Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433890 | KEH39203.1 | 81.633 | 49 | 9 | 0 | 4 | 52 | 3 | 51 | 5.55e-19 | 83.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433890 | A0A072VCL4 | 81.633 | 49 | 9 | 0 | 4 | 52 | 3 | 51 | 2.65e-19 | 83.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038350 | Msa1433890 | 0.801479 | 8.829960e-49 | -8.615850e-47 |
| Msa1364470 | Msa1433890 | 0.827920 | 1.198093e-54 | -8.615850e-47 |
| Msa1390120 | Msa1433890 | -0.817448 | 3.281140e-52 | -8.615850e-47 |
| Msa1395530 | Msa1433890 | -0.820928 | 5.292738e-53 | -8.615850e-47 |
| Msa1400610 | Msa1433890 | 0.802526 | 5.380709e-49 | -8.615850e-47 |
| Msa1429360 | Msa1433890 | 0.814880 | 1.229775e-51 | -8.615850e-47 |
| Msa0802470 | Msa1433890 | 0.805088 | 1.580548e-49 | -8.615850e-47 |
| Msa0200950 | Msa1433890 | 0.809532 | 1.805963e-50 | -8.615850e-47 |
| Msa0220970 | Msa1433890 | 0.946775 | 2.420132e-105 | -8.615850e-47 |
| Msa1245940 | Msa1433890 | 0.802709 | 4.933684e-49 | -8.615850e-47 |
| Msa1259070 | Msa1433890 | 0.806012 | 1.011279e-49 | -8.615850e-47 |
| Msa1269580 | Msa1433890 | 0.814556 | 1.450525e-51 | -8.615850e-47 |
| Msa1335860 | Msa1433890 | -0.815777 | 7.770519e-52 | -8.615850e-47 |
| Msa0374250 | Msa1433890 | -0.817471 | 3.241676e-52 | -8.615850e-47 |
| Msa0374330 | Msa1433890 | -0.807203 | 5.668186e-50 | -8.615850e-47 |
| Msa0374410 | Msa1433890 | -0.813260 | 2.800605e-51 | -8.615850e-47 |
| Msa0436280 | Msa1433890 | 0.818105 | 2.331134e-52 | -8.615850e-47 |
| Msa0467920 | Msa1433890 | 0.826022 | 3.406550e-54 | -8.615850e-47 |
| Msa0469820 | Msa1433890 | -0.809842 | 1.549218e-50 | -8.615850e-47 |
| Msa0981820 | Msa1433890 | 0.814448 | 1.532805e-51 | -8.615850e-47 |
| Msa1040120 | Msa1433890 | -0.807953 | 3.929082e-50 | -8.615850e-47 |
| Msa0262420 | Msa1433890 | 0.864004 | 1.660800e-64 | -8.615850e-47 |
| Msa0272480 | Msa1433890 | 0.815226 | 1.030263e-51 | -8.615850e-47 |
| Msa0300300 | Msa1433890 | 0.947122 | 1.241892e-105 | -8.615850e-47 |
| Msa0312690 | Msa1433890 | 0.808447 | 3.083900e-50 | -8.615850e-47 |
| Msa0350620 | Msa1433890 | -0.837460 | 5.130103e-57 | -8.615850e-47 |
| Msa1208890 | Msa1433890 | 0.807061 | 6.074459e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433890 | MtrunA17_Chr2g0325041 | 81.633 | 49 | 9 | 0 | 4 | 52 | 3 | 51 | 7.38e-23 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 95 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGGGTCTGATACGGGTTT+TGG | 0.179646 | tig0027435:-31596 | Msa1433890:five_prime_UTR |
| TCTGCAAACAAACTGGTTTA+TGG | 0.217646 | tig0027435:-32146 | Msa1433890:five_prime_UTR |
| GAGAGGATGAGGAAGGTTTC+TGG | 0.226601 | tig0027435:-31614 | Msa1433890:five_prime_UTR |
| TGCCGAGGGAGGAGTGTCTT+AGG | 0.240149 | tig0027435:-31667 | Msa1433890:five_prime_UTR |
| CTTTGAAGCGTTGTTGGTTT+TGG | 0.257075 | tig0027435:+32054 | None:intergenic |
| TCTTTCTCGCCGTTCAAAAC+CGG | 0.266026 | tig0027435:+31749 | None:intergenic |
| TTGTGAATCATTACAAATTT+CGG | 0.267761 | tig0027435:+29443 | None:intergenic |
| TGTTGGATCGGGTTGGGTTT+GGG | 0.289585 | tig0027435:+31884 | None:intergenic |
| GTAGATGTGGTTGAAGTTAA+TGG | 0.296091 | tig0027435:+32102 | None:intergenic |
| TTGTTGGATCGGGTTGGGTT+TGG | 0.297089 | tig0027435:+31883 | None:intergenic |
| TCATAATCATCCACTAGAAT+TGG | 0.305471 | tig0027435:+31565 | None:intergenic |
| TAATGATTCACAAGATGATT+TGG | 0.306096 | tig0027435:-29433 | Msa1433890:CDS |
| ATGTGAAATGGGTTTGGGTG+TGG | 0.311571 | tig0027435:+31931 | None:intergenic |
| TTGGGCTGTGATTGTGCGGG+TGG | 0.336985 | tig0027435:+31902 | None:intergenic |
| GGGTGGGGTTGGATGTGAAA+TGG | 0.337055 | tig0027435:+31919 | None:intergenic |
| CGGTTACAAATTGCGATGTT+AGG | 0.340431 | tig0027435:+29463 | None:intergenic |
| GGTTGGATGTGAAATGGGTT+TGG | 0.349429 | tig0027435:+31925 | None:intergenic |
| GGTGGGGTTGGATGTGAAAT+GGG | 0.353408 | tig0027435:+31920 | None:intergenic |
| TTCAATCTCGCTTCGTCCGT+TGG | 0.354260 | tig0027435:-31810 | Msa1433890:five_prime_UTR |
| CTTTCTCGCCGTTCAAAACC+GGG | 0.355045 | tig0027435:+31750 | None:intergenic |
| TCGCCGTTCAAAACCGGGTT+CGG | 0.362760 | tig0027435:+31755 | None:intergenic |
| GGTGTTGAGAATCTGTCTTC+TGG | 0.363513 | tig0027435:+29484 | None:intergenic |
| CCTCTCATTCCCACCAGACT+TGG | 0.365997 | tig0027435:+31631 | None:intergenic |
| AATGGGTTTGGGTGTGGGTC+GGG | 0.366489 | tig0027435:+31937 | None:intergenic |
| GTTGGATGTGAAATGGGTTT+GGG | 0.371160 | tig0027435:+31926 | None:intergenic |
| TGTGCCGCCGCATCTTCGTC+CGG | 0.384242 | tig0027435:-31696 | Msa1433890:five_prime_UTR |
| AAATGGGTTTGGGTGTGGGT+CGG | 0.388508 | tig0027435:+31936 | None:intergenic |
| AGATCGACCCCGGTCTGAAC+CGG | 0.391141 | tig0027435:-31840 | Msa1433890:five_prime_UTR |
| GTACATATCCTTTGTCCCTC+TGG | 0.393138 | tig0027435:-29562 | Msa1433890:CDS |
| TCAATCTCGCTTCGTCCGTT+GGG | 0.395438 | tig0027435:-31809 | Msa1433890:five_prime_UTR |
| TGTGATTGTGCGGGTGGGGT+TGG | 0.395841 | tig0027435:+31908 | None:intergenic |
| CTCTCTCTCTGCAAACAAAC+TGG | 0.399039 | tig0027435:-32153 | Msa1433890:five_prime_UTR |
| AGGATTCGACCATGTTTGTT+TGG | 0.403367 | tig0027435:+31968 | None:intergenic |
| TGGGCTGTGATTGTGCGGGT+GGG | 0.405665 | tig0027435:+31903 | None:intergenic |
| TGTTGTTGTTGGATCGGGTT+GGG | 0.408930 | tig0027435:+31878 | None:intergenic |
| GAAGGTTTCTGGGTCTGATA+CGG | 0.416702 | tig0027435:-31603 | Msa1433890:five_prime_UTR |
| CGGGGTCGATCTGAAGAAAC+TGG | 0.419897 | tig0027435:+31851 | None:intergenic |
| GGACGAAGCGAGATTGAATC+TGG | 0.420282 | tig0027435:+31815 | None:intergenic |
| TGTGAAATGGGTTTGGGTGT+GGG | 0.421896 | tig0027435:+31932 | None:intergenic |
| GTGCCGCCGCATCTTCGTCC+GGG | 0.426862 | tig0027435:-31695 | Msa1433890:five_prime_UTR |
| TCGAATCGGTTCTTTGTCGT+CGG | 0.435485 | tig0027435:-31786 | Msa1433890:five_prime_UTR |
| AGGGTTCTTTGAAGCGTTGT+TGG | 0.436197 | tig0027435:+32048 | None:intergenic |
| GGGCTGTGATTGTGCGGGTG+GGG | 0.445432 | tig0027435:+31904 | None:intergenic |
| TCGTCCGGGGTTTGTGCCGA+GGG | 0.450244 | tig0027435:-31681 | Msa1433890:five_prime_UTR |
| ATCTGGTCCCGGTTCAGACC+GGG | 0.453477 | tig0027435:+31832 | None:intergenic |
| GAAAACTTGCGACCCAAGTC+TGG | 0.455303 | tig0027435:-31644 | Msa1433890:five_prime_UTR |
| AAACTGGAGGCTGTTGTTGT+TGG | 0.455936 | tig0027435:+31867 | None:intergenic |
| AGAGGATGAGGAAGGTTTCT+GGG | 0.456615 | tig0027435:-31613 | Msa1433890:five_prime_UTR |
| CTGTTGTTGTTGGATCGGGT+TGG | 0.464894 | tig0027435:+31877 | None:intergenic |
| CATAATCATCCACTAGAATT+GGG | 0.469664 | tig0027435:+31566 | None:intergenic |
| CTTCGTCCGTTGGGTCGAAT+CGG | 0.470054 | tig0027435:-31800 | Msa1433890:five_prime_UTR |
| CGAATCGGTTCTTTGTCGTC+GGG | 0.470387 | tig0027435:-31785 | Msa1433890:five_prime_UTR |
| CTGGTGGGAATGAGAGGATG+AGG | 0.472518 | tig0027435:-31625 | Msa1433890:five_prime_UTR |
| GGGTTTGGGCTGTGATTGTG+CGG | 0.473346 | tig0027435:+31898 | None:intergenic |
| CTAGTGGATGATTATGATCA+TGG | 0.476961 | tig0027435:-31559 | Msa1433890:intron |
| TCCCTAAGACACTCCTCCCT+CGG | 0.483826 | tig0027435:+31665 | None:intergenic |
| CTCTCATTCCCACCAGACTT+GGG | 0.484303 | tig0027435:+31632 | None:intergenic |
| GAGGCTGTTGTTGTTGGATC+GGG | 0.484796 | tig0027435:+31873 | None:intergenic |
| CGAGAAAGAGAAGAGTTTGC+CGG | 0.486001 | tig0027435:-31735 | Msa1433890:five_prime_UTR |
| TCCTCCCTCGGCACAAACCC+CGG | 0.493049 | tig0027435:+31677 | None:intergenic |
| AAGGTTTCTGGGTCTGATAC+GGG | 0.495133 | tig0027435:-31602 | Msa1433890:five_prime_UTR |
| AAGAAGAAGAAGAAAGAGAA+GGG | 0.496336 | tig0027435:+32029 | None:intergenic |
| GCAAGAAGAAGAAAGAAGGA+AGG | 0.498038 | tig0027435:+32230 | None:intergenic |
| TTCGTCCGGGGTTTGTGCCG+AGG | 0.499430 | tig0027435:-31682 | Msa1433890:five_prime_UTR |
| GGAGGCTGTTGTTGTTGGAT+CGG | 0.500195 | tig0027435:+31872 | None:intergenic |
| AGAATACGAAGCGGAGGAGA+AGG | 0.505453 | tig0027435:+32003 | None:intergenic |
| GCCGAGGGAGGAGTGTCTTA+GGG | 0.509355 | tig0027435:-31666 | Msa1433890:five_prime_UTR |
| AAATGCAAGAAGAAGAAAGA+AGG | 0.510872 | tig0027435:+32226 | None:intergenic |
| AATCTGGTCCCGGTTCAGAC+CGG | 0.519367 | tig0027435:+31831 | None:intergenic |
| AGCGAGATTGAATCTGGTCC+CGG | 0.526016 | tig0027435:+31821 | None:intergenic |
| GATCGACCCCGGTCTGAACC+GGG | 0.543684 | tig0027435:-31839 | Msa1433890:five_prime_UTR |
| CCAAGTCTGGTGGGAATGAG+AGG | 0.547204 | tig0027435:-31631 | Msa1433890:five_prime_UTR |
| GGGAATCGACCCAATTCTAG+TGG | 0.555420 | tig0027435:-31575 | Msa1433890:five_prime_UTR |
| AACTTGCGACCCAAGTCTGG+TGG | 0.558391 | tig0027435:-31641 | Msa1433890:five_prime_UTR |
| GGTTTGGGCTGTGATTGTGC+GGG | 0.560295 | tig0027435:+31899 | None:intergenic |
| TGCCGCCGCATCTTCGTCCG+GGG | 0.561537 | tig0027435:-31694 | Msa1433890:five_prime_UTR |
| TCCGGGGTTTGTGCCGAGGG+AGG | 0.569379 | tig0027435:-31678 | Msa1433890:five_prime_UTR |
| TGGGAATGAGAGGATGAGGA+AGG | 0.570759 | tig0027435:-31621 | Msa1433890:five_prime_UTR |
| CAGTTTCTTCAGATCGACCC+CGG | 0.573018 | tig0027435:-31850 | Msa1433890:five_prime_UTR |
| AAGAGTTTGCCGGTGAAAAG+TGG | 0.574187 | tig0027435:-31725 | Msa1433890:five_prime_UTR |
| TGGGTTTGTTATCGTAGATG+TGG | 0.577249 | tig0027435:+32089 | None:intergenic |
| TCGACCATGTTTGTTTGGTG+CGG | 0.590196 | tig0027435:+31973 | None:intergenic |
| ACAAACCCCGGACGAAGATG+CGG | 0.590708 | tig0027435:+31689 | None:intergenic |
| TCTGGTCCCGGTTCAGACCG+GGG | 0.604345 | tig0027435:+31833 | None:intergenic |
| AAAATTGATGTCAGTTCCAG+AGG | 0.606435 | tig0027435:+29546 | None:intergenic |
| GTGTGGGTCGGGTTAAAACG+AGG | 0.611653 | tig0027435:+31948 | None:intergenic |
| TGTCAGTTCCAGAGGGACAA+AGG | 0.616152 | tig0027435:+29554 | None:intergenic |
| ACTTGCGACCCAAGTCTGGT+GGG | 0.619752 | tig0027435:-31640 | Msa1433890:five_prime_UTR |
| AACCCCGGACGAAGATGCGG+CGG | 0.626124 | tig0027435:+31692 | None:intergenic |
| AACTGCAGAATACGAAGCGG+AGG | 0.631412 | tig0027435:+31997 | None:intergenic |
| AAAGAACCGATTCGACCCAA+CGG | 0.649372 | tig0027435:+31794 | None:intergenic |
| GTTTCCGCACCAAACAAACA+TGG | 0.657064 | tig0027435:-31977 | Msa1433890:five_prime_UTR |
| AAATTGATGTCAGTTCCAGA+GGG | 0.658418 | tig0027435:+29547 | None:intergenic |
| GGTCGATCTGAAGAAACTGG+AGG | 0.681748 | tig0027435:+31854 | None:intergenic |
| GGAAACTGCAGAATACGAAG+CGG | 0.759361 | tig0027435:+31994 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATATGATGAAATTAAT+TGG | - | tig0027435:30312-30331 | Msa1433890:intron | 10.0% |
| !! | TAAATATGATGAAATTAATT+GGG | - | tig0027435:30313-30332 | Msa1433890:intron | 10.0% |
| !! | TTTCTAAATTAGTTAACATA+TGG | + | tig0027435:30260-30279 | None:intergenic | 15.0% |
| !!! | AATCACTTATATAGTATTTT+AGG | - | tig0027435:30420-30439 | Msa1433890:intron | 15.0% |
| !! | GAATGATAACATTAATTATA+TGG | - | tig0027435:30557-30576 | Msa1433890:intron | 15.0% |
| !!! | TTTTTTTTTTTTTGGATGAA+GGG | + | tig0027435:31563-31582 | None:intergenic | 15.0% |
| !!! | TTTTCTTGATTGTTCTTTAA+TGG | - | tig0027435:30184-30203 | Msa1433890:intron | 20.0% |
| !! | CAACAAAATATCATATTTGA+TGG | + | tig0027435:30615-30634 | None:intergenic | 20.0% |
| !! | TATATTTCTTTAACATGATC+TGG | + | tig0027435:31080-31099 | None:intergenic | 20.0% |
| !! | ATAAAACCATATATACATGT+AGG | - | tig0027435:31112-31131 | Msa1433890:intron | 20.0% |
| !!! | TAGGAGTTATTTTTTGTTTA+GGG | - | tig0027435:31131-31150 | Msa1433890:intron | 20.0% |
| !! | GATTCTAAGTAAAACTAAAT+TGG | + | tig0027435:31490-31509 | None:intergenic | 20.0% |
| !!! | TTTAGTTTTACTTAGAATCA+TGG | - | tig0027435:31491-31510 | Msa1433890:intron | 20.0% |
| !!! | GTTTTTTTTTTTTTGGATGA+AGG | + | tig0027435:31564-31583 | None:intergenic | 20.0% |
| !!! | CCATTCAGTTTTTTTTTTTT+TGG | + | tig0027435:31571-31590 | None:intergenic | 20.0% |
| !! | CCAAAAAAAAAAAAACTGAA+TGG | - | tig0027435:31568-31587 | Msa1433890:exon | 20.0% |
| !! | TTGTATGTCTAATATGTAAA+AGG | - | tig0027435:31789-31808 | Msa1433890:five_prime_UTR | 20.0% |
| !! | TGTATGTCTAATATGTAAAA+GGG | - | tig0027435:31790-31809 | Msa1433890:five_prime_UTR | 20.0% |
| !!! | ATGAAATTGGTTTATGAAAT+TGG | - | tig0027435:31858-31877 | Msa1433890:five_prime_UTR | 20.0% |
| !! | TTGTGAATCATTACAAATTT+CGG | + | tig0027435:32218-32237 | None:intergenic | 20.0% |
| !!! | TTTGCTTGTATTTTAGGATT+TGG | - | tig0027435:30337-30356 | Msa1433890:intron | 25.0% |
| !! | TGGAGGATTTTATTATTATG+TGG | - | tig0027435:30357-30376 | Msa1433890:intron | 25.0% |
| !!! | CACTTATATAGTATTTTAGG+TGG | - | tig0027435:30423-30442 | Msa1433890:intron | 25.0% |
| ! | GATAAATAAGTATTCGTGAA+AGG | - | tig0027435:30462-30481 | Msa1433890:intron | 25.0% |
| ! | GTTCTAATAACTATGATATG+AGG | - | tig0027435:30770-30789 | Msa1433890:intron | 25.0% |
| ! | TAACTCCTTATATATCCATA+AGG | - | tig0027435:30854-30873 | Msa1433890:intron | 25.0% |
| !! | TAATTTTATTCCCAACCTTA+TGG | + | tig0027435:30872-30891 | None:intergenic | 25.0% |
| !! | TTATTTGATGACAAAACAGT+TGG | + | tig0027435:31001-31020 | None:intergenic | 25.0% |
| ! | AGAAATCTCTTGTACAAAAA+TGG | - | tig0027435:31032-31051 | Msa1433890:intron | 25.0% |
| ! | ATAACTCCTACATGTATATA+TGG | + | tig0027435:31121-31140 | None:intergenic | 25.0% |
| !!! | GTAGGAGTTATTTTTTGTTT+AGG | - | tig0027435:31130-31149 | Msa1433890:intron | 25.0% |
| !!! | AGGAGTTATTTTTTGTTTAG+GGG | - | tig0027435:31132-31151 | Msa1433890:intron | 25.0% |
| !!! | ATAATTTTAAATGGTTTGCC+CGG | - | tig0027435:31667-31686 | Msa1433890:five_prime_UTR | 25.0% |
| ! | TGAAGAGTTTAACATCATAT+GGG | + | tig0027435:31762-31781 | None:intergenic | 25.0% |
| ! | ATGAAGAGTTTAACATCATA+TGG | + | tig0027435:31763-31782 | None:intergenic | 25.0% |
| ! | CTTAAATACGTGAATGAAAT+TGG | - | tig0027435:31890-31909 | Msa1433890:five_prime_UTR | 25.0% |
| !! | AATAGGTTAATTCTTTTCAG+AGG | - | tig0027435:32013-32032 | Msa1433890:five_prime_UTR | 25.0% |
| ! | TAATGATTCACAAGATGATT+TGG | - | tig0027435:32225-32244 | Msa1433890:five_prime_UTR | 25.0% |
| AAATGCAAGAAGAAGAAAGA+AGG | + | tig0027435:29435-29454 | None:intergenic | 30.0% | |
| AAGAAGAAGAAGAAAGAGAA+GGG | + | tig0027435:29632-29651 | None:intergenic | 30.0% | |
| !! | ACAAATTTACCACTTTTCAC+CGG | + | tig0027435:29945-29964 | None:intergenic | 30.0% |
| CATAATCATCCACTAGAATT+GGG | + | tig0027435:30095-30114 | None:intergenic | 30.0% | |
| TCATAATCATCCACTAGAAT+TGG | + | tig0027435:30096-30115 | None:intergenic | 30.0% | |
| !! | TTGGGATTTGCTTGTATTTT+AGG | - | tig0027435:30331-30350 | Msa1433890:intron | 30.0% |
| !!! | ATGTGTGTATCTTTTGAGTT+TGG | - | tig0027435:30383-30402 | Msa1433890:intron | 30.0% |
| !! | TGTTTCATGAGAGCATTTAA+AGG | - | tig0027435:30525-30544 | Msa1433890:intron | 30.0% |
| !! | GTTTCATGAGAGCATTTAAA+GGG | - | tig0027435:30526-30545 | Msa1433890:intron | 30.0% |
| !!! | GAGCATTTAAAGGGTATTTT+TGG | - | tig0027435:30535-30554 | Msa1433890:intron | 30.0% |
| !! | TTGCTTATATTTGAGTTGCA+AGG | - | tig0027435:30632-30651 | Msa1433890:intron | 30.0% |
| !! | TGCTTATATTTGAGTTGCAA+GGG | - | tig0027435:30633-30652 | Msa1433890:intron | 30.0% |
| TCCTTATATATCCATAAGGT+TGG | - | tig0027435:30858-30877 | Msa1433890:intron | 30.0% | |
| CCTTATATATCCATAAGGTT+GGG | - | tig0027435:30859-30878 | Msa1433890:intron | 30.0% | |
| CATAGTACTTCTTAAGAAGA+TGG | - | tig0027435:30949-30968 | Msa1433890:intron | 30.0% | |
| ! | GTTTTTATTGAGTGCATGTT+TGG | - | tig0027435:31180-31199 | Msa1433890:intron | 30.0% |
| ATTTGGTAAAAGCTACACTT+TGG | - | tig0027435:31245-31264 | Msa1433890:intron | 30.0% | |
| ACAGCTACACATGAAAATTA+CGG | + | tig0027435:31294-31313 | None:intergenic | 30.0% | |
| !! | TTTGGTTTGACAGTAAAGTT+TGG | + | tig0027435:31324-31343 | None:intergenic | 30.0% |
| !! | AAATAAGGGTGATGTTTTTG+TGG | - | tig0027435:31358-31377 | Msa1433890:intron | 30.0% |
| !! | AATAAGGGTGATGTTTTTGT+GGG | - | tig0027435:31359-31378 | Msa1433890:intron | 30.0% |
| !!! | TTTTTTTTTGGATGAAGGGT+GGG | + | tig0027435:31559-31578 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTGGATGAAGGG+TGG | + | tig0027435:31560-31579 | None:intergenic | 30.0% |
| !! | TAATTTTAAATGGTTTGCCC+GGG | - | tig0027435:31668-31687 | Msa1433890:five_prime_UTR | 30.0% |
| CTTAAGTACGTGAATGAAAT+TGG | - | tig0027435:31845-31864 | Msa1433890:five_prime_UTR | 30.0% | |
| TCTGCTGTTGAAATAAGATA+TGG | - | tig0027435:31937-31956 | Msa1433890:five_prime_UTR | 30.0% | |
| TATCGTACAATTGCTTAGTA+AGG | + | tig0027435:31965-31984 | None:intergenic | 30.0% | |
| AAAATGTGTTTGTGCAGAAT+AGG | - | tig0027435:31996-32015 | Msa1433890:five_prime_UTR | 30.0% | |
| ! | TGACATCAATTTTCACAAGA+TGG | - | tig0027435:32122-32141 | Msa1433890:five_prime_UTR | 30.0% |
| GAGAGAGAGAGAAATGAAAA+TGG | + | tig0027435:29482-29501 | None:intergenic | 35.0% | |
| ! | TCTGCAAACAAACTGGTTTA+TGG | - | tig0027435:29512-29531 | Msa1433890:CDS | 35.0% |
| GTAGATGTGGTTGAAGTTAA+TGG | + | tig0027435:29559-29578 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAAAGAGA+AGG | + | tig0027435:29633-29652 | None:intergenic | 35.0% | |
| ! | CTAGTGGATGATTATGATCA+TGG | - | tig0027435:30099-30118 | Msa1433890:intron | 35.0% |
| !!! | GCTTGTATTTTAGGATTTGG+AGG | - | tig0027435:30340-30359 | Msa1433890:intron | 35.0% |
| ! | CTTTGTGGATTATGTATGCT+AGG | - | tig0027435:30688-30707 | Msa1433890:intron | 35.0% |
| CCCAACCTTATGGATATATA+AGG | + | tig0027435:30862-30881 | None:intergenic | 35.0% | |
| TTTGTTTAGGGGATACAAGT+AGG | - | tig0027435:31143-31162 | Msa1433890:intron | 35.0% | |
| ! | TAGCTTTTACCAAATCACAG+TGG | + | tig0027435:31240-31259 | None:intergenic | 35.0% |
| !! | ATTTTGATCCGGTGTATGTT+TGG | + | tig0027435:31342-31361 | None:intergenic | 35.0% |
| ACATACACCGGATCAAAATA+AGG | - | tig0027435:31343-31362 | Msa1433890:intron | 35.0% | |
| CATACACCGGATCAAAATAA+GGG | - | tig0027435:31344-31363 | Msa1433890:intron | 35.0% | |
| !!! | ACATCACCCTTATTTTGATC+CGG | + | tig0027435:31353-31372 | None:intergenic | 35.0% |
| !! | ATAAGGGTGATGTTTTTGTG+GGG | - | tig0027435:31360-31379 | Msa1433890:intron | 35.0% |
| !!! | AGTTTTTTTGTGCCCTTTTG+AGG | - | tig0027435:31398-31417 | Msa1433890:intron | 35.0% |
| TTAGTAACTCTGCCTCAAAA+GGG | + | tig0027435:31413-31432 | None:intergenic | 35.0% | |
| ATTAGTAACTCTGCCTCAAA+AGG | + | tig0027435:31414-31433 | None:intergenic | 35.0% | |
| TTGAGGCAGAGTTACTAATT+TGG | - | tig0027435:31415-31434 | Msa1433890:intron | 35.0% | |
| TGAGGCAGAGTTACTAATTT+GGG | - | tig0027435:31416-31435 | Msa1433890:intron | 35.0% | |
| !!! | TGTCTTTGTTGTTTTGTGCT+TGG | - | tig0027435:31446-31465 | Msa1433890:intron | 35.0% |
| !!! | TTTTTTTTGGATGAAGGGTG+GGG | + | tig0027435:31558-31577 | None:intergenic | 35.0% |
| GTTTATGAAATTGGCCATTG+TGG | - | tig0027435:31867-31886 | Msa1433890:five_prime_UTR | 35.0% | |
| TTCACGTATTTAAGCCACAA+TGG | + | tig0027435:31884-31903 | None:intergenic | 35.0% | |
| CAGATGTAACATAGCATGAT+AGG | + | tig0027435:31921-31940 | None:intergenic | 35.0% | |
| AAATTGATGTCAGTTCCAGA+GGG | + | tig0027435:32114-32133 | None:intergenic | 35.0% | |
| AAAATTGATGTCAGTTCCAG+AGG | + | tig0027435:32115-32134 | None:intergenic | 35.0% | |
| GCAAGAAGAAGAAAGAAGGA+AGG | + | tig0027435:29431-29450 | None:intergenic | 40.0% | |
| !! | TGGGTTTGTTATCGTAGATG+TGG | + | tig0027435:29572-29591 | None:intergenic | 40.0% |
| !!! | GTTTTGGTGGTGGTTGTTAT+GGG | + | tig0027435:29591-29610 | None:intergenic | 40.0% |
| !!! | CTTTGAAGCGTTGTTGGTTT+TGG | + | tig0027435:29607-29626 | None:intergenic | 40.0% |
| AGGATTCGACCATGTTTGTT+TGG | + | tig0027435:29693-29712 | None:intergenic | 40.0% | |
| ! | GTTGGATGTGAAATGGGTTT+GGG | + | tig0027435:29735-29754 | None:intergenic | 40.0% |
| AGGAGGATTAGATTGCTTTG+TGG | - | tig0027435:30673-30692 | Msa1433890:intron | 40.0% | |
| ! | TGAGTGCATGTTTGGATTAG+CGG | - | tig0027435:31188-31207 | Msa1433890:intron | 40.0% |
| ! | TTTGGAGCTACCCAAAATCA+TGG | - | tig0027435:31263-31282 | Msa1433890:intron | 40.0% |
| CTGTCAAACCAAACATACAC+CGG | - | tig0027435:31331-31350 | Msa1433890:intron | 40.0% | |
| TTGTGGGGTTCTTGATTAAG+AGG | - | tig0027435:31375-31394 | Msa1433890:intron | 40.0% | |
| TTCACGTACTTAAGCCACAA+TGG | + | tig0027435:31839-31858 | None:intergenic | 40.0% | |
| CGGTTACAAATTGCGATGTT+AGG | + | tig0027435:32198-32217 | None:intergenic | 40.0% | |
| CTCTCTCTCTGCAAACAAAC+TGG | - | tig0027435:29505-29524 | Msa1433890:CDS | 45.0% | |
| !!! | GGTTTTGGTGGTGGTTGTTA+TGG | + | tig0027435:29592-29611 | None:intergenic | 45.0% |
| !!! | TGAAGCGTTGTTGGTTTTGG+TGG | + | tig0027435:29604-29623 | None:intergenic | 45.0% |
| !! | AGGGTTCTTTGAAGCGTTGT+TGG | + | tig0027435:29613-29632 | None:intergenic | 45.0% |
| GGAAACTGCAGAATACGAAG+CGG | + | tig0027435:29667-29686 | None:intergenic | 45.0% | |
| GTTTCCGCACCAAACAAACA+TGG | - | tig0027435:29681-29700 | Msa1433890:intron | 45.0% | |
| ! | TCGACCATGTTTGTTTGGTG+CGG | + | tig0027435:29688-29707 | None:intergenic | 45.0% |
| ! | TGTGAAATGGGTTTGGGTGT+GGG | + | tig0027435:29729-29748 | None:intergenic | 45.0% |
| ! | ATGTGAAATGGGTTTGGGTG+TGG | + | tig0027435:29730-29749 | None:intergenic | 45.0% |
| ! | GGTTGGATGTGAAATGGGTT+TGG | + | tig0027435:29736-29755 | None:intergenic | 45.0% |
| ! | TGTTGTTGTTGGATCGGGTT+GGG | + | tig0027435:29783-29802 | None:intergenic | 45.0% |
| AAACTGGAGGCTGTTGTTGT+TGG | + | tig0027435:29794-29813 | None:intergenic | 45.0% | |
| !! | AAAGAACCGATTCGACCCAA+CGG | + | tig0027435:29867-29886 | None:intergenic | 45.0% |
| ! | TCGAATCGGTTCTTTGTCGT+CGG | - | tig0027435:29872-29891 | Msa1433890:intron | 45.0% |
| !!! | TTACCGAACCCGGTTTTGAA+CGG | - | tig0027435:29900-29919 | Msa1433890:intron | 45.0% |
| TCTTTCTCGCCGTTCAAAAC+CGG | + | tig0027435:29912-29931 | None:intergenic | 45.0% | |
| CGAGAAAGAGAAGAGTTTGC+CGG | - | tig0027435:29923-29942 | Msa1433890:intron | 45.0% | |
| AAGAGTTTGCCGGTGAAAAG+TGG | - | tig0027435:29933-29952 | Msa1433890:intron | 45.0% | |
| AGAGGATGAGGAAGGTTTCT+GGG | - | tig0027435:30045-30064 | Msa1433890:intron | 45.0% | |
| ! | GAAGGTTTCTGGGTCTGATA+CGG | - | tig0027435:30055-30074 | Msa1433890:intron | 45.0% |
| ! | AAGGTTTCTGGGTCTGATAC+GGG | - | tig0027435:30056-30075 | Msa1433890:intron | 45.0% |
| !! | GAGTTGCAAGGGAGTATCTT+AGG | - | tig0027435:30644-30663 | Msa1433890:intron | 45.0% |
| !! | CAAGGGAGTATCTTAGGACT+TGG | - | tig0027435:30650-30669 | Msa1433890:intron | 45.0% |
| AGTATCTTAGGACTTGGAGG+AGG | - | tig0027435:30656-30675 | Msa1433890:intron | 45.0% | |
| CAACCAGATGCACAAAGCTT+TGG | - | tig0027435:31813-31832 | Msa1433890:five_prime_UTR | 45.0% | |
| GTACATATCCTTTGTCCCTC+TGG | - | tig0027435:32096-32115 | Msa1433890:five_prime_UTR | 45.0% | |
| ! | GGTGTTGAGAATCTGTCTTC+TGG | + | tig0027435:32177-32196 | None:intergenic | 45.0% |
| !!! | CTTTATTTAATAATTTTAAA+TGG | - | tig0027435:31658-31677 | Msa1433890:five_prime_UTR | 5.0% |
| !!! | AGCGTTGTTGGTTTTGGTGG+TGG | + | tig0027435:29601-29620 | None:intergenic | 50.0% |
| AGAATACGAAGCGGAGGAGA+AGG | + | tig0027435:29658-29677 | None:intergenic | 50.0% | |
| AACTGCAGAATACGAAGCGG+AGG | + | tig0027435:29664-29683 | None:intergenic | 50.0% | |
| ! | AAATGGGTTTGGGTGTGGGT+CGG | + | tig0027435:29725-29744 | None:intergenic | 50.0% |
| GGTGGGGTTGGATGTGAAAT+GGG | + | tig0027435:29741-29760 | None:intergenic | 50.0% | |
| !! | TGTTGGATCGGGTTGGGTTT+GGG | + | tig0027435:29777-29796 | None:intergenic | 50.0% |
| !! | TTGTTGGATCGGGTTGGGTT+TGG | + | tig0027435:29778-29797 | None:intergenic | 50.0% |
| ! | CTGTTGTTGTTGGATCGGGT+TGG | + | tig0027435:29784-29803 | None:intergenic | 50.0% |
| ! | GAGGCTGTTGTTGTTGGATC+GGG | + | tig0027435:29788-29807 | None:intergenic | 50.0% |
| ! | GGAGGCTGTTGTTGTTGGAT+CGG | + | tig0027435:29789-29808 | None:intergenic | 50.0% |
| GGTCGATCTGAAGAAACTGG+AGG | + | tig0027435:29807-29826 | None:intergenic | 50.0% | |
| CAGTTTCTTCAGATCGACCC+CGG | - | tig0027435:29808-29827 | Msa1433890:intron | 50.0% | |
| AGCGAGATTGAATCTGGTCC+CGG | + | tig0027435:29840-29859 | None:intergenic | 50.0% | |
| GGACGAAGCGAGATTGAATC+TGG | + | tig0027435:29846-29865 | None:intergenic | 50.0% | |
| TTCAATCTCGCTTCGTCCGT+TGG | - | tig0027435:29848-29867 | Msa1433890:intron | 50.0% | |
| TCAATCTCGCTTCGTCCGTT+GGG | - | tig0027435:29849-29868 | Msa1433890:intron | 50.0% | |
| ! | CGAATCGGTTCTTTGTCGTC+GGG | - | tig0027435:29873-29892 | Msa1433890:intron | 50.0% |
| CTTTCTCGCCGTTCAAAACC+GGG | + | tig0027435:29911-29930 | None:intergenic | 50.0% | |
| GAAAACTTGCGACCCAAGTC+TGG | - | tig0027435:30014-30033 | Msa1433890:intron | 50.0% | |
| CTCTCATTCCCACCAGACTT+GGG | + | tig0027435:30029-30048 | None:intergenic | 50.0% | |
| TGGGAATGAGAGGATGAGGA+AGG | - | tig0027435:30037-30056 | Msa1433890:intron | 50.0% | |
| GAGAGGATGAGGAAGGTTTC+TGG | - | tig0027435:30044-30063 | Msa1433890:intron | 50.0% | |
| ! | TCTGGGTCTGATACGGGTTT+TGG | - | tig0027435:30062-30081 | Msa1433890:intron | 50.0% |
| ! | CTGGGTCTGATACGGGTTTT+GGG | - | tig0027435:30063-30082 | Msa1433890:intron | 50.0% |
| GGGAATCGACCCAATTCTAG+TGG | - | tig0027435:30083-30102 | Msa1433890:intron | 50.0% | |
| !! | GGGAGTATCTTAGGACTTGG+AGG | - | tig0027435:30653-30672 | Msa1433890:intron | 50.0% |
| !! | GCATGTTTGGATTAGCGGTG+AGG | - | tig0027435:31193-31212 | Msa1433890:intron | 50.0% |
| CTTGGTGAGCCACTGTGATT+TGG | - | tig0027435:31228-31247 | Msa1433890:intron | 50.0% | |
| ! | TACGGCGACGCCATGATTTT+GGG | + | tig0027435:31276-31295 | None:intergenic | 50.0% |
| ! | TTACGGCGACGCCATGATTT+TGG | + | tig0027435:31277-31296 | None:intergenic | 50.0% |
| ATGAAGGGTGGGGTGAAATG+AGG | + | tig0027435:31548-31567 | None:intergenic | 50.0% | |
| GACTCAAACCCGGAACTAGT+CGG | - | tig0027435:31690-31709 | Msa1433890:five_prime_UTR | 50.0% | |
| ! | TACTCCATCCGACTAGTTCC+GGG | + | tig0027435:31701-31720 | None:intergenic | 50.0% |
| ! | CTACTCCATCCGACTAGTTC+CGG | + | tig0027435:31702-31721 | None:intergenic | 50.0% |
| ! | TGGCCAAAGCTTTGTGCATC+TGG | + | tig0027435:31819-31838 | None:intergenic | 50.0% |
| ! | GCACAAAGCTTTGGCCATTG+TGG | - | tig0027435:31822-31841 | Msa1433890:five_prime_UTR | 50.0% |
| TGTCAGTTCCAGAGGGACAA+AGG | + | tig0027435:32107-32126 | None:intergenic | 50.0% | |
| GTGTGGGTCGGGTTAAAACG+AGG | + | tig0027435:29713-29732 | None:intergenic | 55.0% | |
| ! | AATGGGTTTGGGTGTGGGTC+GGG | + | tig0027435:29724-29743 | None:intergenic | 55.0% |
| GGGTGGGGTTGGATGTGAAA+TGG | + | tig0027435:29742-29761 | None:intergenic | 55.0% | |
| GGTTTGGGCTGTGATTGTGC+GGG | + | tig0027435:29762-29781 | None:intergenic | 55.0% | |
| GGGTTTGGGCTGTGATTGTG+CGG | + | tig0027435:29763-29782 | None:intergenic | 55.0% | |
| CGGGGTCGATCTGAAGAAAC+TGG | + | tig0027435:29810-29829 | None:intergenic | 55.0% | |
| AATCTGGTCCCGGTTCAGAC+CGG | + | tig0027435:29830-29849 | None:intergenic | 55.0% | |
| CTTCGTCCGTTGGGTCGAAT+CGG | - | tig0027435:29858-29877 | Msa1433890:intron | 55.0% | |
| ! | GTCGGGTCTTTTACCGAACC+CGG | - | tig0027435:29890-29909 | Msa1433890:intron | 55.0% |
| TCGCCGTTCAAAACCGGGTT+CGG | + | tig0027435:29906-29925 | None:intergenic | 55.0% | |
| ACAAACCCCGGACGAAGATG+CGG | + | tig0027435:29972-29991 | None:intergenic | 55.0% | |
| TCCCTAAGACACTCCTCCCT+CGG | + | tig0027435:29996-30015 | None:intergenic | 55.0% | |
| AACTTGCGACCCAAGTCTGG+TGG | - | tig0027435:30017-30036 | Msa1433890:intron | 55.0% | |
| ACTTGCGACCCAAGTCTGGT+GGG | - | tig0027435:30018-30037 | Msa1433890:intron | 55.0% | |
| CCTCTCATTCCCACCAGACT+TGG | + | tig0027435:30030-30049 | None:intergenic | 55.0% | |
| CCAAGTCTGGTGGGAATGAG+AGG | - | tig0027435:30027-30046 | Msa1433890:intron | 55.0% | |
| CTGGTGGGAATGAGAGGATG+AGG | - | tig0027435:30033-30052 | Msa1433890:intron | 55.0% | |
| GTGAGGTTGCCATGCTAGCT+TGG | - | tig0027435:31210-31229 | Msa1433890:intron | 55.0% | |
| AGTGGCTCACCAAGCTAGCA+TGG | + | tig0027435:31222-31241 | None:intergenic | 55.0% | |
| TAGTTCCGGGTTTGAGTCCC+GGG | + | tig0027435:31688-31707 | None:intergenic | 55.0% | |
| CTAGTTCCGGGTTTGAGTCC+CGG | + | tig0027435:31689-31708 | None:intergenic | 55.0% | |
| CAAACCCGGAACTAGTCGGA+TGG | - | tig0027435:31694-31713 | Msa1433890:five_prime_UTR | 55.0% | |
| TGTGATTGTGCGGGTGGGGT+TGG | + | tig0027435:29753-29772 | None:intergenic | 60.0% | |
| TGGGCTGTGATTGTGCGGGT+GGG | + | tig0027435:29758-29777 | None:intergenic | 60.0% | |
| TTGGGCTGTGATTGTGCGGG+TGG | + | tig0027435:29759-29778 | None:intergenic | 60.0% | |
| AGATCGACCCCGGTCTGAAC+CGG | - | tig0027435:29818-29837 | Msa1433890:intron | 60.0% | |
| ATCTGGTCCCGGTTCAGACC+GGG | + | tig0027435:29829-29848 | None:intergenic | 60.0% | |
| !! | TGCCGAGGGAGGAGTGTCTT+AGG | - | tig0027435:29991-30010 | Msa1433890:intron | 60.0% |
| !! | GCCGAGGGAGGAGTGTCTTA+GGG | - | tig0027435:29992-30011 | Msa1433890:intron | 60.0% |
| GTTTGCCCGGGACTCAAACC+CGG | - | tig0027435:31680-31699 | Msa1433890:five_prime_UTR | 60.0% | |
| GGGCTGTGATTGTGCGGGTG+GGG | + | tig0027435:29757-29776 | None:intergenic | 65.0% | |
| GATCGACCCCGGTCTGAACC+GGG | - | tig0027435:29819-29838 | Msa1433890:intron | 65.0% | |
| TCTGGTCCCGGTTCAGACCG+GGG | + | tig0027435:29828-29847 | None:intergenic | 65.0% | |
| TGTGCCGCCGCATCTTCGTC+CGG | - | tig0027435:29962-29981 | Msa1433890:intron | 65.0% | |
| AACCCCGGACGAAGATGCGG+CGG | + | tig0027435:29969-29988 | None:intergenic | 65.0% | |
| TTCGTCCGGGGTTTGTGCCG+AGG | - | tig0027435:29976-29995 | Msa1433890:intron | 65.0% | |
| TCGTCCGGGGTTTGTGCCGA+GGG | - | tig0027435:29977-29996 | Msa1433890:intron | 65.0% | |
| TCCTCCCTCGGCACAAACCC+CGG | + | tig0027435:29984-30003 | None:intergenic | 65.0% | |
| GTGCCGCCGCATCTTCGTCC+GGG | - | tig0027435:29963-29982 | Msa1433890:intron | 70.0% | |
| TGCCGCCGCATCTTCGTCCG+GGG | - | tig0027435:29964-29983 | Msa1433890:intron | 70.0% | |
| TCCGGGGTTTGTGCCGAGGG+AGG | - | tig0027435:29980-29999 | Msa1433890:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027435 | gene | 29416 | 32264 | 29416 | ID=Msa1433890;Name=Msa1433890 |
| tig0027435 | mRNA | 29416 | 32264 | 29416 | ID=Msa1433890-mRNA-1;Parent=Msa1433890;Name=Msa1433890-mRNA-1;_AED=0.11;_eAED=0.15;_QI=690|0|0.5|1|0|0|2|0|64 |
| tig0027435 | exon | 29416 | 29595 | 29416 | ID=Msa1433890-mRNA-1:exon:8905;Parent=Msa1433890-mRNA-1 |
| tig0027435 | exon | 31560 | 32264 | 31560 | ID=Msa1433890-mRNA-1:exon:8904;Parent=Msa1433890-mRNA-1 |
| tig0027435 | five_prime_UTR | 31575 | 32264 | 31575 | ID=Msa1433890-mRNA-1:five_prime_utr;Parent=Msa1433890-mRNA-1 |
| tig0027435 | CDS | 31560 | 31574 | 31560 | ID=Msa1433890-mRNA-1:cds;Parent=Msa1433890-mRNA-1 |
| tig0027435 | CDS | 29416 | 29595 | 29416 | ID=Msa1433890-mRNA-1:cds;Parent=Msa1433890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
