AlfalfaGEDB | Msa1433890

M. sativa cultivar zhongmu-4 / Msa1433890

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1433890	KEH39203.1	81.633	49	9	0	4	52	3	51	5.55e-19	83.6

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1433890	A0A072VCL4	81.633	49	9	0	4	52	3	51	2.65e-19	83.6

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0038350	Msa1433890	0.801479	8.829960e-49	-8.615850e-47
Msa0200950	Msa1433890	0.809532	1.805963e-50	-8.615850e-47
Msa0220970	Msa1433890	0.946775	2.420132e-105	-8.615850e-47
Msa0262420	Msa1433890	0.864004	1.660800e-64	-8.615850e-47
Msa0272480	Msa1433890	0.815226	1.030263e-51	-8.615850e-47
Msa0300300	Msa1433890	0.947122	1.241892e-105	-8.615850e-47
Msa0312690	Msa1433890	0.808447	3.083900e-50	-8.615850e-47
Msa0350620	Msa1433890	-0.837460	5.130103e-57	-8.615850e-47
Msa0374250	Msa1433890	-0.817471	3.241676e-52	-8.615850e-47
Msa0374330	Msa1433890	-0.807203	5.668186e-50	-8.615850e-47

Showing 1 to 10 of 27 entries

Previous1 2 3Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1433890	MtrunA17_Chr2g0325041	81.633	49	9	0	4	52	3	51	7.38e-23	83.2

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 95 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGATGTCAGTTCCAG+AGG	0.606435	tig0027435:+29546	None:intergenic
AAACTGGAGGCTGTTGTTGT+TGG	0.455936	tig0027435:+31867	None:intergenic
AAAGAACCGATTCGACCCAA+CGG	0.649372	tig0027435:+31794	None:intergenic
AAATGCAAGAAGAAGAAAGA+AGG	0.510872	tig0027435:+32226	None:intergenic
AAATGGGTTTGGGTGTGGGT+CGG	0.388508	tig0027435:+31936	None:intergenic
AAATTGATGTCAGTTCCAGA+GGG	0.658418	tig0027435:+29547	None:intergenic
AACCCCGGACGAAGATGCGG+CGG	0.626124	tig0027435:+31692	None:intergenic
AACTGCAGAATACGAAGCGG+AGG	0.631412	tig0027435:+31997	None:intergenic
AACTTGCGACCCAAGTCTGG+TGG	0.558391	tig0027435:-31641	Msa1433890:five_prime_UTR
AAGAAGAAGAAGAAAGAGAA+GGG	0.496336	tig0027435:+32029	None:intergenic

Showing 1 to 10 of 95 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATGCAAGAAGAAGAAAGA+AGG	+	tig0027435:29435-29454	None:intergenic	30.0%
AAGAAGAAGAAGAAAGAGAA+GGG	+	tig0027435:29632-29651	None:intergenic	30.0%
CATAATCATCCACTAGAATT+GGG	+	tig0027435:30095-30114	None:intergenic	30.0%
TCATAATCATCCACTAGAAT+TGG	+	tig0027435:30096-30115	None:intergenic	30.0%
TCCTTATATATCCATAAGGT+TGG	-	tig0027435:30858-30877	Msa1433890:intron	30.0%
CCTTATATATCCATAAGGTT+GGG	-	tig0027435:30859-30878	Msa1433890:intron	30.0%
CATAGTACTTCTTAAGAAGA+TGG	-	tig0027435:30949-30968	Msa1433890:intron	30.0%
ATTTGGTAAAAGCTACACTT+TGG	-	tig0027435:31245-31264	Msa1433890:intron	30.0%
ACAGCTACACATGAAAATTA+CGG	+	tig0027435:31294-31313	None:intergenic	30.0%
CTTAAGTACGTGAATGAAAT+TGG	-	tig0027435:31845-31864	Msa1433890:five_prime_UTR	30.0%

Showing 1 to 10 of 213 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
tig0027435	gene	29416	32264	29416	ID=Msa1433890;Name=Msa1433890
tig0027435	mRNA	29416	32264	29416	ID=Msa1433890-mRNA-1;Parent=Msa1433890;Name=Msa1433890-mRNA-1;_AED=0.11;_eAED=0.15;_QI=690\|0\|0.5\|1\|0\|0\|2\|0\|64
tig0027435	exon	29416	29595	29416	ID=Msa1433890-mRNA-1:exon:8905;Parent=Msa1433890-mRNA-1
tig0027435	exon	31560	32264	31560	ID=Msa1433890-mRNA-1:exon:8904;Parent=Msa1433890-mRNA-1
tig0027435	five_prime_UTR	31575	32264	31575	ID=Msa1433890-mRNA-1:five_prime_utr;Parent=Msa1433890-mRNA-1
tig0027435	CDS	31560	31574	31560	ID=Msa1433890-mRNA-1:cds;Parent=Msa1433890-mRNA-1
tig0027435	CDS	29416	29595	29416	ID=Msa1433890-mRNA-1:cds;Parent=Msa1433890-mRNA-1

Gene Sequence	>Msa1433890 ATGATTATGATCATGAACAGTTCTCTGTACATATCCTTTGTCCCTCTGGAACTGACATCAATTTTCACAAGATGGCATCTGAAATCATTGAAGATGAAACATGACCAGAAGACAGATTCTCAACACCTAACATCGCAATTTGTAACCGAAATTTGTAATGATTCACAAGATGATTTGGTTCTTGTTTACCACTGA
Protein sequence	>Msa1433890 MIMIMNSSLYISFVPLELTSIFTRWHLKSLKMKHDQKTDSQHLTSQFVTEICNDSQDDLVLVYH*