Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027590 | XP_013468487.1 | 100.000 | 164 | 0 | 0 | 1 | 164 | 1 | 164 | 1.27e-116 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027590 | sp|Q43291|RL211_ARATH | 81.098 | 164 | 31 | 0 | 1 | 164 | 1 | 164 | 3.52e-100 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0027590 | 0.871309 | 7.541072e-67 | -8.615850e-47 |
| Msa0003330 | Msa0027590 | 0.885061 | 1.124952e-71 | -8.615850e-47 |
| Msa0003360 | Msa0027590 | 0.800568 | 1.356230e-48 | -8.615850e-47 |
| Msa0021290 | Msa0027590 | 0.809759 | 1.614334e-50 | -8.615850e-47 |
| Msa0027590 | Msa0040220 | 0.846247 | 2.448960e-59 | -8.615850e-47 |
| Msa0027590 | Msa0044010 | 0.821808 | 3.315432e-53 | -8.615850e-47 |
| Msa0027590 | Msa0065110 | 0.808133 | 3.597107e-50 | -8.615850e-47 |
| Msa0027590 | Msa0070840 | 0.807408 | 5.130149e-50 | -8.615850e-47 |
| Msa0027590 | Msa0072570 | 0.855334 | 6.765601e-62 | -8.615850e-47 |
| Msa0027590 | Msa0075350 | 0.966953 | 1.293749e-126 | -8.615850e-47 |
| Msa0027590 | Msa0079590 | 0.800630 | 1.316720e-48 | -8.615850e-47 |
| Msa0027590 | Msa0087910 | 0.849831 | 2.511567e-60 | -8.615850e-47 |
| Msa0027590 | Msa0094210 | 0.835221 | 1.903200e-56 | -8.615850e-47 |
| Msa0027590 | Msa0114570 | 0.803375 | 3.592623e-49 | -8.615850e-47 |
| Msa0027590 | Msa0114600 | 0.814359 | 1.604195e-51 | -8.615850e-47 |
| Msa0027590 | Msa0122550 | 0.800497 | 1.401874e-48 | -8.615850e-47 |
| Msa0027590 | Msa0123290 | 0.835119 | 2.019413e-56 | -8.615850e-47 |
| Msa0027590 | Msa0128330 | 0.880122 | 7.115813e-70 | -8.615850e-47 |
| Msa0027590 | Msa0128750 | 0.807904 | 4.024758e-50 | -8.615850e-47 |
| Msa0027590 | Msa0132460 | 0.850330 | 1.820888e-60 | -8.615850e-47 |
| Msa0027590 | Msa0134580 | 0.868402 | 6.707039e-66 | -8.615850e-47 |
| Msa0027590 | Msa0138890 | 0.816690 | 4.856382e-52 | -8.615850e-47 |
| Msa0027590 | Msa0146580 | 0.804686 | 1.917652e-49 | -8.615850e-47 |
| Msa0027590 | Msa0167860 | 0.911276 | 7.300885e-83 | -8.615850e-47 |
| Msa0027590 | Msa0168320 | 0.874648 | 5.732906e-68 | -8.615850e-47 |
| Msa0027590 | Msa0174580 | 0.867693 | 1.134014e-65 | -8.615850e-47 |
| Msa0027590 | Msa0175000 | 0.839322 | 1.698052e-57 | -8.615850e-47 |
| Msa0027590 | Msa0182050 | 0.856285 | 3.568382e-62 | -8.615850e-47 |
| Msa0027590 | Msa0182100 | 0.833802 | 4.325700e-56 | -8.615850e-47 |
| Msa0027590 | Msa0183840 | 0.812452 | 4.210291e-51 | -8.615850e-47 |
| Msa0027590 | Msa0186740 | 0.810202 | 1.295800e-50 | -8.615850e-47 |
| Msa0027590 | Msa0187810 | 0.803491 | 3.399378e-49 | -8.615850e-47 |
| Msa0027590 | Msa0191450 | 0.905120 | 6.002201e-80 | -8.615850e-47 |
| Msa0027590 | Msa0191550 | 0.894828 | 1.708026e-75 | -8.615850e-47 |
| Msa0027590 | Msa0192300 | 0.875806 | 2.304144e-68 | -8.615850e-47 |
| Msa0027590 | Msa0192750 | 0.851261 | 9.960635e-61 | -8.615850e-47 |
| Msa0027590 | Msa0194940 | 0.878625 | 2.413969e-69 | -8.615850e-47 |
| Msa0027590 | Msa0195030 | 0.835530 | 1.590448e-56 | -8.615850e-47 |
| Msa0027590 | Msa0210360 | 0.823879 | 1.092157e-53 | -8.615850e-47 |
| Msa0027590 | Msa0229150 | 0.811134 | 8.147860e-51 | -8.615850e-47 |
| Msa0027590 | Msa0233550 | 0.859057 | 5.382228e-63 | -8.615850e-47 |
| Msa0027590 | Msa0235050 | 0.862150 | 6.213000e-64 | -8.615850e-47 |
| Msa0027590 | Msa0237180 | 0.810945 | 8.953181e-51 | -8.615850e-47 |
| Msa0027590 | Msa0239420 | 0.879090 | 1.655181e-69 | -8.615850e-47 |
| Msa0027590 | Msa0264640 | 0.825336 | 4.955462e-54 | -8.615850e-47 |
| Msa0027590 | Msa0274940 | 0.815986 | 6.979269e-52 | -8.615850e-47 |
| Msa0027590 | Msa0277600 | 0.866198 | 3.397899e-65 | -8.615850e-47 |
| Msa0027590 | Msa0281330 | 0.849628 | 2.861419e-60 | -8.615850e-47 |
| Msa0027590 | Msa0281370 | 0.893565 | 5.586558e-75 | -8.615850e-47 |
| Msa0027590 | Msa0297830 | 0.815661 | 8.246567e-52 | -8.615850e-47 |
| Msa0027590 | Msa0298870 | 0.810699 | 1.012499e-50 | -8.615850e-47 |
| Msa0027590 | Msa0301220 | 0.840771 | 7.115221e-58 | -8.615850e-47 |
| Msa0027590 | Msa0301250 | 0.878442 | 2.798643e-69 | -8.615850e-47 |
| Msa0027590 | Msa0303630 | 0.811270 | 7.612770e-51 | -8.615850e-47 |
| Msa0027590 | Msa0312210 | 0.831579 | 1.540886e-55 | -8.615850e-47 |
| Msa0027590 | Msa0313060 | 0.882942 | 6.818537e-71 | -8.615850e-47 |
| Msa0027590 | Msa0313520 | 0.816758 | 4.688810e-52 | -8.615850e-47 |
| Msa0027590 | Msa0315430 | 0.899159 | 2.610997e-77 | -8.615850e-47 |
| Msa0027590 | Msa0315660 | 0.818151 | 2.276734e-52 | -8.615850e-47 |
| Msa0027590 | Msa0321270 | 0.806973 | 6.341060e-50 | -8.615850e-47 |
| Msa0027590 | Msa0335840 | 0.828331 | 9.540818e-55 | -8.615850e-47 |
| Msa0027590 | Msa0340560 | 0.859689 | 3.477302e-63 | -8.615850e-47 |
| Msa0027590 | Msa0346090 | 0.875113 | 3.980875e-68 | -8.615850e-47 |
| Msa0027590 | Msa0369410 | 0.898541 | 4.797759e-77 | -8.615850e-47 |
| Msa0027590 | Msa0371490 | 0.854994 | 8.495367e-62 | -8.615850e-47 |
| Msa0027590 | Msa0376850 | 0.813346 | 2.681591e-51 | -8.615850e-47 |
| Msa0027590 | Msa0377370 | 0.813662 | 2.284958e-51 | -8.615850e-47 |
| Msa0027590 | Msa0377520 | 0.875578 | 2.758700e-68 | -8.615850e-47 |
| Msa0027590 | Msa0382670 | 0.861426 | 1.034806e-63 | -8.615850e-47 |
| Msa0027590 | Msa0426090 | 0.894172 | 3.166932e-75 | -8.615850e-47 |
| Msa0027590 | Msa0426250 | 0.868018 | 8.917833e-66 | -8.615850e-47 |
| Msa0027590 | Msa0438960 | 0.804218 | 2.400946e-49 | -8.615850e-47 |
| Msa0027590 | Msa0450150 | 0.800260 | 1.566488e-48 | -8.615850e-47 |
| Msa0027590 | Msa0463520 | 0.840771 | 7.115221e-58 | -8.615850e-47 |
| Msa0027590 | Msa0471880 | 0.813083 | 3.063190e-51 | -8.615850e-47 |
| Msa0027590 | Msa0472480 | 0.898604 | 4.510336e-77 | -8.615850e-47 |
| Msa0027590 | Msa0473390 | 0.808430 | 3.108807e-50 | -8.615850e-47 |
| Msa0027590 | Msa0475810 | 0.839225 | 1.799329e-57 | -8.615850e-47 |
| Msa0027590 | Msa0481520 | 0.921030 | 6.033151e-88 | -8.615850e-47 |
| Msa0027590 | Msa0481850 | 0.826995 | 1.997666e-54 | -8.615850e-47 |
| Msa0027590 | Msa0482560 | 0.806414 | 8.322605e-50 | -8.615850e-47 |
| Msa0027590 | Msa0485220 | 0.808464 | 3.057299e-50 | -8.615850e-47 |
| Msa0027590 | Msa0511760 | 0.840704 | 7.407665e-58 | -8.615850e-47 |
| Msa0027590 | Msa0516830 | 0.813632 | 2.320229e-51 | -8.615850e-47 |
| Msa0027590 | Msa0517480 | 0.902794 | 6.733412e-79 | -8.615850e-47 |
| Msa0027590 | Msa0529900 | 0.845519 | 3.861546e-59 | -8.615850e-47 |
| Msa0027590 | Msa0540480 | 0.822867 | 1.882021e-53 | -8.615850e-47 |
| Msa0027590 | Msa0547920 | 0.873095 | 1.917769e-67 | -8.615850e-47 |
| Msa0027590 | Msa0550420 | 0.829442 | 5.136582e-55 | -8.615850e-47 |
| Msa0027590 | Msa0573550 | 0.919090 | 6.947677e-87 | -8.615850e-47 |
| Msa0027590 | Msa0574780 | 0.842189 | 3.010426e-58 | -8.615850e-47 |
| Msa0027590 | Msa0579830 | 0.831158 | 1.955540e-55 | -8.615850e-47 |
| Msa0027590 | Msa0582070 | 0.873577 | 1.320202e-67 | -8.615850e-47 |
| Msa0027590 | Msa0584030 | 0.808196 | 3.487698e-50 | -8.615850e-47 |
| Msa0027590 | Msa0596370 | 0.815428 | 9.292770e-52 | -8.615850e-47 |
| Msa0027590 | Msa0597240 | 0.913629 | 4.930102e-84 | -8.615850e-47 |
| Msa0027590 | Msa0602900 | 0.858562 | 7.567073e-63 | -8.615850e-47 |
| Msa0027590 | Msa0605890 | 0.882941 | 6.825775e-71 | -8.615850e-47 |
| Msa0027590 | Msa0619230 | 0.875601 | 2.709787e-68 | -8.615850e-47 |
| Msa0027590 | Msa0621190 | 0.807110 | 5.930761e-50 | -8.615850e-47 |
| Msa0027590 | Msa0622230 | 0.854533 | 1.155610e-61 | -8.615850e-47 |
| Msa0027590 | Msa0623370 | 0.803554 | 3.298699e-49 | -8.615850e-47 |
| Msa0027590 | Msa0643960 | 0.859992 | 2.816253e-63 | -8.615850e-47 |
| Msa0027590 | Msa0649890 | 0.833336 | 5.654407e-56 | -8.615850e-47 |
| Msa0027590 | Msa0653060 | 0.838264 | 3.188007e-57 | -8.615850e-47 |
| Msa0027590 | Msa0681220 | 0.809922 | 1.488765e-50 | -8.615850e-47 |
| Msa0027590 | Msa0686550 | 0.859369 | 4.338090e-63 | -8.615850e-47 |
| Msa0027590 | Msa0691760 | 0.814182 | 1.754728e-51 | -8.615850e-47 |
| Msa0027590 | Msa0694400 | 0.894893 | 1.605589e-75 | -8.615850e-47 |
| Msa0027590 | Msa0704860 | 0.871238 | 7.956717e-67 | -8.615850e-47 |
| Msa0027590 | Msa0705800 | 0.882815 | 7.589258e-71 | -8.615850e-47 |
| Msa0027590 | Msa0708630 | 0.850019 | 2.225640e-60 | -8.615850e-47 |
| Msa0027590 | Msa0712610 | 0.821380 | 4.163863e-53 | -8.615850e-47 |
| Msa0027590 | Msa0748350 | 0.865310 | 6.479758e-65 | -8.615850e-47 |
| Msa0027590 | Msa0752910 | 0.815104 | 1.096689e-51 | -8.615850e-47 |
| Msa0027590 | Msa0758420 | 0.853127 | 2.933860e-61 | -8.615850e-47 |
| Msa0027590 | Msa0781080 | 0.815313 | 9.854479e-52 | -8.615850e-47 |
| Msa0027590 | Msa0788380 | 0.926417 | 4.822772e-91 | -8.615850e-47 |
| Msa0027590 | Msa0799830 | 0.811626 | 6.373820e-51 | -8.615850e-47 |
| Msa0027590 | Msa0822580 | 0.859631 | 3.618825e-63 | -8.615850e-47 |
| Msa0027590 | Msa0834220 | 0.836573 | 8.646289e-57 | -8.615850e-47 |
| Msa0027590 | Msa0838070 | 0.863382 | 2.591479e-64 | -8.615850e-47 |
| Msa0027590 | Msa0861320 | 0.849771 | 2.611193e-60 | -8.615850e-47 |
| Msa0027590 | Msa0880050 | 0.802798 | 4.728381e-49 | -8.615850e-47 |
| Msa0027590 | Msa0915540 | 0.829847 | 4.092753e-55 | -8.615850e-47 |
| Msa0027590 | Msa0929680 | 0.858786 | 6.484841e-63 | -8.615850e-47 |
| Msa0027590 | Msa0929700 | 0.925043 | 3.126708e-90 | -8.615850e-47 |
| Msa0027590 | Msa0929790 | 0.824163 | 9.364743e-54 | -8.615850e-47 |
| Msa0027590 | Msa0930360 | 0.817045 | 4.042058e-52 | -8.615850e-47 |
| Msa0027590 | Msa0930790 | 0.835252 | 1.870054e-56 | -8.615850e-47 |
| Msa0027590 | Msa0930890 | 0.818754 | 1.661857e-52 | -8.615850e-47 |
| Msa0027590 | Msa1037290 | 0.877945 | 4.181738e-69 | -8.615850e-47 |
| Msa0027590 | Msa1040160 | 0.889345 | 2.631488e-73 | -8.615850e-47 |
| Msa0027590 | Msa1041680 | 0.908361 | 1.860279e-81 | -8.615850e-47 |
| Msa0027590 | Msa1042100 | 0.862986 | 3.434596e-64 | -8.615850e-47 |
| Msa0027590 | Msa1054280 | 0.811783 | 5.890510e-51 | -8.615850e-47 |
| Msa0027590 | Msa1082050 | 0.804515 | 2.082122e-49 | -8.615850e-47 |
| Msa0027590 | Msa1082170 | 0.890145 | 1.283327e-73 | -8.615850e-47 |
| Msa0027590 | Msa1083370 | 0.894951 | 1.520052e-75 | -8.615850e-47 |
| Msa0027590 | Msa1116940 | 0.840056 | 1.094390e-57 | -8.615850e-47 |
| Msa0027590 | Msa1126520 | 0.871498 | 6.530588e-67 | -8.615850e-47 |
| Msa0027590 | Msa1126690 | 0.832515 | 9.047058e-56 | -8.615850e-47 |
| Msa0027590 | Msa1131030 | 0.814638 | 1.391248e-51 | -8.615850e-47 |
| Msa0027590 | Msa1164150 | 0.891199 | 4.938057e-74 | -8.615850e-47 |
| Msa0027590 | Msa1165640 | 0.859375 | 4.319245e-63 | -8.615850e-47 |
| Msa0027590 | Msa1166570 | 0.912466 | 1.885158e-83 | -8.615850e-47 |
| Msa0027590 | Msa1167360 | 0.804426 | 2.172131e-49 | -8.615850e-47 |
| Msa0027590 | Msa1167540 | 0.804556 | 2.040977e-49 | -8.615850e-47 |
| Msa0027590 | Msa1167550 | 0.803846 | 2.868779e-49 | -8.615850e-47 |
| Msa0027590 | Msa1180000 | 0.874883 | 4.766835e-68 | -8.615850e-47 |
| Msa0027590 | Msa1186030 | 0.915313 | 6.828975e-85 | -8.615850e-47 |
| Msa0027590 | Msa1206240 | 0.872810 | 2.388748e-67 | -8.615850e-47 |
| Msa0027590 | Msa1213850 | 0.803113 | 4.070437e-49 | -8.615850e-47 |
| Msa0027590 | Msa1218170 | 0.865899 | 4.223564e-65 | -8.615850e-47 |
| Msa0027590 | Msa1235950 | 0.870304 | 1.615022e-66 | -8.615850e-47 |
| Msa0027590 | Msa1235980 | 0.880233 | 6.496493e-70 | -8.615850e-47 |
| Msa0027590 | Msa1237040 | 0.871662 | 5.762769e-67 | -8.615850e-47 |
| Msa0027590 | Msa1240270 | 0.911484 | 5.771688e-83 | -8.615850e-47 |
| Msa0027590 | Msa1258540 | 0.874132 | 8.572391e-68 | -8.615850e-47 |
| Msa0027590 | Msa1263620 | 0.800287 | 1.547192e-48 | -8.615850e-47 |
| Msa0027590 | Msa1270640 | 0.861849 | 7.683253e-64 | -8.615850e-47 |
| Msa0027590 | Msa1270710 | 0.859984 | 2.833553e-63 | -8.615850e-47 |
| Msa0027590 | Msa1278130 | 0.842939 | 1.902843e-58 | -8.615850e-47 |
| Msa0027590 | Msa1284060 | 0.806510 | 7.944595e-50 | -8.615850e-47 |
| Msa0027590 | Msa1311400 | 0.854364 | 1.293065e-61 | -8.615850e-47 |
| Msa0027590 | Msa1316100 | 0.852428 | 4.646184e-61 | -8.615850e-47 |
| Msa0027590 | Msa1317390 | 0.872840 | 2.333743e-67 | -8.615850e-47 |
| Msa0027590 | Msa1351020 | 0.871482 | 6.606241e-67 | -8.615850e-47 |
| Msa0027590 | Msa1351910 | 0.809459 | 1.872372e-50 | -8.615850e-47 |
| Msa0027590 | Msa1356790 | 0.814861 | 1.241693e-51 | -8.615850e-47 |
| Msa0027590 | Msa1358710 | 0.863817 | 1.898053e-64 | -8.615850e-47 |
| Msa0027590 | Msa1363910 | 0.847812 | 9.123354e-60 | -8.615850e-47 |
| Msa0027590 | Msa1364110 | 0.806671 | 7.345920e-50 | -8.615850e-47 |
| Msa0027590 | Msa1368920 | 0.880959 | 3.571610e-70 | -8.615850e-47 |
| Msa0027590 | Msa1374240 | 0.828395 | 9.206382e-55 | -8.615850e-47 |
| Msa0027590 | Msa1385480 | 0.865579 | 5.329321e-65 | -8.615850e-47 |
| Msa0027590 | Msa1390760 | 0.872860 | 2.297771e-67 | -8.615850e-47 |
| Msa0027590 | Msa1392590 | 0.837976 | 3.782310e-57 | -8.615850e-47 |
| Msa0027590 | Msa1397100 | 0.808840 | 2.541899e-50 | -8.615850e-47 |
| Msa0027590 | Msa1403910 | 0.844907 | 5.652895e-59 | -8.615850e-47 |
| Msa0027590 | Msa1407550 | 0.825153 | 5.473560e-54 | -8.615850e-47 |
| Msa0027590 | Msa1423050 | 0.804115 | 2.521540e-49 | -8.615850e-47 |
| Msa0027590 | Msa1425070 | 0.832157 | 1.109360e-55 | -8.615850e-47 |
| Msa0027590 | Msa1432310 | 0.861964 | 7.086777e-64 | -8.615850e-47 |
| Msa0027590 | Msa1446410 | 0.865588 | 5.295319e-65 | -8.615850e-47 |
| Msa0027590 | Msa1449160 | 0.868336 | 7.041304e-66 | -8.615850e-47 |
| Msa0027590 | Msa1450560 | 0.807637 | 4.586542e-50 | -8.615850e-47 |
| Msa0027590 | Msa1453380 | 0.815852 | 7.474790e-52 | -8.615850e-47 |
| Msa0027590 | Msa1453530 | 0.835025 | 2.133258e-56 | -8.615850e-47 |
| Msa0027590 | Msa1463570 | 0.884345 | 2.075432e-71 | -8.615850e-47 |
| Msa0027590 | Msa1463580 | 0.812376 | 4.373414e-51 | -8.615850e-47 |
| Msa0027590 | Msa1465700 | 0.895248 | 1.147252e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027590 | MtrunA17_Chr1g0183851 | 100.000 | 164 | 0 | 0 | 1 | 164 | 1 | 164 | 1.17e-120 | 337 |
| Msa0027590 | MtrunA17_Chr7g0268461 | 99.390 | 164 | 1 | 0 | 1 | 164 | 1 | 164 | 1.81e-120 | 336 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027590 | AT1G09590.1 | 81.098 | 164 | 31 | 0 | 1 | 164 | 1 | 164 | 3.58e-101 | 288 |
| Msa0027590 | AT1G09690.1 | 81.098 | 164 | 31 | 0 | 1 | 164 | 1 | 164 | 3.58e-101 | 288 |
| Msa0027590 | AT1G57660.1 | 80.488 | 164 | 32 | 0 | 1 | 164 | 1 | 164 | 1.08e-100 | 286 |
| Msa0027590 | AT1G57860.1 | 80.488 | 164 | 32 | 0 | 1 | 164 | 1 | 164 | 1.08e-100 | 286 |
Find 72 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGTCGACATTAGAGTTAA+TGG | 0.335175 | 1_1:+51945759 | Msa0027590:CDS |
| TCCACCATGAAACCAGGTTT+GGG | 0.345744 | 1_1:-51946855 | None:intergenic |
| AACTCCTCAGTGCACCTTGA+TGG | 0.353770 | 1_1:-51946744 | None:intergenic |
| AGATCATTAACGACATCATA+TGG | 0.366035 | 1_1:-51946909 | None:intergenic |
| GGGGCCCTCTGGCTTGCGCT+TGG | 0.369033 | 1_1:-51946835 | None:intergenic |
| TTCCACCATGAAACCAGGTT+TGG | 0.392778 | 1_1:-51946856 | None:intergenic |
| GGGCCCCAAACCTGGTTTCA+TGG | 0.399375 | 1_1:+51946851 | Msa0027590:CDS |
| TTAACGACATCATATGGAAT+TGG | 0.408404 | 1_1:-51946903 | None:intergenic |
| CTTGTTGACTTCGACACCAA+TGG | 0.410846 | 1_1:-51945856 | None:intergenic |
| AAACCAGGTTTGGGGCCCTC+TGG | 0.418683 | 1_1:-51946846 | None:intergenic |
| CTGATATTTCATAAATTTGA+AGG | 0.428221 | 1_1:-51947044 | None:intergenic |
| GGAACAAGATATTGAGGAAG+AGG | 0.429842 | 1_1:+51946694 | Msa0027590:CDS |
| ACGGTCGTACCGGTCGTGTC+TGG | 0.430669 | 1_1:+51945817 | Msa0027590:CDS |
| AAGCCAGAGGGCCCCAAACC+TGG | 0.445982 | 1_1:+51946843 | Msa0027590:CDS |
| CTCTCCCTTGGCCTTAGCCT+CGG | 0.448320 | 1_1:-51946802 | None:intergenic |
| GGTGCTTATCACCTCTCCCT+TGG | 0.453810 | 1_1:-51946814 | None:intergenic |
| CTCTCGTCCCTTCCGCAAGA+AGG | 0.461875 | 1_1:+51945689 | Msa0027590:CDS |
| TGTGATTTATGAATATGCTT+GGG | 0.463996 | 1_1:+51947146 | Msa0027590:three_prime_UTR |
| AGACTGCATATTATTGTGCT+TGG | 0.476338 | 1_1:+51946978 | Msa0027590:three_prime_UTR |
| TTCGACACCAATGGCCCGCT+TGG | 0.477602 | 1_1:-51945847 | None:intergenic |
| AGTCCTGAGGTAGGTGGCTA+AGG | 0.478683 | 1_1:-51945721 | None:intergenic |
| CGAGGCTAAGGCCAAGGGAG+AGG | 0.486454 | 1_1:+51946803 | Msa0027590:CDS |
| GGGACGAGAGAATGAATCTC+TGG | 0.494698 | 1_1:-51945676 | None:intergenic |
| AGCACCAAGCGCAAGCCAGA+GGG | 0.504695 | 1_1:+51946831 | Msa0027590:CDS |
| TATTGTTCCCTTCTTGCGGA+AGG | 0.508429 | 1_1:-51945697 | None:intergenic |
| TCAATTGAAGGCCGAGGCTA+AGG | 0.510816 | 1_1:+51946791 | Msa0027590:CDS |
| ATGTGATTTATGAATATGCT+TGG | 0.513941 | 1_1:+51947145 | Msa0027590:three_prime_UTR |
| AATGTCACCAAGCGGGCCAT+TGG | 0.521717 | 1_1:+51945840 | Msa0027590:CDS |
| AAATTCTACCACGGTCGTAC+CGG | 0.524822 | 1_1:+51945807 | Msa0027590:CDS |
| GATCAAGAATGATCAATTGA+AGG | 0.525684 | 1_1:+51946779 | Msa0027590:CDS |
| GAAAACATGCCTGCAGGTCA+TGG | 0.528675 | 1_1:+51945639 | Msa0027590:exon |
| GATCGTAAACCATGACCTGC+AGG | 0.529368 | 1_1:-51945648 | None:intergenic |
| AGGTTAGGAACAAGATATTG+AGG | 0.530172 | 1_1:+51946688 | Msa0027590:intron |
| CATGGTGGAAGGTGCTACAT+TGG | 0.534415 | 1_1:+51946869 | Msa0027590:CDS |
| ATTGTTCCCTTCTTGCGGAA+GGG | 0.538504 | 1_1:-51945696 | None:intergenic |
| AGAGAATGAATCTCTGGTGC+GGG | 0.544173 | 1_1:-51945670 | None:intergenic |
| TCTCGTCCCTTCCGCAAGAA+GGG | 0.545142 | 1_1:+51945690 | Msa0027590:CDS |
| TAGCCTTAGCCACCTACCTC+AGG | 0.549870 | 1_1:+51945718 | Msa0027590:CDS |
| GAATGATCAATTGAAGGCCG+AGG | 0.551548 | 1_1:+51946785 | Msa0027590:CDS |
| AGGCTATTGTTCCCTTCTTG+CGG | 0.554250 | 1_1:-51945701 | None:intergenic |
| AAGCACCAAGCGCAAGCCAG+AGG | 0.557087 | 1_1:+51946830 | Msa0027590:CDS |
| GAAGAAGAAAACATGCCTGC+AGG | 0.557795 | 1_1:+51945633 | Msa0027590:exon |
| TGGAGCATGTTATGCCATCA+AGG | 0.559210 | 1_1:+51946730 | Msa0027590:CDS |
| GCTCGAAATCACACTAGACT+AGG | 0.560183 | 1_1:-51945582 | None:intergenic |
| GAAGGCCGAGGCTAAGGCCA+AGG | 0.560874 | 1_1:+51946797 | Msa0027590:CDS |
| TGATATTTCATAAATTTGAA+GGG | 0.567429 | 1_1:-51947043 | None:intergenic |
| TGTCTGGAATGTCACCAAGC+GGG | 0.572072 | 1_1:+51945833 | Msa0027590:CDS |
| GCACCTTCCACCATGAAACC+AGG | 0.576804 | 1_1:-51946861 | None:intergenic |
| TAGACTAGGAGAAAGAAGAA+AGG | 0.580635 | 1_1:-51945568 | None:intergenic |
| AAACCTGGTTTCATGGTGGA+AGG | 0.589005 | 1_1:+51946858 | Msa0027590:CDS |
| GCACTGAGGAGTTCAGATTG+AGG | 0.599052 | 1_1:+51946754 | Msa0027590:CDS |
| GGTGACATTCCAGACACGAC+CGG | 0.600537 | 1_1:-51945826 | None:intergenic |
| GTGATTTATGAATATGCTTG+GGG | 0.615011 | 1_1:+51947147 | Msa0027590:three_prime_UTR |
| ATGGCATAACATGCTCCACT+CGG | 0.618716 | 1_1:-51946725 | None:intergenic |
| GAGAGAATGAATCTCTGGTG+CGG | 0.619187 | 1_1:-51945671 | None:intergenic |
| GATGTCGTTAATGATCTCAA+AGG | 0.621805 | 1_1:+51946915 | Msa0027590:CDS |
| TAGTCTAGTGTGATTTCGAG+CGG | 0.627394 | 1_1:+51945584 | Msa0027590:five_prime_UTR |
| GTTAATGGAGCTGTGCACAA+AGG | 0.632022 | 1_1:+51945774 | Msa0027590:CDS |
| GTCGTTAATGATCTCAAAGG+AGG | 0.636972 | 1_1:+51946918 | Msa0027590:CDS |
| AAGGCCGAGGCTAAGGCCAA+GGG | 0.643263 | 1_1:+51946798 | Msa0027590:CDS |
| CCACCATGAAACCAGGTTTG+GGG | 0.653619 | 1_1:-51946854 | None:intergenic |
| GTGTCTGGAATGTCACCAAG+CGG | 0.655012 | 1_1:+51945832 | Msa0027590:CDS |
| GTGATAAGTCCTGAGGTAGG+TGG | 0.662852 | 1_1:-51945727 | None:intergenic |
| CGACCGTGGTAGAATTTGTG+CGG | 0.677873 | 1_1:-51945801 | None:intergenic |
| CACCGATGTGATAAGTCCTG+AGG | 0.683027 | 1_1:-51945734 | None:intergenic |
| GATGTGATAAGTCCTGAGGT+AGG | 0.683685 | 1_1:-51945730 | None:intergenic |
| CCCCAAACCTGGTTTCATGG+TGG | 0.684233 | 1_1:+51946854 | Msa0027590:CDS |
| AGACACGACCGGTACGACCG+TGG | 0.690324 | 1_1:-51945815 | None:intergenic |
| GAAGAGGATTCATGTCCGAG+TGG | 0.705446 | 1_1:+51946710 | Msa0027590:CDS |
| TACCTCAGGACTTATCACAT+CGG | 0.727991 | 1_1:+51945732 | Msa0027590:CDS |
| ATGCCGCACAAATTCTACCA+CGG | 0.741255 | 1_1:+51945798 | Msa0027590:CDS |
| TATGCCATCAAGGTGCACTG+AGG | 0.765204 | 1_1:+51946740 | Msa0027590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATATTTCATAAATTTGAA+GGG | - | chr1_1:51947046-51947065 | None:intergenic | 15.0% |
| !! | TGATATTTCATAAATTTGAA+GGG | - | chr1_1:51947046-51947065 | None:intergenic | 15.0% |
| !!! | ACATAAATGAAAGTATTTGT+AGG | - | chr1_1:51946350-51946369 | None:intergenic | 20.0% |
| !!! | GAAGAATTTTGTGTTAAATA+TGG | - | chr1_1:51946493-51946512 | None:intergenic | 20.0% |
| !!! | CAAAATTCTTCTAAGTTTTT+AGG | + | chr1_1:51946502-51946521 | Msa0027590:intron | 20.0% |
| !! | CTGATATTTCATAAATTTGA+AGG | - | chr1_1:51947047-51947066 | None:intergenic | 20.0% |
| !!! | ACATAAATGAAAGTATTTGT+AGG | - | chr1_1:51946350-51946369 | None:intergenic | 20.0% |
| !!! | GAAGAATTTTGTGTTAAATA+TGG | - | chr1_1:51946493-51946512 | None:intergenic | 20.0% |
| !!! | CAAAATTCTTCTAAGTTTTT+AGG | + | chr1_1:51946502-51946521 | Msa0027590:intron | 20.0% |
| !! | CTGATATTTCATAAATTTGA+AGG | - | chr1_1:51947047-51947066 | None:intergenic | 20.0% |
| ! | TTTGCTTTAGTAGTATATTC+AGG | + | chr1_1:51946043-51946062 | Msa0027590:intron | 25.0% |
| ! | TCAAACAACAAAATGAATCA+AGG | - | chr1_1:51946121-51946140 | None:intergenic | 25.0% |
| ! | AGTTGGAAAACAAAAACTTA+GGG | - | chr1_1:51946264-51946283 | None:intergenic | 25.0% |
| ! | AAGTTGGAAAACAAAAACTT+AGG | - | chr1_1:51946265-51946284 | None:intergenic | 25.0% |
| !!! | ATTCGAGTGTTTTAATAAGT+TGG | - | chr1_1:51946281-51946300 | None:intergenic | 25.0% |
| ! | AGGAACTAAACATGATAAAA+TGG | - | chr1_1:51946330-51946349 | None:intergenic | 25.0% |
| !! | ACTTGACATGATGTTTTATA+TGG | + | chr1_1:51946460-51946479 | Msa0027590:intron | 25.0% |
| !!! | TTCTAAGTTTTTAGGTCTTA+AGG | + | chr1_1:51946510-51946529 | Msa0027590:intron | 25.0% |
| !!! | AATGTTGCTATTTATGTTTC+AGG | + | chr1_1:51946668-51946687 | Msa0027590:intron | 25.0% |
| ! | ATGTGATTTATGAATATGCT+TGG | + | chr1_1:51947145-51947164 | Msa0027590:three_prime_UTR | 25.0% |
| ! | TGTGATTTATGAATATGCTT+GGG | + | chr1_1:51947146-51947165 | Msa0027590:three_prime_UTR | 25.0% |
| ! | TTTGCTTTAGTAGTATATTC+AGG | + | chr1_1:51946043-51946062 | Msa0027590:intron | 25.0% |
| ! | TCAAACAACAAAATGAATCA+AGG | - | chr1_1:51946121-51946140 | None:intergenic | 25.0% |
| ! | AGTTGGAAAACAAAAACTTA+GGG | - | chr1_1:51946264-51946283 | None:intergenic | 25.0% |
| ! | AAGTTGGAAAACAAAAACTT+AGG | - | chr1_1:51946265-51946284 | None:intergenic | 25.0% |
| !!! | ATTCGAGTGTTTTAATAAGT+TGG | - | chr1_1:51946281-51946300 | None:intergenic | 25.0% |
| ! | AGGAACTAAACATGATAAAA+TGG | - | chr1_1:51946330-51946349 | None:intergenic | 25.0% |
| !! | ACTTGACATGATGTTTTATA+TGG | + | chr1_1:51946460-51946479 | Msa0027590:intron | 25.0% |
| !!! | TTCTAAGTTTTTAGGTCTTA+AGG | + | chr1_1:51946510-51946529 | Msa0027590:intron | 25.0% |
| !!! | AATGTTGCTATTTATGTTTC+AGG | + | chr1_1:51946668-51946687 | Msa0027590:intron | 25.0% |
| ! | ATGTGATTTATGAATATGCT+TGG | + | chr1_1:51947145-51947164 | Msa0027590:three_prime_UTR | 25.0% |
| ! | TGTGATTTATGAATATGCTT+GGG | + | chr1_1:51947146-51947165 | Msa0027590:three_prime_UTR | 25.0% |
| TATGTCGACATTAGAGTTAA+TGG | + | chr1_1:51945759-51945778 | Msa0027590:CDS | 30.0% | |
| GCAAATATATGTGATGTGAT+AGG | + | chr1_1:51945934-51945953 | Msa0027590:intron | 30.0% | |
| CATCAAAATCACCATATATG+AGG | + | chr1_1:51946421-51946440 | Msa0027590:intron | 30.0% | |
| CTCTTCAAAAACCTCATATA+TGG | - | chr1_1:51946435-51946454 | None:intergenic | 30.0% | |
| TTAATTTCCAGAGAATCTCT+TGG | + | chr1_1:51946557-51946576 | Msa0027590:intron | 30.0% | |
| AATCTCTTGGATAGAATGTA+TGG | + | chr1_1:51946570-51946589 | Msa0027590:intron | 30.0% | |
| CAATATCTTTACAAGCAAAG+CGG | - | chr1_1:51946633-51946652 | None:intergenic | 30.0% | |
| !! | TGCTATTTATGTTTCAGGTT+AGG | + | chr1_1:51946673-51946692 | Msa0027590:intron | 30.0% |
| GATCAAGAATGATCAATTGA+AGG | + | chr1_1:51946779-51946798 | Msa0027590:CDS | 30.0% | |
| TTAACGACATCATATGGAAT+TGG | - | chr1_1:51946906-51946925 | None:intergenic | 30.0% | |
| AGATCATTAACGACATCATA+TGG | - | chr1_1:51946912-51946931 | None:intergenic | 30.0% | |
| GTGATTTATGAATATGCTTG+GGG | + | chr1_1:51947147-51947166 | Msa0027590:three_prime_UTR | 30.0% | |
| TATGTCGACATTAGAGTTAA+TGG | + | chr1_1:51945759-51945778 | Msa0027590:CDS | 30.0% | |
| GCAAATATATGTGATGTGAT+AGG | + | chr1_1:51945934-51945953 | Msa0027590:intron | 30.0% | |
| CATCAAAATCACCATATATG+AGG | + | chr1_1:51946421-51946440 | Msa0027590:intron | 30.0% | |
| CTCTTCAAAAACCTCATATA+TGG | - | chr1_1:51946435-51946454 | None:intergenic | 30.0% | |
| TTAATTTCCAGAGAATCTCT+TGG | + | chr1_1:51946557-51946576 | Msa0027590:intron | 30.0% | |
| AATCTCTTGGATAGAATGTA+TGG | + | chr1_1:51946570-51946589 | Msa0027590:intron | 30.0% | |
| CAATATCTTTACAAGCAAAG+CGG | - | chr1_1:51946633-51946652 | None:intergenic | 30.0% | |
| !! | TGCTATTTATGTTTCAGGTT+AGG | + | chr1_1:51946673-51946692 | Msa0027590:intron | 30.0% |
| GATCAAGAATGATCAATTGA+AGG | + | chr1_1:51946779-51946798 | Msa0027590:CDS | 30.0% | |
| TTAACGACATCATATGGAAT+TGG | - | chr1_1:51946906-51946925 | None:intergenic | 30.0% | |
| AGATCATTAACGACATCATA+TGG | - | chr1_1:51946912-51946931 | None:intergenic | 30.0% | |
| GTGATTTATGAATATGCTTG+GGG | + | chr1_1:51947147-51947166 | Msa0027590:three_prime_UTR | 30.0% | |
| TAGACTAGGAGAAAGAAGAA+AGG | - | chr1_1:51945571-51945590 | None:intergenic | 35.0% | |
| ! | GTTTTCTTCTTCTGCTTCTA+GGG | - | chr1_1:51945625-51945644 | None:intergenic | 35.0% |
| ! | TGTTTTCTTCTTCTGCTTCT+AGG | - | chr1_1:51945626-51945645 | None:intergenic | 35.0% |
| ATGTGATGTGATAGGTGTTA+TGG | + | chr1_1:51945942-51945961 | Msa0027590:intron | 35.0% | |
| ACAAAAACTTAGGGCATGTT+TGG | - | chr1_1:51946255-51946274 | None:intergenic | 35.0% | |
| TCCAATTTCTCACTTGGAAT+TGG | + | chr1_1:51946376-51946395 | Msa0027590:intron | 35.0% | |
| TCCAATTCCAAGTGAGAAAT+TGG | - | chr1_1:51946380-51946399 | None:intergenic | 35.0% | |
| ATTCTATCCAAGAGATTCTC+TGG | - | chr1_1:51946567-51946586 | None:intergenic | 35.0% | |
| AGGTTAGGAACAAGATATTG+AGG | + | chr1_1:51946688-51946707 | Msa0027590:intron | 35.0% | |
| GATGTCGTTAATGATCTCAA+AGG | + | chr1_1:51946915-51946934 | Msa0027590:CDS | 35.0% | |
| AGACTGCATATTATTGTGCT+TGG | + | chr1_1:51946978-51946997 | Msa0027590:three_prime_UTR | 35.0% | |
| TAGACTAGGAGAAAGAAGAA+AGG | - | chr1_1:51945571-51945590 | None:intergenic | 35.0% | |
| ! | GTTTTCTTCTTCTGCTTCTA+GGG | - | chr1_1:51945625-51945644 | None:intergenic | 35.0% |
| ! | TGTTTTCTTCTTCTGCTTCT+AGG | - | chr1_1:51945626-51945645 | None:intergenic | 35.0% |
| ATGTGATGTGATAGGTGTTA+TGG | + | chr1_1:51945942-51945961 | Msa0027590:intron | 35.0% | |
| ACAAAAACTTAGGGCATGTT+TGG | - | chr1_1:51946255-51946274 | None:intergenic | 35.0% | |
| TCCAATTTCTCACTTGGAAT+TGG | + | chr1_1:51946376-51946395 | Msa0027590:intron | 35.0% | |
| TCCAATTCCAAGTGAGAAAT+TGG | - | chr1_1:51946380-51946399 | None:intergenic | 35.0% | |
| ATTCTATCCAAGAGATTCTC+TGG | - | chr1_1:51946567-51946586 | None:intergenic | 35.0% | |
| AGGTTAGGAACAAGATATTG+AGG | + | chr1_1:51946688-51946707 | Msa0027590:intron | 35.0% | |
| GATGTCGTTAATGATCTCAA+AGG | + | chr1_1:51946915-51946934 | Msa0027590:CDS | 35.0% | |
| AGACTGCATATTATTGTGCT+TGG | + | chr1_1:51946978-51946997 | Msa0027590:three_prime_UTR | 35.0% | |
| TAGTCTAGTGTGATTTCGAG+CGG | + | chr1_1:51945584-51945603 | Msa0027590:five_prime_UTR | 40.0% | |
| TACCTCAGGACTTATCACAT+CGG | + | chr1_1:51945732-51945751 | Msa0027590:CDS | 40.0% | |
| CAAGTCTCCAATTTCTCACT+TGG | + | chr1_1:51946370-51946389 | Msa0027590:intron | 40.0% | |
| GGAACAAGATATTGAGGAAG+AGG | + | chr1_1:51946694-51946713 | Msa0027590:CDS | 40.0% | |
| GTCGTTAATGATCTCAAAGG+AGG | + | chr1_1:51946918-51946937 | Msa0027590:CDS | 40.0% | |
| TCTTAAGCAGAAGATGTGCA+AGG | + | chr1_1:51947179-51947198 | Msa0027590:three_prime_UTR | 40.0% | |
| TAGTCTAGTGTGATTTCGAG+CGG | + | chr1_1:51945584-51945603 | Msa0027590:five_prime_UTR | 40.0% | |
| TACCTCAGGACTTATCACAT+CGG | + | chr1_1:51945732-51945751 | Msa0027590:CDS | 40.0% | |
| CAAGTCTCCAATTTCTCACT+TGG | + | chr1_1:51946370-51946389 | Msa0027590:intron | 40.0% | |
| GGAACAAGATATTGAGGAAG+AGG | + | chr1_1:51946694-51946713 | Msa0027590:CDS | 40.0% | |
| GTCGTTAATGATCTCAAAGG+AGG | + | chr1_1:51946918-51946937 | Msa0027590:CDS | 40.0% | |
| GCTCGAAATCACACTAGACT+AGG | - | chr1_1:51945585-51945604 | None:intergenic | 45.0% | |
| GAAGAAGAAAACATGCCTGC+AGG | + | chr1_1:51945633-51945652 | Msa0027590:exon | 45.0% | |
| AGAGAATGAATCTCTGGTGC+GGG | - | chr1_1:51945673-51945692 | None:intergenic | 45.0% | |
| GAGAGAATGAATCTCTGGTG+CGG | - | chr1_1:51945674-51945693 | None:intergenic | 45.0% | |
| ATTGTTCCCTTCTTGCGGAA+GGG | - | chr1_1:51945699-51945718 | None:intergenic | 45.0% | |
| TATTGTTCCCTTCTTGCGGA+AGG | - | chr1_1:51945700-51945719 | None:intergenic | 45.0% | |
| AGGCTATTGTTCCCTTCTTG+CGG | - | chr1_1:51945704-51945723 | None:intergenic | 45.0% | |
| GATGTGATAAGTCCTGAGGT+AGG | - | chr1_1:51945733-51945752 | None:intergenic | 45.0% | |
| GTTAATGGAGCTGTGCACAA+AGG | + | chr1_1:51945774-51945793 | Msa0027590:CDS | 45.0% | |
| ATGCCGCACAAATTCTACCA+CGG | + | chr1_1:51945798-51945817 | Msa0027590:CDS | 45.0% | |
| AAATTCTACCACGGTCGTAC+CGG | + | chr1_1:51945807-51945826 | Msa0027590:CDS | 45.0% | |
| !! | CTTGTTGACTTCGACACCAA+TGG | - | chr1_1:51945859-51945878 | None:intergenic | 45.0% |
| ATGGCATAACATGCTCCACT+CGG | - | chr1_1:51946728-51946747 | None:intergenic | 45.0% | |
| TGGAGCATGTTATGCCATCA+AGG | + | chr1_1:51946730-51946749 | Msa0027590:CDS | 45.0% | |
| GAATGATCAATTGAAGGCCG+AGG | + | chr1_1:51946785-51946804 | Msa0027590:CDS | 45.0% | |
| TCCACCATGAAACCAGGTTT+GGG | - | chr1_1:51946858-51946877 | None:intergenic | 45.0% | |
| TTCCACCATGAAACCAGGTT+TGG | - | chr1_1:51946859-51946878 | None:intergenic | 45.0% | |
| ! | AAACCTGGTTTCATGGTGGA+AGG | + | chr1_1:51946858-51946877 | Msa0027590:CDS | 45.0% |
| GCTCGAAATCACACTAGACT+AGG | - | chr1_1:51945585-51945604 | None:intergenic | 45.0% | |
| GAAGAAGAAAACATGCCTGC+AGG | + | chr1_1:51945633-51945652 | Msa0027590:exon | 45.0% | |
| AGAGAATGAATCTCTGGTGC+GGG | - | chr1_1:51945673-51945692 | None:intergenic | 45.0% | |
| GAGAGAATGAATCTCTGGTG+CGG | - | chr1_1:51945674-51945693 | None:intergenic | 45.0% | |
| ATTGTTCCCTTCTTGCGGAA+GGG | - | chr1_1:51945699-51945718 | None:intergenic | 45.0% | |
| TATTGTTCCCTTCTTGCGGA+AGG | - | chr1_1:51945700-51945719 | None:intergenic | 45.0% | |
| AGGCTATTGTTCCCTTCTTG+CGG | - | chr1_1:51945704-51945723 | None:intergenic | 45.0% | |
| GATGTGATAAGTCCTGAGGT+AGG | - | chr1_1:51945733-51945752 | None:intergenic | 45.0% | |
| GTTAATGGAGCTGTGCACAA+AGG | + | chr1_1:51945774-51945793 | Msa0027590:CDS | 45.0% | |
| ATGCCGCACAAATTCTACCA+CGG | + | chr1_1:51945798-51945817 | Msa0027590:CDS | 45.0% | |
| AAATTCTACCACGGTCGTAC+CGG | + | chr1_1:51945807-51945826 | Msa0027590:CDS | 45.0% | |
| !! | CTTGTTGACTTCGACACCAA+TGG | - | chr1_1:51945859-51945878 | None:intergenic | 45.0% |
| ATGGCATAACATGCTCCACT+CGG | - | chr1_1:51946728-51946747 | None:intergenic | 45.0% | |
| TGGAGCATGTTATGCCATCA+AGG | + | chr1_1:51946730-51946749 | Msa0027590:CDS | 45.0% | |
| GAATGATCAATTGAAGGCCG+AGG | + | chr1_1:51946785-51946804 | Msa0027590:CDS | 45.0% | |
| TCCACCATGAAACCAGGTTT+GGG | - | chr1_1:51946858-51946877 | None:intergenic | 45.0% | |
| TTCCACCATGAAACCAGGTT+TGG | - | chr1_1:51946859-51946878 | None:intergenic | 45.0% | |
| ! | AAACCTGGTTTCATGGTGGA+AGG | + | chr1_1:51946858-51946877 | Msa0027590:CDS | 45.0% |
| GAAAACATGCCTGCAGGTCA+TGG | + | chr1_1:51945639-51945658 | Msa0027590:exon | 50.0% | |
| GATCGTAAACCATGACCTGC+AGG | - | chr1_1:51945651-51945670 | None:intergenic | 50.0% | |
| GGGACGAGAGAATGAATCTC+TGG | - | chr1_1:51945679-51945698 | None:intergenic | 50.0% | |
| GTGATAAGTCCTGAGGTAGG+TGG | - | chr1_1:51945730-51945749 | None:intergenic | 50.0% | |
| CACCGATGTGATAAGTCCTG+AGG | - | chr1_1:51945737-51945756 | None:intergenic | 50.0% | |
| CGACCGTGGTAGAATTTGTG+CGG | - | chr1_1:51945804-51945823 | None:intergenic | 50.0% | |
| ! | GTGTCTGGAATGTCACCAAG+CGG | + | chr1_1:51945832-51945851 | Msa0027590:CDS | 50.0% |
| ! | TGTCTGGAATGTCACCAAGC+GGG | + | chr1_1:51945833-51945852 | Msa0027590:CDS | 50.0% |
| GAAGAGGATTCATGTCCGAG+TGG | + | chr1_1:51946710-51946729 | Msa0027590:CDS | 50.0% | |
| TATGCCATCAAGGTGCACTG+AGG | + | chr1_1:51946740-51946759 | Msa0027590:CDS | 50.0% | |
| AACTCCTCAGTGCACCTTGA+TGG | - | chr1_1:51946747-51946766 | None:intergenic | 50.0% | |
| GCACTGAGGAGTTCAGATTG+AGG | + | chr1_1:51946754-51946773 | Msa0027590:CDS | 50.0% | |
| TCAATTGAAGGCCGAGGCTA+AGG | + | chr1_1:51946791-51946810 | Msa0027590:CDS | 50.0% | |
| CCACCATGAAACCAGGTTTG+GGG | - | chr1_1:51946857-51946876 | None:intergenic | 50.0% | |
| !! | CATGGTGGAAGGTGCTACAT+TGG | + | chr1_1:51946869-51946888 | Msa0027590:CDS | 50.0% |
| GAAAACATGCCTGCAGGTCA+TGG | + | chr1_1:51945639-51945658 | Msa0027590:exon | 50.0% | |
| GATCGTAAACCATGACCTGC+AGG | - | chr1_1:51945651-51945670 | None:intergenic | 50.0% | |
| GGGACGAGAGAATGAATCTC+TGG | - | chr1_1:51945679-51945698 | None:intergenic | 50.0% | |
| GTGATAAGTCCTGAGGTAGG+TGG | - | chr1_1:51945730-51945749 | None:intergenic | 50.0% | |
| CACCGATGTGATAAGTCCTG+AGG | - | chr1_1:51945737-51945756 | None:intergenic | 50.0% | |
| CGACCGTGGTAGAATTTGTG+CGG | - | chr1_1:51945804-51945823 | None:intergenic | 50.0% | |
| ! | GTGTCTGGAATGTCACCAAG+CGG | + | chr1_1:51945832-51945851 | Msa0027590:CDS | 50.0% |
| ! | TGTCTGGAATGTCACCAAGC+GGG | + | chr1_1:51945833-51945852 | Msa0027590:CDS | 50.0% |
| GAAGAGGATTCATGTCCGAG+TGG | + | chr1_1:51946710-51946729 | Msa0027590:CDS | 50.0% | |
| TATGCCATCAAGGTGCACTG+AGG | + | chr1_1:51946740-51946759 | Msa0027590:CDS | 50.0% | |
| AACTCCTCAGTGCACCTTGA+TGG | - | chr1_1:51946747-51946766 | None:intergenic | 50.0% | |
| GCACTGAGGAGTTCAGATTG+AGG | + | chr1_1:51946754-51946773 | Msa0027590:CDS | 50.0% | |
| TCAATTGAAGGCCGAGGCTA+AGG | + | chr1_1:51946791-51946810 | Msa0027590:CDS | 50.0% | |
| CCACCATGAAACCAGGTTTG+GGG | - | chr1_1:51946857-51946876 | None:intergenic | 50.0% | |
| !! | CATGGTGGAAGGTGCTACAT+TGG | + | chr1_1:51946869-51946888 | Msa0027590:CDS | 50.0% |
| TCTCGTCCCTTCCGCAAGAA+GGG | + | chr1_1:51945690-51945709 | Msa0027590:CDS | 55.0% | |
| ! | TAGCCTTAGCCACCTACCTC+AGG | + | chr1_1:51945718-51945737 | Msa0027590:CDS | 55.0% |
| AGTCCTGAGGTAGGTGGCTA+AGG | - | chr1_1:51945724-51945743 | None:intergenic | 55.0% | |
| GGTGACATTCCAGACACGAC+CGG | - | chr1_1:51945829-51945848 | None:intergenic | 55.0% | |
| AATGTCACCAAGCGGGCCAT+TGG | + | chr1_1:51945840-51945859 | Msa0027590:CDS | 55.0% | |
| GGTGCTTATCACCTCTCCCT+TGG | - | chr1_1:51946817-51946836 | None:intergenic | 55.0% | |
| CCCCAAACCTGGTTTCATGG+TGG | + | chr1_1:51946854-51946873 | Msa0027590:CDS | 55.0% | |
| GCACCTTCCACCATGAAACC+AGG | - | chr1_1:51946864-51946883 | None:intergenic | 55.0% | |
| TCTCGTCCCTTCCGCAAGAA+GGG | + | chr1_1:51945690-51945709 | Msa0027590:CDS | 55.0% | |
| ! | TAGCCTTAGCCACCTACCTC+AGG | + | chr1_1:51945718-51945737 | Msa0027590:CDS | 55.0% |
| AGTCCTGAGGTAGGTGGCTA+AGG | - | chr1_1:51945724-51945743 | None:intergenic | 55.0% | |
| GGTGACATTCCAGACACGAC+CGG | - | chr1_1:51945829-51945848 | None:intergenic | 55.0% | |
| AATGTCACCAAGCGGGCCAT+TGG | + | chr1_1:51945840-51945859 | Msa0027590:CDS | 55.0% | |
| GGTGCTTATCACCTCTCCCT+TGG | - | chr1_1:51946817-51946836 | None:intergenic | 55.0% | |
| CCCCAAACCTGGTTTCATGG+TGG | + | chr1_1:51946854-51946873 | Msa0027590:CDS | 55.0% | |
| GCACCTTCCACCATGAAACC+AGG | - | chr1_1:51946864-51946883 | None:intergenic | 55.0% | |
| CTCTCGTCCCTTCCGCAAGA+AGG | + | chr1_1:51945689-51945708 | Msa0027590:CDS | 60.0% | |
| TTCGACACCAATGGCCCGCT+TGG | - | chr1_1:51945850-51945869 | None:intergenic | 60.0% | |
| AAGGCCGAGGCTAAGGCCAA+GGG | + | chr1_1:51946798-51946817 | Msa0027590:CDS | 60.0% | |
| !! | CTCTCCCTTGGCCTTAGCCT+CGG | - | chr1_1:51946805-51946824 | None:intergenic | 60.0% |
| AAGCACCAAGCGCAAGCCAG+AGG | + | chr1_1:51946830-51946849 | Msa0027590:CDS | 60.0% | |
| AGCACCAAGCGCAAGCCAGA+GGG | + | chr1_1:51946831-51946850 | Msa0027590:CDS | 60.0% | |
| ! | AAACCAGGTTTGGGGCCCTC+TGG | - | chr1_1:51946849-51946868 | None:intergenic | 60.0% |
| GGGCCCCAAACCTGGTTTCA+TGG | + | chr1_1:51946851-51946870 | Msa0027590:CDS | 60.0% | |
| CTCTCGTCCCTTCCGCAAGA+AGG | + | chr1_1:51945689-51945708 | Msa0027590:CDS | 60.0% | |
| TTCGACACCAATGGCCCGCT+TGG | - | chr1_1:51945850-51945869 | None:intergenic | 60.0% | |
| AAGGCCGAGGCTAAGGCCAA+GGG | + | chr1_1:51946798-51946817 | Msa0027590:CDS | 60.0% | |
| !! | CTCTCCCTTGGCCTTAGCCT+CGG | - | chr1_1:51946805-51946824 | None:intergenic | 60.0% |
| AAGCACCAAGCGCAAGCCAG+AGG | + | chr1_1:51946830-51946849 | Msa0027590:CDS | 60.0% | |
| AGCACCAAGCGCAAGCCAGA+GGG | + | chr1_1:51946831-51946850 | Msa0027590:CDS | 60.0% | |
| ! | AAACCAGGTTTGGGGCCCTC+TGG | - | chr1_1:51946849-51946868 | None:intergenic | 60.0% |
| GGGCCCCAAACCTGGTTTCA+TGG | + | chr1_1:51946851-51946870 | Msa0027590:CDS | 60.0% | |
| AGACACGACCGGTACGACCG+TGG | - | chr1_1:51945818-51945837 | None:intergenic | 65.0% | |
| ! | ACGGTCGTACCGGTCGTGTC+TGG | + | chr1_1:51945817-51945836 | Msa0027590:CDS | 65.0% |
| GAAGGCCGAGGCTAAGGCCA+AGG | + | chr1_1:51946797-51946816 | Msa0027590:CDS | 65.0% | |
| CGAGGCTAAGGCCAAGGGAG+AGG | + | chr1_1:51946803-51946822 | Msa0027590:CDS | 65.0% | |
| AAGCCAGAGGGCCCCAAACC+TGG | + | chr1_1:51946843-51946862 | Msa0027590:CDS | 65.0% | |
| AGACACGACCGGTACGACCG+TGG | - | chr1_1:51945818-51945837 | None:intergenic | 65.0% | |
| ! | ACGGTCGTACCGGTCGTGTC+TGG | + | chr1_1:51945817-51945836 | Msa0027590:CDS | 65.0% |
| GAAGGCCGAGGCTAAGGCCA+AGG | + | chr1_1:51946797-51946816 | Msa0027590:CDS | 65.0% | |
| CGAGGCTAAGGCCAAGGGAG+AGG | + | chr1_1:51946803-51946822 | Msa0027590:CDS | 65.0% | |
| AAGCCAGAGGGCCCCAAACC+TGG | + | chr1_1:51946843-51946862 | Msa0027590:CDS | 65.0% | |
| ! | GGGGCCCTCTGGCTTGCGCT+TGG | - | chr1_1:51946838-51946857 | None:intergenic | 75.0% |
| ! | GGGGCCCTCTGGCTTGCGCT+TGG | - | chr1_1:51946838-51946857 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 51945559 | 51947198 | 51945559 | ID=Msa0027590;Name=Msa0027590 |
| chr1_1 | mRNA | 51945559 | 51947198 | 51945559 | ID=Msa0027590-mRNA-1;Parent=Msa0027590;Name=Msa0027590-mRNA-1;_AED=0.00;_eAED=0.00;_QI=86|1|1|1|1|1|2|251|164 |
| chr1_1 | exon | 51945559 | 51945881 | 51945559 | ID=Msa0027590-mRNA-1:exon:15249;Parent=Msa0027590-mRNA-1 |
| chr1_1 | exon | 51946690 | 51947198 | 51946690 | ID=Msa0027590-mRNA-1:exon:15250;Parent=Msa0027590-mRNA-1 |
| chr1_1 | five_prime_UTR | 51945559 | 51945644 | 51945559 | ID=Msa0027590-mRNA-1:five_prime_utr;Parent=Msa0027590-mRNA-1 |
| chr1_1 | CDS | 51945645 | 51945881 | 51945645 | ID=Msa0027590-mRNA-1:cds;Parent=Msa0027590-mRNA-1 |
| chr1_1 | CDS | 51946690 | 51946947 | 51946690 | ID=Msa0027590-mRNA-1:cds;Parent=Msa0027590-mRNA-1 |
| chr1_1 | three_prime_UTR | 51946948 | 51947198 | 51946948 | ID=Msa0027590-mRNA-1:three_prime_utr;Parent=Msa0027590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
