AlfalfaGEDB | Msa0469790

M. sativa cultivar zhongmu-4 / Msa0469790

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0469790	XP_003602028.1	99.095	221	1	1	1	221	1	220	2.54e-158	447

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0469790	G7J4F6	99.095	221	1	1	1	221	1	220	1.22e-158	447

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0469790	-0.818916	1.526685e-52	-8.615850e-47
Msa0029540	Msa0469790	-0.812368	4.391425e-51	-8.615850e-47
Msa0094010	Msa0469790	0.803593	3.237473e-49	-8.615850e-47
Msa0099510	Msa0469790	0.812866	3.417966e-51	-8.615850e-47
Msa0125370	Msa0469790	-0.811655	6.280134e-51	-8.615850e-47
Msa0138970	Msa0469790	-0.839499	1.527415e-57	-8.615850e-47
Msa0140520	Msa0469790	-0.803122	4.051849e-49	-8.615850e-47
Msa0145950	Msa0469790	0.815983	6.989848e-52	-8.615850e-47
Msa0148120	Msa0469790	0.810190	1.303826e-50	-8.615850e-47
Msa0152840	Msa0469790	0.811374	7.229964e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0469790	MtrunA17_Chr3g0124651	99.095	221	1	1	1	221	1	220	2.34e-162	447

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0469790	AT1G21830.1	41.228	228	94	10	4	218	2	202	1.34e-35	125
Msa0469790	AT1G44608.1	35.263	190	87	7	13	199	12	168	1.49e-18	80.1

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Find 91 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTAAAATAGAAGAGTAT+GGG	0.548003	3_3:+71769646	None:intergenic
AAAGAGAAAGAAGAAGACCA+TGG	0.647060	3_3:-71767477	Msa0469790:CDS
AACTAATTTAAATGGATGGA+TGG	0.530223	3_3:+71769583	None:intergenic
AAGAAAGTGAATTGTGAAAA+AGG	0.296918	3_3:+71769510	None:intergenic
AAGACAGTACAGGCTGTAAA+AGG	0.240073	3_3:-71767067	Msa0469790:three_prime_UTR
AAGGAAATGGGGTAGCCTCG+TGG	0.628547	3_3:-71767745	Msa0469790:CDS
AAGTCAGAAAAGGCTGGATG+AGG	0.577043	3_3:-71767508	Msa0469790:CDS
AATCAAGTTTGAAGGAAATG+GGG	0.642471	3_3:-71767756	Msa0469790:CDS
AATTCCATAACCAAATTAAT+TGG	0.200699	3_3:+71767422	None:intergenic
AATTTAAATGGATGGATGGA+AGG	0.543920	3_3:+71769587	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTTAAATGGATGGATGGA+AGG	+	chr3_3:71766940-71766959	None:intergenic	30.0%
GAAAAAGGAAAGAAAGAAGA+AGG	+	chr3_3:71767002-71767021	None:intergenic	30.0%
ACATGAATAGGAATGGATAT+AGG	-	chr3_3:71767074-71767093	Msa0469790:three_prime_UTR	30.0%
CATGAATAGGAATGGATATA+GGG	-	chr3_3:71767075-71767094	Msa0469790:three_prime_UTR	30.0%
TGAATAGAAGAAGAATTTGG+TGG	+	chr3_3:71767298-71767317	None:intergenic	30.0%
ACTAGTAGTAGTAAGACATA+AGG	-	chr3_3:71767943-71767962	Msa0469790:intron	30.0%
TAGTAGTAAGACATAAGGAT+GGG	-	chr3_3:71767948-71767967	Msa0469790:intron	30.0%
GAGCATTATTATTATGACAC+AGG	-	chr3_3:71768045-71768064	Msa0469790:intron	30.0%
AAGATTATGGTATGTGGATT+TGG	-	chr3_3:71768081-71768100	Msa0469790:intron	30.0%
ATTAGGGTACACAACTAATT+TGG	-	chr3_3:71768110-71768129	Msa0469790:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	71766878	71769668	71766878	ID=Msa0469790;Name=Msa0469790
chr3_3	mRNA	71766878	71769668	71766878	ID=Msa0469790-mRNA-1;Parent=Msa0469790;Name=Msa0469790-mRNA-1;_AED=0.03;_eAED=0.03;_QI=198\|1\|1\|1\|1\|1\|2\|594\|221
chr3_3	exon	71766878	71767794	71766878	ID=Msa0469790-mRNA-1:exon:17680;Parent=Msa0469790-mRNA-1
chr3_3	exon	71769128	71769668	71769128	ID=Msa0469790-mRNA-1:exon:17679;Parent=Msa0469790-mRNA-1
chr3_3	five_prime_UTR	71769471	71769668	71769471	ID=Msa0469790-mRNA-1:five_prime_utr;Parent=Msa0469790-mRNA-1
chr3_3	CDS	71769128	71769470	71769128	ID=Msa0469790-mRNA-1:cds;Parent=Msa0469790-mRNA-1
chr3_3	CDS	71767472	71767794	71767472	ID=Msa0469790-mRNA-1:cds;Parent=Msa0469790-mRNA-1
chr3_3	three_prime_UTR	71766878	71767471	71766878	ID=Msa0469790-mRNA-1:three_prime_utr;Parent=Msa0469790-mRNA-1

Gene Sequence

>Msa0469790

ATGAATAGGAATGGATATAGGGATGAAAAACCATGTTGCAATTTCCACCCTAAACAAGTAGTTGTTGGCGTATGCCCTTTATGCTTGAATGAAAGGCTTCTTCTATTGGCTGCAAAACAAGGTCGGCGCCACCATCATAACCACCGTTTTTCTTCTTCATCTTCTACCTCCAAAAAAGTTGCTAGTTCACAAAAGCTTCAAAGTTCCGTACACACAAAGCCACCAAATTCTTCTTCTATTCATAAGATCTTTGCTTTTGGTTCTCTCTTCACTCGTCTTGAATCTCGTCACTGCAAATCTCATGGCAACTTTCACTATGATGATATCTCTCCTAGTCCAGAAGAAGACTCATTCATATCAATCAAGTTTGAAGGAAATGGGGTAGCCTCGTGGGAAAAGAGCACGGTCTCAAAGGTGTCCTCCTCCCTAGAGAATTGCAAGAAGAACCATGAGGACAAATTAGAGACCAAGAGTGTGATAGAGCATGCAAAGTCACGTGACACATTCAGGTGGAGAAAGAGGATTGGTCACATGTTCCAGCTCATAAGGTGGAAGAAAACTGGAGGTGTATGCCACGTAGGCAACAAGGTTGAAGGAGGAGCAGTGAAAGTCAGAAAAGGCTGGATGAGGACTCTGACAAAGAGAAAGAAGAAGACCATGGAATAA

Protein sequence

>Msa0469790

MNRNGYRDEKPCCNFHPKQVVVGVCPLCLNERLLLLAAKQGRRHHHNHRFSSSSSTSKKVASSQKLQSSVHTKPPNSSSIHKIFAFGSLFTRLESRHCKSHGNFHYDDISPSPEEDSFISIKFEGNGVASWEKSTVSKVSSSLENCKKNHEDKLETKSVIEHAKSRDTFRWRKRIGHMFQLIRWKKTGGVCHVGNKVEGGAVKVRKGWMRTLTKRKKKTME*