AlfalfaGEDB | Msa0469790

M. sativa cultivar zhongmu-4 / Msa0469790

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0469790	XP_003602028.1	99.095	221	1	1	1	221	1	220	2.54e-158	447

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0469790	G7J4F6	99.095	221	1	1	1	221	1	220	1.22e-158	447

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0469790	-0.818916	1.526685e-52	-8.615850e-47
Msa0029540	Msa0469790	-0.812368	4.391425e-51	-8.615850e-47
Msa0094010	Msa0469790	0.803593	3.237473e-49	-8.615850e-47
Msa0099510	Msa0469790	0.812866	3.417966e-51	-8.615850e-47
Msa0125370	Msa0469790	-0.811655	6.280134e-51	-8.615850e-47
Msa0138970	Msa0469790	-0.839499	1.527415e-57	-8.615850e-47
Msa0140520	Msa0469790	-0.803122	4.051849e-49	-8.615850e-47
Msa0145950	Msa0469790	0.815983	6.989848e-52	-8.615850e-47
Msa0148120	Msa0469790	0.810190	1.303826e-50	-8.615850e-47
Msa0152840	Msa0469790	0.811374	7.229964e-51	-8.615850e-47
Msa0156650	Msa0469790	-0.810587	1.070301e-50	-8.615850e-47
Msa0168640	Msa0469790	-0.844672	6.538493e-59	-8.615850e-47
Msa0172350	Msa0469790	0.832753	7.897653e-56	-8.615850e-47
Msa0178030	Msa0469790	-0.801889	7.274956e-49	-8.615850e-47
Msa0196020	Msa0469790	-0.816936	4.275774e-52	-8.615850e-47
Msa0208810	Msa0469790	0.821960	3.057963e-53	-8.615850e-47
Msa0212750	Msa0469790	-0.802173	6.359795e-49	-8.615850e-47
Msa0219250	Msa0469790	-0.834412	3.043425e-56	-8.615850e-47
Msa0222920	Msa0469790	0.806607	7.577648e-50	-8.615850e-47
Msa0374250	Msa0469790	0.950881	6.573901e-109	-8.615850e-47
Msa0377530	Msa0469790	0.808594	2.868691e-50	-8.615850e-47
Msa0392940	Msa0469790	0.801207	1.003808e-48	-8.615850e-47
Msa0414950	Msa0469790	-0.800113	1.677927e-48	-8.615850e-47
Msa0426810	Msa0469790	0.809028	2.316149e-50	-8.615850e-47
Msa0434720	Msa0469790	-0.815037	1.135030e-51	-8.615850e-47
Msa0436280	Msa0469790	-0.825570	4.362609e-54	-8.615850e-47
Msa0437510	Msa0469790	0.843459	1.383055e-58	-8.615850e-47
Msa0441800	Msa0469790	0.803307	3.710262e-49	-8.615850e-47
Msa0469790	Msa0469820	0.959588	1.315761e-117	-8.615850e-47
Msa0469790	Msa0469910	-0.846385	2.245201e-59	-8.615850e-47
Msa0469790	Msa0515380	0.855029	8.297225e-62	-8.615850e-47
Msa0469790	Msa0517490	0.806349	8.590302e-50	-8.615850e-47
Msa0469790	Msa0517840	0.805114	1.560335e-49	-8.615850e-47
Msa0469790	Msa0525340	0.808729	2.684673e-50	-8.615850e-47
Msa0469790	Msa0526710	0.825708	4.046223e-54	-8.615850e-47
Msa0469790	Msa0542160	0.826072	3.315720e-54	-8.615850e-47
Msa0469790	Msa0575990	-0.822648	2.116688e-53	-8.615850e-47
Msa0469790	Msa0576100	-0.828153	1.053169e-54	-8.615850e-47
Msa0469790	Msa0578090	0.818839	1.589899e-52	-8.615850e-47
Msa0469790	Msa0579290	0.820236	7.631779e-53	-8.615850e-47
Msa0469790	Msa0579390	0.813082	3.065078e-51	-8.615850e-47
Msa0469790	Msa0586850	0.832577	8.732457e-56	-8.615850e-47
Msa0469790	Msa0591770	0.810660	1.032236e-50	-8.615850e-47
Msa0469790	Msa0609970	0.814747	1.316391e-51	-8.615850e-47
Msa0469790	Msa0614990	0.810060	1.390898e-50	-8.615850e-47
Msa0469790	Msa0615660	0.814838	1.256458e-51	-8.615850e-47
Msa0469790	Msa0626680	0.816743	4.723984e-52	-8.615850e-47
Msa0469790	Msa0633760	0.824124	9.566447e-54	-8.615850e-47
Msa0469790	Msa0650620	0.829137	6.091736e-55	-8.615850e-47
Msa0469790	Msa0659140	0.806926	6.489213e-50	-8.615850e-47
Msa0469790	Msa0664760	0.845342	4.310526e-59	-8.615850e-47
Msa0469790	Msa0669850	0.827614	1.419538e-54	-8.615850e-47
Msa0469790	Msa0677770	0.801958	7.042945e-49	-8.615850e-47
Msa0469790	Msa0711490	0.803700	3.076044e-49	-8.615850e-47
Msa0469790	Msa0743680	0.814042	1.884054e-51	-8.615850e-47
Msa0469790	Msa0754720	-0.803057	4.180221e-49	-8.615850e-47
Msa0469790	Msa0784620	0.818478	1.920069e-52	-8.615850e-47
Msa0469790	Msa0791820	0.806989	6.291436e-50	-8.615850e-47
Msa0469790	Msa0814250	0.813551	2.417220e-51	-8.615850e-47
Msa0469790	Msa0874500	0.824656	7.172784e-54	-8.615850e-47
Msa0469790	Msa0895310	0.803771	2.974063e-49	-8.615850e-47
Msa0469790	Msa0947530	-0.851247	1.004984e-60	-8.615850e-47
Msa0469790	Msa1054240	0.819521	1.112041e-52	-8.615850e-47
Msa0469790	Msa1069660	-0.839161	1.869509e-57	-8.615850e-47
Msa0469790	Msa1098720	-0.831932	1.260920e-55	-8.615850e-47
Msa0469790	Msa1126120	-0.829765	4.285834e-55	-8.615850e-47
Msa0469790	Msa1166010	0.807671	4.510019e-50	-8.615850e-47
Msa0469790	Msa1193950	-0.812762	3.600375e-51	-8.615850e-47
Msa0469790	Msa1236070	-0.808096	3.662484e-50	-8.615850e-47
Msa0469790	Msa1246530	-0.819227	1.297535e-52	-8.615850e-47
Msa0469790	Msa1249920	0.818186	2.235188e-52	-8.615850e-47
Msa0469790	Msa1269580	-0.831800	1.359352e-55	-8.615850e-47
Msa0469790	Msa1291350	0.810828	9.492824e-51	-8.615850e-47
Msa0469790	Msa1294960	0.813363	2.659039e-51	-8.615850e-47
Msa0469790	Msa1310660	0.815606	8.483526e-52	-8.615850e-47
Msa0469790	Msa1360890	-0.843202	1.620069e-58	-8.615850e-47
Msa0469790	Msa1373510	0.811090	8.328258e-51	-8.615850e-47
Msa0469790	Msa1390310	0.828775	7.454869e-55	-8.615850e-47
Msa0469790	Msa1398860	0.807749	4.342320e-50	-8.615850e-47
Msa0469790	Msa1403930	-0.805068	1.595279e-49	-8.615850e-47
Msa0469790	Msa1411400	-0.809360	1.966861e-50	-8.615850e-47
Msa0469790	Msa1429360	-0.819498	1.125279e-52	-8.615850e-47
Msa0469790	Msa1442220	-0.851532	8.346487e-61	-8.615850e-47
Msa0469790	Msa1447110	0.808230	3.429963e-50	-8.615850e-47
Msa0469790	Msa1449910	0.845322	4.365085e-59	-8.615850e-47
Msa0242680	Msa0469790	0.824034	1.004506e-53	-8.615850e-47
Msa0258880	Msa0469790	-0.828149	1.055748e-54	-8.615850e-47
Msa0267760	Msa0469790	0.826904	2.099755e-54	-8.615850e-47
Msa0275030	Msa0469790	0.811586	6.502760e-51	-8.615850e-47
Msa0275400	Msa0469790	-0.846337	2.313679e-59	-8.615850e-47
Msa0295000	Msa0469790	-0.801952	7.061426e-49	-8.615850e-47
Msa0300300	Msa0469790	-0.809015	2.331299e-50	-8.615850e-47
Msa0308220	Msa0469790	0.803861	2.847840e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0469790	MtrunA17_Chr3g0124651	99.095	221	1	1	1	221	1	220	2.34e-162	447

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0469790	AT1G21830.1	41.228	228	94	10	4	218	2	202	1.34e-35	125
Msa0469790	AT1G44608.1	35.263	190	87	7	13	199	12	168	1.49e-18	80.1

Find 91 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTATTATTTGTTTGTGTCTT+TGG	0.113742	3_3:-71767377	Msa0469790:three_prime_UTR
TTTGCATGCTTTGAGTATTT+TGG	0.155308	3_3:-71767154	Msa0469790:three_prime_UTR
GAAAGTGACACCAATTAATT+TGG	0.199806	3_3:-71767432	Msa0469790:three_prime_UTR
AATTCCATAACCAAATTAAT+TGG	0.200699	3_3:+71767422	None:intergenic
ACCTAACATGGGGAGTATTT+TGG	0.214727	3_3:+71766958	None:intergenic
AAGACAGTACAGGCTGTAAA+AGG	0.240073	3_3:-71767067	Msa0469790:three_prime_UTR
CTATTCATGTTTGTTAATAA+AGG	0.249204	3_3:+71769463	None:intergenic
ATCCTTCACACTTCACAGTA+TGG	0.272053	3_3:+71766991	None:intergenic
GTGATGTGAACTAATTTAAA+TGG	0.285211	3_3:+71769575	None:intergenic
ACGCCAACAACTACTTGTTT+AGG	0.289509	3_3:+71769400	None:intergenic
ATTCATAAGATCTTTGCTTT+TGG	0.295772	3_3:-71769211	Msa0469790:CDS
CGCCAACAACTACTTGTTTA+GGG	0.296896	3_3:+71769401	None:intergenic
AAGAAAGTGAATTGTGAAAA+AGG	0.296918	3_3:+71769510	None:intergenic
GACACCAATTAATTTGGTTA+TGG	0.306860	3_3:-71767426	Msa0469790:three_prime_UTR
TCAATCAAGTTTGAAGGAAA+TGG	0.311026	3_3:-71767758	Msa0469790:CDS
GAATGAAAGGCTTCTTCTAT+TGG	0.318441	3_3:-71769362	Msa0469790:CDS
CTTTATTAACAAACATGAAT+AGG	0.318817	3_3:-71769462	Msa0469790:exon
CAAAGTCACGTGACACATTC+AGG	0.325911	3_3:-71767628	Msa0469790:CDS
AGCCTTTCATTCAAGCATAA+AGG	0.335003	3_3:+71769373	None:intergenic
TTATGAATAGAAGAAGAATT+TGG	0.340183	3_3:+71769226	None:intergenic
ACATGAATAGGAATGGATAT+AGG	0.360762	3_3:-71769450	Msa0469790:CDS
CAATCAAGTTTGAAGGAAAT+GGG	0.363983	3_3:-71767757	Msa0469790:CDS
GAAACTAAAATAGAAGAGTA+TGG	0.367581	3_3:+71769645	None:intergenic
GCCTTTCATTCAAGCATAAA+GGG	0.367664	3_3:+71769374	None:intergenic
CTCATAAGGTGGAAGAAAAC+TGG	0.371691	3_3:-71767575	Msa0469790:CDS
CATGAATAGGAATGGATATA+GGG	0.372518	3_3:-71769449	Msa0469790:CDS
GTCCTGTAGCATTATACAAT+AGG	0.378100	3_3:+71766902	None:intergenic
GGTTCTTCTTGCAATTCTCT+AGG	0.383703	3_3:+71767690	None:intergenic
TGGTCTCTAATTTGTCCTCA+TGG	0.391766	3_3:+71767669	None:intergenic
ATTATTGAGTATATATATGT+TGG	0.391855	3_3:+71769614	None:intergenic
CTTCATTGTTTCCCACTACA+TGG	0.398038	3_3:+71766935	None:intergenic
CACCCTAAACAAGTAGTTGT+TGG	0.402840	3_3:-71769403	Msa0469790:CDS
TTCATATCAATCAAGTTTGA+AGG	0.415927	3_3:-71767764	Msa0469790:CDS
GCCCTTTATGCTTGAATGAA+AGG	0.420777	3_3:-71769375	Msa0469790:CDS
GCCAAAATACTCCCCATGTT+AGG	0.451646	3_3:-71766959	Msa0469790:three_prime_UTR
GTCACATGTTCCAGCTCATA+AGG	0.455731	3_3:-71767589	Msa0469790:CDS
GTGGGAAACAATGAAGCAAA+AGG	0.456814	3_3:-71766928	Msa0469790:three_prime_UTR
TGCATGCTCTATCACACTCT+TGG	0.456919	3_3:+71767649	None:intergenic
CTACTATTCATATTGACATA+TGG	0.459031	3_3:-71767307	Msa0469790:three_prime_UTR
TCCTGTAGCATTATACAATA+GGG	0.460383	3_3:+71766903	None:intergenic
GTTCTTCTTGCAATTCTCTA+GGG	0.470567	3_3:+71767691	None:intergenic
CCCACTACATGGACCTAACA+TGG	0.475730	3_3:+71766946	None:intergenic
TTGTCTTATAGTTGTCTTAG+TGG	0.478336	3_3:-71766879	Msa0469790:three_prime_UTR
TTATTGAGTATATATATGTT+GGG	0.485571	3_3:+71769615	None:intergenic
CACGTAGGCAACAAGGTTGA+AGG	0.495184	3_3:-71767542	Msa0469790:CDS
TCCCTATTGTATAATGCTAC+AGG	0.496181	3_3:-71766904	Msa0469790:three_prime_UTR
TGAATAGAAGAAGAATTTGG+TGG	0.500634	3_3:+71769229	None:intergenic
GTCTACTATACTTTATTCCA+TGG	0.505676	3_3:+71767460	None:intergenic
TTAACAAACATGAATAGGAA+TGG	0.508320	3_3:-71769457	Msa0469790:exon
CTTCTATTGGCTGCAAAACA+AGG	0.509299	3_3:-71769349	Msa0469790:CDS
TGTCTTATAGTTGTCTTAGT+GGG	0.521254	3_3:-71766878	Msa0469790:three_prime_UTR
TCCTTCACACTTCACAGTAT+GGG	0.522668	3_3:+71766992	None:intergenic
AACTAATTTAAATGGATGGA+TGG	0.530223	3_3:+71769583	None:intergenic
ATTTGGTGGCTTTGTGTGTA+CGG	0.533418	3_3:+71769243	None:intergenic
CTTCTTGCAATTCTCTAGGG+AGG	0.538057	3_3:+71767694	None:intergenic
AATTTAAATGGATGGATGGA+AGG	0.543920	3_3:+71769587	None:intergenic
AAACTAAAATAGAAGAGTAT+GGG	0.548003	3_3:+71769646	None:intergenic
ACACATTCAGGTGGAGAAAG+AGG	0.548112	3_3:-71767616	Msa0469790:CDS
TGTGAACTAATTTAAATGGA+TGG	0.550623	3_3:+71769579	None:intergenic
AGACAGTACAGGCTGTAAAA+GGG	0.553990	3_3:-71767066	Msa0469790:three_prime_UTR
CAGTGAAAGTCAGAAAAGGC+TGG	0.555530	3_3:-71767514	Msa0469790:CDS
GGAGCAGTGAAAGTCAGAAA+AGG	0.558648	3_3:-71767518	Msa0469790:CDS
CTTGCAATTCTCTAGGGAGG+AGG	0.560179	3_3:+71767697	None:intergenic
CCCATGTTAGGTCCATGTAG+TGG	0.563434	3_3:-71766947	Msa0469790:three_prime_UTR
TCTCGTCACTGCAAATCTCA+TGG	0.576256	3_3:-71769166	Msa0469790:CDS
CTTCAACCTTGTTGCCTACG+TGG	0.576338	3_3:+71767543	None:intergenic
AAGTCAGAAAAGGCTGGATG+AGG	0.577043	3_3:-71767508	Msa0469790:CDS
TTCAGGTGGAGAAAGAGGAT+TGG	0.577306	3_3:-71767611	Msa0469790:CDS
CCATGTTAGGTCCATGTAGT+GGG	0.578380	3_3:-71766946	Msa0469790:three_prime_UTR
GATATCTCTCCTAGTCCAGA+AGG	0.583190	3_3:-71769127	Msa0469790:intron
TGGGAAACAATGAAGCAAAA+GGG	0.584762	3_3:-71766927	Msa0469790:three_prime_UTR
GGAAAAGAGCACGGTCTCAA+AGG	0.587379	3_3:-71767723	Msa0469790:CDS
TAAATAGCAAAGTGATGATG+AGG	0.597282	3_3:+71767353	None:intergenic
AGGAAATGGGGTAGCCTCGT+GGG	0.614477	3_3:-71767744	Msa0469790:CDS
TATTGGCTGCAAAACAAGGT+CGG	0.618913	3_3:-71769345	Msa0469790:CDS
CCACTACATGGACCTAACAT+GGG	0.623852	3_3:+71766947	None:intergenic
TGTATGCCACGTAGGCAACA+AGG	0.624880	3_3:-71767549	Msa0469790:CDS
AAGGAAATGGGGTAGCCTCG+TGG	0.628547	3_3:-71767745	Msa0469790:CDS
ACATGTTCCAGCTCATAAGG+TGG	0.637291	3_3:-71767586	Msa0469790:CDS
TCCCATACTGTGAAGTGTGA+AGG	0.637445	3_3:-71766993	Msa0469790:three_prime_UTR
AATCAAGTTTGAAGGAAATG+GGG	0.642471	3_3:-71767756	Msa0469790:CDS
AGCCTCGTGGGAAAAGAGCA+CGG	0.642699	3_3:-71767732	Msa0469790:CDS
AAAGAGAAAGAAGAAGACCA+TGG	0.647060	3_3:-71767477	Msa0469790:CDS
CAACAACTACTTGTTTAGGG+TGG	0.653474	3_3:+71769404	None:intergenic
CACTACATGGACCTAACATG+GGG	0.665065	3_3:+71766948	None:intergenic
GTAGGCAACAAGGTTGAAGG+AGG	0.670514	3_3:-71767539	Msa0469790:CDS
ACTGGAGGTGTATGCCACGT+AGG	0.690562	3_3:-71767557	Msa0469790:CDS
TTAGGGTGGAAATTGCAACA+TGG	0.705580	3_3:+71769418	None:intergenic
ATAAGGTGGAAGAAAACTGG+AGG	0.709203	3_3:-71767572	Msa0469790:CDS
AGTCACGTGACACATTCAGG+TGG	0.713866	3_3:-71767625	Msa0469790:CDS
GAATTGCAAGAAGAACCATG+AGG	0.821093	3_3:-71767684	Msa0469790:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAATTATATTTCAAGATTA+TGG	-	chr3_3:71768068-71768087	Msa0469790:intron	10.0%
!!	TTATACTTTATACAATATTA+GGG	+	chr3_3:71768508-71768527	None:intergenic	10.0%
!!	TGTTAGTAATTAAATTAATT+TGG	+	chr3_3:71768553-71768572	None:intergenic	10.0%
!!	TTATTGAGTATATATATGTT+GGG	+	chr3_3:71766912-71766931	None:intergenic	15.0%
!!	ATTATTGAGTATATATATGT+TGG	+	chr3_3:71766913-71766932	None:intergenic	15.0%
!!!	ATTTGGAAAAAAAATCTTTT+GGG	+	chr3_3:71767693-71767712	None:intergenic	15.0%
!!!	AATTTGGAAAAAAAATCTTT+TGG	+	chr3_3:71767694-71767713	None:intergenic	15.0%
!!!	CAACTTCTTTTTAATTAATT+TGG	+	chr3_3:71767710-71767729	None:intergenic	15.0%
!!	CAAATTAATTAAAAAGAAGT+TGG	-	chr3_3:71767708-71767727	Msa0469790:CDS	15.0%
!!	CAATAATGAAAAGAAATTAA+TGG	+	chr3_3:71767829-71767848	None:intergenic	15.0%
!!!	CATTAATTTCTTTTCATTAT+TGG	-	chr3_3:71767827-71767846	Msa0469790:intron	15.0%
!!	ATAATAATAATGCTCTTAAT+TGG	+	chr3_3:71768040-71768059	None:intergenic	15.0%
!!	GTTATACTTTATACAATATT+AGG	+	chr3_3:71768509-71768528	None:intergenic	15.0%
!!!	TTTTTGTAATTTTCCTTTTT+AGG	-	chr3_3:71769405-71769424	Msa0469790:CDS	15.0%
!!!	TTTTGTAATTTTCCTTTTTA+GGG	-	chr3_3:71769406-71769425	Msa0469790:CDS	15.0%
!!!	AAACTAAAATAGAAGAGTAT+GGG	+	chr3_3:71766881-71766900	None:intergenic	20.0%
!!!	GTTTGTTAATAAAGGTTTTT+TGG	+	chr3_3:71767056-71767075	None:intergenic	20.0%
!!!	CTATTCATGTTTGTTAATAA+AGG	+	chr3_3:71767064-71767083	None:intergenic	20.0%
!!	CTTTATTAACAAACATGAAT+AGG	-	chr3_3:71767062-71767081	Msa0469790:three_prime_UTR	20.0%
!!	TTATGAATAGAAGAAGAATT+TGG	+	chr3_3:71767301-71767320	None:intergenic	20.0%
!!!	ATATTAATGATTTTACCTTC+TGG	+	chr3_3:71767415-71767434	None:intergenic	20.0%
!!	ATTAATTAAAAAGAAGTTGG+TGG	-	chr3_3:71767711-71767730	Msa0469790:CDS	20.0%
!!!	ATTAGTTGTTGATATTTTCA+TGG	-	chr3_3:71767779-71767798	Msa0469790:intron	20.0%
!!!	TAATTTCTTTTCATTATTGG+AGG	-	chr3_3:71767830-71767849	Msa0469790:intron	20.0%
!!!	CATTGAACTATTTTTAATAG+TGG	+	chr3_3:71768175-71768194	None:intergenic	20.0%
!!	AATTCCATAACCAAATTAAT+TGG	+	chr3_3:71769105-71769124	None:intergenic	20.0%
!!!	CTTTTTCTTTTTCCATTTTT+TGG	+	chr3_3:71769330-71769349	None:intergenic	20.0%
!!	AATGGAAAAAGAAAAAGAAA+AGG	-	chr3_3:71769333-71769352	Msa0469790:CDS	20.0%
!!	ATGGAAAAAGAAAAAGAAAA+GGG	-	chr3_3:71769334-71769353	Msa0469790:CDS	20.0%
!!	TGAAAATAAAAACCCTAAAA+AGG	+	chr3_3:71769421-71769440	None:intergenic	20.0%
!	GAAACTAAAATAGAAGAGTA+TGG	+	chr3_3:71766882-71766901	None:intergenic	25.0%
!	AACTAATTTAAATGGATGGA+TGG	+	chr3_3:71766944-71766963	None:intergenic	25.0%
!	TGTGAACTAATTTAAATGGA+TGG	+	chr3_3:71766948-71766967	None:intergenic	25.0%
!	GTGATGTGAACTAATTTAAA+TGG	+	chr3_3:71766952-71766971	None:intergenic	25.0%
!	AAAAAGGAAAGAAAGAAGAA+GGG	+	chr3_3:71767001-71767020	None:intergenic	25.0%
!	AAGAAAGTGAATTGTGAAAA+AGG	+	chr3_3:71767017-71767036	None:intergenic	25.0%
!	TTAACAAACATGAATAGGAA+TGG	-	chr3_3:71767067-71767086	Msa0469790:three_prime_UTR	25.0%
!	TAGAAGATGAAGAAGAAAAA+CGG	+	chr3_3:71767222-71767241	None:intergenic	25.0%
!!	ATTCATAAGATCTTTGCTTT+TGG	-	chr3_3:71767313-71767332	Msa0469790:three_prime_UTR	25.0%
!	AAAGATTAATCTTTCGAATC+AGG	+	chr3_3:71767641-71767660	None:intergenic	25.0%
!	ATTCGAAAGATTAATCTTTG+CGG	-	chr3_3:71767642-71767661	Msa0469790:CDS	25.0%
!!	TTGTTGATATTTTCATGGTT+TGG	-	chr3_3:71767784-71767803	Msa0469790:intron	25.0%
!	TATTTCAAGATTATGGTATG+TGG	-	chr3_3:71768075-71768094	Msa0469790:intron	25.0%
!	ACTAGTAAATCAAATGAGAT+AGG	-	chr3_3:71768256-71768275	Msa0469790:intron	25.0%
!!!	CTTGTCTATGTATTTTTACT+TGG	-	chr3_3:71768649-71768668	Msa0469790:intron	25.0%
!	TTCATATCAATCAAGTTTGA+AGG	-	chr3_3:71768760-71768779	Msa0469790:intron	25.0%
!	CTATTATTTGTTTGTGTCTT+TGG	-	chr3_3:71769147-71769166	Msa0469790:CDS	25.0%
!	CTACTATTCATATTGACATA+TGG	-	chr3_3:71769217-71769236	Msa0469790:CDS	25.0%
!!	TGCTTTAGATTACCAAAAAA+TGG	-	chr3_3:71769315-71769334	Msa0469790:CDS	25.0%
	AATTTAAATGGATGGATGGA+AGG	+	chr3_3:71766940-71766959	None:intergenic	30.0%
	GAAAAAGGAAAGAAAGAAGA+AGG	+	chr3_3:71767002-71767021	None:intergenic	30.0%
	ACATGAATAGGAATGGATAT+AGG	-	chr3_3:71767074-71767093	Msa0469790:three_prime_UTR	30.0%
	CATGAATAGGAATGGATATA+GGG	-	chr3_3:71767075-71767094	Msa0469790:three_prime_UTR	30.0%
!!!	TTGTGAACTAGCAACTTTTT+TGG	+	chr3_3:71767248-71767267	None:intergenic	30.0%
	TGAATAGAAGAAGAATTTGG+TGG	+	chr3_3:71767298-71767317	None:intergenic	30.0%
!!	AAAAAGAAGTTGGTGGAAAA+AGG	-	chr3_3:71767718-71767737	Msa0469790:CDS	30.0%
!!!	TGATATTTTCATGGTTTGGT+TGG	-	chr3_3:71767788-71767807	Msa0469790:intron	30.0%
!!!	GATATTTTCATGGTTTGGTT+GGG	-	chr3_3:71767789-71767808	Msa0469790:intron	30.0%
!!!	ATATTTTCATGGTTTGGTTG+GGG	-	chr3_3:71767790-71767809	Msa0469790:intron	30.0%
!	TTGTGATGATGACGAAATTA+AGG	-	chr3_3:71767906-71767925	Msa0469790:intron	30.0%
	ACTAGTAGTAGTAAGACATA+AGG	-	chr3_3:71767943-71767962	Msa0469790:intron	30.0%
	TAGTAGTAAGACATAAGGAT+GGG	-	chr3_3:71767948-71767967	Msa0469790:intron	30.0%
	GAGCATTATTATTATGACAC+AGG	-	chr3_3:71768045-71768064	Msa0469790:intron	30.0%
	AAGATTATGGTATGTGGATT+TGG	-	chr3_3:71768081-71768100	Msa0469790:intron	30.0%
	ATTAGGGTACACAACTAATT+TGG	-	chr3_3:71768110-71768129	Msa0469790:intron	30.0%
	TCAAATTGTATCAAATCCGT+CGG	-	chr3_3:71768430-71768449	Msa0469790:intron	30.0%
	AGTAGCTGAGCATAAAAATT+AGG	-	chr3_3:71768465-71768484	Msa0469790:intron	30.0%
!	TCATTAGATTTTGCTTTGTG+TGG	-	chr3_3:71768677-71768696	Msa0469790:intron	30.0%
!	CATTAGATTTTGCTTTGTGT+GGG	-	chr3_3:71768678-71768697	Msa0469790:intron	30.0%
	ATTCTCATTTCTCATTCCAA+GGG	+	chr3_3:71768710-71768729	None:intergenic	30.0%
	TCAATCAAGTTTGAAGGAAA+TGG	-	chr3_3:71768766-71768785	Msa0469790:intron	30.0%
	CAATCAAGTTTGAAGGAAAT+GGG	-	chr3_3:71768767-71768786	Msa0469790:intron	30.0%
	AATCAAGTTTGAAGGAAATG+GGG	-	chr3_3:71768768-71768787	Msa0469790:intron	30.0%
	GTCTACTATACTTTATTCCA+TGG	+	chr3_3:71769067-71769086	None:intergenic	30.0%
	GAAAGTGACACCAATTAATT+TGG	-	chr3_3:71769092-71769111	Msa0469790:intron	30.0%
!	GACACCAATTAATTTGGTTA+TGG	-	chr3_3:71769098-71769117	Msa0469790:intron	30.0%
!	TAAATAGCAAAGTGATGATG+AGG	+	chr3_3:71769174-71769193	None:intergenic	30.0%
!!	TTTGCATGCTTTGAGTATTT+TGG	-	chr3_3:71769370-71769389	Msa0469790:CDS	30.0%
!!	TTGCATGCTTTGAGTATTTT+GGG	-	chr3_3:71769371-71769390	Msa0469790:CDS	30.0%
	CTTCATAAAAAAGACAGTAC+AGG	-	chr3_3:71769447-71769466	Msa0469790:CDS	30.0%
	TCCTGTAGCATTATACAATA+GGG	+	chr3_3:71769624-71769643	None:intergenic	30.0%
	TTGTCTTATAGTTGTCTTAG+TGG	-	chr3_3:71769645-71769664	Msa0469790:five_prime_UTR	30.0%
	GCCTTTCATTCAAGCATAAA+GGG	+	chr3_3:71767153-71767172	None:intergenic	35.0%
	AGCCTTTCATTCAAGCATAA+AGG	+	chr3_3:71767154-71767173	None:intergenic	35.0%
	GAATGAAAGGCTTCTTCTAT+TGG	-	chr3_3:71767162-71767181	Msa0469790:three_prime_UTR	35.0%
	AAGAAAAACGGTGGTTATGA+TGG	+	chr3_3:71767210-71767229	None:intergenic	35.0%
	AAGATGAAGAAGAAAAACGG+TGG	+	chr3_3:71767219-71767238	None:intergenic	35.0%
!!!	TGAACTAGCAACTTTTTTGG+AGG	+	chr3_3:71767245-71767264	None:intergenic	35.0%
!	ATGATTTTACCTTCTGGACT+AGG	+	chr3_3:71767409-71767428	None:intergenic	35.0%
	GAATCAGGCATGATCATATT+CGG	+	chr3_3:71767626-71767645	None:intergenic	35.0%
	GTAGTAGTAAGACATAAGGA+TGG	-	chr3_3:71767947-71767966	Msa0469790:intron	35.0%
!	TTGGGTCATTGTTTTCTTCT+TGG	-	chr3_3:71767986-71768005	Msa0469790:intron	35.0%
!	TTATGGTATGTGGATTTGGT+AGG	-	chr3_3:71768085-71768104	Msa0469790:intron	35.0%
!	TATGGTATGTGGATTTGGTA+GGG	-	chr3_3:71768086-71768105	Msa0469790:intron	35.0%
	GTGTATTAGATGCTGACATA+AGG	+	chr3_3:71768391-71768410	None:intergenic	35.0%
	TTACTAACAGTGCAACTAGT+TGG	-	chr3_3:71768564-71768583	Msa0469790:intron	35.0%
	TACTAACAGTGCAACTAGTT+GGG	-	chr3_3:71768565-71768584	Msa0469790:intron	35.0%
	CATTCTCATTTCTCATTCCA+AGG	+	chr3_3:71768711-71768730	None:intergenic	35.0%
	GTTCTTCTTGCAATTCTCTA+GGG	+	chr3_3:71768836-71768855	None:intergenic	35.0%
	AAAGAGAAAGAAGAAGACCA+TGG	-	chr3_3:71769047-71769066	Msa0469790:intron	35.0%
!!	TGCATGCTTTGAGTATTTTG+GGG	-	chr3_3:71769372-71769391	Msa0469790:CDS	35.0%
!!	CTTTGAGTATTTTGGGGAAT+GGG	-	chr3_3:71769378-71769397	Msa0469790:CDS	35.0%
!!	TTTGAGTATTTTGGGGAATG+GGG	-	chr3_3:71769379-71769398	Msa0469790:CDS	35.0%
	TGGGAAACAATGAAGCAAAA+GGG	-	chr3_3:71769597-71769616	Msa0469790:five_prime_UTR	35.0%
	TCCCTATTGTATAATGCTAC+AGG	-	chr3_3:71769620-71769639	Msa0469790:five_prime_UTR	35.0%
	GTCCTGTAGCATTATACAAT+AGG	+	chr3_3:71769625-71769644	None:intergenic	35.0%
	TTAGGGTGGAAATTGCAACA+TGG	+	chr3_3:71767109-71767128	None:intergenic	40.0%
	CAACAACTACTTGTTTAGGG+TGG	+	chr3_3:71767123-71767142	None:intergenic	40.0%
	CACCCTAAACAAGTAGTTGT+TGG	-	chr3_3:71767121-71767140	Msa0469790:three_prime_UTR	40.0%
	CGCCAACAACTACTTGTTTA+GGG	+	chr3_3:71767126-71767145	None:intergenic	40.0%
	ACGCCAACAACTACTTGTTT+AGG	+	chr3_3:71767127-71767146	None:intergenic	40.0%
	GCCCTTTATGCTTGAATGAA+AGG	-	chr3_3:71767149-71767168	Msa0469790:three_prime_UTR	40.0%
!	CTTCTATTGGCTGCAAAACA+AGG	-	chr3_3:71767175-71767194	Msa0469790:three_prime_UTR	40.0%
!	TATTGGCTGCAAAACAAGGT+CGG	-	chr3_3:71767179-71767198	Msa0469790:three_prime_UTR	40.0%
	AAAAACGGTGGTTATGATGG+TGG	+	chr3_3:71767207-71767226	None:intergenic	40.0%
!!	ATTTGGTGGCTTTGTGTGTA+CGG	+	chr3_3:71767284-71767303	None:intergenic	40.0%
	TTAATCTTTGCGGTCTCATG+TGG	-	chr3_3:71767652-71767671	Msa0469790:CDS	40.0%
	CATGTTTGAATGTCTTCACG+TGG	-	chr3_3:71767874-71767893	Msa0469790:intron	40.0%
	ATGTCTTCACGTGGAAGATT+AGG	-	chr3_3:71767883-71767902	Msa0469790:intron	40.0%
	AGGATGGGAAAGAAAGCTTT+CGG	-	chr3_3:71767963-71767982	Msa0469790:intron	40.0%
!	TCATTGTTTTCTTCTTGGCG+TGG	-	chr3_3:71767991-71768010	Msa0469790:intron	40.0%
!	TGTGGATTTGGTAGGGAATT+AGG	-	chr3_3:71768093-71768112	Msa0469790:intron	40.0%
!	GTGGATTTGGTAGGGAATTA+GGG	-	chr3_3:71768094-71768113	Msa0469790:intron	40.0%
	ACTAACAGTGCAACTAGTTG+GGG	-	chr3_3:71768566-71768585	Msa0469790:intron	40.0%
	TCATTTCTCATTCCAAGGGT+AGG	+	chr3_3:71768706-71768725	None:intergenic	40.0%
	GGTTCTTCTTGCAATTCTCT+AGG	+	chr3_3:71768837-71768856	None:intergenic	40.0%
	GAATTGCAAGAAGAACCATG+AGG	-	chr3_3:71768840-71768859	Msa0469790:intron	40.0%
!	TGGTCTCTAATTTGTCCTCA+TGG	+	chr3_3:71768858-71768877	None:intergenic	40.0%
!	TTTTCTTCCACCTTATGAGC+TGG	+	chr3_3:71768948-71768967	None:intergenic	40.0%
	CTCATAAGGTGGAAGAAAAC+TGG	-	chr3_3:71768949-71768968	Msa0469790:intron	40.0%
	ATAAGGTGGAAGAAAACTGG+AGG	-	chr3_3:71768952-71768971	Msa0469790:intron	40.0%
!!	GCTTTGAGTATTTTGGGGAA+TGG	-	chr3_3:71769377-71769396	Msa0469790:CDS	40.0%
	AAGACAGTACAGGCTGTAAA+AGG	-	chr3_3:71769457-71769476	Msa0469790:exon	40.0%
	AGACAGTACAGGCTGTAAAA+GGG	-	chr3_3:71769458-71769477	Msa0469790:exon	40.0%
	TCCTTCACACTTCACAGTAT+GGG	+	chr3_3:71769535-71769554	None:intergenic	40.0%
	ATCCTTCACACTTCACAGTA+TGG	+	chr3_3:71769536-71769555	None:intergenic	40.0%
!!!	ACCTAACATGGGGAGTATTT+TGG	+	chr3_3:71769569-71769588	None:intergenic	40.0%
	CTTCATTGTTTCCCACTACA+TGG	+	chr3_3:71769592-71769611	None:intergenic	40.0%
	GTGGGAAACAATGAAGCAAA+AGG	-	chr3_3:71769596-71769615	Msa0469790:five_prime_UTR	40.0%
	TCTCGTCACTGCAAATCTCA+TGG	-	chr3_3:71767358-71767377	Msa0469790:three_prime_UTR	45.0%
	GATATCTCTCCTAGTCCAGA+AGG	-	chr3_3:71767397-71767416	Msa0469790:three_prime_UTR	45.0%
!!!	TTTTCATGGTTTGGTTGGGG+AGG	-	chr3_3:71767793-71767812	Msa0469790:intron	45.0%
	TGGGAAAGAAAGCTTTCGGT+TGG	-	chr3_3:71767967-71767986	Msa0469790:intron	45.0%
	GGGAAAGAAAGCTTTCGGTT+GGG	-	chr3_3:71767968-71767987	Msa0469790:intron	45.0%
	TACTAATACCATGCTGCCGA+CGG	+	chr3_3:71768449-71768468	None:intergenic	45.0%
!	CTTCTTGCAATTCTCTAGGG+AGG	+	chr3_3:71768833-71768852	None:intergenic	45.0%
	TGCATGCTCTATCACACTCT+TGG	+	chr3_3:71768878-71768897	None:intergenic	45.0%
	CAAAGTCACGTGACACATTC+AGG	-	chr3_3:71768896-71768915	Msa0469790:intron	45.0%
	ACACATTCAGGTGGAGAAAG+AGG	-	chr3_3:71768908-71768927	Msa0469790:intron	45.0%
	TTCAGGTGGAGAAAGAGGAT+TGG	-	chr3_3:71768913-71768932	Msa0469790:intron	45.0%
	GTCACATGTTCCAGCTCATA+AGG	-	chr3_3:71768935-71768954	Msa0469790:intron	45.0%
	ACATGTTCCAGCTCATAAGG+TGG	-	chr3_3:71768938-71768957	Msa0469790:intron	45.0%
	GGAGCAGTGAAAGTCAGAAA+AGG	-	chr3_3:71769006-71769025	Msa0469790:intron	45.0%
	CAGTGAAAGTCAGAAAAGGC+TGG	-	chr3_3:71769010-71769029	Msa0469790:intron	45.0%
	AAGTCAGAAAAGGCTGGATG+AGG	-	chr3_3:71769016-71769035	Msa0469790:intron	45.0%
	TCCCATACTGTGAAGTGTGA+AGG	-	chr3_3:71769531-71769550	Msa0469790:five_prime_UTR	45.0%
	GCCAAAATACTCCCCATGTT+AGG	-	chr3_3:71769565-71769584	Msa0469790:five_prime_UTR	45.0%
	CACTACATGGACCTAACATG+GGG	+	chr3_3:71769579-71769598	None:intergenic	45.0%
	CCACTACATGGACCTAACAT+GGG	+	chr3_3:71769580-71769599	None:intergenic	45.0%
	CCATGTTAGGTCCATGTAGT+GGG	-	chr3_3:71769578-71769597	Msa0469790:five_prime_UTR	45.0%
!!!	TAATTTTAATTTATACTTTT+TGG	+	chr3_3:71768620-71768639	None:intergenic	5.0%
!	GGTTTGGTTGGGGAGGAATT+TGG	-	chr3_3:71767800-71767819	Msa0469790:intron	50.0%
	TATCAAATCCGTCGGCAGCA+TGG	-	chr3_3:71768438-71768457	Msa0469790:intron	50.0%
	TTTGTGTGGGAACCTACCCT+TGG	-	chr3_3:71768691-71768710	Msa0469790:intron	50.0%
!	GGAAAAGAGCACGGTCTCAA+AGG	-	chr3_3:71768801-71768820	Msa0469790:intron	50.0%
!	CTTGCAATTCTCTAGGGAGG+AGG	+	chr3_3:71768830-71768849	None:intergenic	50.0%
	AGTCACGTGACACATTCAGG+TGG	-	chr3_3:71768899-71768918	Msa0469790:intron	50.0%
	TGTATGCCACGTAGGCAACA+AGG	-	chr3_3:71768975-71768994	Msa0469790:intron	50.0%
	CTTCAACCTTGTTGCCTACG+TGG	+	chr3_3:71768984-71769003	None:intergenic	50.0%
	CACGTAGGCAACAAGGTTGA+AGG	-	chr3_3:71768982-71769001	Msa0469790:intron	50.0%
	GTAGGCAACAAGGTTGAAGG+AGG	-	chr3_3:71768985-71769004	Msa0469790:intron	50.0%
	CCCATGTTAGGTCCATGTAG+TGG	-	chr3_3:71769577-71769596	Msa0469790:five_prime_UTR	50.0%
	CCCACTACATGGACCTAACA+TGG	+	chr3_3:71769581-71769600	None:intergenic	50.0%
	AAGGAAATGGGGTAGCCTCG+TGG	-	chr3_3:71768779-71768798	Msa0469790:intron	55.0%
	AGGAAATGGGGTAGCCTCGT+GGG	-	chr3_3:71768780-71768799	Msa0469790:intron	55.0%
	AGCCTCGTGGGAAAAGAGCA+CGG	-	chr3_3:71768792-71768811	Msa0469790:intron	55.0%
!	ACTGGAGGTGTATGCCACGT+AGG	-	chr3_3:71768967-71768986	Msa0469790:intron	55.0%
!	GACCGTGCTCTTTTCCCACG+AGG	+	chr3_3:71768797-71768816	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	71766878	71769668	71766878	ID=Msa0469790;Name=Msa0469790
chr3_3	mRNA	71766878	71769668	71766878	ID=Msa0469790-mRNA-1;Parent=Msa0469790;Name=Msa0469790-mRNA-1;_AED=0.03;_eAED=0.03;_QI=198\|1\|1\|1\|1\|1\|2\|594\|221
chr3_3	exon	71766878	71767794	71766878	ID=Msa0469790-mRNA-1:exon:17680;Parent=Msa0469790-mRNA-1
chr3_3	exon	71769128	71769668	71769128	ID=Msa0469790-mRNA-1:exon:17679;Parent=Msa0469790-mRNA-1
chr3_3	five_prime_UTR	71769471	71769668	71769471	ID=Msa0469790-mRNA-1:five_prime_utr;Parent=Msa0469790-mRNA-1
chr3_3	CDS	71769128	71769470	71769128	ID=Msa0469790-mRNA-1:cds;Parent=Msa0469790-mRNA-1
chr3_3	CDS	71767472	71767794	71767472	ID=Msa0469790-mRNA-1:cds;Parent=Msa0469790-mRNA-1
chr3_3	three_prime_UTR	71766878	71767471	71766878	ID=Msa0469790-mRNA-1:three_prime_utr;Parent=Msa0469790-mRNA-1

Gene Sequence

>Msa0469790

ATGAATAGGAATGGATATAGGGATGAAAAACCATGTTGCAATTTCCACCCTAAACAAGTAGTTGTTGGCGTATGCCCTTTATGCTTGAATGAAAGGCTTCTTCTATTGGCTGCAAAACAAGGTCGGCGCCACCATCATAACCACCGTTTTTCTTCTTCATCTTCTACCTCCAAAAAAGTTGCTAGTTCACAAAAGCTTCAAAGTTCCGTACACACAAAGCCACCAAATTCTTCTTCTATTCATAAGATCTTTGCTTTTGGTTCTCTCTTCACTCGTCTTGAATCTCGTCACTGCAAATCTCATGGCAACTTTCACTATGATGATATCTCTCCTAGTCCAGAAGAAGACTCATTCATATCAATCAAGTTTGAAGGAAATGGGGTAGCCTCGTGGGAAAAGAGCACGGTCTCAAAGGTGTCCTCCTCCCTAGAGAATTGCAAGAAGAACCATGAGGACAAATTAGAGACCAAGAGTGTGATAGAGCATGCAAAGTCACGTGACACATTCAGGTGGAGAAAGAGGATTGGTCACATGTTCCAGCTCATAAGGTGGAAGAAAACTGGAGGTGTATGCCACGTAGGCAACAAGGTTGAAGGAGGAGCAGTGAAAGTCAGAAAAGGCTGGATGAGGACTCTGACAAAGAGAAAGAAGAAGACCATGGAATAA

Protein sequence

>Msa0469790

MNRNGYRDEKPCCNFHPKQVVVGVCPLCLNERLLLLAAKQGRRHHHNHRFSSSSSTSKKVASSQKLQSSVHTKPPNSSSIHKIFAFGSLFTRLESRHCKSHGNFHYDDISPSPEEDSFISIKFEGNGVASWEKSTVSKVSSSLENCKKNHEDKLETKSVIEHAKSRDTFRWRKRIGHMFQLIRWKKTGGVCHVGNKVEGGAVKVRKGWMRTLTKRKKKTME*