Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303630 | XP_003597635.1 | 98.621 | 145 | 2 | 0 | 1 | 145 | 1 | 145 | 2.14e-99 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303630 | sp|Q9M0E2|RL282_ARATH | 72.028 | 143 | 40 | 0 | 1 | 143 | 1 | 143 | 1.37e-72 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303630 | G7IUL4 | 98.621 | 145 | 2 | 0 | 1 | 145 | 1 | 145 | 1.02e-99 | 291 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027590 | Msa0303630 | 0.811270 | 7.612770e-51 | -8.615850e-47 |
| Msa0075350 | Msa0303630 | 0.811770 | 5.927804e-51 | -8.615850e-47 |
| Msa0192750 | Msa0303630 | 0.830230 | 3.300900e-55 | -8.615850e-47 |
| Msa0235050 | Msa0303630 | 0.814856 | 1.244891e-51 | -8.615850e-47 |
| Msa0303630 | Msa0369410 | 0.813248 | 2.818172e-51 | -8.615850e-47 |
| Msa0303630 | Msa0481850 | 0.802649 | 5.074408e-49 | -8.615850e-47 |
| Msa0303630 | Msa0929680 | 0.806308 | 8.760023e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303630 | MtrunA17_Chr2g0330561 | 98.621 | 145 | 2 | 0 | 1 | 145 | 1 | 145 | 1.97e-103 | 291 |
| Msa0303630 | MtrunA17_Chr8g0341511 | 90.210 | 143 | 14 | 0 | 1 | 143 | 1 | 143 | 1.28e-93 | 267 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303630 | AT4G29410.1 | 72.028 | 143 | 40 | 0 | 1 | 143 | 1 | 143 | 1.39e-73 | 216 |
| Msa0303630 | AT4G29410.2 | 72.028 | 143 | 40 | 0 | 1 | 143 | 1 | 143 | 1.39e-73 | 216 |
| Msa0303630 | AT2G19730.2 | 72.727 | 143 | 39 | 0 | 1 | 143 | 1 | 143 | 9.25e-73 | 214 |
| Msa0303630 | AT2G19730.1 | 72.727 | 143 | 39 | 0 | 1 | 143 | 1 | 143 | 9.25e-73 | 214 |
| Msa0303630 | AT2G19730.3 | 72.727 | 143 | 39 | 0 | 1 | 143 | 1 | 143 | 9.25e-73 | 214 |
Find 58 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCAAATCCAAAGCAAATT+AGG | 0.196350 | 2_3:+60843581 | None:intergenic |
| CCTGTTCAACATTGATTAAA+TGG | 0.216671 | 2_3:-60846918 | None:intergenic |
| GATTTATAGCAAAATGAAAT+TGG | 0.232438 | 2_3:-60843608 | None:intergenic |
| TTAAGATTGTAAAGATTATT+AGG | 0.248943 | 2_3:-60843903 | None:intergenic |
| ACCCTAATTTGCTTTGGATT+TGG | 0.255167 | 2_3:-60843583 | None:intergenic |
| TCCCATCAAACCTTTCAAAT+TGG | 0.271284 | 2_3:-60846941 | None:intergenic |
| CAAGGTTGAGTGCTGTTAAT+AGG | 0.286054 | 2_3:+60846517 | Msa0303630:CDS |
| CATCTTATTATACTTTAAAC+TGG | 0.289137 | 2_3:+60846746 | Msa0303630:three_prime_UTR |
| CAGTACCTGGACCACTTGTT+TGG | 0.329181 | 2_3:+60843802 | Msa0303630:CDS |
| TTGGAAACCCTAATTTGCTT+TGG | 0.357324 | 2_3:-60843589 | None:intergenic |
| TCCAAATCCAAAGCAAATTA+GGG | 0.361271 | 2_3:+60843582 | Msa0303630:five_prime_UTR |
| ATACTAACCAGAGTATTTGT+AGG | 0.368013 | 2_3:-60843928 | None:intergenic |
| TAGAATACTGGAGTTCAGTT+TGG | 0.380104 | 2_3:+60846684 | Msa0303630:three_prime_UTR |
| GAACTCCAGTATTCTAGAAT+AGG | 0.383776 | 2_3:-60846677 | None:intergenic |
| AAACTATAGTCTATGCCATT+TGG | 0.386715 | 2_3:-60846811 | None:intergenic |
| TAGAATGCATAAACTACAAA+AGG | 0.393995 | 2_3:-60846650 | None:intergenic |
| GGCCAATTTGAAAGGTTTGA+TGG | 0.397934 | 2_3:+60846939 | Msa0303630:three_prime_UTR |
| CCATTTAATCAATGTTGAAC+AGG | 0.401273 | 2_3:+60846918 | Msa0303630:three_prime_UTR |
| AGAACCCTATTCTAGAATAC+TGG | 0.410113 | 2_3:+60846672 | Msa0303630:three_prime_UTR |
| AGTACCTGGACCACTTGTTT+GGG | 0.420976 | 2_3:+60843803 | Msa0303630:CDS |
| GAGTGAGATTTGAGAAGAAG+AGG | 0.422905 | 2_3:-60843645 | None:intergenic |
| GGCTAAGGCTGTGCAAAATC+AGG | 0.425465 | 2_3:+60844594 | Msa0303630:CDS |
| AGCCTCAGAGTTGCAAAGTC+TGG | 0.433352 | 2_3:+60846540 | Msa0303630:CDS |
| AGAATGCATAAACTACAAAA+GGG | 0.447550 | 2_3:-60846649 | None:intergenic |
| AACTCCAGTATTCTAGAATA+GGG | 0.453784 | 2_3:-60846676 | None:intergenic |
| CATGTCATAATTAAACAATC+TGG | 0.459300 | 2_3:-60846981 | None:intergenic |
| AAGAAGATGGCAACAGTACC+TGG | 0.461908 | 2_3:+60843789 | Msa0303630:exon |
| CTGTTATGAAGAAAGAGTTC+AGG | 0.475739 | 2_3:+60844566 | Msa0303630:CDS |
| CAAAGATCAGTCTGTGTTGT+TGG | 0.477149 | 2_3:+60844492 | Msa0303630:CDS |
| GCCAATTTGAAAGGTTTGAT+GGG | 0.480399 | 2_3:+60846940 | Msa0303630:three_prime_UTR |
| ACTGTAACTATTCAGTCTGC+TGG | 0.486689 | 2_3:+60844469 | Msa0303630:CDS |
| CTGGCGCTAAGAAGAGAAAC+AGG | 0.489005 | 2_3:+60846559 | Msa0303630:CDS |
| AATACCTTGGATTGTTGTTG+AGG | 0.511851 | 2_3:-60843669 | None:intergenic |
| GTTGAACAGGCCAATTTGAA+AGG | 0.517504 | 2_3:+60846931 | Msa0303630:three_prime_UTR |
| CTTAACTCCTACAAATACTC+TGG | 0.532818 | 2_3:+60843921 | Msa0303630:CDS |
| AAGAAGAGAAACAGGCATGC+AGG | 0.536717 | 2_3:+60846567 | Msa0303630:CDS |
| AGAGTTCAGGAGGATGGCTA+AGG | 0.539424 | 2_3:+60844579 | Msa0303630:CDS |
| ATCTCCCAAACAAGTGGTCC+AGG | 0.541178 | 2_3:-60843807 | None:intergenic |
| ATCTTATTATACTTTAAACT+GGG | 0.543535 | 2_3:+60846747 | Msa0303630:three_prime_UTR |
| CTCTCCTCAACAACAATCCA+AGG | 0.551487 | 2_3:+60843665 | Msa0303630:five_prime_UTR |
| GATTTGTGAAGAAAAGCAGC+AGG | 0.552543 | 2_3:-60844544 | None:intergenic |
| TTAAGAAGGCGGCTCTTGCA+AGG | 0.554765 | 2_3:+60846499 | Msa0303630:CDS |
| CAGTTTAAAGTATAATAAGA+TGG | 0.561262 | 2_3:-60846745 | None:intergenic |
| AGAGCCGCCTTCTTAAGATC+AGG | 0.566181 | 2_3:-60846492 | None:intergenic |
| CTACAGACCTGATCTTAAGA+AGG | 0.570922 | 2_3:+60846485 | Msa0303630:CDS |
| CGCCAGACTTTGCAACTCTG+AGG | 0.579160 | 2_3:-60846542 | None:intergenic |
| GGTCCGATTAATTGAAGGAG+AGG | 0.586322 | 2_3:-60846834 | None:intergenic |
| TTCACGATCTCCCAAACAAG+TGG | 0.590177 | 2_3:-60843813 | None:intergenic |
| TCATAATTAAACAATCTGGC+CGG | 0.592265 | 2_3:-60846977 | None:intergenic |
| GAAGAAAGAGTTCAGGAGGA+TGG | 0.603864 | 2_3:+60844573 | Msa0303630:CDS |
| AATGCATAAACTACAAAAGG+GGG | 0.609429 | 2_3:-60846647 | None:intergenic |
| TGTGATGTTGAGTGTCAACT+AGG | 0.622378 | 2_3:-60846889 | None:intergenic |
| TGTTGGCAACCACCAAGCCA+AGG | 0.638986 | 2_3:+60844509 | Msa0303630:CDS |
| TTATGAAGAAAGAGTTCAGG+AGG | 0.639998 | 2_3:+60844569 | Msa0303630:CDS |
| TTGTTTGGGAGATCGTGAAG+AGG | 0.651216 | 2_3:+60843817 | Msa0303630:CDS |
| GAATGCATAAACTACAAAAG+GGG | 0.658796 | 2_3:-60846648 | None:intergenic |
| ATGCATAAACTACAAAAGGG+GGG | 0.687813 | 2_3:-60846646 | None:intergenic |
| CAGACCTGATCTTAAGAAGG+CGG | 0.695458 | 2_3:+60846488 | Msa0303630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATAGTTTTATGATTAAT+AGG | + | chr2_3:60843971-60843990 | Msa0303630:intron | 10.0% |
| !! | ATTTCTAATTCAAAATAATT+TGG | - | chr2_3:60844835-60844854 | None:intergenic | 10.0% |
| !! | TTAAGATTGTAAAGATTATT+AGG | - | chr2_3:60843906-60843925 | None:intergenic | 15.0% |
| !!! | TGTTTTTATTATGGTATAAT+AGG | + | chr2_3:60844430-60844449 | Msa0303630:intron | 15.0% |
| !! | TAGTTCAAAAATAAAACATT+TGG | + | chr2_3:60844927-60844946 | Msa0303630:intron | 15.0% |
| !! | AACAAATAGATAATTTGAAT+GGG | - | chr2_3:60845223-60845242 | None:intergenic | 15.0% |
| !! | AAACAAATAGATAATTTGAA+TGG | - | chr2_3:60845224-60845243 | None:intergenic | 15.0% |
| !!! | AAACTATTTTGAATTATAAG+AGG | - | chr2_3:60845715-60845734 | None:intergenic | 15.0% |
| !!! | AAAATAATTTTGTACCTATA+TGG | + | chr2_3:60845835-60845854 | Msa0303630:intron | 15.0% |
| !!! | TTATTCCAAAATAATTTGTT+GGG | - | chr2_3:60846297-60846316 | None:intergenic | 15.0% |
| !!! | ATTATTCCAAAATAATTTGT+TGG | - | chr2_3:60846298-60846317 | None:intergenic | 15.0% |
| !!! | ACAAATTATTTTGGAATAAT+TGG | + | chr2_3:60846298-60846317 | Msa0303630:intron | 15.0% |
| !! | ATCTTATTATACTTTAAACT+GGG | + | chr2_3:60846747-60846766 | Msa0303630:three_prime_UTR | 15.0% |
| !!! | TTCAATTTAAATTTTCCAAA+TGG | + | chr2_3:60846796-60846815 | Msa0303630:three_prime_UTR | 15.0% |
| !! | GATTTATAGCAAAATGAAAT+TGG | - | chr2_3:60843611-60843630 | None:intergenic | 20.0% |
| !!! | TTATCTTTGATTTTCAGATT+TGG | + | chr2_3:60843719-60843738 | Msa0303630:intron | 20.0% |
| !!! | TGATTTTTTTAATTCTGTGA+TGG | + | chr2_3:60844006-60844025 | Msa0303630:intron | 20.0% |
| !! | TTTGCATCTTAAAGTATAAT+GGG | + | chr2_3:60844056-60844075 | Msa0303630:intron | 20.0% |
| !! | ATCACATTTGATTAAAACTT+AGG | - | chr2_3:60844278-60844297 | None:intergenic | 20.0% |
| !!! | CTTACTTCATGTTTTTATTA+TGG | + | chr2_3:60844421-60844440 | Msa0303630:intron | 20.0% |
| !! | TTATTATGGTATAATAGGTT+TGG | + | chr2_3:60844435-60844454 | Msa0303630:intron | 20.0% |
| !!! | AGTTGAAAATTGTTTTGAAT+TGG | + | chr2_3:60844803-60844822 | Msa0303630:intron | 20.0% |
| !! | TTAGAAATATTCACGATAAT+TGG | + | chr2_3:60844847-60844866 | Msa0303630:intron | 20.0% |
| !!! | GTTTTATTTTTGAACTAATC+CGG | - | chr2_3:60844924-60844943 | None:intergenic | 20.0% |
| !! | ACAAAAAGACTTAGATAAAA+AGG | - | chr2_3:60845449-60845468 | None:intergenic | 20.0% |
| !! | ATAAAAAGGTTAGATTCATT+AGG | - | chr2_3:60845739-60845758 | None:intergenic | 20.0% |
| !! | ACAATAAACAAGAGATAAAA+AGG | - | chr2_3:60845753-60845772 | None:intergenic | 20.0% |
| !! | AACTTGAATCAAAAAAATCA+AGG | - | chr2_3:60846215-60846234 | None:intergenic | 20.0% |
| !!! | CAGTTTAAAGTATAATAAGA+TGG | - | chr2_3:60846748-60846767 | None:intergenic | 20.0% |
| !! | CATCTTATTATACTTTAAAC+TGG | + | chr2_3:60846746-60846765 | Msa0303630:three_prime_UTR | 20.0% |
| !!! | TTTTGTCATTGTGCTTTTTA+GGG | + | chr2_3:60843696-60843715 | Msa0303630:intron | 25.0% |
| ! | TCTGTATTGTATTGTGTTAT+AGG | + | chr2_3:60843754-60843773 | Msa0303630:intron | 25.0% |
| !!! | TCTTTTTTGGTTAAAGAGTT+TGG | + | chr2_3:60843846-60843865 | Msa0303630:CDS | 25.0% |
| ! | CTTTGCATCTTAAAGTATAA+TGG | + | chr2_3:60844055-60844074 | Msa0303630:intron | 25.0% |
| !! | GTTTTCAGCTTAATTACATA+AGG | - | chr2_3:60844189-60844208 | None:intergenic | 25.0% |
| !! | AATAGTTACAGTTTTCTTGT+TGG | - | chr2_3:60844461-60844480 | None:intergenic | 25.0% |
| !! | GTTTTCATGTTTCACAATAT+TGG | + | chr2_3:60844707-60844726 | Msa0303630:intron | 25.0% |
| ! | ATTCAAATAGTTGTCATTCT+AGG | + | chr2_3:60844742-60844761 | Msa0303630:intron | 25.0% |
| !!! | GAAAATTGTTTTGAATTGGT+TGG | + | chr2_3:60844807-60844826 | Msa0303630:intron | 25.0% |
| ! | AAAATTCGAACAAAGAAAAG+GGG | - | chr2_3:60845002-60845021 | None:intergenic | 25.0% |
| ! | GAAAATTCGAACAAAGAAAA+GGG | - | chr2_3:60845003-60845022 | None:intergenic | 25.0% |
| ! | TGAAATATTATTGTTACGCT+TGG | + | chr2_3:60845079-60845098 | Msa0303630:intron | 25.0% |
| !!! | AGTTTTAAGTTACAAAAGAG+AGG | - | chr2_3:60845184-60845203 | None:intergenic | 25.0% |
| ! | TAATTTACACAGAAATCACA+TGG | - | chr2_3:60845525-60845544 | None:intergenic | 25.0% |
| ! | GGATTCTTCTTATATGTTAA+CGG | - | chr2_3:60845887-60845906 | None:intergenic | 25.0% |
| ! | ACATTATGAAGAGATCAAAA+GGG | - | chr2_3:60845991-60846010 | None:intergenic | 25.0% |
| ! | TAAATGCAAAATAGCATATG+AGG | - | chr2_3:60846030-60846049 | None:intergenic | 25.0% |
| !!! | AAGTTTTTATTTAGAGAAGC+TGG | + | chr2_3:60846230-60846249 | Msa0303630:intron | 25.0% |
| ! | TCAAATTAGCTCATAGATTA+AGG | - | chr2_3:60846425-60846444 | None:intergenic | 25.0% |
| ! | AGAATGCATAAACTACAAAA+GGG | - | chr2_3:60846652-60846671 | None:intergenic | 25.0% |
| ! | TAGAATGCATAAACTACAAA+AGG | - | chr2_3:60846653-60846672 | None:intergenic | 25.0% |
| !! | GTTTTCTATGTTAATCTAGT+TGG | - | chr2_3:60846866-60846885 | None:intergenic | 25.0% |
| ! | CATGTCATAATTAAACAATC+TGG | - | chr2_3:60846984-60847003 | None:intergenic | 25.0% |
| TCCAAATCCAAAGCAAATTA+GGG | + | chr2_3:60843582-60843601 | Msa0303630:five_prime_UTR | 30.0% | |
| ATGACAAAACGAAAATACCT+TGG | - | chr2_3:60843685-60843704 | None:intergenic | 30.0% | |
| !! | GTTTTGTCATTGTGCTTTTT+AGG | + | chr2_3:60843695-60843714 | Msa0303630:intron | 30.0% |
| ! | ATACTAACCAGAGTATTTGT+AGG | - | chr2_3:60843931-60843950 | None:intergenic | 30.0% |
| GAATTAGTGGTTGGAAAATT+CGG | + | chr2_3:60844673-60844692 | Msa0303630:intron | 30.0% | |
| !! | GTTGTTTCAGTGCATTTTAA+TGG | + | chr2_3:60844890-60844909 | Msa0303630:intron | 30.0% |
| !! | CATTTTAATGGAAATACTGC+CGG | + | chr2_3:60844902-60844921 | Msa0303630:intron | 30.0% |
| GGAAAATTCGAACAAAGAAA+AGG | - | chr2_3:60845004-60845023 | None:intergenic | 30.0% | |
| ! | TGAAATTTACTTGTTACGCT+TGG | + | chr2_3:60845336-60845355 | Msa0303630:intron | 30.0% |
| TTTGAATATCAGATGTCGAA+AGG | - | chr2_3:60845404-60845423 | None:intergenic | 30.0% | |
| !! | TTTTGTTTATTGTGTGAACC+TGG | + | chr2_3:60845463-60845482 | Msa0303630:intron | 30.0% |
| GGATTCATCTTATATGTTAG+AGG | - | chr2_3:60845601-60845620 | None:intergenic | 30.0% | |
| ATATAAGATGAATCCCTATG+TGG | + | chr2_3:60845606-60845625 | Msa0303630:intron | 30.0% | |
| TATAAGATGAATCCCTATGT+GGG | + | chr2_3:60845607-60845626 | Msa0303630:intron | 30.0% | |
| ! | TGAAATTTACTTGTTACGCT+TGG | + | chr2_3:60845336-60845355 | Msa0303630:intron | 30.0% |
| TTGAATTATAAGAGGTCACT+AGG | - | chr2_3:60845707-60845726 | None:intergenic | 30.0% | |
| ATTTACACAGATAAATCGCA+TGG | - | chr2_3:60845814-60845833 | None:intergenic | 30.0% | |
| ! | ATTTTGTACCTATATGGACT+AGG | + | chr2_3:60845841-60845860 | Msa0303630:intron | 30.0% |
| ATATAAGAAGAATCCCTATG+TGG | + | chr2_3:60845892-60845911 | Msa0303630:intron | 30.0% | |
| TATAAGAAGAATCCCTATGT+GGG | + | chr2_3:60845893-60845912 | Msa0303630:intron | 30.0% | |
| ! | TGAAATATACTTGTTACGCT+TGG | + | chr2_3:60845925-60845944 | Msa0303630:intron | 30.0% |
| GACATTATGAAGAGATCAAA+AGG | - | chr2_3:60845992-60846011 | None:intergenic | 30.0% | |
| ATTTCATTGAAGAAACCCAA+AGG | - | chr2_3:60846145-60846164 | None:intergenic | 30.0% | |
| ! | TGAAATTTACTTGTTACGCT+TGG | + | chr2_3:60845336-60845355 | Msa0303630:intron | 30.0% |
| ! | AGTCATTTGCTGCAAAATAA+AGG | - | chr2_3:60846261-60846280 | None:intergenic | 30.0% |
| AATGCATAAACTACAAAAGG+GGG | - | chr2_3:60846650-60846669 | None:intergenic | 30.0% | |
| GAATGCATAAACTACAAAAG+GGG | - | chr2_3:60846651-60846670 | None:intergenic | 30.0% | |
| !! | AACTCCAGTATTCTAGAATA+GGG | - | chr2_3:60846679-60846698 | None:intergenic | 30.0% |
| AAACTATAGTCTATGCCATT+TGG | - | chr2_3:60846814-60846833 | None:intergenic | 30.0% | |
| TTTCCTCTCCTTCAATTAAT+CGG | + | chr2_3:60846831-60846850 | Msa0303630:intron | 30.0% | |
| AATTAGGTCCGATTAATTGA+AGG | - | chr2_3:60846842-60846861 | None:intergenic | 30.0% | |
| TGTTAATCTAGTTGGCAATT+AGG | - | chr2_3:60846858-60846877 | None:intergenic | 30.0% | |
| ! | CCTGTTCAACATTGATTAAA+TGG | - | chr2_3:60846921-60846940 | None:intergenic | 30.0% |
| CCATTTAATCAATGTTGAAC+AGG | + | chr2_3:60846918-60846937 | Msa0303630:three_prime_UTR | 30.0% | |
| TCATAATTAAACAATCTGGC+CGG | - | chr2_3:60846980-60846999 | None:intergenic | 30.0% | |
| !! | ACCCTAATTTGCTTTGGATT+TGG | - | chr2_3:60843586-60843605 | None:intergenic | 35.0% |
| !! | TTGGAAACCCTAATTTGCTT+TGG | - | chr2_3:60843592-60843611 | None:intergenic | 35.0% |
| ! | AATACCTTGGATTGTTGTTG+AGG | - | chr2_3:60843672-60843691 | None:intergenic | 35.0% |
| GTTGAAGAAGAAGAAGAAGA+TGG | + | chr2_3:60843776-60843795 | Msa0303630:exon | 35.0% | |
| !!! | GAAGAGGAACAACTCTTTTT+TGG | + | chr2_3:60843833-60843852 | Msa0303630:CDS | 35.0% |
| CTTAACTCCTACAAATACTC+TGG | + | chr2_3:60843921-60843940 | Msa0303630:CDS | 35.0% | |
| TGTTAATGCTATGTGTCTGA+TGG | + | chr2_3:60844358-60844377 | Msa0303630:intron | 35.0% | |
| CTGTTATGAAGAAAGAGTTC+AGG | + | chr2_3:60844566-60844585 | Msa0303630:CDS | 35.0% | |
| TTATGAAGAAAGAGTTCAGG+AGG | + | chr2_3:60844569-60844588 | Msa0303630:CDS | 35.0% | |
| TCCACACAAAGAACAAGAAT+CGG | - | chr2_3:60844655-60844674 | None:intergenic | 35.0% | |
| TGTTCTTTGTGTGGAATTAG+TGG | + | chr2_3:60844660-60844679 | Msa0303630:intron | 35.0% | |
| ATCTAGTCAAATCTTCTGCT+AGG | + | chr2_3:60844773-60844792 | Msa0303630:intron | 35.0% | |
| ATAAAACATTTGGAAACGCG+TGG | + | chr2_3:60844937-60844956 | Msa0303630:intron | 35.0% | |
| ACAAAGAAAAGGGGTTCAAA+TGG | - | chr2_3:60844993-60845012 | None:intergenic | 35.0% | |
| TGTAAGAAGGATCCATTTGT+TGG | + | chr2_3:60845046-60845065 | Msa0303630:intron | 35.0% | |
| GTAAGAAGGATCCATTTGTT+GGG | + | chr2_3:60845047-60845066 | Msa0303630:intron | 35.0% | |
| CACTGAATAAACCCAACAAA+TGG | - | chr2_3:60845061-60845080 | None:intergenic | 35.0% | |
| ! | AAAGAGAGGCACACTATTAA+CGG | - | chr2_3:60845170-60845189 | None:intergenic | 35.0% |
| ! | TAATTTGAATGGGAGCGTAA+GGG | - | chr2_3:60845213-60845232 | None:intergenic | 35.0% |
| ! | ATAATTTGAATGGGAGCGTA+AGG | - | chr2_3:60845214-60845233 | None:intergenic | 35.0% |
| TTGGGTAACACTAGTTGAAT+CGG | - | chr2_3:60845265-60845284 | None:intergenic | 35.0% | |
| ATTCAACTAGTGTTACCCAA+CGG | + | chr2_3:60845265-60845284 | Msa0303630:intron | 35.0% | |
| TCATTGAAGAAACCCACATA+GGG | - | chr2_3:60845319-60845338 | None:intergenic | 35.0% | |
| TTCATTGAAGAAACCCACAT+AGG | - | chr2_3:60845320-60845339 | None:intergenic | 35.0% | |
| !! | ATACCATTTTTCTGGTGATC+TGG | + | chr2_3:60845487-60845506 | Msa0303630:intron | 35.0% |
| ACAGAAATCACATGGCAATT+AGG | - | chr2_3:60845517-60845536 | None:intergenic | 35.0% | |
| TCATTGAAGAAACCCACATA+GGG | - | chr2_3:60845319-60845338 | None:intergenic | 35.0% | |
| TTCATTGAAGAAACCCACAT+AGG | - | chr2_3:60845320-60845339 | None:intergenic | 35.0% | |
| TTTATTGTGCGAACCTTATC+TGG | + | chr2_3:60845765-60845784 | Msa0303630:intron | 35.0% | |
| GAAAACTAGATCACCAGATA+AGG | - | chr2_3:60845781-60845800 | None:intergenic | 35.0% | |
| TAAATCGCATGGTAGCAATT+AGG | - | chr2_3:60845803-60845822 | None:intergenic | 35.0% | |
| TCATTGAAGAAACCCACATA+GGG | - | chr2_3:60845319-60845338 | None:intergenic | 35.0% | |
| TTCATTGAAGAAACCCACAT+AGG | - | chr2_3:60845320-60845339 | None:intergenic | 35.0% | |
| !! | TAATTTGTTGGGCAGCATTT+GGG | - | chr2_3:60846286-60846305 | None:intergenic | 35.0% |
| !! | ATAATTTGTTGGGCAGCATT+TGG | - | chr2_3:60846287-60846306 | None:intergenic | 35.0% |
| ! | TGCTGCCCAACAAATTATTT+TGG | + | chr2_3:60846289-60846308 | Msa0303630:intron | 35.0% |
| ATGCATAAACTACAAAAGGG+GGG | - | chr2_3:60846649-60846668 | None:intergenic | 35.0% | |
| !! | AGAACCCTATTCTAGAATAC+TGG | + | chr2_3:60846672-60846691 | Msa0303630:three_prime_UTR | 35.0% |
| !! | GAACTCCAGTATTCTAGAAT+AGG | - | chr2_3:60846680-60846699 | None:intergenic | 35.0% |
| TAGAATACTGGAGTTCAGTT+TGG | + | chr2_3:60846684-60846703 | Msa0303630:three_prime_UTR | 35.0% | |
| ! | TTGCGTTTTCAATACAAGAC+TGG | + | chr2_3:60846718-60846737 | Msa0303630:three_prime_UTR | 35.0% |
| GCCAATTTGAAAGGTTTGAT+GGG | + | chr2_3:60846940-60846959 | Msa0303630:three_prime_UTR | 35.0% | |
| TCCCATCAAACCTTTCAAAT+TGG | - | chr2_3:60846944-60846963 | None:intergenic | 35.0% | |
| GAGTGAGATTTGAGAAGAAG+AGG | - | chr2_3:60843648-60843667 | None:intergenic | 40.0% | |
| CTTGAGCATATCTACTTGCT+TGG | - | chr2_3:60844251-60844270 | None:intergenic | 40.0% | |
| ACTGTAACTATTCAGTCTGC+TGG | + | chr2_3:60844469-60844488 | Msa0303630:CDS | 40.0% | |
| CAAAGATCAGTCTGTGTTGT+TGG | + | chr2_3:60844492-60844511 | Msa0303630:CDS | 40.0% | |
| GATTTGTGAAGAAAAGCAGC+AGG | - | chr2_3:60844547-60844566 | None:intergenic | 40.0% | |
| TCCGATTCTTGTTCTTTGTG+TGG | + | chr2_3:60844651-60844670 | Msa0303630:intron | 40.0% | |
| CTTTGTGTGGAATTAGTGGT+TGG | + | chr2_3:60844664-60844683 | Msa0303630:intron | 40.0% | |
| GTTGGAAAATTCGGCTAAGT+TGG | + | chr2_3:60844682-60844701 | Msa0303630:intron | 40.0% | |
| TGAGCCTCTAACATGTAAGA+AGG | + | chr2_3:60845033-60845052 | Msa0303630:intron | 40.0% | |
| GGATCCTTCTTACATGTTAG+AGG | - | chr2_3:60845040-60845059 | None:intergenic | 40.0% | |
| GTTAATAGCTCATCACCGTT+GGG | - | chr2_3:60845283-60845302 | None:intergenic | 40.0% | |
| TGTTAATAGCTCATCACCGT+TGG | - | chr2_3:60845284-60845303 | None:intergenic | 40.0% | |
| ACGTAAGAAGAATCCCTATG+TGG | + | chr2_3:60845303-60845322 | Msa0303630:intron | 40.0% | |
| CGTAAGAAGAATCCCTATGT+GGG | + | chr2_3:60845304-60845323 | Msa0303630:intron | 40.0% | |
| !! | AACCTGGCATACCATTTTTC+TGG | + | chr2_3:60845479-60845498 | Msa0303630:intron | 40.0% |
| CAACCAGATCACCAGAAAAA+TGG | - | chr2_3:60845493-60845512 | None:intergenic | 40.0% | |
| ACACCAAATCTTACTTGCAG+AGG | - | chr2_3:60845561-60845580 | None:intergenic | 40.0% | |
| TTCAATCGTATTAGCAGTGG+TGG | - | chr2_3:60846081-60846100 | None:intergenic | 40.0% | |
| GCATTCAATCGTATTAGCAG+TGG | - | chr2_3:60846084-60846103 | None:intergenic | 40.0% | |
| TACGATTGAATGCTTCCCAT+CGG | + | chr2_3:60846091-60846110 | Msa0303630:intron | 40.0% | |
| TGAGCTGTTAACACGTAAGA+AGG | + | chr2_3:60846117-60846136 | Msa0303630:intron | 40.0% | |
| AACACGTAAGAAGGTTCCTT+TGG | + | chr2_3:60846126-60846145 | Msa0303630:intron | 40.0% | |
| ACACGTAAGAAGGTTCCTTT+GGG | + | chr2_3:60846127-60846146 | Msa0303630:intron | 40.0% | |
| TAGTAGTTATCTGCAACCTG+AGG | - | chr2_3:60846468-60846487 | None:intergenic | 40.0% | |
| CTACAGACCTGATCTTAAGA+AGG | + | chr2_3:60846485-60846504 | Msa0303630:CDS | 40.0% | |
| ! | CAAGGTTGAGTGCTGTTAAT+AGG | + | chr2_3:60846517-60846536 | Msa0303630:CDS | 40.0% |
| TGTGATGTTGAGTGTCAACT+AGG | - | chr2_3:60846892-60846911 | None:intergenic | 40.0% | |
| GTTGAACAGGCCAATTTGAA+AGG | + | chr2_3:60846931-60846950 | Msa0303630:three_prime_UTR | 40.0% | |
| GGCCAATTTGAAAGGTTTGA+TGG | + | chr2_3:60846939-60846958 | Msa0303630:three_prime_UTR | 40.0% | |
| ! | ATGGGAATCAGATGCTTTTC+CGG | + | chr2_3:60846958-60846977 | Msa0303630:three_prime_UTR | 40.0% |
| CTCTCCTCAACAACAATCCA+AGG | + | chr2_3:60843665-60843684 | Msa0303630:five_prime_UTR | 45.0% | |
| AAGAAGATGGCAACAGTACC+TGG | + | chr2_3:60843789-60843808 | Msa0303630:exon | 45.0% | |
| AGTACCTGGACCACTTGTTT+GGG | + | chr2_3:60843803-60843822 | Msa0303630:CDS | 45.0% | |
| TTCACGATCTCCCAAACAAG+TGG | - | chr2_3:60843816-60843835 | None:intergenic | 45.0% | |
| TTGTTTGGGAGATCGTGAAG+AGG | + | chr2_3:60843817-60843836 | Msa0303630:CDS | 45.0% | |
| !!! | CTTGTTTTGCTTCCTTGGCT+TGG | - | chr2_3:60844524-60844543 | None:intergenic | 45.0% |
| GAAGAAAGAGTTCAGGAGGA+TGG | + | chr2_3:60844573-60844592 | Msa0303630:CDS | 45.0% | |
| ACTATTAACGGTGCAGGCAA+AGG | - | chr2_3:60845158-60845177 | None:intergenic | 45.0% | |
| CACCAGAAAAATGGTATGCC+AGG | - | chr2_3:60845484-60845503 | None:intergenic | 45.0% | |
| GCACCTCTGCAAGTAAGATT+TGG | + | chr2_3:60845555-60845574 | Msa0303630:intron | 45.0% | |
| GGGGAAAACCTAGTCCATAT+AGG | - | chr2_3:60845852-60845871 | None:intergenic | 45.0% | |
| GTTAACAGCTCATCACCGAT+GGG | - | chr2_3:60846109-60846128 | None:intergenic | 45.0% | |
| TGTTAACAGCTCATCACCGA+TGG | - | chr2_3:60846110-60846129 | None:intergenic | 45.0% | |
| CAGACCTGATCTTAAGAAGG+CGG | + | chr2_3:60846488-60846507 | Msa0303630:CDS | 45.0% | |
| AAGAAGAGAAACAGGCATGC+AGG | + | chr2_3:60846567-60846586 | Msa0303630:CDS | 45.0% | |
| GGTCCGATTAATTGAAGGAG+AGG | - | chr2_3:60846837-60846856 | None:intergenic | 45.0% | |
| CAGTACCTGGACCACTTGTT+TGG | + | chr2_3:60843802-60843821 | Msa0303630:CDS | 50.0% | |
| ATCTCCCAAACAAGTGGTCC+AGG | - | chr2_3:60843810-60843829 | None:intergenic | 50.0% | |
| !!! | GTTTTGCTTCCTTGGCTTGG+TGG | - | chr2_3:60844521-60844540 | None:intergenic | 50.0% |
| !!! | GCAGGCTTGTTTTGCTTCCT+TGG | - | chr2_3:60844529-60844548 | None:intergenic | 50.0% |
| AGAGTTCAGGAGGATGGCTA+AGG | + | chr2_3:60844579-60844598 | Msa0303630:CDS | 50.0% | |
| GGCTAAGGCTGTGCAAAATC+AGG | + | chr2_3:60844594-60844613 | Msa0303630:CDS | 50.0% | |
| GTTAGAGGCTCATCACAGCA+AGG | - | chr2_3:60845025-60845044 | None:intergenic | 50.0% | |
| TGCAGGCAAAGGAGATCAGA+AGG | - | chr2_3:60845147-60845166 | None:intergenic | 50.0% | |
| AGGCACACTATTAACGGTGC+AGG | - | chr2_3:60845164-60845183 | None:intergenic | 50.0% | |
| TTAGAGGCTCATCACTGCTG+GGG | - | chr2_3:60845585-60845604 | None:intergenic | 50.0% | |
| GTTAGAGGCTCATCACTGCT+GGG | - | chr2_3:60845586-60845605 | None:intergenic | 50.0% | |
| TGTTAGAGGCTCATCACTGC+TGG | - | chr2_3:60845587-60845606 | None:intergenic | 50.0% | |
| TTAACGGCTCATCACTGCTG+GGG | - | chr2_3:60845871-60845890 | None:intergenic | 50.0% | |
| GTTAACGGCTCATCACTGCT+GGG | - | chr2_3:60845872-60845891 | None:intergenic | 50.0% | |
| TGTTAACGGCTCATCACTGC+TGG | - | chr2_3:60845873-60845892 | None:intergenic | 50.0% | |
| AGAGCCGCCTTCTTAAGATC+AGG | - | chr2_3:60846495-60846514 | None:intergenic | 50.0% | |
| TTAAGAAGGCGGCTCTTGCA+AGG | + | chr2_3:60846499-60846518 | Msa0303630:CDS | 50.0% | |
| AGCCTCAGAGTTGCAAAGTC+TGG | + | chr2_3:60846540-60846559 | Msa0303630:CDS | 50.0% | |
| CTGGCGCTAAGAAGAGAAAC+AGG | + | chr2_3:60846559-60846578 | Msa0303630:CDS | 50.0% | |
| TGTTGGCAACCACCAAGCCA+AGG | + | chr2_3:60844509-60844528 | Msa0303630:CDS | 55.0% | |
| TTGCGTGTGTGATGTGCCTC+AGG | + | chr2_3:60846449-60846468 | Msa0303630:intron | 55.0% | |
| CGCCAGACTTTGCAACTCTG+AGG | - | chr2_3:60846545-60846564 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 60843582 | 60847007 | 60843582 | ID=Msa0303630;Name=Msa0303630 |
| chr2_3 | mRNA | 60843582 | 60847007 | 60843582 | ID=Msa0303630-mRNA-1;Parent=Msa0303630;Name=Msa0303630-mRNA-1;_AED=0.02;_eAED=0.02;_QI=124|1|1|1|0.5|0.4|5|378|145 |
| chr2_3 | exon | 60843582 | 60843686 | 60843582 | ID=Msa0303630-mRNA-1:exon:19886;Parent=Msa0303630-mRNA-1 |
| chr2_3 | exon | 60843776 | 60843942 | 60843776 | ID=Msa0303630-mRNA-1:exon:19887;Parent=Msa0303630-mRNA-1 |
| chr2_3 | exon | 60844452 | 60844615 | 60844452 | ID=Msa0303630-mRNA-1:exon:19888;Parent=Msa0303630-mRNA-1 |
| chr2_3 | exon | 60846471 | 60846845 | 60846471 | ID=Msa0303630-mRNA-1:exon:19889;Parent=Msa0303630-mRNA-1 |
| chr2_3 | exon | 60846879 | 60847007 | 60846879 | ID=Msa0303630-mRNA-1:exon:19890;Parent=Msa0303630-mRNA-1 |
| chr2_3 | five_prime_UTR | 60843582 | 60843686 | 60843582 | ID=Msa0303630-mRNA-1:five_prime_utr;Parent=Msa0303630-mRNA-1 |
| chr2_3 | five_prime_UTR | 60843776 | 60843794 | 60843776 | ID=Msa0303630-mRNA-1:five_prime_utr;Parent=Msa0303630-mRNA-1 |
| chr2_3 | CDS | 60843795 | 60843942 | 60843795 | ID=Msa0303630-mRNA-1:cds;Parent=Msa0303630-mRNA-1 |
| chr2_3 | CDS | 60844452 | 60844615 | 60844452 | ID=Msa0303630-mRNA-1:cds;Parent=Msa0303630-mRNA-1 |
| chr2_3 | CDS | 60846471 | 60846596 | 60846471 | ID=Msa0303630-mRNA-1:cds;Parent=Msa0303630-mRNA-1 |
| chr2_3 | three_prime_UTR | 60846597 | 60846845 | 60846597 | ID=Msa0303630-mRNA-1:three_prime_utr;Parent=Msa0303630-mRNA-1 |
| chr2_3 | three_prime_UTR | 60846879 | 60847007 | 60846879 | ID=Msa0303630-mRNA-1:three_prime_utr;Parent=Msa0303630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
