACT+CGG 0.638363 3_3:+69409412 Msa0467920:CDS
AATAAGACCTGCAAATGGCA+AGG 0.642534 3_3:-69410049 None:intergenic
TTTCCTATGATATGGCAACA+GGG 0.643758 3_3:+69409567 Msa0467920:CDS
ACGTCAGAATGACTTGCCTA+GGG 0.644663 3_3:+69409795 Msa0467920:CDS
AATGACACTCTTGTGGAAGG+AGG 0.644741 3_3:+69409727 Msa0467920:CDS
TTCAGGCTACAAGATCCTAT+GGG 0.648233 3_3:+69409376 Msa0467920:CDS
AGCAAGGAAAGAATGGCTGA+AGG 0.648548 3_3:+69409883 Msa0467920:CDS
CCATTCGGCACCACACACCC+AGG 0.649604 3_3:-69409908 None:intergenic
ATTTCATCCATGCTTGACCG+CGG 0.649663 3_3:+69409964 Msa0467920:CDS
CGAATGGGAAGAAACGGCAG+TGG 0.651054 3_3:+69409924 Msa0467920:CDS
GTGGGCAGTGGTGATATAGA+CGG 0.653208 3_3:-69409173 None:intergenic
TTCATGCGTTCAGATCCAGA+AGG 0.658440 3_3:+69409539 Msa0467920:CDS
AGCCACGTGTGTATGCATAT+GGG 0.660040 3_3:+69409694 Msa0467920:CDS
GCTATCTTCGAGGTCAAAGG+AGG 0.661871 3_3:-69408754 None:intergenic
CCTCGAAGAGATCGAAGCAG+GGG 0.663964 3_3:+69408870 Msa0467920:CDS
CTCCCATATGCATACACACG+TGG 0.665284 3_3:-69409696 None:intergenic
TACATACATAGAAGTTACGA+TGG 0.667085 3_3:-69409256 None:intergenic
AGCTCTGTAGATGACTGTTG+TGG 0.670937 3_3:+69408774 Msa0467920:CDS
CATGCGTTCAGATCCAGAAG+GGG 0.671936 3_3:+69409541 Msa0467920:CDS
GACCTGAAGTTAAGGGACAA+TGG 0.674409 3_3:-69409485 None:intergenic
TCCATTGACGGCATACAGAG+CGG 0.675929 3_3:-69409013 None:intergenic
CATCATACTCAGCTAGAGTG+TGG 0.675947 3_3:-69409634 None:intergenic
AAACGGCAGTGGATAGCATG+TGG 0.678505 3_3:+69409935 Msa0467920:CDS
TATTAGTAGAGGAAATCGGG+GGG 0.696893 3_3:+69406297 Msa0467920:five_prime_UTR
AGAGGGAAAACTAACCTGGG+AGG 0.703983 3_3:-69406471 None:intergenic
TCTACTCTGTTAAACCAGAG+AGG 0.707618 3_3:-69410100 None:intergenic
CAAGGAAAATCAAGCCACCG+CGG 0.733913 3_3:-69409981 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATCAAAAATATAAAATT+GGG - chr3_3:69406909-69406928 None:intergenic 10.0%
!! AACTTAATTAATTTAAAAGA+TGG - chr3_3:69408375-69408394 None:intergenic 10.0%
!! ACATCAAAAATATAAAATTG+GGG - chr3_3:69406908-69406927 None:intergenic 15.0%
!! GAACATCAAAAATATAAAAT+TGG - chr3_3:69406910-69406929 None:intergenic 15.0%
!!! ACATAATTTTACATAAAATC+AGG + chr3_3:69406996-69407015 Msa0467920:intron 15.0%
!!! CATAATTTTACATAAAATCA+GGG + chr3_3:69406997-69407016 Msa0467920:intron 15.0%
!! TTATTTCAAAAAGAAGTAAA+TGG - chr3_3:69407885-69407904 None:intergenic 15.0%
!!! AAACTAATGTTGATTTTTTA+AGG + chr3_3:69408171-69408190 Msa0467920:intron 15.0%
!!! AACTAATGTTGATTTTTTAA+GGG + chr3_3:69408172-69408191 Msa0467920:intron 15.0%
!! AAGTTATATAATTACACATA+CGG + chr3_3:69408390-69408409 Msa0467920:intron 15.0%
!! AATGGATAAACAAAAATATT+TGG - chr3_3:69408723-69408742 None:intergenic 15.0%
!! TTATTATTAGTAGAGGAAAT+CGG + chr3_3:69406293-69406312 Msa0467920:five_prime_UTR 20.0%
!! ACAAAAAACTTACAGAAATT+AGG - chr3_3:69406807-69406826 None:intergenic 20.0%
!! ATCAAAAATATAAAATTGGG+GGG - chr3_3:69406906-69406925 None:intergenic 20.0%
!! CATCAAAAATATAAAATTGG+GGG - chr3_3:69406907-69406926 None:intergenic 20.0%
!! ACAAACAAAAAACACAATTA+GGG - chr3_3:69407222-69407241 None:intergenic 20.0%
!! AACAAACAAAAAACACAATT+AGG - chr3_3:69407223-69407242 None:intergenic 20.0%
!!! TTGTTTTTGTTGACATTTTT+CGG + chr3_3:69407554-69407573 Msa0467920:intron 20.0%
!!! GAAACTTTTAGTGAATTTTT+AGG + chr3_3:69407698-69407717 Msa0467920:intron 20.0%
!! TTGATTAAAATTGAGTTTGA+AGG + chr3_3:69408004-69408023 Msa0467920:intron 20.0%
!! TGATTAAAATTGAGTTTGAA+GGG + chr3_3:69408005-69408024 Msa0467920:intron 20.0%
!! TTCTAATCAAATTGAGATTT+GGG + chr3_3:69408144-69408163 Msa0467920:intron 20.0%
!! CATGAAATTATAGTGTATAA+AGG + chr3_3:69408232-69408251 Msa0467920:intron 20.0%
!!! CATTTTGAAAATGTCTATTT+TGG + chr3_3:69408256-69408275 Msa0467920:intron 20.0%
!! AGAGTAGATGAAAAATAATT+TGG + chr3_3:69410115-69410134 Msa0467920:three_prime_UTR 20.0%
!! GAGTAGATGAAAAATAATTT+GGG + chr3_3:69410116-69410135 Msa0467920:three_prime_UTR 20.0%
!!! TTTATATCACCTTTTATCAA+AGG - chr3_3:69410229-69410248 None:intergenic 20.0%
! TATTATTAGTAGAGGAAATC+GGG + chr3_3:69406294-69406313 Msa0467920:five_prime_UTR 25.0%
!! TTAGGAATTGTTGCATTTTA+GGG - chr3_3:69406789-69406808 None:intergenic 25.0%
!! ATTAGGAATTGTTGCATTTT+AGG - chr3_3:69406790-69406809 None:intergenic 25.0%
! TCAAAAATATAAAATTGGGG+GGG - chr3_3:69406905-69406924 None:intergenic 25.0%
!!! CATTGTTGCTTATTTTCTAT+TGG + chr3_3:69406934-69406953 Msa0467920:intron 25.0%
! TTACATAAAATCAGGGAAAA+TGG + chr3_3:69407004-69407023 Msa0467920:intron 25.0%
!!! TTTTAGAGAGAACTAGTATA+CGG + chr3_3:69407092-69407111 Msa0467920:intron 25.0%
!! ACTTAAAAGCATGCTATTTA+TGG - chr3_3:69407150-69407169 None:intergenic 25.0%
! TTTGAATTGAGTATCATTTG+CGG + chr3_3:69407241-69407260 Msa0467920:intron 25.0%
!! TTTAACATTTTTGCATTCCT+AGG + chr3_3:69407333-69407352 Msa0467920:intron 25.0%
!! TTAACATTTTTGCATTCCTA+GGG + chr3_3:69407334-69407353 Msa0467920:intron 25.0%
! ATAAGGTTTAACCACAATTA+CGG - chr3_3:69407421-69407440 None:intergenic 25.0%
! AATTGTGGTTAAACCTTATT+TGG + chr3_3:69407422-69407441 Msa0467920:intron 25.0%
! TTTCGTTCTGTTTGATTATT+TGG + chr3_3:69407481-69407500 Msa0467920:intron 25.0%
! AAAAATTGCATTAACAACCT+TGG - chr3_3:69408064-69408083 None:intergenic 25.0%
!!! AAAACCACTTTTGTATTAGA+CGG - chr3_3:69408087-69408106 None:intergenic 25.0%
! CTTCTAATCAAATTGAGATT+TGG + chr3_3:69408143-69408162 Msa0467920:intron 25.0%
! TCTAATCAAATTGAGATTTG+GGG + chr3_3:69408145-69408164 Msa0467920:intron 25.0%
! AAGTAGATTAATCTAGTGTA+TGG + chr3_3:69408345-69408364 Msa0467920:intron 25.0%
! TAGAAAAACCAACATTTACA+GGG - chr3_3:69408681-69408700 None:intergenic 25.0%
! AAGTTATGGAACAAGAAATA+TGG + chr3_3:69408922-69408941 Msa0467920:CDS 25.0%
!! TTTTCCTGAAGATTTATTTG+AGG + chr3_3:69408950-69408969 Msa0467920:CDS 25.0%
! AGAATATGAAGTTTATGACT+CGG + chr3_3:69409412-69409431 Msa0467920:CDS 25.0%
!! TGAAAAATAATTTGGGTTTG+TGG + chr3_3:69410123-69410142 Msa0467920:three_prime_UTR 25.0%
!!! CCTTTTATCAAAGGTATTAT+AGG - chr3_3:69410220-69410239 None:intergenic 25.0%
! CCTATAATACCTTTGATAAA+AGG + chr3_3:69410217-69410236 Msa0467920:three_prime_UTR 25.0%
! TTCTGTATTCAATAACTGAA+TGG + chr3_3:69410261-69410280 Msa0467920:three_prime_UTR 25.0%
! TTATACCATATTTGTGCTTT+GGG + chr3_3:69410295-69410314 Msa0467920:three_prime_UTR 25.0%
GATAGATAGTTCACTACTTA+CGG + chr3_3:69406152-69406171 Msa0467920:five_prime_UTR 30.0%
GATAGAAAGAGAAAGGAAAA+AGG + chr3_3:69406258-69406277 Msa0467920:five_prime_UTR 30.0%
! GTGTGTGTTATTATTAGTAG+AGG + chr3_3:69406286-69406305 Msa0467920:five_prime_UTR 30.0%
ATTATTAGTAGAGGAAATCG+GGG + chr3_3:69406295-69406314 Msa0467920:five_prime_UTR 30.0%
AAATGATTCACCAAAACTAG+AGG - chr3_3:69406577-69406596 None:intergenic 30.0%
AAAAATATAAAATTGGGGGG+GGG - chr3_3:69406903-69406922 None:intergenic 30.0%
CAAAAATATAAAATTGGGGG+GGG - chr3_3:69406904-69406923 None:intergenic 30.0%
AAAATCAGGGAAAATGGAAT+TGG + chr3_3:69407010-69407029 Msa0467920:intron 30.0%
GCTTAACGACAAGAAAAAAA+AGG - chr3_3:69407118-69407137 None:intergenic 30.0%
TGAAATATTACCGCCAAATA+CGG + chr3_3:69407187-69407206 Msa0467920:intron 30.0%
TTGAATTGAGTATCATTTGC+GGG + chr3_3:69407242-69407261 Msa0467920:intron 30.0%
TCAACAAAAACAAAACAAGC+AGG - chr3_3:69407547-69407566 None:intergenic 30.0%
TTCGGTAAAGATCAATTTAC+TGG + chr3_3:69407572-69407591 Msa0467920:intron 30.0%
!!! ATTATCCTCCTTTTTTAAGG+AGG - chr3_3:69407748-69407767 None:intergenic 30.0%
!!! GCAATTATCCTCCTTTTTTA+AGG - chr3_3:69407751-69407770 None:intergenic 30.0%
!! GTAAATGGTATGTGCTATTT+AGG - chr3_3:69407870-69407889 None:intergenic 30.0%
ACATTGAACATGTATATCGT+GGG + chr3_3:69407938-69407957 Msa0467920:intron 30.0%
AAGGGAAGTGATTTAAATCT+AGG + chr3_3:69408023-69408042 Msa0467920:intron 30.0%
! TTTTCCGTCTAATACAAAAG+TGG + chr3_3:69408080-69408099 Msa0467920:intron 30.0%
CTAATCAAATTGAGATTTGG+GGG + chr3_3:69408146-69408165 Msa0467920:intron 30.0%
AACCAAACATGCTACAAATA+TGG + chr3_3:69408206-69408225 Msa0467920:intron 30.0%
TACCATATTTGTAGCATGTT+TGG - chr3_3:69408211-69408230 None:intergenic 30.0%
! TCTCTAATCTGATTTGACAA+AGG - chr3_3:69408293-69408312 None:intergenic 30.0%
AAATCAGATTAGAGAGTTGA+TGG + chr3_3:69408298-69408317 Msa0467920:intron 30.0%
! AATCAGATTAGAGAGTTGAT+GGG + chr3_3:69408299-69408318 Msa0467920:intron 30.0%
AAGACATCAAAGTAAATGTC+AGG - chr3_3:69408501-69408520 None:intergenic 30.0%
GATCAGGATAATTTATACCT+AGG - chr3_3:69408543-69408562 None:intergenic 30.0%
TATAAATTATCCTGATCGCA+TGG + chr3_3:69408546-69408565 Msa0467920:intron 30.0%
ATAAATTATCCTGATCGCAT+GGG + chr3_3:69408547-69408566 Msa0467920:intron 30.0%
GTAGAAAAACCAACATTTAC+AGG - chr3_3:69408682-69408701 None:intergenic 30.0%
!! TTGGTTTTTCTACTTGACAT+GGG + chr3_3:69408689-69408708 Msa0467920:intron 30.0%
! TTGTTTATCCATTTTGCAGA+TGG + chr3_3:69408730-69408749 Msa0467920:intron 30.0%
! TAAAACCATGGATTTTCTTG+CGG - chr3_3:69409086-69409105 None:intergenic 30.0%
!! ATTCACATTTTCATGGGTTA+TGG - chr3_3:69409111-69409130 None:intergenic 30.0%
! TCCTGAATTCACATTTTCAT+GGG - chr3_3:69409117-69409136 None:intergenic 30.0%
!! TTAGTTTGCTTTCTTGACAT+TGG + chr3_3:69409233-69409252 Msa0467920:CDS 30.0%
TACATACATAGAAGTTACGA+TGG - chr3_3:69409259-69409278 None:intergenic 30.0%
AATGGAAATTCAATCAGTTC+AGG + chr3_3:69409359-69409378 Msa0467920:CDS 30.0%
TAGACAGAATGCCAAATATA+TGG + chr3_3:69409750-69409769 Msa0467920:CDS 30.0%
TGAGATCGAAACAAATGAAT+CGG + chr3_3:69409843-69409862 Msa0467920:CDS 30.0%
!! AAAGGTATTATAGGATAGCA+AGG - chr3_3:69410211-69410230 None:intergenic 30.0%
CTTATACCATATTTGTGCTT+TGG + chr3_3:69410294-69410313 Msa0467920:three_prime_UTR 30.0%
TATACCATATTTGTGCTTTG+GGG + chr3_3:69410296-69410315 Msa0467920:three_prime_UTR 30.0%
AAAACAAAACTCCGTTTGCT+TGG + chr3_3:69406181-69406200 Msa0467920:five_prime_UTR 35.0%
GAGTAGAGATAGAAAGAGAA+AGG + chr3_3:69406251-69406270 Msa0467920:five_prime_UTR 35.0%
TTATTAGTAGAGGAAATCGG+GGG + chr3_3:69406296-69406315 Msa0467920:five_prime_UTR 35.0%
AGGAAGATAGTTTGATGAGA+AGG - chr3_3:69406441-69406460 None:intergenic 35.0%
AAAGAGAGAAAGAGAAGAGA+GGG - chr3_3:69406491-69406510 None:intergenic 35.0%
AAAAGAGAGAAAGAGAAGAG+AGG - chr3_3:69406492-69406511 None:intergenic 35.0%
! ATTTTTCCTTTTGCATCGCA+CGG + chr3_3:69406546-69406565 Msa0467920:intron 35.0%
TTGAAGCGAATTAAGCAGTT+AGG + chr3_3:69406633-69406652 Msa0467920:intron 35.0%
ATGCTTCTAATTCCATTCCA+AGG + chr3_3:69406760-69406779 Msa0467920:intron 35.0%
AAAATATAAAATTGGGGGGG+GGG - chr3_3:69406902-69406921 None:intergenic 35.0%
AAAAAAGGAGGATAATTGCG+TGG + chr3_3:69407752-69407771 Msa0467920:intron 35.0%
TACATTCTAACCATTCGTTC+AGG + chr3_3:69407786-69407805 Msa0467920:intron 35.0%
CACATTGAACATGTATATCG+TGG + chr3_3:69407937-69407956 Msa0467920:intron 35.0%
!!! AAATGTCTATTTTGGCACCT+AGG + chr3_3:69408264-69408283 Msa0467920:intron 35.0%
!!! AATGTCTATTTTGGCACCTA+GGG + chr3_3:69408265-69408284 Msa0467920:intron 35.0%
!! ATCAGATTAGAGAGTTGATG+GGG + chr3_3:69408300-69408319 Msa0467920:intron 35.0%
AGGATTCACAACAGATAGAA+AGG - chr3_3:69408650-69408669 None:intergenic 35.0%
!!! GTTGGTTTTTCTACTTGACA+TGG + chr3_3:69408688-69408707 Msa0467920:intron 35.0%
! TGGTTTTTCTACTTGACATG+GGG + chr3_3:69408690-69408709 Msa0467920:intron 35.0%
! CTGGAAAGTCTCATAGTTTT+AGG + chr3_3:69408811-69408830 Msa0467920:CDS 35.0%
ATCCAGTACAAGTGAAGTTA+TGG + chr3_3:69408908-69408927 Msa0467920:CDS 35.0%
TTCCATAACTTCACTTGTAC+TGG - chr3_3:69408913-69408932 None:intergenic 35.0%
ACAGCCTCAAATAAATCTTC+AGG - chr3_3:69408957-69408976 None:intergenic 35.0%
! AAGCTTTTCTAAGCAATGTG+CGG + chr3_3:69409055-69409074 Msa0467920:CDS 35.0%
! AAAACCATGGATTTTCTTGC+GGG - chr3_3:69409085-69409104 None:intergenic 35.0%
ACCCATGAAAATGTGAATTC+AGG + chr3_3:69409113-69409132 Msa0467920:CDS 35.0%
! CTCCTGAATTCACATTTTCA+TGG - chr3_3:69409118-69409137 None:intergenic 35.0%
TTTCAAAGAAGGGTCATACA+TGG - chr3_3:69409141-69409160 None:intergenic 35.0%
! ATGACCCTTCTTTGAAAAAG+TGG + chr3_3:69409144-69409163 Msa0467920:CDS 35.0%
!!! GATGCCACTTTTTCAAAGAA+GGG - chr3_3:69409151-69409170 None:intergenic 35.0%
!!! TGATGCCACTTTTTCAAAGA+AGG - chr3_3:69409152-69409171 None:intergenic 35.0%
GGCAAAACAATCAACTTTGT+GGG - chr3_3:69409194-69409213 None:intergenic 35.0%
TGGCAAAACAATCAACTTTG+TGG - chr3_3:69409195-69409214 None:intergenic 35.0%
!! AAAGTTGATTGTTTTGCCAG+TGG + chr3_3:69409196-69409215 Msa0467920:CDS 35.0%
ATCTGAACGCATGAAGTATA+GGG - chr3_3:69409534-69409553 None:intergenic 35.0%
TTTCCTATGATATGGCAACA+GGG + chr3_3:69409567-69409586 Msa0467920:CDS 35.0%
AATGCCAAATATATGGTGCT+TGG + chr3_3:69409757-69409776 Msa0467920:CDS 35.0%
AAGTCCAAGCACCATATATT+TGG - chr3_3:69409764-69409783 None:intergenic 35.0%
! ATATGGTGCTTGGACTTTTA+TGG + chr3_3:69409767-69409786 Msa0467920:CDS 35.0%
ATCGAAACAAATGAATCGGT+TGG + chr3_3:69409847-69409866 Msa0467920:CDS 35.0%
TGGTTACTTACAACATAGCA+AGG + chr3_3:69409867-69409886 Msa0467920:CDS 35.0%
ACAACATAGCAAGGAAAGAA+TGG + chr3_3:69409876-69409895 Msa0467920:CDS 35.0%
TTTGGGGACAAAAAATTGGA+TGG + chr3_3:69410312-69410331 Msa0467920:three_prime_UTR 35.0%
AAACCACGTTTCCAAGCAAA+CGG - chr3_3:69406195-69406214 None:intergenic 40.0%
TTACACGAGCGGGTAAAAAA+AGG + chr3_3:69406214-69406233 Msa0467920:five_prime_UTR 40.0%
AGCGGGTAAAAAAAGGAAGA+AGG + chr3_3:69406221-69406240 Msa0467920:five_prime_UTR 40.0%
TATTAGTAGAGGAAATCGGG+GGG + chr3_3:69406297-69406316 Msa0467920:five_prime_UTR 40.0%
! AGAAGGTTGCTGTTGAAGAA+TGG - chr3_3:69406424-69406443 None:intergenic 40.0%
AAGAGAGGGAAAACTAACCT+GGG - chr3_3:69406477-69406496 None:intergenic 40.0%
! TTTTTCCTTTTGCATCGCAC+GGG + chr3_3:69406547-69406566 Msa0467920:intron 40.0%
AGCGAATTAAGCAGTTAGGT+AGG + chr3_3:69406637-69406656 Msa0467920:intron 40.0%
AGCAGTTAGGTAGGTAAGTT+AGG + chr3_3:69406646-69406665 Msa0467920:intron 40.0%
TGTATGTAATGCGTGACTGT+GGG + chr3_3:69406686-69406705 Msa0467920:intron 40.0%
!!! ATTTTAGGGCATCCTTGGAA+TGG - chr3_3:69406775-69406794 None:intergenic 40.0%
AAATATAAAATTGGGGGGGG+GGG - chr3_3:69406901-69406920 None:intergenic 40.0%
ATCAGGGAAAATGGAATTGG+TGG + chr3_3:69407013-69407032 Msa0467920:intron 40.0%
!! GAATTGGTGGACTTGAATGT+TGG + chr3_3:69407026-69407045 Msa0467920:intron 40.0%
GAACTAGGTAGAATCGCAAT+GGG + chr3_3:69407287-69407306 Msa0467920:intron 40.0%
CATCTCATCCAAGTACTCTT+GGG + chr3_3:69407392-69407411 Msa0467920:intron 40.0%
! AGCTCATTTGCTGCCAAATA+AGG - chr3_3:69407438-69407457 None:intergenic 40.0%
AGCTTCTCAAAGATCGTTGT+CGG + chr3_3:69407454-69407473 Msa0467920:intron 40.0%
CTTTAATCACGTTCCTTGTG+TGG + chr3_3:69407655-69407674 Msa0467920:intron 40.0%
CATATCAACTTGACCACACA+AGG - chr3_3:69407671-69407690 None:intergenic 40.0%
TGTGTCCTCCTCCTTAAAAA+AGG + chr3_3:69407737-69407756 Msa0467920:intron 40.0%
!!! ATCCTCCTTTTTTAAGGAGG+AGG - chr3_3:69407745-69407764 None:intergenic 40.0%
GGTACTTTACTCTAACACCA+AGG + chr3_3:69408044-69408063 Msa0467920:intron 40.0%
TGATTTGACAAAGGTTCCCT+AGG - chr3_3:69408284-69408303 None:intergenic 40.0%
AGCTTACATGCAACATTCCT+AGG + chr3_3:69408523-69408542 Msa0467920:intron 40.0%
TGGGTTATGGTGTAAAACCA+TGG - chr3_3:69409098-69409117 None:intergenic 40.0%
CCTTGAAGGATTGAGTTAGT+GGG - chr3_3:69409283-69409302 None:intergenic 40.0%
TCCTTGAAGGATTGAGTTAG+TGG - chr3_3:69409284-69409303 None:intergenic 40.0%
TTCAGGCTACAAGATCCTAT+GGG + chr3_3:69409376-69409395 Msa0467920:CDS 40.0%
!! ATGACTCGGTGAAAAACTCT+TGG + chr3_3:69409426-69409445 Msa0467920:CDS 40.0%
AGTTTGCGACCTGAAGTTAA+GGG - chr3_3:69409495-69409514 None:intergenic 40.0%
GATCTGAACGCATGAAGTAT+AGG - chr3_3:69409535-69409554 None:intergenic 40.0%
! AGGGGTTGTTTCCTATGATA+TGG + chr3_3:69409559-69409578 Msa0467920:CDS 40.0%
GTTTCCTATGATATGGCAAC+AGG + chr3_3:69409566-69409585 Msa0467920:CDS 40.0%
TTCCTATGATATGGCAACAG+GGG + chr3_3:69409568-69409587 Msa0467920:CDS 40.0%
AATAAGACCTGCAAATGGCA+AGG - chr3_3:69410052-69410071 None:intergenic 40.0%
!! TGCCATTTGCAGGTCTTATT+AGG + chr3_3:69410052-69410071 Msa0467920:three_prime_UTR 40.0%
CACCTAATAAGACCTGCAAA+TGG - chr3_3:69410057-69410076 None:intergenic 40.0%
TCTACTCTGTTAAACCAGAG+AGG - chr3_3:69410103-69410122 None:intergenic 40.0%
TTGTCCCCAAAGCACAAATA+TGG - chr3_3:69410303-69410322 None:intergenic 40.0%
!! GTGCTTTGGGGACAAAAAAT+TGG + chr3_3:69410308-69410327 Msa0467920:three_prime_UTR 40.0%
!! GAAACGTGGTTTTACACGAG+CGG + chr3_3:69406203-69406222 Msa0467920:five_prime_UTR 45.0%
!! AAACGTGGTTTTACACGAGC+GGG + chr3_3:69406204-69406223 Msa0467920:five_prime_UTR 45.0%
GAAGAGAGGGAAAACTAACC+TGG - chr3_3:69406478-69406497 None:intergenic 45.0%
CTGTATGTAATGCGTGACTG+TGG + chr3_3:69406685-69406704 Msa0467920:intron 45.0%
!!! GTTGCATTTTAGGGCATCCT+TGG - chr3_3:69406780-69406799 None:intergenic 45.0%
AATATAAAATTGGGGGGGGG+GGG - chr3_3:69406900-69406919 None:intergenic 45.0%
TGACAATCTCCTTGATCCTG+TGG + chr3_3:69406958-69406977 Msa0467920:intron 45.0%
AGAGACTAATCCCTCGAACT+AGG + chr3_3:69407272-69407291 Msa0467920:intron 45.0%
TGCGATTCTACCTAGTTCGA+GGG - chr3_3:69407285-69407304 None:intergenic 45.0%
TTGCGATTCTACCTAGTTCG+AGG - chr3_3:69407286-69407305 None:intergenic 45.0%
CGAACTAGGTAGAATCGCAA+TGG + chr3_3:69407286-69407305 Msa0467920:intron 45.0%
TTAACCAGAGGTTTAGCCCT+AGG - chr3_3:69407353-69407372 None:intergenic 45.0%
AAACCTCTGGTTAACCTGGA+AGG + chr3_3:69407359-69407378 Msa0467920:intron 45.0%
GTACTTGGATGAGATGGAGA+GGG - chr3_3:69407388-69407407 None:intergenic 45.0%
AGTACTTGGATGAGATGGAG+AGG - chr3_3:69407389-69407408 None:intergenic 45.0%
!! CCAAGAGTACTTGGATGAGA+TGG - chr3_3:69407394-69407413 None:intergenic 45.0%
CCATCTCATCCAAGTACTCT+TGG + chr3_3:69407391-69407410 Msa0467920:intron 45.0%
TTTGTCATAGCGTCGTGCAT+AGG + chr3_3:69407610-69407629 Msa0467920:intron 45.0%
GTCCTCCTCCTTAAAAAAGG+AGG + chr3_3:69407740-69407759 Msa0467920:intron 45.0%
TTGATGGGGAAAGTTCTACG+TGG + chr3_3:69408314-69408333 Msa0467920:intron 45.0%
ACATTTACAGGGACATCAGC+AGG - chr3_3:69408670-69408689 None:intergenic 45.0%
GCTGATGTCCCTGTAAATGT+TGG + chr3_3:69408670-69408689 Msa0467920:intron 45.0%
AAGGAGGTCCATCTGCAAAA+TGG - chr3_3:69408741-69408760 None:intergenic 45.0%
AGAGCTATCTTCGAGGTCAA+AGG - chr3_3:69408760-69408779 None:intergenic 45.0%
CATCTACAGAGCTATCTTCG+AGG - chr3_3:69408767-69408786 None:intergenic 45.0%
AGCTCTGTAGATGACTGTTG+TGG + chr3_3:69408774-69408793 Msa0467920:CDS 45.0%
!! TGACTGTTGTGGCCTTGTAA+TGG + chr3_3:69408785-69408804 Msa0467920:CDS 45.0%
ACTTTCCAGCTGCCATTACA+AGG - chr3_3:69408800-69408819 None:intergenic 45.0%
ATCTCTTCGAGGCTTCTTAG+CGG - chr3_3:69408862-69408881 None:intergenic 45.0%
CCAGCAAGGAATTCCATTGA+CGG - chr3_3:69409028-69409047 None:intergenic 45.0%
!! AAAGCTTTGAGAAGCCAGCA+AGG - chr3_3:69409042-69409061 None:intergenic 45.0%
AAGTCCCGCAAGAAAATCCA+TGG + chr3_3:69409078-69409097 Msa0467920:CDS 45.0%
ACAATCAACTTTGTGGGCAG+TGG - chr3_3:69409188-69409207 None:intergenic 45.0%
CCCACTAACTCAATCCTTCA+AGG + chr3_3:69409280-69409299 Msa0467920:CDS 45.0%
GTTCAGGCTACAAGATCCTA+TGG + chr3_3:69409375-69409394 Msa0467920:CDS 45.0%
AAAAACTCTTGGAGTCGTCC+AGG + chr3_3:69409437-69409456 Msa0467920:CDS 45.0%
ATACTTCCAGGCATGTTTCC+TGG - chr3_3:69409458-69409477 None:intergenic 45.0%
AATGGCAGGTTCATACTTCC+AGG - chr3_3:69409470-69409489 None:intergenic 45.0%
TGAAGTTAAGGGACAATGGC+AGG - chr3_3:69409484-69409503 None:intergenic 45.0%
TGCCATTGTCCCTTAACTTC+AGG + chr3_3:69409483-69409502 Msa0467920:CDS 45.0%
GACCTGAAGTTAAGGGACAA+TGG - chr3_3:69409488-69409507 None:intergenic 45.0%
CAGTTTGCGACCTGAAGTTA+AGG - chr3_3:69409496-69409515 None:intergenic 45.0%
TTCATGCGTTCAGATCCAGA+AGG + chr3_3:69409539-69409558 Msa0467920:CDS 45.0%
TCATGCGTTCAGATCCAGAA+GGG + chr3_3:69409540-69409559 Msa0467920:CDS 45.0%
TCATAGGAAACAACCCCTTC+TGG - chr3_3:69409557-69409576 None:intergenic 45.0%
AACCCCTGTTGCCATATCAT+AGG - chr3_3:69409573-69409592 None:intergenic 45.0%
ATGATATGGCAACAGGGGTT+TGG + chr3_3:69409573-69409592 Msa0467920:CDS 45.0%
GTGTGGTCAGTCAAATGTAG+TGG - chr3_3:69409620-69409639 None:intergenic 45.0%
CATCATACTCAGCTAGAGTG+TGG - chr3_3:69409637-69409656 None:intergenic 45.0%
CACACTCTAGCTGAGTATGA+TGG + chr3_3:69409635-69409654 Msa0467920:CDS 45.0%
TGATGGTCAGATCATGCTTG+TGG + chr3_3:69409652-69409671 Msa0467920:CDS 45.0%
GATGGTCAGATCATGCTTGT+GGG + chr3_3:69409653-69409672 Msa0467920:CDS 45.0%
AGCCACGTGTGTATGCATAT+GGG + chr3_3:69409694-69409713 Msa0467920:CDS 45.0%
TGCAGAGAATGACACTCTTG+TGG + chr3_3:69409720-69409739 Msa0467920:CDS 45.0%
GAGAATGACACTCTTGTGGA+AGG + chr3_3:69409724-69409743 Msa0467920:CDS 45.0%
AATGACACTCTTGTGGAAGG+AGG + chr3_3:69409727-69409746 Msa0467920:CDS 45.0%
! ACGTCAGAATGACTTGCCTA+GGG + chr3_3:69409795-69409814 Msa0467920:CDS 45.0%
! ATGACTTGCCTAGGGAACAA+AGG + chr3_3:69409803-69409822 Msa0467920:CDS 45.0%
AGCAAGGAAAGAATGGCTGA+AGG + chr3_3:69409883-69409902 Msa0467920:CDS 45.0%
AAAGAATGGCTGAAGGTTCC+TGG + chr3_3:69409890-69409909 Msa0467920:CDS 45.0%
AAGAATGGCTGAAGGTTCCT+GGG + chr3_3:69409891-69409910 Msa0467920:CDS 45.0%
ATTTCATCCATGCTTGACCG+CGG + chr3_3:69409964-69409983 Msa0467920:CDS 45.0%
AAGACGAGCAAAAAAGTGGC+AGG - chr3_3:69410023-69410042 None:intergenic 45.0%
CCACAAGACGAGCAAAAAAG+TGG - chr3_3:69410027-69410046 None:intergenic 45.0%
!!! CCACTTTTTTGCTCGTCTTG+TGG + chr3_3:69410024-69410043 Msa0467920:three_prime_UTR 45.0%
TTAAACCAGAGAGGAACGCT+GGG - chr3_3:69410094-69410113 None:intergenic 45.0%
!! AAATAAATAAAAGAATAATT+GGG - chr3_3:69406730-69406749 None:intergenic 5.0%
!! TAAATAAATAAAAGAATAAT+TGG - chr3_3:69406731-69406750 None:intergenic 5.0%
ACTCCGTTTGCTTGGAAACG+TGG + chr3_3:69406189-69406208 Msa0467920:five_prime_UTR 50.0%
GAGGGAAAACTAACCTGGGA+GGG - chr3_3:69406473-69406492 None:intergenic 50.0%
AGAGGGAAAACTAACCTGGG+AGG - chr3_3:69406474-69406493 None:intergenic 50.0%
!! CACGGGTAGACCTCTAGTTT+TGG + chr3_3:69406564-69406583 Msa0467920:intron 50.0%
ATATAAAATTGGGGGGGGGG+GGG - chr3_3:69406899-69406918 None:intergenic 50.0%
CAATCTCCTTGATCCTGTGG+TGG + chr3_3:69406961-69406980 Msa0467920:intron 50.0%
TCCTTGATCCTGTGGTGGTT+TGG + chr3_3:69406966-69406985 Msa0467920:intron 50.0%
CCTTGATCCTGTGGTGGTTT+GGG + chr3_3:69406967-69406986 Msa0467920:intron 50.0%
! ATCCTGTGGTGGTTTGGGTT+TGG + chr3_3:69406972-69406991 Msa0467920:intron 50.0%
TACCAAACCCAAACCACCAC+AGG - chr3_3:69406977-69406996 None:intergenic 50.0%
ACCGCCAAATACGGCTGATT+TGG + chr3_3:69407196-69407215 Msa0467920:intron 50.0%
GCCAAATCAGCCGTATTTGG+CGG - chr3_3:69407200-69407219 None:intergenic 50.0%
AGGGCCAAATCAGCCGTATT+TGG - chr3_3:69407203-69407222 None:intergenic 50.0%
CATTCCTAGGGCTAAACCTC+TGG + chr3_3:69407346-69407365 Msa0467920:intron 50.0%
GGCTAAACCTCTGGTTAACC+TGG + chr3_3:69407355-69407374 Msa0467920:intron 50.0%
CTACCTTCCAGGTTAACCAG+AGG - chr3_3:69407365-69407384 None:intergenic 50.0%
CTCATCCAAGTACTCTTGGG+TGG + chr3_3:69407395-69407414 Msa0467920:intron 50.0%
CTAACCATTCGTTCAGGCTC+AGG + chr3_3:69407792-69407811 Msa0467920:intron 50.0%
AGTACCTGAGCCTGAACGAA+TGG - chr3_3:69407799-69407818 None:intergenic 50.0%
GCTATCTTCGAGGTCAAAGG+AGG - chr3_3:69408757-69408776 None:intergenic 50.0%
TCTCTTCGAGGCTTCTTAGC+GGG - chr3_3:69408861-69408880 None:intergenic 50.0%
AAGCGGAAAAACGCGGCAAT+GGG - chr3_3:69408993-69409012 None:intergenic 50.0%
TCCATTGACGGCATACAGAG+CGG - chr3_3:69409016-69409035 None:intergenic 50.0%
CCGTCAATGGAATTCCTTGC+TGG + chr3_3:69409025-69409044 Msa0467920:CDS 50.0%
GTGGGCAGTGGTGATATAGA+CGG - chr3_3:69409176-69409195 None:intergenic 50.0%
! TTTTGCCAGTGGCTTCTGCT+GGG + chr3_3:69409207-69409226 Msa0467920:CDS 50.0%
GCTGTAGGGATGACAGTGAA+TGG + chr3_3:69409341-69409360 Msa0467920:CDS 50.0%
AGGCTACAAGATCCTATGGG+TGG + chr3_3:69409379-69409398 Msa0467920:CDS 50.0%
GGCTACAAGATCCTATGGGT+GGG + chr3_3:69409380-69409399 Msa0467920:CDS 50.0%
!! ATCCTATGGGTGGGTTGTGA+TGG + chr3_3:69409389-69409408 Msa0467920:CDS 50.0%
CATGCGTTCAGATCCAGAAG+GGG + chr3_3:69409541-69409560 Msa0467920:CDS 50.0%
CAGTCAAATGTAGTGGCGCT+GGG - chr3_3:69409613-69409632 None:intergenic 50.0%
TCAGTCAAATGTAGTGGCGC+TGG - chr3_3:69409614-69409633 None:intergenic 50.0%
CAGCCACGTGTGTATGCATA+TGG + chr3_3:69409693-69409712 Msa0467920:CDS 50.0%
CTCCCATATGCATACACACG+TGG - chr3_3:69409699-69409718 None:intergenic 50.0%
! CACGTCAGAATGACTTGCCT+AGG + chr3_3:69409794-69409813 Msa0467920:CDS 50.0%
TGAGCAAGCCTTTGTTCCCT+AGG - chr3_3:69409814-69409833 None:intergenic 50.0%
! TGGTGCCGAATGGGAAGAAA+CGG + chr3_3:69409918-69409937 Msa0467920:CDS 50.0%
! CACTGCCGTTTCTTCCCATT+CGG - chr3_3:69409926-69409945 None:intergenic 50.0%
AAACGGCAGTGGATAGCATG+TGG + chr3_3:69409935-69409954 Msa0467920:CDS 50.0%
CAAGGAAAATCAAGCCACCG+CGG - chr3_3:69409984-69410003 None:intergenic 50.0%
GGTCGTTGCTGTAAGGTACA+AGG - chr3_3:69410002-69410021 None:intergenic 50.0%
! TGTGGTTCCTTGCCATTTGC+AGG + chr3_3:69410042-69410061 Msa0467920:three_prime_UTR 50.0%
GTTAAACCAGAGAGGAACGC+TGG - chr3_3:69410095-69410114 None:intergenic 50.0%
CGCACGGGCGATTGAGTATA+TGG + chr3_3:69406130-69406149 Msa0467920:five_prime_UTR 55.0%
TAGTAGAGGAAATCGGGGGG+AGG + chr3_3:69406300-69406319 Msa0467920:five_prime_UTR 55.0%
AGTAGAGGAAATCGGGGGGA+GGG + chr3_3:69406301-69406320 Msa0467920:five_prime_UTR 55.0%
GCCATGCTGAAGCAGCTCAT+CGG + chr3_3:69406348-69406367 Msa0467920:CDS 55.0%
ACCGATGAGCTGCTTCAGCA+TGG - chr3_3:69406352-69406371 None:intergenic 55.0%
GTCTACCCGTGCGATGCAAA+AGG - chr3_3:69406555-69406574 None:intergenic 55.0%
TATAAAATTGGGGGGGGGGG+GGG - chr3_3:69406898-69406917 None:intergenic 55.0%
CCCAAACCACCACAGGATCA+AGG - chr3_3:69406970-69406989 None:intergenic 55.0%
!! TACGGCCACCCAAGAGTACT+TGG - chr3_3:69407403-69407422 None:intergenic 55.0%
CTCTTGGGTGGCCGTAATTG+TGG + chr3_3:69407407-69407426 Msa0467920:intron 55.0%
!! TGTGGCCTTGTAATGGCAGC+TGG + chr3_3:69408792-69408811 Msa0467920:CDS 55.0%
AGCCTCGAAGAGATCGAAGC+AGG + chr3_3:69408868-69408887 Msa0467920:CDS 55.0%
GCCTCGAAGAGATCGAAGCA+GGG + chr3_3:69408869-69408888 Msa0467920:CDS 55.0%
CCTCGAAGAGATCGAAGCAG+GGG + chr3_3:69408870-69408889 Msa0467920:CDS 55.0%
CGAAGCAGGGGCAAATCATC+AGG + chr3_3:69408882-69408901 Msa0467920:CDS 55.0%
GAAGCGGAAAAACGCGGCAA+TGG - chr3_3:69408994-69409013 None:intergenic 55.0%
AGAGCGGAAGCGGAAAAACG+CGG - chr3_3:69409000-69409019 None:intergenic 55.0%
TCCGCTCTGTATGCCGTCAA+TGG + chr3_3:69409012-69409031 Msa0467920:CDS 55.0%
! GTTTTGCCAGTGGCTTCTGC+TGG + chr3_3:69409206-69409225 Msa0467920:CDS 55.0%
TTTGCCAGTGGCTTCTGCTG+GGG + chr3_3:69409208-69409227 Msa0467920:CDS 55.0%
CCTTCAAGGAGTTGCCAGCT+CGG + chr3_3:69409294-69409313 Msa0467920:CDS 55.0%
GTTGCCAGCTCGGTCAGTTA+AGG + chr3_3:69409304-69409323 Msa0467920:CDS 55.0%
CAGACCTTAACTGACCGAGC+TGG - chr3_3:69409311-69409330 None:intergenic 55.0%
CAGCTCGGTCAGTTAAGGTC+TGG + chr3_3:69409309-69409328 Msa0467920:CDS 55.0%
TCTGGTCTCGCGTTGCTGTA+GGG + chr3_3:69409327-69409346 Msa0467920:CDS 55.0%
CTCCATCACAACCCACCCAT+AGG - chr3_3:69409394-69409413 None:intergenic 55.0%
AGTCGTCCAGGAAACATGCC+TGG + chr3_3:69409449-69409468 Msa0467920:CDS 55.0%
CGAATGGGAAGAAACGGCAG+TGG + chr3_3:69409924-69409943 Msa0467920:CDS 55.0%
AGTGGCAGGTCGTTGCTGTA+AGG - chr3_3:69410009-69410028 None:intergenic 55.0%
CAGAGAGGAACGCTGGGATT+AGG - chr3_3:69410088-69410107 None:intergenic 55.0%
CTAATCCCAGCGTTCCTCTC+TGG + chr3_3:69410086-69410105 Msa0467920:three_prime_UTR 55.0%
GTAGAGGAAATCGGGGGGAG+GGG + chr3_3:69406302-69406321 Msa0467920:five_prime_UTR 60.0%
TAGAGGAAATCGGGGGGAGG+GGG + chr3_3:69406303-69406322 Msa0467920:five_prime_UTR 60.0%
!! GGGGGCATTAGCGCATGGAA+GGG + chr3_3:69406322-69406341 Msa0467920:exon 60.0%
GCATTAGCGCATGGAAGGGC+TGG + chr3_3:69406326-69406345 Msa0467920:exon 60.0%
TCCTTCAGCATCACCCTCCC+AGG + chr3_3:69406457-69406476 Msa0467920:CDS 60.0%
ACCTGGGAGGGTGATGCTGA+AGG - chr3_3:69406461-69406480 None:intergenic 60.0%
ATAAAATTGGGGGGGGGGGG+GGG - chr3_3:69406897-69406916 None:intergenic 60.0%
GATGGAGAGGGCTACCTTCC+AGG - chr3_3:69407376-69407395 None:intergenic 60.0%
CAGACTGAGCCCATGCGATC+AGG - chr3_3:69408559-69408578 None:intergenic 60.0%
! TTAGCGGGTGGAGGCTTCAG+AGG - chr3_3:69408846-69408865 None:intergenic 60.0%
CTTCGAGGCTTCTTAGCGGG+TGG - chr3_3:69408858-69408877 None:intergenic 60.0%
CCCCTGCTTCGATCTCTTCG+AGG - chr3_3:69408873-69408892 None:intergenic 60.0%
GACGGCATACAGAGCGGAAG+CGG - chr3_3:69409010-69409029 None:intergenic 60.0%
TTGCCAGTGGCTTCTGCTGG+GGG + chr3_3:69409209-69409228 Msa0467920:CDS 60.0%
AAACCCCCAGCAGAAGCCAC+TGG - chr3_3:69409215-69409234 None:intergenic 60.0%
CCGAGCTGGCAACTCCTTGA+AGG - chr3_3:69409297-69409316 None:intergenic 60.0%
GTCTGGTCTCGCGTTGCTGT+AGG + chr3_3:69409326-69409345 Msa0467920:CDS 60.0%
GCTGAAGGTTCCTGGGTGTG+TGG + chr3_3:69409898-69409917 Msa0467920:CDS 60.0%
! CTGGGTGTGTGGTGCCGAAT+GGG + chr3_3:69409909-69409928 Msa0467920:CDS 60.0%
TCATCCATGCTTGACCGCGG+TGG + chr3_3:69409967-69409986 Msa0467920:CDS 60.0%
AGAGGAAATCGGGGGGAGGG+GGG + chr3_3:69406304-69406323 Msa0467920:five_prime_UTR 65.0%
!! GGGGGGCATTAGCGCATGGA+AGG + chr3_3:69406321-69406340 Msa0467920:exon 65.0%
! CGAGGCTTCTTAGCGGGTGG+AGG - chr3_3:69408855-69408874 None:intergenic 65.0%
CCATTCGGCACCACACACCC+AGG - chr3_3:69409911-69409930 None:intergenic 65.0%
! CCTGGGTGTGTGGTGCCGAA+TGG + chr3_3:69409908-69409927 Msa0467920:CDS 65.0%
CAAGCCACCGCGGTCAAGCA+TGG - chr3_3:69409974-69409993 None:intergenic 65.0%
!! GGGAGGGGGGCATTAGCGCA+TGG + chr3_3:69406317-69406336 Msa0467920:exon 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 69406129 69410355 69406129 ID=Msa0467920;Name=Msa0467920
chr3_3 mRNA 69406129 69410355 69406129 ID=Msa0467920-mRNA-1;Parent=Msa0467920;Name=Msa0467920-mRNA-1;_AED=0.00;_eAED=0.00;_QI=207|1|1|1|1|1|2|361|462
chr3_3 exon 69406129 69406478 69406129 ID=Msa0467920-mRNA-1:exon:16414;Parent=Msa0467920-mRNA-1
chr3_3 exon 69408749 69410355 69408749 ID=Msa0467920-mRNA-1:exon:16415;Parent=Msa0467920-mRNA-1
chr3_3 five_prime_UTR 69406129 69406335 69406129 ID=Msa0467920-mRNA-1:five_prime_utr;Parent=Msa0467920-mRNA-1
chr3_3 CDS 69406336 69406478 69406336 ID=Msa0467920-mRNA-1:cds;Parent=Msa0467920-mRNA-1
chr3_3 CDS 69408749 69409994 69408749 ID=Msa0467920-mRNA-1:cds;Parent=Msa0467920-mRNA-1
chr3_3 three_prime_UTR 69409995 69410355 69409995 ID=Msa0467920-mRNA-1:three_prime_utr;Parent=Msa0467920-mRNA-1
Gene Sequence

>Msa0467920

ATGGAAGGGCTGGCCATGCTGAAGCAGCTCATCGGTCAGCTTCAGCAACTTCTCGACTCTCATCATCATTCTTCTTCTTCTTCTTCCATTCTTCAACAGCAACCTTCTCATCAAACTATCTTCCTTCAGCATCACCCTCCCAGATGGACCTCCTTTGACCTCGAAGATAGCTCTGTAGATGACTGTTGTGGCCTTGTAATGGCAGCTGGAAAGTCTCATAGTTTTAGGATGTCAGAGCCTCTGAAGCCTCCACCCGCTAAGAAGCCTCGAAGAGATCGAAGCAGGGGCAAATCATCAGGAAGATCCAGTACAAGTGAAGTTATGGAACAAGAAATATGGAAAGATTTTCCTGAAGATTTATTTGAGGCTGTAATTGCACGACTTCCCATTGCCGCGTTTTTCCGCTTCCGCTCTGTATGCCGTCAATGGAATTCCTTGCTGGCTTCTCAAAGCTTTTCTAAGCAATGTGCGGAAGTCCCGCAAGAAAATCCATGGTTTTACACCATAACCCATGAAAATGTGAATTCAGGAGCCATGTATGACCCTTCTTTGAAAAAGTGGCATCATCCGTCTATATCACCACTGCCCACAAAGTTGATTGTTTTGCCAGTGGCTTCTGCTGGGGGTTTAGTTTGCTTTCTTGACATTGGCCATCGTAACTTCTATGTATGTAACCCACTAACTCAATCCTTCAAGGAGTTGCCAGCTCGGTCAGTTAAGGTCTGGTCTCGCGTTGCTGTAGGGATGACAGTGAATGGAAATTCAATCAGTTCAGGCTACAAGATCCTATGGGTGGGTTGTGATGGAGAATATGAAGTTTATGACTCGGTGAAAAACTCTTGGAGTCGTCCAGGAAACATGCCTGGAAGTATGAACCTGCCATTGTCCCTTAACTTCAGGTCGCAAACTGTCTCTATTGACAGTACCCTATACTTCATGCGTTCAGATCCAGAAGGGGTTGTTTCCTATGATATGGCAACAGGGGTTTGGAAACAGTACATAATCCCAGCGCCACTACATTTGACTGACCACACTCTAGCTGAGTATGATGGTCAGATCATGCTTGTGGGCTTGCTCACAAAGAATGCAGCCACGTGTGTATGCATATGGGAGCTGCAGAGAATGACACTCTTGTGGAAGGAGGTAGACAGAATGCCAAATATATGGTGCTTGGACTTTTATGGTAAGCACGTCAGAATGACTTGCCTAGGGAACAAAGGCTTGCTCATGTTGTCTCTGAGATCGAAACAAATGAATCGGTTGGTTACTTACAACATAGCAAGGAAAGAATGGCTGAAGGTTCCTGGGTGTGTGGTGCCGAATGGGAAGAAACGGCAGTGGATAGCATGTGGTACTGCATTTCATCCATGCTTGACCGCGGTGGCTTGA

Protein sequence

>Msa0467920

MEGLAMLKQLIGQLQQLLDSHHHSSSSSSILQQQPSHQTIFLQHHPPRWTSFDLEDSSVDDCCGLVMAAGKSHSFRMSEPLKPPPAKKPRRDRSRGKSSGRSSTSEVMEQEIWKDFPEDLFEAVIARLPIAAFFRFRSVCRQWNSLLASQSFSKQCAEVPQENPWFYTITHENVNSGAMYDPSLKKWHHPSISPLPTKLIVLPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTVNGNSISSGYKILWVGCDGEYEVYDSVKNSWSRPGNMPGSMNLPLSLNFRSQTVSIDSTLYFMRSDPEGVVSYDMATGVWKQYIIPAPLHLTDHTLAEYDGQIMLVGLLTKNAATCVCIWELQRMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSKQMNRLVTYNIARKEWLKVPGCVVPNGKKRQWIACGTAFHPCLTAVA*