AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0075350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075350 MtrunA17_Chr1g0183851 100.000 164 0 0 1 164 1 164 1.17e-120 337
Msa0075350 MtrunA17_Chr7g0268461 99.390 164 1 0 1 164 1 164 1.81e-120 336
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075350 AT1G09590.1 81.098 164 31 0 1 164 1 164 3.58e-101 288
Msa0075350 AT1G09690.1 81.098 164 31 0 1 164 1 164 3.58e-101 288
Msa0075350 AT1G57660.1 80.488 164 32 0 1 164 1 164 1.08e-100 286
Msa0075350 AT1G57860.1 80.488 164 32 0 1 164 1 164 1.08e-100 286

Find 74 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTTCTGCTTCTAGTCT+AGG 0.293767 1_2:-50502956 None:intergenic
TATGTCGACATTAGAGTTAA+TGG 0.335175 1_2:+50503097 Msa0075350:CDS
TCCACCATGAAACCAGGTTT+GGG 0.345744 1_2:-50504242 None:intergenic
AACTCCTCAGTGCACCTTGA+TGG 0.353770 1_2:-50504131 None:intergenic
AGATCATTAACGACATCATA+TGG 0.366035 1_2:-50504296 None:intergenic
GGGGCCCTCTGGCTTGCGCT+TGG 0.369033 1_2:-50504222 None:intergenic
TTCCACCATGAAACCAGGTT+TGG 0.392778 1_2:-50504243 None:intergenic
GGGCCCCAAACCTGGTTTCA+TGG 0.399375 1_2:+50504238 Msa0075350:CDS
CTTCTTCTGCTTCTAGTCTA+GGG 0.402045 1_2:-50502955 None:intergenic
TTAACGACATCATATGGAAT+TGG 0.408404 1_2:-50504290 None:intergenic
CTTGTTGACTTCGACACCAA+TGG 0.410846 1_2:-50503194 None:intergenic
AAACCAGGTTTGGGGCCCTC+TGG 0.418683 1_2:-50504233 None:intergenic
CTGATATTTCATAAATTTGA+AGG 0.428221 1_2:-50504431 None:intergenic
GGAACAAGATATTGAGGAAG+AGG 0.429842 1_2:+50504081 Msa0075350:CDS
ACGGTCGTACCGGTCGTGTC+TGG 0.430669 1_2:+50503155 Msa0075350:CDS
AAGCCAGAGGGCCCCAAACC+TGG 0.445982 1_2:+50504230 Msa0075350:CDS
CTCTCCCTTGGCCTTAGCCT+CGG 0.448320 1_2:-50504189 None:intergenic
GGTGCTTATCACCTCTCCCT+TGG 0.453810 1_2:-50504201 None:intergenic
CTCTCGTCCCTTCCGCAAGA+AGG 0.461875 1_2:+50503027 Msa0075350:CDS
TGTGATTTATGAATATGCTT+GGG 0.463996 1_2:+50504533 Msa0075350:three_prime_UTR
AGACTGCATATTATTGTGCT+TGG 0.476338 1_2:+50504365 Msa0075350:three_prime_UTR
TTCGACACCAATGGCCCGCT+TGG 0.477602 1_2:-50503185 None:intergenic
AGTCCTGAGGTAGGTGGCTA+AGG 0.478683 1_2:-50503059 None:intergenic
CGAGGCTAAGGCCAAGGGAG+AGG 0.486454 1_2:+50504190 Msa0075350:CDS
GGGACGAGAGAATGAATCTC+TGG 0.494698 1_2:-50503014 None:intergenic
AGCACCAAGCGCAAGCCAGA+GGG 0.504695 1_2:+50504218 Msa0075350:CDS
TATTGTTCCCTTCTTGCGGA+AGG 0.508429 1_2:-50503035 None:intergenic
TCAATTGAAGGCCGAGGCTA+AGG 0.510816 1_2:+50504178 Msa0075350:CDS
ATGTGATTTATGAATATGCT+TGG 0.513941 1_2:+50504532 Msa0075350:three_prime_UTR
AATGTCACCAAGCGGGCCAT+TGG 0.521717 1_2:+50503178 Msa0075350:CDS
AAATTCTACCACGGTCGTAC+CGG 0.524822 1_2:+50503145 Msa0075350:CDS
GATCAAGAATGATCAATTGA+AGG 0.525684 1_2:+50504166 Msa0075350:CDS
GAAAACATGCCTGCAGGTCA+TGG 0.528675 1_2:+50502977 Msa0075350:exon
GATCGTAAACCATGACCTGC+AGG 0.529368 1_2:-50502986 None:intergenic
AGGTTAGGAACAAGATATTG+AGG 0.530172 1_2:+50504075 Msa0075350:intron
CATGGTGGAAGGTGCTACAT+TGG 0.534415 1_2:+50504256 Msa0075350:CDS
ATTGTTCCCTTCTTGCGGAA+GGG 0.538504 1_2:-50503034 None:intergenic
AGAGAATGAATCTCTGGTGC+GGG 0.544173 1_2:-50503008 None:intergenic
TCTCGTCCCTTCCGCAAGAA+GGG 0.545142 1_2:+50503028 Msa0075350:CDS
TAGCCTTAGCCACCTACCTC+AGG 0.549870 1_2:+50503056 Msa0075350:CDS
GAATGATCAATTGAAGGCCG+AGG 0.551548 1_2:+50504172 Msa0075350:CDS
AGGCTATTGTTCCCTTCTTG+CGG 0.554250 1_2:-50503039 None:intergenic
AAGCACCAAGCGCAAGCCAG+AGG 0.557087 1_2:+50504217 Msa0075350:CDS
GAAGAAGAAAACATGCCTGC+AGG 0.557795 1_2:+50502971 Msa0075350:exon
TGGAGCATGTTATGCCATCA+AGG 0.559210 1_2:+50504117 Msa0075350:CDS
GCTCGAAATCACACTAGACT+AGG 0.560183 1_2:-50502915 None:intergenic
GAAGGCCGAGGCTAAGGCCA+AGG 0.560874 1_2:+50504184 Msa0075350:CDS
TGATATTTCATAAATTTGAA+GGG 0.567429 1_2:-50504430 None:intergenic
TGTCTGGAATGTCACCAAGC+GGG 0.572072 1_2:+50503171 Msa0075350:CDS
GCACCTTCCACCATGAAACC+AGG 0.576804 1_2:-50504248 None:intergenic
TAGACTAGGAGAAAGAAGAA+AGG 0.580635 1_2:-50502901 None:intergenic
AAACCTGGTTTCATGGTGGA+AGG 0.589005 1_2:+50504245 Msa0075350:CDS
GCACTGAGGAGTTCAGATTG+AGG 0.599052 1_2:+50504141 Msa0075350:CDS
GGTGACATTCCAGACACGAC+CGG 0.600537 1_2:-50503164 None:intergenic
GTGATTTATGAATATGCTTG+GGG 0.615011 1_2:+50504534 Msa0075350:three_prime_UTR
ATGGCATAACATGCTCCACT+CGG 0.618716 1_2:-50504112 None:intergenic
GAGAGAATGAATCTCTGGTG+CGG 0.619187 1_2:-50503009 None:intergenic
GATGTCGTTAATGATCTCAA+AGG 0.621805 1_2:+50504302 Msa0075350:CDS
TAGTCTAGTGTGATTTCGAG+CGG 0.627394 1_2:+50502917 Msa0075350:five_prime_UTR
GTTAATGGAGCTGTGCACAA+AGG 0.632022 1_2:+50503112 Msa0075350:CDS
GTCGTTAATGATCTCAAAGG+AGG 0.636972 1_2:+50504305 Msa0075350:CDS
AAGGCCGAGGCTAAGGCCAA+GGG 0.643263 1_2:+50504185 Msa0075350:CDS
CCACCATGAAACCAGGTTTG+GGG 0.653619 1_2:-50504241 None:intergenic
GTGTCTGGAATGTCACCAAG+CGG 0.655012 1_2:+50503170 Msa0075350:CDS
GTGATAAGTCCTGAGGTAGG+TGG 0.662852 1_2:-50503065 None:intergenic
CGACCGTGGTAGAATTTGTG+CGG 0.677873 1_2:-50503139 None:intergenic
CACCGATGTGATAAGTCCTG+AGG 0.683027 1_2:-50503072 None:intergenic
GATGTGATAAGTCCTGAGGT+AGG 0.683685 1_2:-50503068 None:intergenic
CCCCAAACCTGGTTTCATGG+TGG 0.684233 1_2:+50504241 Msa0075350:CDS
AGACACGACCGGTACGACCG+TGG 0.690324 1_2:-50503153 None:intergenic
GAAGAGGATTCATGTCCGAG+TGG 0.705446 1_2:+50504097 Msa0075350:CDS
TACCTCAGGACTTATCACAT+CGG 0.727991 1_2:+50503070 Msa0075350:CDS
ATGCCGCACAAATTCTACCA+CGG 0.741255 1_2:+50503136 Msa0075350:CDS
TATGCCATCAAGGTGCACTG+AGG 0.765204 1_2:+50504127 Msa0075350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATATTTCATAAATTTGAA+GGG - chr1_2:50504433-50504452 None:intergenic 15.0%
!! TGATATTTCATAAATTTGAA+GGG - chr1_2:50504433-50504452 None:intergenic 15.0%
!!! ACATAAATGAAAGTATTTGT+AGG - chr1_2:50503737-50503756 None:intergenic 20.0%
!!! GAAGAATTTTGTGTTAAATA+TGG - chr1_2:50503880-50503899 None:intergenic 20.0%
!!! CAAAATTCTTCTAAGTTTTT+AGG + chr1_2:50503889-50503908 Msa0075350:intron 20.0%
!! CTGATATTTCATAAATTTGA+AGG - chr1_2:50504434-50504453 None:intergenic 20.0%
!!! ACATAAATGAAAGTATTTGT+AGG - chr1_2:50503737-50503756 None:intergenic 20.0%
!!! GAAGAATTTTGTGTTAAATA+TGG - chr1_2:50503880-50503899 None:intergenic 20.0%
!!! CAAAATTCTTCTAAGTTTTT+AGG + chr1_2:50503889-50503908 Msa0075350:intron 20.0%
!! CTGATATTTCATAAATTTGA+AGG - chr1_2:50504434-50504453 None:intergenic 20.0%
! ACAAATATATGTGATGTGAT+AGG + chr1_2:50503272-50503291 Msa0075350:intron 25.0%
! TTTGCTTTAGTAGTATATTC+AGG + chr1_2:50503380-50503399 Msa0075350:intron 25.0%
! TCAAACAACAAAATGAATCA+AGG - chr1_2:50503458-50503477 None:intergenic 25.0%
!!! TTGTTTGAGTTTTGTTTAGA+TGG + chr1_2:50503470-50503489 Msa0075350:intron 25.0%
! AGTTGGAAAACAAAAACTTA+GGG - chr1_2:50503651-50503670 None:intergenic 25.0%
! AAGTTGGAAAACAAAAACTT+AGG - chr1_2:50503652-50503671 None:intergenic 25.0%
!!! ATTCGAGTGTTTTAATAAGT+TGG - chr1_2:50503668-50503687 None:intergenic 25.0%
! AGGAACTAAACATGATAAAA+TGG - chr1_2:50503717-50503736 None:intergenic 25.0%
!! ACTTGACATGATGTTTTATA+TGG + chr1_2:50503847-50503866 Msa0075350:intron 25.0%
!!! TTCTAAGTTTTTAGGTCTTA+AGG + chr1_2:50503897-50503916 Msa0075350:intron 25.0%
!!! AATGTTGCTATTTATGTTTC+AGG + chr1_2:50504055-50504074 Msa0075350:intron 25.0%
! ATGTGATTTATGAATATGCT+TGG + chr1_2:50504532-50504551 Msa0075350:three_prime_UTR 25.0%
! TGTGATTTATGAATATGCTT+GGG + chr1_2:50504533-50504552 Msa0075350:three_prime_UTR 25.0%
! ACAAATATATGTGATGTGAT+AGG + chr1_2:50503272-50503291 Msa0075350:intron 25.0%
! TTTGCTTTAGTAGTATATTC+AGG + chr1_2:50503380-50503399 Msa0075350:intron 25.0%
! TCAAACAACAAAATGAATCA+AGG - chr1_2:50503458-50503477 None:intergenic 25.0%
!!! TTGTTTGAGTTTTGTTTAGA+TGG + chr1_2:50503470-50503489 Msa0075350:intron 25.0%
! AGTTGGAAAACAAAAACTTA+GGG - chr1_2:50503651-50503670 None:intergenic 25.0%
! AAGTTGGAAAACAAAAACTT+AGG - chr1_2:50503652-50503671 None:intergenic 25.0%
!!! ATTCGAGTGTTTTAATAAGT+TGG - chr1_2:50503668-50503687 None:intergenic 25.0%
! AGGAACTAAACATGATAAAA+TGG - chr1_2:50503717-50503736 None:intergenic 25.0%
!! ACTTGACATGATGTTTTATA+TGG + chr1_2:50503847-50503866 Msa0075350:intron 25.0%
!!! TTCTAAGTTTTTAGGTCTTA+AGG + chr1_2:50503897-50503916 Msa0075350:intron 25.0%
!!! AATGTTGCTATTTATGTTTC+AGG + chr1_2:50504055-50504074 Msa0075350:intron 25.0%
! ATGTGATTTATGAATATGCT+TGG + chr1_2:50504532-50504551 Msa0075350:three_prime_UTR 25.0%
! TGTGATTTATGAATATGCTT+GGG + chr1_2:50504533-50504552 Msa0075350:three_prime_UTR 25.0%
TATGTCGACATTAGAGTTAA+TGG + chr1_2:50503097-50503116 Msa0075350:CDS 30.0%
!!! TGAGTTTTGTTTAGATGGAT+TGG + chr1_2:50503475-50503494 Msa0075350:intron 30.0%
AGTAAGCTATCTTAGAGATA+AGG - chr1_2:50503519-50503538 None:intergenic 30.0%
CATCAAAATCACCATATATG+AGG + chr1_2:50503808-50503827 Msa0075350:intron 30.0%
CTCTTCAAAAACCTCATATA+TGG - chr1_2:50503822-50503841 None:intergenic 30.0%
TTAATTTCCAGAGAATCTCT+TGG + chr1_2:50503944-50503963 Msa0075350:intron 30.0%
AATCTCTTGGATAGAATGTA+TGG + chr1_2:50503957-50503976 Msa0075350:intron 30.0%
CAATATCTTTACAAGCAAAG+CGG - chr1_2:50504020-50504039 None:intergenic 30.0%
!! TGCTATTTATGTTTCAGGTT+AGG + chr1_2:50504060-50504079 Msa0075350:intron 30.0%
GATCAAGAATGATCAATTGA+AGG + chr1_2:50504166-50504185 Msa0075350:CDS 30.0%
TTAACGACATCATATGGAAT+TGG - chr1_2:50504293-50504312 None:intergenic 30.0%
AGATCATTAACGACATCATA+TGG - chr1_2:50504299-50504318 None:intergenic 30.0%
GTGATTTATGAATATGCTTG+GGG + chr1_2:50504534-50504553 Msa0075350:three_prime_UTR 30.0%
TATGTCGACATTAGAGTTAA+TGG + chr1_2:50503097-50503116 Msa0075350:CDS 30.0%
!!! TGAGTTTTGTTTAGATGGAT+TGG + chr1_2:50503475-50503494 Msa0075350:intron 30.0%
AGTAAGCTATCTTAGAGATA+AGG - chr1_2:50503519-50503538 None:intergenic 30.0%
CATCAAAATCACCATATATG+AGG + chr1_2:50503808-50503827 Msa0075350:intron 30.0%
CTCTTCAAAAACCTCATATA+TGG - chr1_2:50503822-50503841 None:intergenic 30.0%
TTAATTTCCAGAGAATCTCT+TGG + chr1_2:50503944-50503963 Msa0075350:intron 30.0%
AATCTCTTGGATAGAATGTA+TGG + chr1_2:50503957-50503976 Msa0075350:intron 30.0%
CAATATCTTTACAAGCAAAG+CGG - chr1_2:50504020-50504039 None:intergenic 30.0%
!! TGCTATTTATGTTTCAGGTT+AGG + chr1_2:50504060-50504079 Msa0075350:intron 30.0%
GATCAAGAATGATCAATTGA+AGG + chr1_2:50504166-50504185 Msa0075350:CDS 30.0%
TTAACGACATCATATGGAAT+TGG - chr1_2:50504293-50504312 None:intergenic 30.0%
AGATCATTAACGACATCATA+TGG - chr1_2:50504299-50504318 None:intergenic 30.0%
GTGATTTATGAATATGCTTG+GGG + chr1_2:50504534-50504553 Msa0075350:three_prime_UTR 30.0%
TAGACTAGGAGAAAGAAGAA+AGG - chr1_2:50502904-50502923 None:intergenic 35.0%
ATGTGATGTGATAGGTGTTA+TGG + chr1_2:50503280-50503299 Msa0075350:intron 35.0%
ACAAAAACTTAGGGCATGTT+TGG - chr1_2:50503642-50503661 None:intergenic 35.0%
TCCAATTTCTCACTTGGAAT+TGG + chr1_2:50503763-50503782 Msa0075350:intron 35.0%
TCCAATTCCAAGTGAGAAAT+TGG - chr1_2:50503767-50503786 None:intergenic 35.0%
ATTCTATCCAAGAGATTCTC+TGG - chr1_2:50503954-50503973 None:intergenic 35.0%
AGGTTAGGAACAAGATATTG+AGG + chr1_2:50504075-50504094 Msa0075350:intron 35.0%
GATGTCGTTAATGATCTCAA+AGG + chr1_2:50504302-50504321 Msa0075350:CDS 35.0%
AGACTGCATATTATTGTGCT+TGG + chr1_2:50504365-50504384 Msa0075350:three_prime_UTR 35.0%
TAGACTAGGAGAAAGAAGAA+AGG - chr1_2:50502904-50502923 None:intergenic 35.0%
ATGTGATGTGATAGGTGTTA+TGG + chr1_2:50503280-50503299 Msa0075350:intron 35.0%
ACAAAAACTTAGGGCATGTT+TGG - chr1_2:50503642-50503661 None:intergenic 35.0%
TCCAATTTCTCACTTGGAAT+TGG + chr1_2:50503763-50503782 Msa0075350:intron 35.0%
TCCAATTCCAAGTGAGAAAT+TGG - chr1_2:50503767-50503786 None:intergenic 35.0%
ATTCTATCCAAGAGATTCTC+TGG - chr1_2:50503954-50503973 None:intergenic 35.0%
AGGTTAGGAACAAGATATTG+AGG + chr1_2:50504075-50504094 Msa0075350:intron 35.0%
GATGTCGTTAATGATCTCAA+AGG + chr1_2:50504302-50504321 Msa0075350:CDS 35.0%
AGACTGCATATTATTGTGCT+TGG + chr1_2:50504365-50504384 Msa0075350:three_prime_UTR 35.0%
TAGTCTAGTGTGATTTCGAG+CGG + chr1_2:50502917-50502936 Msa0075350:five_prime_UTR 40.0%
CTTCTTCTGCTTCTAGTCTA+GGG - chr1_2:50502958-50502977 None:intergenic 40.0%
TCTTCTTCTGCTTCTAGTCT+AGG - chr1_2:50502959-50502978 None:intergenic 40.0%
TACCTCAGGACTTATCACAT+CGG + chr1_2:50503070-50503089 Msa0075350:CDS 40.0%
CAAGTCTCCAATTTCTCACT+TGG + chr1_2:50503757-50503776 Msa0075350:intron 40.0%
GGAACAAGATATTGAGGAAG+AGG + chr1_2:50504081-50504100 Msa0075350:CDS 40.0%
GTCGTTAATGATCTCAAAGG+AGG + chr1_2:50504305-50504324 Msa0075350:CDS 40.0%
TCTTAAGCAGAAGATGTGCA+AGG + chr1_2:50504566-50504585 Msa0075350:three_prime_UTR 40.0%
TAGTCTAGTGTGATTTCGAG+CGG + chr1_2:50502917-50502936 Msa0075350:five_prime_UTR 40.0%
CTTCTTCTGCTTCTAGTCTA+GGG - chr1_2:50502958-50502977 None:intergenic 40.0%
TCTTCTTCTGCTTCTAGTCT+AGG - chr1_2:50502959-50502978 None:intergenic 40.0%
TACCTCAGGACTTATCACAT+CGG + chr1_2:50503070-50503089 Msa0075350:CDS 40.0%
CAAGTCTCCAATTTCTCACT+TGG + chr1_2:50503757-50503776 Msa0075350:intron 40.0%
GGAACAAGATATTGAGGAAG+AGG + chr1_2:50504081-50504100 Msa0075350:CDS 40.0%
GTCGTTAATGATCTCAAAGG+AGG + chr1_2:50504305-50504324 Msa0075350:CDS 40.0%
GCTCGAAATCACACTAGACT+AGG - chr1_2:50502918-50502937 None:intergenic 45.0%
GAAGAAGAAAACATGCCTGC+AGG + chr1_2:50502971-50502990 Msa0075350:exon 45.0%
AGAGAATGAATCTCTGGTGC+GGG - chr1_2:50503011-50503030 None:intergenic 45.0%
GAGAGAATGAATCTCTGGTG+CGG - chr1_2:50503012-50503031 None:intergenic 45.0%
ATTGTTCCCTTCTTGCGGAA+GGG - chr1_2:50503037-50503056 None:intergenic 45.0%
TATTGTTCCCTTCTTGCGGA+AGG - chr1_2:50503038-50503057 None:intergenic 45.0%
AGGCTATTGTTCCCTTCTTG+CGG - chr1_2:50503042-50503061 None:intergenic 45.0%
GATGTGATAAGTCCTGAGGT+AGG - chr1_2:50503071-50503090 None:intergenic 45.0%
GTTAATGGAGCTGTGCACAA+AGG + chr1_2:50503112-50503131 Msa0075350:CDS 45.0%
ATGCCGCACAAATTCTACCA+CGG + chr1_2:50503136-50503155 Msa0075350:CDS 45.0%
AAATTCTACCACGGTCGTAC+CGG + chr1_2:50503145-50503164 Msa0075350:CDS 45.0%
!! CTTGTTGACTTCGACACCAA+TGG - chr1_2:50503197-50503216 None:intergenic 45.0%
ATGGCATAACATGCTCCACT+CGG - chr1_2:50504115-50504134 None:intergenic 45.0%
TGGAGCATGTTATGCCATCA+AGG + chr1_2:50504117-50504136 Msa0075350:CDS 45.0%
GAATGATCAATTGAAGGCCG+AGG + chr1_2:50504172-50504191 Msa0075350:CDS 45.0%
TCCACCATGAAACCAGGTTT+GGG - chr1_2:50504245-50504264 None:intergenic 45.0%
TTCCACCATGAAACCAGGTT+TGG - chr1_2:50504246-50504265 None:intergenic 45.0%
! AAACCTGGTTTCATGGTGGA+AGG + chr1_2:50504245-50504264 Msa0075350:CDS 45.0%
GCTCGAAATCACACTAGACT+AGG - chr1_2:50502918-50502937 None:intergenic 45.0%
GAAGAAGAAAACATGCCTGC+AGG + chr1_2:50502971-50502990 Msa0075350:exon 45.0%
AGAGAATGAATCTCTGGTGC+GGG - chr1_2:50503011-50503030 None:intergenic 45.0%
GAGAGAATGAATCTCTGGTG+CGG - chr1_2:50503012-50503031 None:intergenic 45.0%
ATTGTTCCCTTCTTGCGGAA+GGG - chr1_2:50503037-50503056 None:intergenic 45.0%
TATTGTTCCCTTCTTGCGGA+AGG - chr1_2:50503038-50503057 None:intergenic 45.0%
AGGCTATTGTTCCCTTCTTG+CGG - chr1_2:50503042-50503061 None:intergenic 45.0%
GATGTGATAAGTCCTGAGGT+AGG - chr1_2:50503071-50503090 None:intergenic 45.0%
GTTAATGGAGCTGTGCACAA+AGG + chr1_2:50503112-50503131 Msa0075350:CDS 45.0%
ATGCCGCACAAATTCTACCA+CGG + chr1_2:50503136-50503155 Msa0075350:CDS 45.0%
AAATTCTACCACGGTCGTAC+CGG + chr1_2:50503145-50503164 Msa0075350:CDS 45.0%
!! CTTGTTGACTTCGACACCAA+TGG - chr1_2:50503197-50503216 None:intergenic 45.0%
ATGGCATAACATGCTCCACT+CGG - chr1_2:50504115-50504134 None:intergenic 45.0%
TGGAGCATGTTATGCCATCA+AGG + chr1_2:50504117-50504136 Msa0075350:CDS 45.0%
GAATGATCAATTGAAGGCCG+AGG + chr1_2:50504172-50504191 Msa0075350:CDS 45.0%
TCCACCATGAAACCAGGTTT+GGG - chr1_2:50504245-50504264 None:intergenic 45.0%
TTCCACCATGAAACCAGGTT+TGG - chr1_2:50504246-50504265 None:intergenic 45.0%
! AAACCTGGTTTCATGGTGGA+AGG + chr1_2:50504245-50504264 Msa0075350:CDS 45.0%
GAAAACATGCCTGCAGGTCA+TGG + chr1_2:50502977-50502996 Msa0075350:exon 50.0%
GATCGTAAACCATGACCTGC+AGG - chr1_2:50502989-50503008 None:intergenic 50.0%
GGGACGAGAGAATGAATCTC+TGG - chr1_2:50503017-50503036 None:intergenic 50.0%
GTGATAAGTCCTGAGGTAGG+TGG - chr1_2:50503068-50503087 None:intergenic 50.0%
CACCGATGTGATAAGTCCTG+AGG - chr1_2:50503075-50503094 None:intergenic 50.0%
CGACCGTGGTAGAATTTGTG+CGG - chr1_2:50503142-50503161 None:intergenic 50.0%
! GTGTCTGGAATGTCACCAAG+CGG + chr1_2:50503170-50503189 Msa0075350:CDS 50.0%
! TGTCTGGAATGTCACCAAGC+GGG + chr1_2:50503171-50503190 Msa0075350:CDS 50.0%
GAAGAGGATTCATGTCCGAG+TGG + chr1_2:50504097-50504116 Msa0075350:CDS 50.0%
TATGCCATCAAGGTGCACTG+AGG + chr1_2:50504127-50504146 Msa0075350:CDS 50.0%
AACTCCTCAGTGCACCTTGA+TGG - chr1_2:50504134-50504153 None:intergenic 50.0%
GCACTGAGGAGTTCAGATTG+AGG + chr1_2:50504141-50504160 Msa0075350:CDS 50.0%
TCAATTGAAGGCCGAGGCTA+AGG + chr1_2:50504178-50504197 Msa0075350:CDS 50.0%
CCACCATGAAACCAGGTTTG+GGG - chr1_2:50504244-50504263 None:intergenic 50.0%
!! CATGGTGGAAGGTGCTACAT+TGG + chr1_2:50504256-50504275 Msa0075350:CDS 50.0%
GAAAACATGCCTGCAGGTCA+TGG + chr1_2:50502977-50502996 Msa0075350:exon 50.0%
GATCGTAAACCATGACCTGC+AGG - chr1_2:50502989-50503008 None:intergenic 50.0%
GGGACGAGAGAATGAATCTC+TGG - chr1_2:50503017-50503036 None:intergenic 50.0%
GTGATAAGTCCTGAGGTAGG+TGG - chr1_2:50503068-50503087 None:intergenic 50.0%
CACCGATGTGATAAGTCCTG+AGG - chr1_2:50503075-50503094 None:intergenic 50.0%
CGACCGTGGTAGAATTTGTG+CGG - chr1_2:50503142-50503161 None:intergenic 50.0%
! GTGTCTGGAATGTCACCAAG+CGG + chr1_2:50503170-50503189 Msa0075350:CDS 50.0%
! TGTCTGGAATGTCACCAAGC+GGG + chr1_2:50503171-50503190 Msa0075350:CDS 50.0%
GAAGAGGATTCATGTCCGAG+TGG + chr1_2:50504097-50504116 Msa0075350:CDS 50.0%
TATGCCATCAAGGTGCACTG+AGG + chr1_2:50504127-50504146 Msa0075350:CDS 50.0%
AACTCCTCAGTGCACCTTGA+TGG - chr1_2:50504134-50504153 None:intergenic 50.0%
GCACTGAGGAGTTCAGATTG+AGG + chr1_2:50504141-50504160 Msa0075350:CDS 50.0%
TCAATTGAAGGCCGAGGCTA+AGG + chr1_2:50504178-50504197 Msa0075350:CDS 50.0%
CCACCATGAAACCAGGTTTG+GGG - chr1_2:50504244-50504263 None:intergenic 50.0%
!! CATGGTGGAAGGTGCTACAT+TGG + chr1_2:50504256-50504275 Msa0075350:CDS 50.0%
TCTCGTCCCTTCCGCAAGAA+GGG + chr1_2:50503028-50503047 Msa0075350:CDS 55.0%
! TAGCCTTAGCCACCTACCTC+AGG + chr1_2:50503056-50503075 Msa0075350:CDS 55.0%
AGTCCTGAGGTAGGTGGCTA+AGG - chr1_2:50503062-50503081 None:intergenic 55.0%
GGTGACATTCCAGACACGAC+CGG - chr1_2:50503167-50503186 None:intergenic 55.0%
AATGTCACCAAGCGGGCCAT+TGG + chr1_2:50503178-50503197 Msa0075350:CDS 55.0%
GGTGCTTATCACCTCTCCCT+TGG - chr1_2:50504204-50504223 None:intergenic 55.0%
CCCCAAACCTGGTTTCATGG+TGG + chr1_2:50504241-50504260 Msa0075350:CDS 55.0%
GCACCTTCCACCATGAAACC+AGG - chr1_2:50504251-50504270 None:intergenic 55.0%
TCTCGTCCCTTCCGCAAGAA+GGG + chr1_2:50503028-50503047 Msa0075350:CDS 55.0%
! TAGCCTTAGCCACCTACCTC+AGG + chr1_2:50503056-50503075 Msa0075350:CDS 55.0%
AGTCCTGAGGTAGGTGGCTA+AGG - chr1_2:50503062-50503081 None:intergenic 55.0%
GGTGACATTCCAGACACGAC+CGG - chr1_2:50503167-50503186 None:intergenic 55.0%
AATGTCACCAAGCGGGCCAT+TGG + chr1_2:50503178-50503197 Msa0075350:CDS 55.0%
GGTGCTTATCACCTCTCCCT+TGG - chr1_2:50504204-50504223 None:intergenic 55.0%
CCCCAAACCTGGTTTCATGG+TGG + chr1_2:50504241-50504260 Msa0075350:CDS 55.0%
GCACCTTCCACCATGAAACC+AGG - chr1_2:50504251-50504270 None:intergenic 55.0%
CTCTCGTCCCTTCCGCAAGA+AGG + chr1_2:50503027-50503046 Msa0075350:CDS 60.0%
TTCGACACCAATGGCCCGCT+TGG - chr1_2:50503188-50503207 None:intergenic 60.0%
AAGGCCGAGGCTAAGGCCAA+GGG + chr1_2:50504185-50504204 Msa0075350:CDS 60.0%
!! CTCTCCCTTGGCCTTAGCCT+CGG - chr1_2:50504192-50504211 None:intergenic 60.0%
AAGCACCAAGCGCAAGCCAG+AGG + chr1_2:50504217-50504236 Msa0075350:CDS 60.0%
AGCACCAAGCGCAAGCCAGA+GGG + chr1_2:50504218-50504237 Msa0075350:CDS 60.0%
! AAACCAGGTTTGGGGCCCTC+TGG - chr1_2:50504236-50504255 None:intergenic 60.0%
GGGCCCCAAACCTGGTTTCA+TGG + chr1_2:50504238-50504257 Msa0075350:CDS 60.0%
CTCTCGTCCCTTCCGCAAGA+AGG + chr1_2:50503027-50503046 Msa0075350:CDS 60.0%
TTCGACACCAATGGCCCGCT+TGG - chr1_2:50503188-50503207 None:intergenic 60.0%
AAGGCCGAGGCTAAGGCCAA+GGG + chr1_2:50504185-50504204 Msa0075350:CDS 60.0%
!! CTCTCCCTTGGCCTTAGCCT+CGG - chr1_2:50504192-50504211 None:intergenic 60.0%
AAGCACCAAGCGCAAGCCAG+AGG + chr1_2:50504217-50504236 Msa0075350:CDS 60.0%
AGCACCAAGCGCAAGCCAGA+GGG + chr1_2:50504218-50504237 Msa0075350:CDS 60.0%
! AAACCAGGTTTGGGGCCCTC+TGG - chr1_2:50504236-50504255 None:intergenic 60.0%
GGGCCCCAAACCTGGTTTCA+TGG + chr1_2:50504238-50504257 Msa0075350:CDS 60.0%
AGACACGACCGGTACGACCG+TGG - chr1_2:50503156-50503175 None:intergenic 65.0%
! ACGGTCGTACCGGTCGTGTC+TGG + chr1_2:50503155-50503174 Msa0075350:CDS 65.0%
GAAGGCCGAGGCTAAGGCCA+AGG + chr1_2:50504184-50504203 Msa0075350:CDS 65.0%
CGAGGCTAAGGCCAAGGGAG+AGG + chr1_2:50504190-50504209 Msa0075350:CDS 65.0%
AAGCCAGAGGGCCCCAAACC+TGG + chr1_2:50504230-50504249 Msa0075350:CDS 65.0%
AGACACGACCGGTACGACCG+TGG - chr1_2:50503156-50503175 None:intergenic 65.0%
! ACGGTCGTACCGGTCGTGTC+TGG + chr1_2:50503155-50503174 Msa0075350:CDS 65.0%
GAAGGCCGAGGCTAAGGCCA+AGG + chr1_2:50504184-50504203 Msa0075350:CDS 65.0%
CGAGGCTAAGGCCAAGGGAG+AGG + chr1_2:50504190-50504209 Msa0075350:CDS 65.0%
AAGCCAGAGGGCCCCAAACC+TGG + chr1_2:50504230-50504249 Msa0075350:CDS 65.0%
! GGGGCCCTCTGGCTTGCGCT+TGG - chr1_2:50504225-50504244 None:intergenic 75.0%
! GGGGCCCTCTGGCTTGCGCT+TGG - chr1_2:50504225-50504244 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 50502892 50504585 50502892 ID=Msa0075350;Name=Msa0075350
chr1_2 mRNA 50502892 50504585 50502892 ID=Msa0075350-mRNA-1;Parent=Msa0075350;Name=Msa0075350-mRNA-1;_AED=0.00;_eAED=0.00;_QI=91|1|1|1|1|1|2|251|164
chr1_2 exon 50502892 50503219 50502892 ID=Msa0075350-mRNA-1:exon:15569;Parent=Msa0075350-mRNA-1
chr1_2 exon 50504077 50504585 50504077 ID=Msa0075350-mRNA-1:exon:15570;Parent=Msa0075350-mRNA-1
chr1_2 five_prime_UTR 50502892 50502982 50502892 ID=Msa0075350-mRNA-1:five_prime_utr;Parent=Msa0075350-mRNA-1
chr1_2 CDS 50502983 50503219 50502983 ID=Msa0075350-mRNA-1:cds;Parent=Msa0075350-mRNA-1
chr1_2 CDS 50504077 50504334 50504077 ID=Msa0075350-mRNA-1:cds;Parent=Msa0075350-mRNA-1
chr1_2 three_prime_UTR 50504335 50504585 50504335 ID=Msa0075350-mRNA-1:three_prime_utr;Parent=Msa0075350-mRNA-1
Gene Sequence

>Msa0075350

ATGCCTGCAGGTCATGGTTTACGATCCCGCACCAGAGATTCATTCTCTCGTCCCTTCCGCAAGAAGGGAACAATAGCCTTAGCCACCTACCTCAGGACTTATCACATCGGTGACTATGTCGACATTAGAGTTAATGGAGCTGTGCACAAAGGTATGCCGCACAAATTCTACCACGGTCGTACCGGTCGTGTCTGGAATGTCACCAAGCGGGCCATTGGTGTCGAAGTCAACAAGCAAGTTAGGAACAAGATATTGAGGAAGAGGATTCATGTCCGAGTGGAGCATGTTATGCCATCAAGGTGCACTGAGGAGTTCAGATTGAGGAAGATCAAGAATGATCAATTGAAGGCCGAGGCTAAGGCCAAGGGAGAGGTGATAAGCACCAAGCGCAAGCCAGAGGGCCCCAAACCTGGTTTCATGGTGGAAGGTGCTACATTGGAGACTGTTACTCCAATTCCATATGATGTCGTTAATGATCTCAAAGGAGGATACTAG

Protein sequence

>Msa0075350

MPAGHGLRSRTRDSFSRPFRKKGTIALATYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY*