Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192750 | TYH05148.1 | 98.837 | 86 | 1 | 0 | 1 | 86 | 49 | 134 | 4.45e-57 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192750 | sp|Q9M2F1|RS272_ARATH | 95.349 | 86 | 4 | 0 | 1 | 86 | 1 | 86 | 4.55e-58 | 175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192750 | I3S5S4 | 100.000 | 86 | 0 | 0 | 1 | 86 | 1 | 86 | 5.79e-57 | 179 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027590 | Msa0192750 | 0.851261 | 9.960635e-61 | -8.615850e-47 |
| Msa0042480 | Msa0192750 | 0.815977 | 7.010966e-52 | -8.615850e-47 |
| Msa0070840 | Msa0192750 | 0.805750 | 1.147980e-49 | -8.615850e-47 |
| Msa0072570 | Msa0192750 | 0.814466 | 1.519103e-51 | -8.615850e-47 |
| Msa0075350 | Msa0192750 | 0.865341 | 6.333614e-65 | -8.615850e-47 |
| Msa0079590 | Msa0192750 | 0.821959 | 3.058799e-53 | -8.615850e-47 |
| Msa0087910 | Msa0192750 | 0.811879 | 5.614551e-51 | -8.615850e-47 |
| Msa0114570 | Msa0192750 | 0.802727 | 4.889589e-49 | -8.615850e-47 |
| Msa0134580 | Msa0192750 | 0.811044 | 8.525062e-51 | -8.615850e-47 |
| Msa0181490 | Msa0192750 | 0.802614 | 5.160120e-49 | -8.615850e-47 |
| Msa0187810 | Msa0192750 | 0.807064 | 6.067007e-50 | -8.615850e-47 |
| Msa0191450 | Msa0192750 | 0.833638 | 4.753028e-56 | -8.615850e-47 |
| Msa0191550 | Msa0192750 | 0.826364 | 2.825607e-54 | -8.615850e-47 |
| Msa0192750 | Msa0194940 | 0.813547 | 2.421564e-51 | -8.615850e-47 |
| Msa0192750 | Msa0210330 | 0.821448 | 4.016827e-53 | -8.615850e-47 |
| Msa0192750 | Msa0210360 | 0.832660 | 8.328852e-56 | -8.615850e-47 |
| Msa0192750 | Msa0222730 | 0.825180 | 5.395336e-54 | -8.615850e-47 |
| Msa0192750 | Msa0229150 | 0.852654 | 4.006964e-61 | -8.615850e-47 |
| Msa0192750 | Msa0235050 | 0.963934 | 1.070247e-122 | -8.615850e-47 |
| Msa0192750 | Msa0281330 | 0.810444 | 1.149120e-50 | -8.615850e-47 |
| Msa0192750 | Msa0281370 | 0.817753 | 2.800458e-52 | -8.615850e-47 |
| Msa0192750 | Msa0297830 | 0.821721 | 3.472513e-53 | -8.615850e-47 |
| Msa0192750 | Msa0298870 | 0.840549 | 8.132931e-58 | -8.615850e-47 |
| Msa0192750 | Msa0301220 | 0.842491 | 2.503391e-58 | -8.615850e-47 |
| Msa0192750 | Msa0303630 | 0.830230 | 3.300900e-55 | -8.615850e-47 |
| Msa0192750 | Msa0315430 | 0.804530 | 2.067066e-49 | -8.615850e-47 |
| Msa0192750 | Msa0335840 | 0.829669 | 4.524343e-55 | -8.615850e-47 |
| Msa0192750 | Msa0369410 | 0.844256 | 8.463558e-59 | -8.615850e-47 |
| Msa0192750 | Msa0426090 | 0.819253 | 1.279913e-52 | -8.615850e-47 |
| Msa0192750 | Msa0426250 | 0.807793 | 4.249182e-50 | -8.615850e-47 |
| Msa0192750 | Msa0463520 | 0.830949 | 2.200891e-55 | -8.615850e-47 |
| Msa0192750 | Msa0472480 | 0.816893 | 4.373466e-52 | -8.615850e-47 |
| Msa0192750 | Msa0481520 | 0.835613 | 1.515267e-56 | -8.615850e-47 |
| Msa0192750 | Msa0481850 | 0.872854 | 2.308953e-67 | -8.615850e-47 |
| Msa0192750 | Msa0483110 | 0.805559 | 1.259274e-49 | -8.615850e-47 |
| Msa0192750 | Msa0517480 | 0.800921 | 1.148451e-48 | -8.615850e-47 |
| Msa0192750 | Msa0540480 | 0.802132 | 6.486592e-49 | -8.615850e-47 |
| Msa0192750 | Msa0550420 | 0.851482 | 8.622358e-61 | -8.615850e-47 |
| Msa0192750 | Msa0597240 | 0.800335 | 1.512871e-48 | -8.615850e-47 |
| Msa0192750 | Msa0605890 | 0.836913 | 7.081325e-57 | -8.615850e-47 |
| Msa0192750 | Msa0622230 | 0.807818 | 4.197115e-50 | -8.615850e-47 |
| Msa0192750 | Msa0623370 | 0.802829 | 4.658119e-49 | -8.615850e-47 |
| Msa0192750 | Msa0705800 | 0.874684 | 5.571301e-68 | -8.615850e-47 |
| Msa0192750 | Msa0712610 | 0.860243 | 2.365845e-63 | -8.615850e-47 |
| Msa0192750 | Msa0752910 | 0.814935 | 1.195463e-51 | -8.615850e-47 |
| Msa0192750 | Msa0781080 | 0.814244 | 1.700517e-51 | -8.615850e-47 |
| Msa0192750 | Msa0788380 | 0.820822 | 5.598014e-53 | -8.615850e-47 |
| Msa0192750 | Msa0822580 | 0.810939 | 8.981337e-51 | -8.615850e-47 |
| Msa0192750 | Msa0827380 | 0.801875 | 7.325304e-49 | -8.615850e-47 |
| Msa0192750 | Msa0902220 | 0.807382 | 5.193636e-50 | -8.615850e-47 |
| Msa0192750 | Msa0915540 | 0.811103 | 8.276926e-51 | -8.615850e-47 |
| Msa0192750 | Msa0927910 | 0.812430 | 4.255889e-51 | -8.615850e-47 |
| Msa0192750 | Msa0929700 | 0.812342 | 4.448842e-51 | -8.615850e-47 |
| Msa0192750 | Msa1010310 | 0.821954 | 3.067028e-53 | -8.615850e-47 |
| Msa0192750 | Msa1037290 | 0.853295 | 2.626876e-61 | -8.615850e-47 |
| Msa0192750 | Msa1040160 | 0.851661 | 7.673536e-61 | -8.615850e-47 |
| Msa0192750 | Msa1041680 | 0.811108 | 8.256141e-51 | -8.615850e-47 |
| Msa0192750 | Msa1042100 | 0.815423 | 9.316782e-52 | -8.615850e-47 |
| Msa0192750 | Msa1080350 | 0.870324 | 1.590648e-66 | -8.615850e-47 |
| Msa0192750 | Msa1082170 | 0.816843 | 4.485899e-52 | -8.615850e-47 |
| Msa0192750 | Msa1083370 | 0.854355 | 1.300674e-61 | -8.615850e-47 |
| Msa0192750 | Msa1096900 | 0.822340 | 2.496595e-53 | -8.615850e-47 |
| Msa0192750 | Msa1124850 | 0.811859 | 5.671565e-51 | -8.615850e-47 |
| Msa0192750 | Msa1125860 | 0.869053 | 4.129601e-66 | -8.615850e-47 |
| Msa0192750 | Msa1126060 | 0.871731 | 5.467091e-67 | -8.615850e-47 |
| Msa0192750 | Msa1126520 | 0.870035 | 1.976938e-66 | -8.615850e-47 |
| Msa0192750 | Msa1164150 | 0.852598 | 4.155529e-61 | -8.615850e-47 |
| Msa0192750 | Msa1165640 | 0.810947 | 8.947560e-51 | -8.615850e-47 |
| Msa0192750 | Msa1166570 | 0.813930 | 1.994271e-51 | -8.615850e-47 |
| Msa0192750 | Msa1167550 | 0.848897 | 4.573763e-60 | -8.615850e-47 |
| Msa0192750 | Msa1186030 | 0.880915 | 3.704245e-70 | -8.615850e-47 |
| Msa0192750 | Msa1218170 | 0.800163 | 1.639296e-48 | -8.615850e-47 |
| Msa0192750 | Msa1240270 | 0.880061 | 7.485611e-70 | -8.615850e-47 |
| Msa0192750 | Msa1263620 | 0.800166 | 1.637363e-48 | -8.615850e-47 |
| Msa0192750 | Msa1301640 | 0.820544 | 6.485320e-53 | -8.615850e-47 |
| Msa0192750 | Msa1311400 | 0.815944 | 7.129950e-52 | -8.615850e-47 |
| Msa0192750 | Msa1356790 | 0.868755 | 5.159415e-66 | -8.615850e-47 |
| Msa0192750 | Msa1368920 | 0.853064 | 3.058221e-61 | -8.615850e-47 |
| Msa0192750 | Msa1392590 | 0.809149 | 2.181906e-50 | -8.615850e-47 |
| Msa0192750 | Msa1406080 | 0.811327 | 7.400203e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192750 | MtrunA17_Chr2g0283551 | 100.000 | 86 | 0 | 0 | 1 | 86 | 1 | 86 | 1.11e-60 | 179 |
| Msa0192750 | MtrunA17_Chr2g0291901 | 98.837 | 86 | 1 | 0 | 1 | 86 | 1 | 86 | 3.27e-60 | 177 |
| Msa0192750 | MtrunA17_Chr1g0210581 | 98.837 | 86 | 1 | 0 | 1 | 86 | 1 | 86 | 3.27e-60 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192750 | AT3G61110.1 | 95.349 | 86 | 4 | 0 | 1 | 86 | 1 | 86 | 4.63e-59 | 175 |
| Msa0192750 | AT2G45710.1 | 94.048 | 84 | 5 | 0 | 1 | 84 | 1 | 84 | 3.86e-56 | 167 |
| Msa0192750 | AT5G47930.1 | 95.238 | 84 | 4 | 0 | 1 | 84 | 1 | 84 | 1.13e-55 | 166 |
| Msa0192750 | AT3G61111.1 | 82.558 | 86 | 15 | 0 | 1 | 86 | 1 | 86 | 4.94e-49 | 150 |
| Msa0192750 | AT3G61111.2 | 80.952 | 42 | 8 | 0 | 1 | 42 | 1 | 42 | 1.06e-18 | 73.6 |
Find 37 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATGCTAGGTTAAAGTTT+TGG | 0.280121 | 2_1:+8580482 | None:intergenic |
| TCTATTTACTGTTGTGCATC+TGG | 0.299569 | 2_1:-8580461 | Msa0192750:three_prime_UTR |
| GTTGCAGAGTTGTGGTTGTT+AGG | 0.336511 | 2_1:-8580592 | Msa0192750:three_prime_UTR |
| TAGGAAGAAGGGAGACTAAA+TGG | 0.336934 | 2_1:-8580639 | Msa0192750:exon |
| TAACAGAAGGATGCTCCTTT+AGG | 0.360674 | 2_1:-8580658 | Msa0192750:CDS |
| TTTCTCTTCTCAAGCTCAGC+TGG | 0.378351 | 2_1:+8581189 | None:intergenic |
| ACCGTCTTGTGCCAGCCAAC+AGG | 0.416778 | 2_1:-8580695 | Msa0192750:CDS |
| TGTGGTTGTTAGGCTTAAGA+TGG | 0.436847 | 2_1:-8580582 | Msa0192750:three_prime_UTR |
| TTAGTCTCCCTTCTTCCTAA+AGG | 0.438236 | 2_1:+8580643 | None:intergenic |
| CTCTTCTCAAGCTCAGCTGG+TGG | 0.449604 | 2_1:+8581192 | None:intergenic |
| TGTCATCTTTACTTTGTCCA+TGG | 0.464001 | 2_1:-8580614 | Msa0192750:three_prime_UTR |
| TTGCACGGCCACCTGTTGGC+TGG | 0.466909 | 2_1:+8580684 | None:intergenic |
| CAACCACAACTCTGCAACCA+TGG | 0.471278 | 2_1:+8580597 | None:intergenic |
| AGCCAACAGGTGGCCGTGCA+AGG | 0.485723 | 2_1:-8580682 | Msa0192750:CDS |
| TCTTCTCAAGCTCAGCTGGT+GGG | 0.492805 | 2_1:+8581193 | None:intergenic |
| AGGATGCTCCTTTAGGAAGA+AGG | 0.507022 | 2_1:-8580651 | Msa0192750:CDS |
| GGATGCTCCTTTAGGAAGAA+GGG | 0.515173 | 2_1:-8580650 | Msa0192750:CDS |
| CTTACATATTGAAACAACCT+TGG | 0.524068 | 2_1:+8581012 | None:intergenic |
| TGTCCATGGTTGCAGAGTTG+TGG | 0.535567 | 2_1:-8580600 | Msa0192750:three_prime_UTR |
| AGCCTTGCACGGCCACCTGT+TGG | 0.536283 | 2_1:+8580680 | None:intergenic |
| CGTGTAATCTGTCTTGCGAT+TGG | 0.550265 | 2_1:-8580343 | Msa0192750:three_prime_UTR |
| TTGCAGGATGTAAAATGCCA+AGG | 0.553924 | 2_1:-8581029 | Msa0192750:intron |
| ATCCTTCTGTTAGCCTTGCA+CGG | 0.562687 | 2_1:+8580669 | None:intergenic |
| CAACAGTAAATAGAAATGCT+AGG | 0.572412 | 2_1:+8580470 | None:intergenic |
| ACCTGTTGGCTGGCACAAGA+CGG | 0.579670 | 2_1:+8580694 | None:intergenic |
| TAGCCACTCTCAAACCGTTG+TGG | 0.599496 | 2_1:-8580735 | Msa0192750:CDS |
| CAGGGCACTGACCATGTTGG+CGG | 0.602656 | 2_1:+8581471 | None:intergenic |
| GTCTTGTGCCAGCCAACAGG+TGG | 0.604328 | 2_1:-8580692 | Msa0192750:CDS |
| ACCATGTTGGCGGAAAATGT+TGG | 0.615242 | 2_1:+8581481 | None:intergenic |
| GGCCGTGCAAGGCTAACAGA+AGG | 0.622759 | 2_1:-8580671 | Msa0192750:CDS |
| TCTCAAACCGTTGTGGTGTG+CGG | 0.635679 | 2_1:-8580728 | Msa0192750:CDS |
| GAACAGGGCACTGACCATGT+TGG | 0.640363 | 2_1:+8581468 | None:intergenic |
| ACACCACAACGGTTTGAGAG+TGG | 0.647039 | 2_1:+8580732 | None:intergenic |
| CGGAAAATGTTGGAAAACAG+AGG | 0.656697 | 2_1:+8581491 | None:intergenic |
| TTGAGAGTGGCTAAAGACAG+TGG | 0.660753 | 2_1:+8580745 | None:intergenic |
| TCTTGCGATTGGTGTGTCCG+AGG | 0.681893 | 2_1:-8580332 | None:intergenic |
| ACAGTTACCGCACACCACAA+CGG | 0.704309 | 2_1:+8580721 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTTTTATTGTTTTTTT+TGG | - | chr2_1:8580474-8580493 | Msa0192750:three_prime_UTR | 10.0% |
| !!! | TTGATTTTTATTGTTTTTTT+TGG | - | chr2_1:8580474-8580493 | Msa0192750:three_prime_UTR | 10.0% |
| !!! | TTTTGCAAAAATATCATTTA+TGG | - | chr2_1:8580449-8580468 | Msa0192750:three_prime_UTR | 15.0% |
| !! | AAAAAGTTTATAAGCAAAAT+AGG | + | chr2_1:8581092-8581111 | None:intergenic | 15.0% |
| !!! | TGCTTATAAACTTTTTATTT+TGG | - | chr2_1:8581096-8581115 | Msa0192750:intron | 15.0% |
| !!! | TTTTGCAAAAATATCATTTA+TGG | - | chr2_1:8580449-8580468 | Msa0192750:three_prime_UTR | 15.0% |
| !! | AAAAAGTTTATAAGCAAAAT+AGG | + | chr2_1:8581092-8581111 | None:intergenic | 15.0% |
| !!! | TGCTTATAAACTTTTTATTT+TGG | - | chr2_1:8581096-8581115 | Msa0192750:intron | 15.0% |
| !!! | ATCTCCTTCTGAAATTTTTA+GGG | - | chr2_1:8580338-8580357 | Msa0192750:three_prime_UTR | 25.0% |
| ! | AAAACCCTAAAAATTTCAGA+AGG | + | chr2_1:8580345-8580364 | None:intergenic | 25.0% |
| ! | CACAACATGAACATAAAATT+TGG | + | chr2_1:8580500-8580519 | None:intergenic | 25.0% |
| !!! | AATCTATTTGTTGTTTGTTC+AGG | - | chr2_1:8580628-8580647 | Msa0192750:exon | 25.0% |
| ! | AATACCATGAAAAAAGAGTT+TGG | + | chr2_1:8580737-8580756 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCTTTTATTGC+AGG | - | chr2_1:8580827-8580846 | Msa0192750:intron | 25.0% |
| ! | ATAATAGTGCTCAAATTCAT+TGG | - | chr2_1:8580929-8580948 | Msa0192750:intron | 25.0% |
| !!! | AAAGTTTTGGATAAGATTGT+GGG | + | chr2_1:8581380-8581399 | None:intergenic | 25.0% |
| !!! | TAAAGTTTTGGATAAGATTG+TGG | + | chr2_1:8581381-8581400 | None:intergenic | 25.0% |
| !!! | TCTTCATTATGTTTTGTTTG+TGG | - | chr2_1:8581506-8581525 | Msa0192750:five_prime_UTR | 25.0% |
| !!! | ATCTCCTTCTGAAATTTTTA+GGG | - | chr2_1:8580338-8580357 | Msa0192750:three_prime_UTR | 25.0% |
| ! | AAAACCCTAAAAATTTCAGA+AGG | + | chr2_1:8580345-8580364 | None:intergenic | 25.0% |
| ! | CACAACATGAACATAAAATT+TGG | + | chr2_1:8580500-8580519 | None:intergenic | 25.0% |
| !!! | AATCTATTTGTTGTTTGTTC+AGG | - | chr2_1:8580628-8580647 | Msa0192750:exon | 25.0% |
| ! | AATACCATGAAAAAAGAGTT+TGG | + | chr2_1:8580737-8580756 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCTTTTATTGC+AGG | - | chr2_1:8580827-8580846 | Msa0192750:intron | 25.0% |
| ! | ATAATAGTGCTCAAATTCAT+TGG | - | chr2_1:8580929-8580948 | Msa0192750:intron | 25.0% |
| !!! | AAAGTTTTGGATAAGATTGT+GGG | + | chr2_1:8581380-8581399 | None:intergenic | 25.0% |
| !!! | TAAAGTTTTGGATAAGATTG+TGG | + | chr2_1:8581381-8581400 | None:intergenic | 25.0% |
| !!! | TCTTCATTATGTTTTGTTTG+TGG | - | chr2_1:8581506-8581525 | Msa0192750:five_prime_UTR | 25.0% |
| !!! | CATCTCCTTCTGAAATTTTT+AGG | - | chr2_1:8580337-8580356 | Msa0192750:three_prime_UTR | 30.0% |
| CAAATTCAGATCTGAAAAAG+AGG | + | chr2_1:8580429-8580448 | None:intergenic | 30.0% | |
| ! | TCATGTTGTGTTTTCATAAC+AGG | - | chr2_1:8580510-8580529 | Msa0192750:three_prime_UTR | 30.0% |
| CTTACATATTGAAACAACCT+TGG | + | chr2_1:8580863-8580882 | None:intergenic | 30.0% | |
| ! | GGTTGTTTCAATATGTAAGT+TGG | - | chr2_1:8580864-8580883 | Msa0192750:intron | 30.0% |
| ! | GAAATGCTAGGTTAAAGTTT+TGG | + | chr2_1:8581393-8581412 | None:intergenic | 30.0% |
| CAACAGTAAATAGAAATGCT+AGG | + | chr2_1:8581405-8581424 | None:intergenic | 30.0% | |
| !!! | CATCTCCTTCTGAAATTTTT+AGG | - | chr2_1:8580337-8580356 | Msa0192750:three_prime_UTR | 30.0% |
| CAAATTCAGATCTGAAAAAG+AGG | + | chr2_1:8580429-8580448 | None:intergenic | 30.0% | |
| ! | TCATGTTGTGTTTTCATAAC+AGG | - | chr2_1:8580510-8580529 | Msa0192750:three_prime_UTR | 30.0% |
| CTTACATATTGAAACAACCT+TGG | + | chr2_1:8580863-8580882 | None:intergenic | 30.0% | |
| ! | GGTTGTTTCAATATGTAAGT+TGG | - | chr2_1:8580864-8580883 | Msa0192750:intron | 30.0% |
| ! | GAAATGCTAGGTTAAAGTTT+TGG | + | chr2_1:8581393-8581412 | None:intergenic | 30.0% |
| CAACAGTAAATAGAAATGCT+AGG | + | chr2_1:8581405-8581424 | None:intergenic | 30.0% | |
| AGATCTGAAAAAGAGGAACA+GGG | + | chr2_1:8580422-8580441 | None:intergenic | 35.0% | |
| !!! | GTCACCAAACTCTTTTTTCA+TGG | - | chr2_1:8580730-8580749 | Msa0192750:CDS | 35.0% |
| TGTCATCTTTACTTTGTCCA+TGG | - | chr2_1:8581258-8581277 | Msa0192750:intron | 35.0% | |
| TCTATTTACTGTTGTGCATC+TGG | - | chr2_1:8581411-8581430 | Msa0192750:intron | 35.0% | |
| AGATCTGAAAAAGAGGAACA+GGG | + | chr2_1:8580422-8580441 | None:intergenic | 35.0% | |
| !!! | GTCACCAAACTCTTTTTTCA+TGG | - | chr2_1:8580730-8580749 | Msa0192750:CDS | 35.0% |
| TGTCATCTTTACTTTGTCCA+TGG | - | chr2_1:8581258-8581277 | Msa0192750:intron | 35.0% | |
| TCTATTTACTGTTGTGCATC+TGG | - | chr2_1:8581411-8581430 | Msa0192750:intron | 35.0% | |
| CGGAAAATGTTGGAAAACAG+AGG | + | chr2_1:8580384-8580403 | None:intergenic | 40.0% | |
| CAGATCTGAAAAAGAGGAAC+AGG | + | chr2_1:8580423-8580442 | None:intergenic | 40.0% | |
| TTGCAGGATGTAAAATGCCA+AGG | - | chr2_1:8580843-8580862 | Msa0192750:intron | 40.0% | |
| TAACAGAAGGATGCTCCTTT+AGG | - | chr2_1:8581214-8581233 | Msa0192750:CDS | 40.0% | |
| TTAGTCTCCCTTCTTCCTAA+AGG | + | chr2_1:8581232-8581251 | None:intergenic | 40.0% | |
| TAGGAAGAAGGGAGACTAAA+TGG | - | chr2_1:8581233-8581252 | Msa0192750:intron | 40.0% | |
| TGTGGTTGTTAGGCTTAAGA+TGG | - | chr2_1:8581290-8581309 | Msa0192750:intron | 40.0% | |
| CGGAAAATGTTGGAAAACAG+AGG | + | chr2_1:8580384-8580403 | None:intergenic | 40.0% | |
| CAGATCTGAAAAAGAGGAAC+AGG | + | chr2_1:8580423-8580442 | None:intergenic | 40.0% | |
| TTGCAGGATGTAAAATGCCA+AGG | - | chr2_1:8580843-8580862 | Msa0192750:intron | 40.0% | |
| TAACAGAAGGATGCTCCTTT+AGG | - | chr2_1:8581214-8581233 | Msa0192750:CDS | 40.0% | |
| TTAGTCTCCCTTCTTCCTAA+AGG | + | chr2_1:8581232-8581251 | None:intergenic | 40.0% | |
| TAGGAAGAAGGGAGACTAAA+TGG | - | chr2_1:8581233-8581252 | Msa0192750:intron | 40.0% | |
| TGTGGTTGTTAGGCTTAAGA+TGG | - | chr2_1:8581290-8581309 | Msa0192750:intron | 40.0% | |
| ! | TCCAACATTTTCCGCCAACA+TGG | - | chr2_1:8580390-8580409 | Msa0192750:three_prime_UTR | 45.0% |
| ACCATGTTGGCGGAAAATGT+TGG | + | chr2_1:8580394-8580413 | None:intergenic | 45.0% | |
| TTTCTCTTCTCAAGCTCAGC+TGG | + | chr2_1:8580686-8580705 | None:intergenic | 45.0% | |
| TTGAGAGTGGCTAAAGACAG+TGG | + | chr2_1:8581130-8581149 | None:intergenic | 45.0% | |
| !! | ATCCTTCTGTTAGCCTTGCA+CGG | + | chr2_1:8581206-8581225 | None:intergenic | 45.0% |
| ! | AGGATGCTCCTTTAGGAAGA+AGG | - | chr2_1:8581221-8581240 | Msa0192750:CDS | 45.0% |
| ! | GGATGCTCCTTTAGGAAGAA+GGG | - | chr2_1:8581222-8581241 | Msa0192750:CDS | 45.0% |
| GTTGCAGAGTTGTGGTTGTT+AGG | - | chr2_1:8581280-8581299 | Msa0192750:intron | 45.0% | |
| CGTGTAATCTGTCTTGCGAT+TGG | - | chr2_1:8581529-8581548 | Msa0192750:five_prime_UTR | 45.0% | |
| ! | TCCAACATTTTCCGCCAACA+TGG | - | chr2_1:8580390-8580409 | Msa0192750:three_prime_UTR | 45.0% |
| ACCATGTTGGCGGAAAATGT+TGG | + | chr2_1:8580394-8580413 | None:intergenic | 45.0% | |
| TTTCTCTTCTCAAGCTCAGC+TGG | + | chr2_1:8580686-8580705 | None:intergenic | 45.0% | |
| TTGAGAGTGGCTAAAGACAG+TGG | + | chr2_1:8581130-8581149 | None:intergenic | 45.0% | |
| !! | ATCCTTCTGTTAGCCTTGCA+CGG | + | chr2_1:8581206-8581225 | None:intergenic | 45.0% |
| ! | AGGATGCTCCTTTAGGAAGA+AGG | - | chr2_1:8581221-8581240 | Msa0192750:CDS | 45.0% |
| ! | GGATGCTCCTTTAGGAAGAA+GGG | - | chr2_1:8581222-8581241 | Msa0192750:CDS | 45.0% |
| GTTGCAGAGTTGTGGTTGTT+AGG | - | chr2_1:8581280-8581299 | Msa0192750:intron | 45.0% | |
| CGTGTAATCTGTCTTGCGAT+TGG | - | chr2_1:8581529-8581548 | Msa0192750:five_prime_UTR | 45.0% | |
| TCTTCTCAAGCTCAGCTGGT+GGG | + | chr2_1:8580682-8580701 | None:intergenic | 50.0% | |
| TAGCCACTCTCAAACCGTTG+TGG | - | chr2_1:8581137-8581156 | Msa0192750:intron | 50.0% | |
| ACACCACAACGGTTTGAGAG+TGG | + | chr2_1:8581143-8581162 | None:intergenic | 50.0% | |
| TCTCAAACCGTTGTGGTGTG+CGG | - | chr2_1:8581144-8581163 | Msa0192750:CDS | 50.0% | |
| ACAGTTACCGCACACCACAA+CGG | + | chr2_1:8581154-8581173 | None:intergenic | 50.0% | |
| TGTCCATGGTTGCAGAGTTG+TGG | - | chr2_1:8581272-8581291 | Msa0192750:intron | 50.0% | |
| CAACCACAACTCTGCAACCA+TGG | + | chr2_1:8581278-8581297 | None:intergenic | 50.0% | |
| TCTTCTCAAGCTCAGCTGGT+GGG | + | chr2_1:8580682-8580701 | None:intergenic | 50.0% | |
| TAGCCACTCTCAAACCGTTG+TGG | - | chr2_1:8581137-8581156 | Msa0192750:intron | 50.0% | |
| ACACCACAACGGTTTGAGAG+TGG | + | chr2_1:8581143-8581162 | None:intergenic | 50.0% | |
| TCTCAAACCGTTGTGGTGTG+CGG | - | chr2_1:8581144-8581163 | Msa0192750:CDS | 50.0% | |
| ACAGTTACCGCACACCACAA+CGG | + | chr2_1:8581154-8581173 | None:intergenic | 50.0% | |
| TGTCCATGGTTGCAGAGTTG+TGG | - | chr2_1:8581272-8581291 | Msa0192750:intron | 50.0% | |
| CAACCACAACTCTGCAACCA+TGG | + | chr2_1:8581278-8581297 | None:intergenic | 50.0% | |
| !! | GAACAGGGCACTGACCATGT+TGG | + | chr2_1:8580407-8580426 | None:intergenic | 55.0% |
| CTCTTCTCAAGCTCAGCTGG+TGG | + | chr2_1:8580683-8580702 | None:intergenic | 55.0% | |
| ! | ACCTGTTGGCTGGCACAAGA+CGG | + | chr2_1:8581181-8581200 | None:intergenic | 55.0% |
| !! | GAACAGGGCACTGACCATGT+TGG | + | chr2_1:8580407-8580426 | None:intergenic | 55.0% |
| CTCTTCTCAAGCTCAGCTGG+TGG | + | chr2_1:8580683-8580702 | None:intergenic | 55.0% | |
| ! | ACCTGTTGGCTGGCACAAGA+CGG | + | chr2_1:8581181-8581200 | None:intergenic | 55.0% |
| !! | CAGGGCACTGACCATGTTGG+CGG | + | chr2_1:8580404-8580423 | None:intergenic | 60.0% |
| ACCGTCTTGTGCCAGCCAAC+AGG | - | chr2_1:8581177-8581196 | Msa0192750:CDS | 60.0% | |
| GTCTTGTGCCAGCCAACAGG+TGG | - | chr2_1:8581180-8581199 | Msa0192750:CDS | 60.0% | |
| GGCCGTGCAAGGCTAACAGA+AGG | - | chr2_1:8581201-8581220 | Msa0192750:CDS | 60.0% | |
| !! | CAGGGCACTGACCATGTTGG+CGG | + | chr2_1:8580404-8580423 | None:intergenic | 60.0% |
| ACCGTCTTGTGCCAGCCAAC+AGG | - | chr2_1:8581177-8581196 | Msa0192750:CDS | 60.0% | |
| GTCTTGTGCCAGCCAACAGG+TGG | - | chr2_1:8581180-8581199 | Msa0192750:CDS | 60.0% | |
| GGCCGTGCAAGGCTAACAGA+AGG | - | chr2_1:8581201-8581220 | Msa0192750:CDS | 60.0% | |
| TTGCACGGCCACCTGTTGGC+TGG | + | chr2_1:8581191-8581210 | None:intergenic | 65.0% | |
| AGCCAACAGGTGGCCGTGCA+AGG | - | chr2_1:8581190-8581209 | Msa0192750:CDS | 65.0% | |
| AGCCTTGCACGGCCACCTGT+TGG | + | chr2_1:8581195-8581214 | None:intergenic | 65.0% | |
| TTGCACGGCCACCTGTTGGC+TGG | + | chr2_1:8581191-8581210 | None:intergenic | 65.0% | |
| AGCCAACAGGTGGCCGTGCA+AGG | - | chr2_1:8581190-8581209 | Msa0192750:CDS | 65.0% | |
| AGCCTTGCACGGCCACCTGT+TGG | + | chr2_1:8581195-8581214 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 8580333 | 8581561 | 8580333 | ID=Msa0192750;Name=Msa0192750 |
| chr2_1 | mRNA | 8580333 | 8581561 | 8580333 | ID=Msa0192750-mRNA-1;Parent=Msa0192750;Name=Msa0192750-mRNA-1;_AED=0.03;_eAED=0.03;_QI=76|1|1|1|1|1|4|310|86 |
| chr2_1 | exon | 8580333 | 8580769 | 8580333 | ID=Msa0192750-mRNA-1:exon:3959;Parent=Msa0192750-mRNA-1 |
| chr2_1 | exon | 8581017 | 8581045 | 8581017 | ID=Msa0192750-mRNA-1:exon:3958;Parent=Msa0192750-mRNA-1 |
| chr2_1 | exon | 8581143 | 8581244 | 8581143 | ID=Msa0192750-mRNA-1:exon:3957;Parent=Msa0192750-mRNA-1 |
| chr2_1 | exon | 8581483 | 8581561 | 8581483 | ID=Msa0192750-mRNA-1:exon:3956;Parent=Msa0192750-mRNA-1 |
| chr2_1 | five_prime_UTR | 8581486 | 8581561 | 8581486 | ID=Msa0192750-mRNA-1:five_prime_utr;Parent=Msa0192750-mRNA-1 |
| chr2_1 | CDS | 8581483 | 8581485 | 8581483 | ID=Msa0192750-mRNA-1:cds;Parent=Msa0192750-mRNA-1 |
| chr2_1 | CDS | 8581143 | 8581244 | 8581143 | ID=Msa0192750-mRNA-1:cds;Parent=Msa0192750-mRNA-1 |
| chr2_1 | CDS | 8581017 | 8581045 | 8581017 | ID=Msa0192750-mRNA-1:cds;Parent=Msa0192750-mRNA-1 |
| chr2_1 | CDS | 8580643 | 8580769 | 8580643 | ID=Msa0192750-mRNA-1:cds;Parent=Msa0192750-mRNA-1 |
| chr2_1 | three_prime_UTR | 8580333 | 8580642 | 8580333 | ID=Msa0192750-mRNA-1:three_prime_utr;Parent=Msa0192750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
