Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235050 | TYH05148.1 | 98.837 | 86 | 1 | 0 | 1 | 86 | 49 | 134 | 4.45e-57 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235050 | sp|Q9M2F1|RS272_ARATH | 95.349 | 86 | 4 | 0 | 1 | 86 | 1 | 86 | 4.55e-58 | 175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235050 | I3S5S4 | 100.000 | 86 | 0 | 0 | 1 | 86 | 1 | 86 | 5.79e-57 | 179 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0235050 | 0.803136 | 4.026719e-49 | -8.615850e-47 |
| Msa0002430 | Msa0235050 | 0.824398 | 8.249684e-54 | -8.615850e-47 |
| Msa0027590 | Msa0235050 | 0.862150 | 6.213000e-64 | -8.615850e-47 |
| Msa0072570 | Msa0235050 | 0.821429 | 4.056570e-53 | -8.615850e-47 |
| Msa0075350 | Msa0235050 | 0.850479 | 1.654126e-60 | -8.615850e-47 |
| Msa0087910 | Msa0235050 | 0.850627 | 1.502480e-60 | -8.615850e-47 |
| Msa0114600 | Msa0235050 | 0.854137 | 1.503446e-61 | -8.615850e-47 |
| Msa0128330 | Msa0235050 | 0.843086 | 1.739827e-58 | -8.615850e-47 |
| Msa0134580 | Msa0235050 | 0.850623 | 1.506159e-60 | -8.615850e-47 |
| Msa0167860 | Msa0235050 | 0.859748 | 3.336677e-63 | -8.615850e-47 |
| Msa0174580 | Msa0235050 | 0.846460 | 2.142691e-59 | -8.615850e-47 |
| Msa0187810 | Msa0235050 | 0.841846 | 3.708545e-58 | -8.615850e-47 |
| Msa0191450 | Msa0235050 | 0.849995 | 2.260228e-60 | -8.615850e-47 |
| Msa0191550 | Msa0235050 | 0.864650 | 1.043853e-64 | -8.615850e-47 |
| Msa0192750 | Msa0235050 | 0.963934 | 1.070247e-122 | -8.615850e-47 |
| Msa0194940 | Msa0235050 | 0.845536 | 3.819291e-59 | -8.615850e-47 |
| Msa0210330 | Msa0235050 | 0.823114 | 1.648781e-53 | -8.615850e-47 |
| Msa0210360 | Msa0235050 | 0.804953 | 1.686523e-49 | -8.615850e-47 |
| Msa0222730 | Msa0235050 | 0.805081 | 1.585351e-49 | -8.615850e-47 |
| Msa0229150 | Msa0235050 | 0.814837 | 1.256954e-51 | -8.615850e-47 |
| Msa0235050 | Msa0277600 | 0.858819 | 6.341494e-63 | -8.615850e-47 |
| Msa0235050 | Msa0281330 | 0.864450 | 1.205755e-64 | -8.615850e-47 |
| Msa0235050 | Msa0281370 | 0.859184 | 4.929968e-63 | -8.615850e-47 |
| Msa0235050 | Msa0301220 | 0.824236 | 9.001934e-54 | -8.615850e-47 |
| Msa0235050 | Msa0303630 | 0.814856 | 1.244891e-51 | -8.615850e-47 |
| Msa0235050 | Msa0312210 | 0.809438 | 1.892291e-50 | -8.615850e-47 |
| Msa0235050 | Msa0313060 | 0.801914 | 7.191273e-49 | -8.615850e-47 |
| Msa0235050 | Msa0315430 | 0.863023 | 3.346523e-64 | -8.615850e-47 |
| Msa0235050 | Msa0369410 | 0.841481 | 4.629519e-58 | -8.615850e-47 |
| Msa0235050 | Msa0377370 | 0.820908 | 5.349740e-53 | -8.615850e-47 |
| Msa0235050 | Msa0377520 | 0.807909 | 4.014841e-50 | -8.615850e-47 |
| Msa0235050 | Msa0382960 | 0.801748 | 7.779338e-49 | -8.615850e-47 |
| Msa0235050 | Msa0419710 | 0.802857 | 4.597143e-49 | -8.615850e-47 |
| Msa0235050 | Msa0426090 | 0.842325 | 2.770794e-58 | -8.615850e-47 |
| Msa0235050 | Msa0426250 | 0.853533 | 2.244536e-61 | -8.615850e-47 |
| Msa0235050 | Msa0450150 | 0.811322 | 7.418858e-51 | -8.615850e-47 |
| Msa0235050 | Msa0463520 | 0.801431 | 9.031606e-49 | -8.615850e-47 |
| Msa0235050 | Msa0472480 | 0.834861 | 2.345809e-56 | -8.615850e-47 |
| Msa0235050 | Msa0481520 | 0.841410 | 4.831810e-58 | -8.615850e-47 |
| Msa0235050 | Msa0481850 | 0.839739 | 1.323142e-57 | -8.615850e-47 |
| Msa0235050 | Msa0517480 | 0.817025 | 4.084414e-52 | -8.615850e-47 |
| Msa0235050 | Msa0529900 | 0.801453 | 8.940840e-49 | -8.615850e-47 |
| Msa0235050 | Msa0547920 | 0.860341 | 2.209431e-63 | -8.615850e-47 |
| Msa0235050 | Msa0550420 | 0.859822 | 3.169075e-63 | -8.615850e-47 |
| Msa0235050 | Msa0550490 | 0.826119 | 3.230430e-54 | -8.615850e-47 |
| Msa0235050 | Msa0573550 | 0.847559 | 1.071087e-59 | -8.615850e-47 |
| Msa0235050 | Msa0579830 | 0.823024 | 1.730721e-53 | -8.615850e-47 |
| Msa0235050 | Msa0597240 | 0.825653 | 4.167836e-54 | -8.615850e-47 |
| Msa0235050 | Msa0602900 | 0.849125 | 3.953056e-60 | -8.615850e-47 |
| Msa0235050 | Msa0605890 | 0.908134 | 2.381982e-81 | -8.615850e-47 |
| Msa0235050 | Msa0619230 | 0.810801 | 9.623404e-51 | -8.615850e-47 |
| Msa0235050 | Msa0622230 | 0.835321 | 1.796232e-56 | -8.615850e-47 |
| Msa0235050 | Msa0643960 | 0.855006 | 8.424121e-62 | -8.615850e-47 |
| Msa0235050 | Msa0649890 | 0.803555 | 3.296716e-49 | -8.615850e-47 |
| Msa0235050 | Msa0686550 | 0.828995 | 6.593905e-55 | -8.615850e-47 |
| Msa0235050 | Msa0694400 | 0.856404 | 3.291322e-62 | -8.615850e-47 |
| Msa0235050 | Msa0704860 | 0.831326 | 1.778641e-55 | -8.615850e-47 |
| Msa0235050 | Msa0705800 | 0.835769 | 1.383394e-56 | -8.615850e-47 |
| Msa0235050 | Msa0741510 | 0.817754 | 2.798626e-52 | -8.615850e-47 |
| Msa0235050 | Msa0748350 | 0.836140 | 1.114354e-56 | -8.615850e-47 |
| Msa0235050 | Msa0749000 | 0.826255 | 2.998474e-54 | -8.615850e-47 |
| Msa0235050 | Msa0788380 | 0.818802 | 1.620786e-52 | -8.615850e-47 |
| Msa0235050 | Msa0796490 | 0.827113 | 1.871546e-54 | -8.615850e-47 |
| Msa0235050 | Msa0902220 | 0.831257 | 1.849790e-55 | -8.615850e-47 |
| Msa0235050 | Msa0927910 | 0.837787 | 4.229662e-57 | -8.615850e-47 |
| Msa0235050 | Msa0929700 | 0.867237 | 1.587007e-65 | -8.615850e-47 |
| Msa0235050 | Msa0930890 | 0.813214 | 2.867034e-51 | -8.615850e-47 |
| Msa0235050 | Msa0978470 | 0.820420 | 6.923348e-53 | -8.615850e-47 |
| Msa0235050 | Msa1037290 | 0.854118 | 1.522433e-61 | -8.615850e-47 |
| Msa0235050 | Msa1040160 | 0.841597 | 4.315208e-58 | -8.615850e-47 |
| Msa0235050 | Msa1041680 | 0.822388 | 2.433519e-53 | -8.615850e-47 |
| Msa0235050 | Msa1078980 | 0.802822 | 4.674888e-49 | -8.615850e-47 |
| Msa0235050 | Msa1079910 | 0.830215 | 3.329070e-55 | -8.615850e-47 |
| Msa0235050 | Msa1080350 | 0.832988 | 6.901276e-56 | -8.615850e-47 |
| Msa0235050 | Msa1083370 | 0.845550 | 3.786412e-59 | -8.615850e-47 |
| Msa0235050 | Msa1093500 | 0.801299 | 9.612740e-49 | -8.615850e-47 |
| Msa0235050 | Msa1096900 | 0.802246 | 6.143763e-49 | -8.615850e-47 |
| Msa0235050 | Msa1124850 | 0.831020 | 2.114899e-55 | -8.615850e-47 |
| Msa0235050 | Msa1125860 | 0.830326 | 3.127879e-55 | -8.615850e-47 |
| Msa0235050 | Msa1126060 | 0.834895 | 2.300007e-56 | -8.615850e-47 |
| Msa0235050 | Msa1126520 | 0.832757 | 7.879771e-56 | -8.615850e-47 |
| Msa0235050 | Msa1147670 | 0.814037 | 1.888754e-51 | -8.615850e-47 |
| Msa0235050 | Msa1164150 | 0.871844 | 5.013567e-67 | -8.615850e-47 |
| Msa0235050 | Msa1165640 | 0.835361 | 1.754614e-56 | -8.615850e-47 |
| Msa0235050 | Msa1166570 | 0.821388 | 4.147175e-53 | -8.615850e-47 |
| Msa0235050 | Msa1167550 | 0.815772 | 7.790640e-52 | -8.615850e-47 |
| Msa0235050 | Msa1169180 | 0.802619 | 5.147788e-49 | -8.615850e-47 |
| Msa0235050 | Msa1180000 | 0.825705 | 4.051964e-54 | -8.615850e-47 |
| Msa0235050 | Msa1186030 | 0.866894 | 2.041245e-65 | -8.615850e-47 |
| Msa0235050 | Msa1206240 | 0.818359 | 2.043029e-52 | -8.615850e-47 |
| Msa0235050 | Msa1208330 | 0.815046 | 1.129652e-51 | -8.615850e-47 |
| Msa0235050 | Msa1235950 | 0.822769 | 1.983815e-53 | -8.615850e-47 |
| Msa0235050 | Msa1235980 | 0.827017 | 1.972882e-54 | -8.615850e-47 |
| Msa0235050 | Msa1240270 | 0.861537 | 9.572657e-64 | -8.615850e-47 |
| Msa0235050 | Msa1257450 | 0.811699 | 6.144091e-51 | -8.615850e-47 |
| Msa0235050 | Msa1270640 | 0.824490 | 7.848848e-54 | -8.615850e-47 |
| Msa0235050 | Msa1270710 | 0.820068 | 8.339237e-53 | -8.615850e-47 |
| Msa0235050 | Msa1301640 | 0.817225 | 3.682982e-52 | -8.615850e-47 |
| Msa0235050 | Msa1311400 | 0.822883 | 1.866825e-53 | -8.615850e-47 |
| Msa0235050 | Msa1330730 | 0.812403 | 4.315623e-51 | -8.615850e-47 |
| Msa0235050 | Msa1341130 | 0.802543 | 5.338410e-49 | -8.615850e-47 |
| Msa0235050 | Msa1351020 | 0.828652 | 7.980647e-55 | -8.615850e-47 |
| Msa0235050 | Msa1351910 | 0.834153 | 3.532628e-56 | -8.615850e-47 |
| Msa0235050 | Msa1356790 | 0.805949 | 1.042594e-49 | -8.615850e-47 |
| Msa0235050 | Msa1362210 | 0.803215 | 3.877328e-49 | -8.615850e-47 |
| Msa0235050 | Msa1368920 | 0.854651 | 1.067912e-61 | -8.615850e-47 |
| Msa0235050 | Msa1385480 | 0.850290 | 1.868908e-60 | -8.615850e-47 |
| Msa0235050 | Msa1390760 | 0.808297 | 3.319445e-50 | -8.615850e-47 |
| Msa0235050 | Msa1397660 | 0.816055 | 6.735095e-52 | -8.615850e-47 |
| Msa0235050 | Msa1432310 | 0.813325 | 2.710790e-51 | -8.615850e-47 |
| Msa0235050 | Msa1441220 | -0.803923 | 2.765250e-49 | -8.615850e-47 |
| Msa0235050 | Msa1446410 | 0.830475 | 2.876848e-55 | -8.615850e-47 |
| Msa0235050 | Msa1463570 | 0.840715 | 7.357181e-58 | -8.615850e-47 |
| Msa0235050 | Msa1465700 | 0.811075 | 8.392173e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235050 | MtrunA17_Chr2g0283551 | 100.000 | 86 | 0 | 0 | 1 | 86 | 1 | 86 | 1.11e-60 | 179 |
| Msa0235050 | MtrunA17_Chr2g0291901 | 98.837 | 86 | 1 | 0 | 1 | 86 | 1 | 86 | 3.27e-60 | 177 |
| Msa0235050 | MtrunA17_Chr1g0210581 | 98.837 | 86 | 1 | 0 | 1 | 86 | 1 | 86 | 3.27e-60 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235050 | AT3G61110.1 | 95.349 | 86 | 4 | 0 | 1 | 86 | 1 | 86 | 4.63e-59 | 175 |
| Msa0235050 | AT2G45710.1 | 94.048 | 84 | 5 | 0 | 1 | 84 | 1 | 84 | 3.86e-56 | 167 |
| Msa0235050 | AT5G47930.1 | 95.238 | 84 | 4 | 0 | 1 | 84 | 1 | 84 | 1.13e-55 | 166 |
| Msa0235050 | AT3G61111.1 | 82.558 | 86 | 15 | 0 | 1 | 86 | 1 | 86 | 4.94e-49 | 150 |
| Msa0235050 | AT3G61111.2 | 80.952 | 42 | 8 | 0 | 1 | 42 | 1 | 42 | 1.06e-18 | 73.6 |
Find 37 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATGCTAGGTTAAAGTTT+TGG | 0.280121 | 2_2:+7803793 | None:intergenic |
| TCTATTTACTGTTGTGCATC+TGG | 0.299569 | 2_2:-7803772 | Msa0235050:three_prime_UTR |
| GTTGCAGAGTTGTGGTTGTT+AGG | 0.336511 | 2_2:-7803903 | Msa0235050:three_prime_UTR |
| TAGGAAGAAGGGAGACTAAA+TGG | 0.336934 | 2_2:-7803950 | Msa0235050:exon |
| TAACAGAAGGATGCTCCTTT+AGG | 0.360674 | 2_2:-7803969 | Msa0235050:CDS |
| TTTCTCTTCTCAAGCTCAGC+TGG | 0.378351 | 2_2:+7804500 | None:intergenic |
| ACCGTCTTGTGCCAGCCAAC+AGG | 0.416778 | 2_2:-7804006 | Msa0235050:CDS |
| TGTGGTTGTTAGGCTTAAGA+TGG | 0.436847 | 2_2:-7803893 | Msa0235050:three_prime_UTR |
| TTAGTCTCCCTTCTTCCTAA+AGG | 0.438236 | 2_2:+7803954 | None:intergenic |
| CTCTTCTCAAGCTCAGCTGG+TGG | 0.449604 | 2_2:+7804503 | None:intergenic |
| TGTCATCTTTACTTTGTCCA+TGG | 0.464001 | 2_2:-7803925 | Msa0235050:three_prime_UTR |
| TTGCACGGCCACCTGTTGGC+TGG | 0.466909 | 2_2:+7803995 | None:intergenic |
| CAACCACAACTCTGCAACCA+TGG | 0.471278 | 2_2:+7803908 | None:intergenic |
| AGCCAACAGGTGGCCGTGCA+AGG | 0.485723 | 2_2:-7803993 | Msa0235050:CDS |
| TCTTCTCAAGCTCAGCTGGT+GGG | 0.492805 | 2_2:+7804504 | None:intergenic |
| AGGATGCTCCTTTAGGAAGA+AGG | 0.507022 | 2_2:-7803962 | Msa0235050:CDS |
| GGATGCTCCTTTAGGAAGAA+GGG | 0.515173 | 2_2:-7803961 | Msa0235050:CDS |
| CTTACATATTGAAACAACCT+TGG | 0.524068 | 2_2:+7804323 | None:intergenic |
| TGTCCATGGTTGCAGAGTTG+TGG | 0.535567 | 2_2:-7803911 | Msa0235050:three_prime_UTR |
| AGCCTTGCACGGCCACCTGT+TGG | 0.536283 | 2_2:+7803991 | None:intergenic |
| CGTGTAATCTGTCTTGCGAT+TGG | 0.550265 | 2_2:-7803654 | Msa0235050:three_prime_UTR |
| TTGCAGGATGTAAAATGCCA+AGG | 0.553924 | 2_2:-7804340 | Msa0235050:intron |
| ATCCTTCTGTTAGCCTTGCA+CGG | 0.562687 | 2_2:+7803980 | None:intergenic |
| CAACAGTAAATAGAAATGCT+AGG | 0.572412 | 2_2:+7803781 | None:intergenic |
| ACCTGTTGGCTGGCACAAGA+CGG | 0.579670 | 2_2:+7804005 | None:intergenic |
| TAGCCACTCTCAAACCGTTG+TGG | 0.599496 | 2_2:-7804046 | Msa0235050:CDS |
| CAGGGCACTGACCATGTTGG+CGG | 0.602656 | 2_2:+7804782 | None:intergenic |
| GTCTTGTGCCAGCCAACAGG+TGG | 0.604328 | 2_2:-7804003 | Msa0235050:CDS |
| ACCATGTTGGCGGAAAATGT+TGG | 0.615242 | 2_2:+7804792 | None:intergenic |
| GGCCGTGCAAGGCTAACAGA+AGG | 0.622759 | 2_2:-7803982 | Msa0235050:CDS |
| TCTCAAACCGTTGTGGTGTG+CGG | 0.635679 | 2_2:-7804039 | Msa0235050:CDS |
| GAACAGGGCACTGACCATGT+TGG | 0.640363 | 2_2:+7804779 | None:intergenic |
| ACACCACAACGGTTTGAGAG+TGG | 0.647039 | 2_2:+7804043 | None:intergenic |
| CGGAAAATGTTGGAAAACAG+AGG | 0.656697 | 2_2:+7804802 | None:intergenic |
| TTGAGAGTGGCTAAAGACAG+TGG | 0.660753 | 2_2:+7804056 | None:intergenic |
| TCTTGCGATTGGTGTGTCCG+AGG | 0.681893 | 2_2:-7803643 | None:intergenic |
| ACAGTTACCGCACACCACAA+CGG | 0.704309 | 2_2:+7804032 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTTTTATTGTTTTTTT+TGG | - | chr2_2:7803785-7803804 | Msa0235050:three_prime_UTR | 10.0% |
| !!! | TTGATTTTTATTGTTTTTTT+TGG | - | chr2_2:7803785-7803804 | Msa0235050:three_prime_UTR | 10.0% |
| !!! | TTTTGCAAAAATATCATTTA+TGG | - | chr2_2:7803760-7803779 | Msa0235050:three_prime_UTR | 15.0% |
| !! | AAAAAGTTTATAAGCAAAAT+AGG | + | chr2_2:7804403-7804422 | None:intergenic | 15.0% |
| !!! | TGCTTATAAACTTTTTATTT+TGG | - | chr2_2:7804407-7804426 | Msa0235050:intron | 15.0% |
| !!! | TTTTGCAAAAATATCATTTA+TGG | - | chr2_2:7803760-7803779 | Msa0235050:three_prime_UTR | 15.0% |
| !! | AAAAAGTTTATAAGCAAAAT+AGG | + | chr2_2:7804403-7804422 | None:intergenic | 15.0% |
| !!! | TGCTTATAAACTTTTTATTT+TGG | - | chr2_2:7804407-7804426 | Msa0235050:intron | 15.0% |
| !!! | ATCTCCTTCTGAAATTTTTA+GGG | - | chr2_2:7803649-7803668 | Msa0235050:three_prime_UTR | 25.0% |
| ! | AAAACCCTAAAAATTTCAGA+AGG | + | chr2_2:7803656-7803675 | None:intergenic | 25.0% |
| !!! | TTCTGAAATTTTTAGGGTTT+TGG | - | chr2_2:7803655-7803674 | Msa0235050:three_prime_UTR | 25.0% |
| ! | CACAACATGAACATAAAATT+TGG | + | chr2_2:7803811-7803830 | None:intergenic | 25.0% |
| !!! | AATCTATTTGTTGTTTGTTC+AGG | - | chr2_2:7803939-7803958 | Msa0235050:exon | 25.0% |
| ! | AATACCATGAAAAAAGAGTT+TGG | + | chr2_2:7804048-7804067 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCTTTTATTGC+AGG | - | chr2_2:7804138-7804157 | Msa0235050:intron | 25.0% |
| ! | ATAATAGTGCTCAAATTCAT+TGG | - | chr2_2:7804240-7804259 | Msa0235050:intron | 25.0% |
| !!! | AAAGTTTTGGATAAGATTGT+GGG | + | chr2_2:7804691-7804710 | None:intergenic | 25.0% |
| !!! | TAAAGTTTTGGATAAGATTG+TGG | + | chr2_2:7804692-7804711 | None:intergenic | 25.0% |
| !!! | TCTTCATTATGTTTTGTTTG+TGG | - | chr2_2:7804817-7804836 | Msa0235050:five_prime_UTR | 25.0% |
| !!! | ATCTCCTTCTGAAATTTTTA+GGG | - | chr2_2:7803649-7803668 | Msa0235050:three_prime_UTR | 25.0% |
| ! | AAAACCCTAAAAATTTCAGA+AGG | + | chr2_2:7803656-7803675 | None:intergenic | 25.0% |
| !!! | TTCTGAAATTTTTAGGGTTT+TGG | - | chr2_2:7803655-7803674 | Msa0235050:three_prime_UTR | 25.0% |
| ! | CACAACATGAACATAAAATT+TGG | + | chr2_2:7803811-7803830 | None:intergenic | 25.0% |
| !!! | AATCTATTTGTTGTTTGTTC+AGG | - | chr2_2:7803939-7803958 | Msa0235050:exon | 25.0% |
| ! | AATACCATGAAAAAAGAGTT+TGG | + | chr2_2:7804048-7804067 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCTTTTATTGC+AGG | - | chr2_2:7804138-7804157 | Msa0235050:intron | 25.0% |
| ! | ATAATAGTGCTCAAATTCAT+TGG | - | chr2_2:7804240-7804259 | Msa0235050:intron | 25.0% |
| !!! | AAAGTTTTGGATAAGATTGT+GGG | + | chr2_2:7804691-7804710 | None:intergenic | 25.0% |
| !!! | TAAAGTTTTGGATAAGATTG+TGG | + | chr2_2:7804692-7804711 | None:intergenic | 25.0% |
| !!! | TCTTCATTATGTTTTGTTTG+TGG | - | chr2_2:7804817-7804836 | Msa0235050:five_prime_UTR | 25.0% |
| !!! | CATCTCCTTCTGAAATTTTT+AGG | - | chr2_2:7803648-7803667 | Msa0235050:three_prime_UTR | 30.0% |
| CAAATTCAGATCTGAAAAAG+AGG | + | chr2_2:7803740-7803759 | None:intergenic | 30.0% | |
| ! | TCATGTTGTGTTTTCATAAC+AGG | - | chr2_2:7803821-7803840 | Msa0235050:three_prime_UTR | 30.0% |
| CTTACATATTGAAACAACCT+TGG | + | chr2_2:7804174-7804193 | None:intergenic | 30.0% | |
| ! | GGTTGTTTCAATATGTAAGT+TGG | - | chr2_2:7804175-7804194 | Msa0235050:intron | 30.0% |
| ! | GAAATGCTAGGTTAAAGTTT+TGG | + | chr2_2:7804704-7804723 | None:intergenic | 30.0% |
| CAACAGTAAATAGAAATGCT+AGG | + | chr2_2:7804716-7804735 | None:intergenic | 30.0% | |
| !!! | CATCTCCTTCTGAAATTTTT+AGG | - | chr2_2:7803648-7803667 | Msa0235050:three_prime_UTR | 30.0% |
| CAAATTCAGATCTGAAAAAG+AGG | + | chr2_2:7803740-7803759 | None:intergenic | 30.0% | |
| ! | TCATGTTGTGTTTTCATAAC+AGG | - | chr2_2:7803821-7803840 | Msa0235050:three_prime_UTR | 30.0% |
| CTTACATATTGAAACAACCT+TGG | + | chr2_2:7804174-7804193 | None:intergenic | 30.0% | |
| ! | GGTTGTTTCAATATGTAAGT+TGG | - | chr2_2:7804175-7804194 | Msa0235050:intron | 30.0% |
| ! | GAAATGCTAGGTTAAAGTTT+TGG | + | chr2_2:7804704-7804723 | None:intergenic | 30.0% |
| CAACAGTAAATAGAAATGCT+AGG | + | chr2_2:7804716-7804735 | None:intergenic | 30.0% | |
| AGATCTGAAAAAGAGGAACA+GGG | + | chr2_2:7803733-7803752 | None:intergenic | 35.0% | |
| !!! | GTCACCAAACTCTTTTTTCA+TGG | - | chr2_2:7804041-7804060 | Msa0235050:CDS | 35.0% |
| TGTCATCTTTACTTTGTCCA+TGG | - | chr2_2:7804569-7804588 | Msa0235050:intron | 35.0% | |
| TCTATTTACTGTTGTGCATC+TGG | - | chr2_2:7804722-7804741 | Msa0235050:intron | 35.0% | |
| AGATCTGAAAAAGAGGAACA+GGG | + | chr2_2:7803733-7803752 | None:intergenic | 35.0% | |
| !!! | GTCACCAAACTCTTTTTTCA+TGG | - | chr2_2:7804041-7804060 | Msa0235050:CDS | 35.0% |
| TGTCATCTTTACTTTGTCCA+TGG | - | chr2_2:7804569-7804588 | Msa0235050:intron | 35.0% | |
| TCTATTTACTGTTGTGCATC+TGG | - | chr2_2:7804722-7804741 | Msa0235050:intron | 35.0% | |
| CGGAAAATGTTGGAAAACAG+AGG | + | chr2_2:7803695-7803714 | None:intergenic | 40.0% | |
| CAGATCTGAAAAAGAGGAAC+AGG | + | chr2_2:7803734-7803753 | None:intergenic | 40.0% | |
| TTGCAGGATGTAAAATGCCA+AGG | - | chr2_2:7804154-7804173 | Msa0235050:intron | 40.0% | |
| TAACAGAAGGATGCTCCTTT+AGG | - | chr2_2:7804525-7804544 | Msa0235050:CDS | 40.0% | |
| TTAGTCTCCCTTCTTCCTAA+AGG | + | chr2_2:7804543-7804562 | None:intergenic | 40.0% | |
| TAGGAAGAAGGGAGACTAAA+TGG | - | chr2_2:7804544-7804563 | Msa0235050:intron | 40.0% | |
| TGTGGTTGTTAGGCTTAAGA+TGG | - | chr2_2:7804601-7804620 | Msa0235050:intron | 40.0% | |
| CGGAAAATGTTGGAAAACAG+AGG | + | chr2_2:7803695-7803714 | None:intergenic | 40.0% | |
| CAGATCTGAAAAAGAGGAAC+AGG | + | chr2_2:7803734-7803753 | None:intergenic | 40.0% | |
| TTGCAGGATGTAAAATGCCA+AGG | - | chr2_2:7804154-7804173 | Msa0235050:intron | 40.0% | |
| TAACAGAAGGATGCTCCTTT+AGG | - | chr2_2:7804525-7804544 | Msa0235050:CDS | 40.0% | |
| TTAGTCTCCCTTCTTCCTAA+AGG | + | chr2_2:7804543-7804562 | None:intergenic | 40.0% | |
| TAGGAAGAAGGGAGACTAAA+TGG | - | chr2_2:7804544-7804563 | Msa0235050:intron | 40.0% | |
| TGTGGTTGTTAGGCTTAAGA+TGG | - | chr2_2:7804601-7804620 | Msa0235050:intron | 40.0% | |
| ! | TCCAACATTTTCCGCCAACA+TGG | - | chr2_2:7803701-7803720 | Msa0235050:three_prime_UTR | 45.0% |
| ACCATGTTGGCGGAAAATGT+TGG | + | chr2_2:7803705-7803724 | None:intergenic | 45.0% | |
| TTTCTCTTCTCAAGCTCAGC+TGG | + | chr2_2:7803997-7804016 | None:intergenic | 45.0% | |
| TTGAGAGTGGCTAAAGACAG+TGG | + | chr2_2:7804441-7804460 | None:intergenic | 45.0% | |
| !! | ATCCTTCTGTTAGCCTTGCA+CGG | + | chr2_2:7804517-7804536 | None:intergenic | 45.0% |
| ! | AGGATGCTCCTTTAGGAAGA+AGG | - | chr2_2:7804532-7804551 | Msa0235050:CDS | 45.0% |
| ! | GGATGCTCCTTTAGGAAGAA+GGG | - | chr2_2:7804533-7804552 | Msa0235050:CDS | 45.0% |
| GTTGCAGAGTTGTGGTTGTT+AGG | - | chr2_2:7804591-7804610 | Msa0235050:intron | 45.0% | |
| CGTGTAATCTGTCTTGCGAT+TGG | - | chr2_2:7804840-7804859 | Msa0235050:five_prime_UTR | 45.0% | |
| ! | TCCAACATTTTCCGCCAACA+TGG | - | chr2_2:7803701-7803720 | Msa0235050:three_prime_UTR | 45.0% |
| ACCATGTTGGCGGAAAATGT+TGG | + | chr2_2:7803705-7803724 | None:intergenic | 45.0% | |
| TTTCTCTTCTCAAGCTCAGC+TGG | + | chr2_2:7803997-7804016 | None:intergenic | 45.0% | |
| TTGAGAGTGGCTAAAGACAG+TGG | + | chr2_2:7804441-7804460 | None:intergenic | 45.0% | |
| !! | ATCCTTCTGTTAGCCTTGCA+CGG | + | chr2_2:7804517-7804536 | None:intergenic | 45.0% |
| ! | AGGATGCTCCTTTAGGAAGA+AGG | - | chr2_2:7804532-7804551 | Msa0235050:CDS | 45.0% |
| ! | GGATGCTCCTTTAGGAAGAA+GGG | - | chr2_2:7804533-7804552 | Msa0235050:CDS | 45.0% |
| GTTGCAGAGTTGTGGTTGTT+AGG | - | chr2_2:7804591-7804610 | Msa0235050:intron | 45.0% | |
| CGTGTAATCTGTCTTGCGAT+TGG | - | chr2_2:7804840-7804859 | Msa0235050:five_prime_UTR | 45.0% | |
| TCTTCTCAAGCTCAGCTGGT+GGG | + | chr2_2:7803993-7804012 | None:intergenic | 50.0% | |
| TAGCCACTCTCAAACCGTTG+TGG | - | chr2_2:7804448-7804467 | Msa0235050:intron | 50.0% | |
| ACACCACAACGGTTTGAGAG+TGG | + | chr2_2:7804454-7804473 | None:intergenic | 50.0% | |
| TCTCAAACCGTTGTGGTGTG+CGG | - | chr2_2:7804455-7804474 | Msa0235050:CDS | 50.0% | |
| ACAGTTACCGCACACCACAA+CGG | + | chr2_2:7804465-7804484 | None:intergenic | 50.0% | |
| TGTCCATGGTTGCAGAGTTG+TGG | - | chr2_2:7804583-7804602 | Msa0235050:intron | 50.0% | |
| CAACCACAACTCTGCAACCA+TGG | + | chr2_2:7804589-7804608 | None:intergenic | 50.0% | |
| TCTTCTCAAGCTCAGCTGGT+GGG | + | chr2_2:7803993-7804012 | None:intergenic | 50.0% | |
| TAGCCACTCTCAAACCGTTG+TGG | - | chr2_2:7804448-7804467 | Msa0235050:intron | 50.0% | |
| ACACCACAACGGTTTGAGAG+TGG | + | chr2_2:7804454-7804473 | None:intergenic | 50.0% | |
| TCTCAAACCGTTGTGGTGTG+CGG | - | chr2_2:7804455-7804474 | Msa0235050:CDS | 50.0% | |
| ACAGTTACCGCACACCACAA+CGG | + | chr2_2:7804465-7804484 | None:intergenic | 50.0% | |
| TGTCCATGGTTGCAGAGTTG+TGG | - | chr2_2:7804583-7804602 | Msa0235050:intron | 50.0% | |
| CAACCACAACTCTGCAACCA+TGG | + | chr2_2:7804589-7804608 | None:intergenic | 50.0% | |
| !! | GAACAGGGCACTGACCATGT+TGG | + | chr2_2:7803718-7803737 | None:intergenic | 55.0% |
| CTCTTCTCAAGCTCAGCTGG+TGG | + | chr2_2:7803994-7804013 | None:intergenic | 55.0% | |
| ! | ACCTGTTGGCTGGCACAAGA+CGG | + | chr2_2:7804492-7804511 | None:intergenic | 55.0% |
| !! | GAACAGGGCACTGACCATGT+TGG | + | chr2_2:7803718-7803737 | None:intergenic | 55.0% |
| CTCTTCTCAAGCTCAGCTGG+TGG | + | chr2_2:7803994-7804013 | None:intergenic | 55.0% | |
| ! | ACCTGTTGGCTGGCACAAGA+CGG | + | chr2_2:7804492-7804511 | None:intergenic | 55.0% |
| !! | CAGGGCACTGACCATGTTGG+CGG | + | chr2_2:7803715-7803734 | None:intergenic | 60.0% |
| ACCGTCTTGTGCCAGCCAAC+AGG | - | chr2_2:7804488-7804507 | Msa0235050:CDS | 60.0% | |
| GTCTTGTGCCAGCCAACAGG+TGG | - | chr2_2:7804491-7804510 | Msa0235050:CDS | 60.0% | |
| GGCCGTGCAAGGCTAACAGA+AGG | - | chr2_2:7804512-7804531 | Msa0235050:CDS | 60.0% | |
| !! | CAGGGCACTGACCATGTTGG+CGG | + | chr2_2:7803715-7803734 | None:intergenic | 60.0% |
| ACCGTCTTGTGCCAGCCAAC+AGG | - | chr2_2:7804488-7804507 | Msa0235050:CDS | 60.0% | |
| GTCTTGTGCCAGCCAACAGG+TGG | - | chr2_2:7804491-7804510 | Msa0235050:CDS | 60.0% | |
| GGCCGTGCAAGGCTAACAGA+AGG | - | chr2_2:7804512-7804531 | Msa0235050:CDS | 60.0% | |
| TTGCACGGCCACCTGTTGGC+TGG | + | chr2_2:7804502-7804521 | None:intergenic | 65.0% | |
| AGCCAACAGGTGGCCGTGCA+AGG | - | chr2_2:7804501-7804520 | Msa0235050:CDS | 65.0% | |
| AGCCTTGCACGGCCACCTGT+TGG | + | chr2_2:7804506-7804525 | None:intergenic | 65.0% | |
| TTGCACGGCCACCTGTTGGC+TGG | + | chr2_2:7804502-7804521 | None:intergenic | 65.0% | |
| AGCCAACAGGTGGCCGTGCA+AGG | - | chr2_2:7804501-7804520 | Msa0235050:CDS | 65.0% | |
| AGCCTTGCACGGCCACCTGT+TGG | + | chr2_2:7804506-7804525 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 7803644 | 7804872 | 7803644 | ID=Msa0235050;Name=Msa0235050 |
| chr2_2 | mRNA | 7803644 | 7804872 | 7803644 | ID=Msa0235050-mRNA-1;Parent=Msa0235050;Name=Msa0235050-mRNA-1;_AED=0.03;_eAED=0.03;_QI=76|1|1|1|1|1|4|310|86 |
| chr2_2 | exon | 7803644 | 7804080 | 7803644 | ID=Msa0235050-mRNA-1:exon:3450;Parent=Msa0235050-mRNA-1 |
| chr2_2 | exon | 7804328 | 7804356 | 7804328 | ID=Msa0235050-mRNA-1:exon:3449;Parent=Msa0235050-mRNA-1 |
| chr2_2 | exon | 7804454 | 7804555 | 7804454 | ID=Msa0235050-mRNA-1:exon:3448;Parent=Msa0235050-mRNA-1 |
| chr2_2 | exon | 7804794 | 7804872 | 7804794 | ID=Msa0235050-mRNA-1:exon:3447;Parent=Msa0235050-mRNA-1 |
| chr2_2 | five_prime_UTR | 7804797 | 7804872 | 7804797 | ID=Msa0235050-mRNA-1:five_prime_utr;Parent=Msa0235050-mRNA-1 |
| chr2_2 | CDS | 7804794 | 7804796 | 7804794 | ID=Msa0235050-mRNA-1:cds;Parent=Msa0235050-mRNA-1 |
| chr2_2 | CDS | 7804454 | 7804555 | 7804454 | ID=Msa0235050-mRNA-1:cds;Parent=Msa0235050-mRNA-1 |
| chr2_2 | CDS | 7804328 | 7804356 | 7804328 | ID=Msa0235050-mRNA-1:cds;Parent=Msa0235050-mRNA-1 |
| chr2_2 | CDS | 7803954 | 7804080 | 7803954 | ID=Msa0235050-mRNA-1:cds;Parent=Msa0235050-mRNA-1 |
| chr2_2 | three_prime_UTR | 7803644 | 7803953 | 7803644 | ID=Msa0235050-mRNA-1:three_prime_utr;Parent=Msa0235050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
