Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0075350 | XP_013468487.1 | 100.000 | 164 | 0 | 0 | 1 | 164 | 1 | 164 | 1.27e-116 | 337 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0075350 | sp|Q43291|RL211_ARATH | 81.098 | 164 | 31 | 0 | 1 | 164 | 1 | 164 | 3.52e-100 | 288 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0075350 | A0A2K3LGM4 | 100.000 | 164 | 0 | 0 | 1 | 164 | 1 | 164 | 6.06e-117 | 337 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0001760 | Msa0075350 | 0.834526 | 2.848094e-56 | -8.615850e-47 |
Msa0003330 | Msa0075350 | 0.856917 | 2.326104e-62 | -8.615850e-47 |
Msa0027590 | Msa0075350 | 0.966953 | 1.293749e-126 | -8.615850e-47 |
Msa0040220 | Msa0075350 | 0.825862 | 3.717990e-54 | -8.615850e-47 |
Msa0042480 | Msa0075350 | 0.802736 | 4.869145e-49 | -8.615850e-47 |
Msa0044010 | Msa0075350 | 0.813517 | 2.458917e-51 | -8.615850e-47 |
Msa0065110 | Msa0075350 | 0.813252 | 2.812794e-51 | -8.615850e-47 |
Msa0070840 | Msa0075350 | 0.811694 | 6.160403e-51 | -8.615850e-47 |
Msa0072570 | Msa0075350 | 0.830689 | 2.549825e-55 | -8.615850e-47 |
Msa0075350 | Msa0079590 | 0.812197 | 4.784768e-51 | -8.615850e-47 |
Msa0075350 | Msa0087910 | 0.830298 | 3.177021e-55 | -8.615850e-47 |
Msa0075350 | Msa0114570 | 0.803801 | 2.931664e-49 | -8.615850e-47 |
Msa0075350 | Msa0128330 | 0.833638 | 4.753028e-56 | -8.615850e-47 |
Msa0075350 | Msa0134580 | 0.852786 | 3.673320e-61 | -8.615850e-47 |
Msa0075350 | Msa0138890 | 0.838578 | 2.646256e-57 | -8.615850e-47 |
Msa0075350 | Msa0167860 | 0.849151 | 3.886666e-60 | -8.615850e-47 |
Msa0075350 | Msa0168320 | 0.832831 | 7.551943e-56 | -8.615850e-47 |
Msa0075350 | Msa0174580 | 0.823685 | 1.212628e-53 | -8.615850e-47 |
Msa0075350 | Msa0175000 | 0.827109 | 1.875447e-54 | -8.615850e-47 |
Msa0075350 | Msa0191450 | 0.884809 | 1.396330e-71 | -8.615850e-47 |
Msa0075350 | Msa0191550 | 0.867644 | 1.175897e-65 | -8.615850e-47 |
Msa0075350 | Msa0192300 | 0.826214 | 3.067546e-54 | -8.615850e-47 |
Msa0075350 | Msa0192750 | 0.865341 | 6.333614e-65 | -8.615850e-47 |
Msa0075350 | Msa0194940 | 0.850070 | 2.152776e-60 | -8.615850e-47 |
Msa0075350 | Msa0195030 | 0.803387 | 3.571103e-49 | -8.615850e-47 |
Msa0075350 | Msa0210360 | 0.844123 | 9.184459e-59 | -8.615850e-47 |
Msa0075350 | Msa0229150 | 0.813272 | 2.784282e-51 | -8.615850e-47 |
Msa0075350 | Msa0233550 | 0.809864 | 1.532879e-50 | -8.615850e-47 |
Msa0075350 | Msa0235050 | 0.850479 | 1.654126e-60 | -8.615850e-47 |
Msa0075350 | Msa0239420 | 0.834439 | 2.994890e-56 | -8.615850e-47 |
Msa0075350 | Msa0277600 | 0.814341 | 1.618655e-51 | -8.615850e-47 |
Msa0075350 | Msa0281330 | 0.809206 | 2.121733e-50 | -8.615850e-47 |
Msa0075350 | Msa0281370 | 0.848728 | 5.094475e-60 | -8.615850e-47 |
Msa0075350 | Msa0297830 | 0.832262 | 1.045227e-55 | -8.615850e-47 |
Msa0075350 | Msa0298870 | 0.808502 | 3.001056e-50 | -8.615850e-47 |
Msa0075350 | Msa0301220 | 0.830993 | 2.146750e-55 | -8.615850e-47 |
Msa0075350 | Msa0301250 | 0.828895 | 6.970082e-55 | -8.615850e-47 |
Msa0075350 | Msa0303630 | 0.811770 | 5.927804e-51 | -8.615850e-47 |
Msa0075350 | Msa0312210 | 0.818696 | 1.712953e-52 | -8.615850e-47 |
Msa0075350 | Msa0313060 | 0.837946 | 3.850606e-57 | -8.615850e-47 |
Msa0075350 | Msa0315430 | 0.856281 | 3.577497e-62 | -8.615850e-47 |
Msa0075350 | Msa0335840 | 0.842894 | 1.956439e-58 | -8.615850e-47 |
Msa0075350 | Msa0340560 | 0.817597 | 3.036651e-52 | -8.615850e-47 |
Msa0075350 | Msa0346090 | 0.849287 | 3.561650e-60 | -8.615850e-47 |
Msa0075350 | Msa0369410 | 0.888711 | 4.634739e-73 | -8.615850e-47 |
Msa0075350 | Msa0371490 | 0.807256 | 5.522905e-50 | -8.615850e-47 |
Msa0075350 | Msa0377520 | 0.832606 | 8.590550e-56 | -8.615850e-47 |
Msa0075350 | Msa0382670 | 0.818404 | 1.995280e-52 | -8.615850e-47 |
Msa0075350 | Msa0426090 | 0.851504 | 8.502921e-61 | -8.615850e-47 |
Msa0075350 | Msa0426250 | 0.824240 | 8.983551e-54 | -8.615850e-47 |
Msa0075350 | Msa0463520 | 0.842176 | 3.033624e-58 | -8.615850e-47 |
Msa0075350 | Msa0471880 | 0.815883 | 7.359637e-52 | -8.615850e-47 |
Msa0075350 | Msa0472480 | 0.856021 | 4.261690e-62 | -8.615850e-47 |
Msa0075350 | Msa0475810 | 0.826674 | 2.383670e-54 | -8.615850e-47 |
Msa0075350 | Msa0481520 | 0.903760 | 2.485917e-79 | -8.615850e-47 |
Msa0075350 | Msa0481850 | 0.839791 | 1.282817e-57 | -8.615850e-47 |
Msa0075350 | Msa0517480 | 0.859208 | 4.849190e-63 | -8.615850e-47 |
Msa0075350 | Msa0529900 | 0.831336 | 1.768520e-55 | -8.615850e-47 |
Msa0075350 | Msa0540480 | 0.807243 | 5.560361e-50 | -8.615850e-47 |
Msa0075350 | Msa0547920 | 0.817685 | 2.901167e-52 | -8.615850e-47 |
Msa0075350 | Msa0550420 | 0.813951 | 1.973974e-51 | -8.615850e-47 |
Msa0075350 | Msa0573550 | 0.874284 | 7.619335e-68 | -8.615850e-47 |
Msa0075350 | Msa0582070 | 0.835924 | 1.263805e-56 | -8.615850e-47 |
Msa0075350 | Msa0584030 | 0.820714 | 5.928370e-53 | -8.615850e-47 |
Msa0075350 | Msa0596370 | 0.812018 | 5.234309e-51 | -8.615850e-47 |
Msa0075350 | Msa0597240 | 0.871188 | 8.267401e-67 | -8.615850e-47 |
Msa0075350 | Msa0602900 | 0.801541 | 8.576497e-49 | -8.615850e-47 |
Msa0075350 | Msa0605890 | 0.842194 | 3.001196e-58 | -8.615850e-47 |
Msa0075350 | Msa0619230 | 0.818650 | 1.755175e-52 | -8.615850e-47 |
Msa0075350 | Msa0622230 | 0.833090 | 6.509562e-56 | -8.615850e-47 |
Msa0075350 | Msa0643960 | 0.804569 | 2.028668e-49 | -8.615850e-47 |
Msa0075350 | Msa0653060 | 0.829837 | 4.115948e-55 | -8.615850e-47 |
Msa0075350 | Msa0686550 | 0.823816 | 1.129914e-53 | -8.615850e-47 |
Msa0075350 | Msa0694400 | 0.838932 | 2.143587e-57 | -8.615850e-47 |
Msa0075350 | Msa0704860 | 0.820812 | 5.627962e-53 | -8.615850e-47 |
Msa0075350 | Msa0705800 | 0.879848 | 8.912945e-70 | -8.615850e-47 |
Msa0075350 | Msa0712610 | 0.845965 | 2.922479e-59 | -8.615850e-47 |
Msa0075350 | Msa0717380 | 0.807840 | 4.153354e-50 | -8.615850e-47 |
Msa0075350 | Msa0748350 | 0.836711 | 7.971231e-57 | -8.615850e-47 |
Msa0075350 | Msa0752910 | 0.837528 | 4.930346e-57 | -8.615850e-47 |
Msa0075350 | Msa0758420 | 0.830643 | 2.615859e-55 | -8.615850e-47 |
Msa0075350 | Msa0781080 | 0.834692 | 2.586806e-56 | -8.615850e-47 |
Msa0075350 | Msa0788380 | 0.906892 | 9.122897e-81 | -8.615850e-47 |
Msa0075350 | Msa0799830 | 0.823607 | 1.264756e-53 | -8.615850e-47 |
Msa0075350 | Msa0822580 | 0.850203 | 1.976753e-60 | -8.615850e-47 |
Msa0075350 | Msa0838070 | 0.851243 | 1.007551e-60 | -8.615850e-47 |
Msa0075350 | Msa0861320 | 0.857703 | 1.362613e-62 | -8.615850e-47 |
Msa0075350 | Msa0915540 | 0.826186 | 3.114465e-54 | -8.615850e-47 |
Msa0075350 | Msa0929680 | 0.819865 | 9.281048e-53 | -8.615850e-47 |
Msa0075350 | Msa0929700 | 0.877124 | 8.083167e-69 | -8.615850e-47 |
Msa0075350 | Msa0929790 | 0.804476 | 2.121519e-49 | -8.615850e-47 |
Msa0075350 | Msa1037290 | 0.877940 | 4.198741e-69 | -8.615850e-47 |
Msa0075350 | Msa1040160 | 0.875043 | 4.204437e-68 | -8.615850e-47 |
Msa0075350 | Msa1041680 | 0.880816 | 4.017613e-70 | -8.615850e-47 |
Msa0075350 | Msa1042100 | 0.865726 | 4.792714e-65 | -8.615850e-47 |
Msa0075350 | Msa1080350 | 0.814279 | 1.670286e-51 | -8.615850e-47 |
Msa0075350 | Msa1082170 | 0.887372 | 1.512303e-72 | -8.615850e-47 |
Msa0075350 | Msa1083370 | 0.877349 | 6.748485e-69 | -8.615850e-47 |
Msa0075350 | Msa1125860 | 0.805707 | 1.171999e-49 | -8.615850e-47 |
Msa0075350 | Msa1126060 | 0.812207 | 4.760609e-51 | -8.615850e-47 |
Msa0075350 | Msa1126520 | 0.877301 | 7.012252e-69 | -8.615850e-47 |
Msa0075350 | Msa1164150 | 0.882518 | 9.742305e-71 | -8.615850e-47 |
Msa0075350 | Msa1165640 | 0.838827 | 2.281330e-57 | -8.615850e-47 |
Msa0075350 | Msa1166570 | 0.885548 | 7.394369e-72 | -8.615850e-47 |
Msa0075350 | Msa1167540 | 0.802507 | 5.429177e-49 | -8.615850e-47 |
Msa0075350 | Msa1180000 | 0.828048 | 1.116545e-54 | -8.615850e-47 |
Msa0075350 | Msa1186030 | 0.891122 | 5.295770e-74 | -8.615850e-47 |
Msa0075350 | Msa1206240 | 0.829986 | 3.786627e-55 | -8.615850e-47 |
Msa0075350 | Msa1218170 | 0.869595 | 2.753379e-66 | -8.615850e-47 |
Msa0075350 | Msa1235950 | 0.811088 | 8.339593e-51 | -8.615850e-47 |
Msa0075350 | Msa1235980 | 0.822677 | 2.084005e-53 | -8.615850e-47 |
Msa0075350 | Msa1237040 | 0.818935 | 1.511741e-52 | -8.615850e-47 |
Msa0075350 | Msa1240270 | 0.902112 | 1.351300e-78 | -8.615850e-47 |
Msa0075350 | Msa1258540 | 0.843392 | 1.441765e-58 | -8.615850e-47 |
Msa0075350 | Msa1270640 | 0.819268 | 1.269808e-52 | -8.615850e-47 |
Msa0075350 | Msa1270710 | 0.815184 | 1.053081e-51 | -8.615850e-47 |
Msa0075350 | Msa1278130 | 0.815336 | 9.740772e-52 | -8.615850e-47 |
Msa0075350 | Msa1301640 | 0.811881 | 5.608516e-51 | -8.615850e-47 |
Msa0075350 | Msa1311400 | 0.856918 | 2.324117e-62 | -8.615850e-47 |
Msa0075350 | Msa1317390 | 0.817710 | 2.863457e-52 | -8.615850e-47 |
Msa0075350 | Msa1351020 | 0.806935 | 6.458826e-50 | -8.615850e-47 |
Msa0075350 | Msa1356790 | 0.840171 | 1.020954e-57 | -8.615850e-47 |
Msa0075350 | Msa1358710 | 0.819133 | 1.362762e-52 | -8.615850e-47 |
Msa0075350 | Msa1363910 | 0.801997 | 6.913933e-49 | -8.615850e-47 |
Msa0075350 | Msa1364110 | 0.807691 | 4.466659e-50 | -8.615850e-47 |
Msa0075350 | Msa1368920 | 0.879634 | 1.061986e-69 | -8.615850e-47 |
Msa0075350 | Msa1374240 | 0.837646 | 4.597424e-57 | -8.615850e-47 |
Msa0075350 | Msa1385480 | 0.806638 | 7.463804e-50 | -8.615850e-47 |
Msa0075350 | Msa1390760 | 0.815126 | 1.084749e-51 | -8.615850e-47 |
Msa0075350 | Msa1392590 | 0.858069 | 1.060678e-62 | -8.615850e-47 |
Msa0075350 | Msa1397100 | 0.813784 | 2.147726e-51 | -8.615850e-47 |
Msa0075350 | Msa1403910 | 0.849510 | 3.087523e-60 | -8.615850e-47 |
Msa0075350 | Msa1406080 | 0.812576 | 3.954183e-51 | -8.615850e-47 |
Msa0075350 | Msa1418770 | 0.809226 | 2.100736e-50 | -8.615850e-47 |
Msa0075350 | Msa1432310 | 0.806473 | 8.086791e-50 | -8.615850e-47 |
Msa0075350 | Msa1446410 | 0.829107 | 6.194108e-55 | -8.615850e-47 |
Msa0075350 | Msa1449160 | 0.833126 | 6.379333e-56 | -8.615850e-47 |
Msa0075350 | Msa1463570 | 0.839594 | 1.443059e-57 | -8.615850e-47 |
Msa0075350 | Msa1465700 | 0.841150 | 5.658332e-58 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0075350 | MtrunA17_Chr1g0183851 | 100.000 | 164 | 0 | 0 | 1 | 164 | 1 | 164 | 1.17e-120 | 337 |
Msa0075350 | MtrunA17_Chr7g0268461 | 99.390 | 164 | 1 | 0 | 1 | 164 | 1 | 164 | 1.81e-120 | 336 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0075350 | AT1G09590.1 | 81.098 | 164 | 31 | 0 | 1 | 164 | 1 | 164 | 3.58e-101 | 288 |
Msa0075350 | AT1G09690.1 | 81.098 | 164 | 31 | 0 | 1 | 164 | 1 | 164 | 3.58e-101 | 288 |
Msa0075350 | AT1G57660.1 | 80.488 | 164 | 32 | 0 | 1 | 164 | 1 | 164 | 1.08e-100 | 286 |
Msa0075350 | AT1G57860.1 | 80.488 | 164 | 32 | 0 | 1 | 164 | 1 | 164 | 1.08e-100 | 286 |
Find 74 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTCTTCTGCTTCTAGTCT+AGG | 0.293767 | 1_2:-50502956 | None:intergenic |
TATGTCGACATTAGAGTTAA+TGG | 0.335175 | 1_2:+50503097 | Msa0075350:CDS |
TCCACCATGAAACCAGGTTT+GGG | 0.345744 | 1_2:-50504242 | None:intergenic |
AACTCCTCAGTGCACCTTGA+TGG | 0.353770 | 1_2:-50504131 | None:intergenic |
AGATCATTAACGACATCATA+TGG | 0.366035 | 1_2:-50504296 | None:intergenic |
GGGGCCCTCTGGCTTGCGCT+TGG | 0.369033 | 1_2:-50504222 | None:intergenic |
TTCCACCATGAAACCAGGTT+TGG | 0.392778 | 1_2:-50504243 | None:intergenic |
GGGCCCCAAACCTGGTTTCA+TGG | 0.399375 | 1_2:+50504238 | Msa0075350:CDS |
CTTCTTCTGCTTCTAGTCTA+GGG | 0.402045 | 1_2:-50502955 | None:intergenic |
TTAACGACATCATATGGAAT+TGG | 0.408404 | 1_2:-50504290 | None:intergenic |
CTTGTTGACTTCGACACCAA+TGG | 0.410846 | 1_2:-50503194 | None:intergenic |
AAACCAGGTTTGGGGCCCTC+TGG | 0.418683 | 1_2:-50504233 | None:intergenic |
CTGATATTTCATAAATTTGA+AGG | 0.428221 | 1_2:-50504431 | None:intergenic |
GGAACAAGATATTGAGGAAG+AGG | 0.429842 | 1_2:+50504081 | Msa0075350:CDS |
ACGGTCGTACCGGTCGTGTC+TGG | 0.430669 | 1_2:+50503155 | Msa0075350:CDS |
AAGCCAGAGGGCCCCAAACC+TGG | 0.445982 | 1_2:+50504230 | Msa0075350:CDS |
CTCTCCCTTGGCCTTAGCCT+CGG | 0.448320 | 1_2:-50504189 | None:intergenic |
GGTGCTTATCACCTCTCCCT+TGG | 0.453810 | 1_2:-50504201 | None:intergenic |
CTCTCGTCCCTTCCGCAAGA+AGG | 0.461875 | 1_2:+50503027 | Msa0075350:CDS |
TGTGATTTATGAATATGCTT+GGG | 0.463996 | 1_2:+50504533 | Msa0075350:three_prime_UTR |
AGACTGCATATTATTGTGCT+TGG | 0.476338 | 1_2:+50504365 | Msa0075350:three_prime_UTR |
TTCGACACCAATGGCCCGCT+TGG | 0.477602 | 1_2:-50503185 | None:intergenic |
AGTCCTGAGGTAGGTGGCTA+AGG | 0.478683 | 1_2:-50503059 | None:intergenic |
CGAGGCTAAGGCCAAGGGAG+AGG | 0.486454 | 1_2:+50504190 | Msa0075350:CDS |
GGGACGAGAGAATGAATCTC+TGG | 0.494698 | 1_2:-50503014 | None:intergenic |
AGCACCAAGCGCAAGCCAGA+GGG | 0.504695 | 1_2:+50504218 | Msa0075350:CDS |
TATTGTTCCCTTCTTGCGGA+AGG | 0.508429 | 1_2:-50503035 | None:intergenic |
TCAATTGAAGGCCGAGGCTA+AGG | 0.510816 | 1_2:+50504178 | Msa0075350:CDS |
ATGTGATTTATGAATATGCT+TGG | 0.513941 | 1_2:+50504532 | Msa0075350:three_prime_UTR |
AATGTCACCAAGCGGGCCAT+TGG | 0.521717 | 1_2:+50503178 | Msa0075350:CDS |
AAATTCTACCACGGTCGTAC+CGG | 0.524822 | 1_2:+50503145 | Msa0075350:CDS |
GATCAAGAATGATCAATTGA+AGG | 0.525684 | 1_2:+50504166 | Msa0075350:CDS |
GAAAACATGCCTGCAGGTCA+TGG | 0.528675 | 1_2:+50502977 | Msa0075350:exon |
GATCGTAAACCATGACCTGC+AGG | 0.529368 | 1_2:-50502986 | None:intergenic |
AGGTTAGGAACAAGATATTG+AGG | 0.530172 | 1_2:+50504075 | Msa0075350:intron |
CATGGTGGAAGGTGCTACAT+TGG | 0.534415 | 1_2:+50504256 | Msa0075350:CDS |
ATTGTTCCCTTCTTGCGGAA+GGG | 0.538504 | 1_2:-50503034 | None:intergenic |
AGAGAATGAATCTCTGGTGC+GGG | 0.544173 | 1_2:-50503008 | None:intergenic |
TCTCGTCCCTTCCGCAAGAA+GGG | 0.545142 | 1_2:+50503028 | Msa0075350:CDS |
TAGCCTTAGCCACCTACCTC+AGG | 0.549870 | 1_2:+50503056 | Msa0075350:CDS |
GAATGATCAATTGAAGGCCG+AGG | 0.551548 | 1_2:+50504172 | Msa0075350:CDS |
AGGCTATTGTTCCCTTCTTG+CGG | 0.554250 | 1_2:-50503039 | None:intergenic |
AAGCACCAAGCGCAAGCCAG+AGG | 0.557087 | 1_2:+50504217 | Msa0075350:CDS |
GAAGAAGAAAACATGCCTGC+AGG | 0.557795 | 1_2:+50502971 | Msa0075350:exon |
TGGAGCATGTTATGCCATCA+AGG | 0.559210 | 1_2:+50504117 | Msa0075350:CDS |
GCTCGAAATCACACTAGACT+AGG | 0.560183 | 1_2:-50502915 | None:intergenic |
GAAGGCCGAGGCTAAGGCCA+AGG | 0.560874 | 1_2:+50504184 | Msa0075350:CDS |
TGATATTTCATAAATTTGAA+GGG | 0.567429 | 1_2:-50504430 | None:intergenic |
TGTCTGGAATGTCACCAAGC+GGG | 0.572072 | 1_2:+50503171 | Msa0075350:CDS |
GCACCTTCCACCATGAAACC+AGG | 0.576804 | 1_2:-50504248 | None:intergenic |
TAGACTAGGAGAAAGAAGAA+AGG | 0.580635 | 1_2:-50502901 | None:intergenic |
AAACCTGGTTTCATGGTGGA+AGG | 0.589005 | 1_2:+50504245 | Msa0075350:CDS |
GCACTGAGGAGTTCAGATTG+AGG | 0.599052 | 1_2:+50504141 | Msa0075350:CDS |
GGTGACATTCCAGACACGAC+CGG | 0.600537 | 1_2:-50503164 | None:intergenic |
GTGATTTATGAATATGCTTG+GGG | 0.615011 | 1_2:+50504534 | Msa0075350:three_prime_UTR |
ATGGCATAACATGCTCCACT+CGG | 0.618716 | 1_2:-50504112 | None:intergenic |
GAGAGAATGAATCTCTGGTG+CGG | 0.619187 | 1_2:-50503009 | None:intergenic |
GATGTCGTTAATGATCTCAA+AGG | 0.621805 | 1_2:+50504302 | Msa0075350:CDS |
TAGTCTAGTGTGATTTCGAG+CGG | 0.627394 | 1_2:+50502917 | Msa0075350:five_prime_UTR |
GTTAATGGAGCTGTGCACAA+AGG | 0.632022 | 1_2:+50503112 | Msa0075350:CDS |
GTCGTTAATGATCTCAAAGG+AGG | 0.636972 | 1_2:+50504305 | Msa0075350:CDS |
AAGGCCGAGGCTAAGGCCAA+GGG | 0.643263 | 1_2:+50504185 | Msa0075350:CDS |
CCACCATGAAACCAGGTTTG+GGG | 0.653619 | 1_2:-50504241 | None:intergenic |
GTGTCTGGAATGTCACCAAG+CGG | 0.655012 | 1_2:+50503170 | Msa0075350:CDS |
GTGATAAGTCCTGAGGTAGG+TGG | 0.662852 | 1_2:-50503065 | None:intergenic |
CGACCGTGGTAGAATTTGTG+CGG | 0.677873 | 1_2:-50503139 | None:intergenic |
CACCGATGTGATAAGTCCTG+AGG | 0.683027 | 1_2:-50503072 | None:intergenic |
GATGTGATAAGTCCTGAGGT+AGG | 0.683685 | 1_2:-50503068 | None:intergenic |
CCCCAAACCTGGTTTCATGG+TGG | 0.684233 | 1_2:+50504241 | Msa0075350:CDS |
AGACACGACCGGTACGACCG+TGG | 0.690324 | 1_2:-50503153 | None:intergenic |
GAAGAGGATTCATGTCCGAG+TGG | 0.705446 | 1_2:+50504097 | Msa0075350:CDS |
TACCTCAGGACTTATCACAT+CGG | 0.727991 | 1_2:+50503070 | Msa0075350:CDS |
ATGCCGCACAAATTCTACCA+CGG | 0.741255 | 1_2:+50503136 | Msa0075350:CDS |
TATGCCATCAAGGTGCACTG+AGG | 0.765204 | 1_2:+50504127 | Msa0075350:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGATATTTCATAAATTTGAA+GGG | - | chr1_2:50504433-50504452 | None:intergenic | 15.0% |
!! | TGATATTTCATAAATTTGAA+GGG | - | chr1_2:50504433-50504452 | None:intergenic | 15.0% |
!!! | ACATAAATGAAAGTATTTGT+AGG | - | chr1_2:50503737-50503756 | None:intergenic | 20.0% |
!!! | GAAGAATTTTGTGTTAAATA+TGG | - | chr1_2:50503880-50503899 | None:intergenic | 20.0% |
!!! | CAAAATTCTTCTAAGTTTTT+AGG | + | chr1_2:50503889-50503908 | Msa0075350:intron | 20.0% |
!! | CTGATATTTCATAAATTTGA+AGG | - | chr1_2:50504434-50504453 | None:intergenic | 20.0% |
!!! | ACATAAATGAAAGTATTTGT+AGG | - | chr1_2:50503737-50503756 | None:intergenic | 20.0% |
!!! | GAAGAATTTTGTGTTAAATA+TGG | - | chr1_2:50503880-50503899 | None:intergenic | 20.0% |
!!! | CAAAATTCTTCTAAGTTTTT+AGG | + | chr1_2:50503889-50503908 | Msa0075350:intron | 20.0% |
!! | CTGATATTTCATAAATTTGA+AGG | - | chr1_2:50504434-50504453 | None:intergenic | 20.0% |
! | ACAAATATATGTGATGTGAT+AGG | + | chr1_2:50503272-50503291 | Msa0075350:intron | 25.0% |
! | TTTGCTTTAGTAGTATATTC+AGG | + | chr1_2:50503380-50503399 | Msa0075350:intron | 25.0% |
! | TCAAACAACAAAATGAATCA+AGG | - | chr1_2:50503458-50503477 | None:intergenic | 25.0% |
!!! | TTGTTTGAGTTTTGTTTAGA+TGG | + | chr1_2:50503470-50503489 | Msa0075350:intron | 25.0% |
! | AGTTGGAAAACAAAAACTTA+GGG | - | chr1_2:50503651-50503670 | None:intergenic | 25.0% |
! | AAGTTGGAAAACAAAAACTT+AGG | - | chr1_2:50503652-50503671 | None:intergenic | 25.0% |
!!! | ATTCGAGTGTTTTAATAAGT+TGG | - | chr1_2:50503668-50503687 | None:intergenic | 25.0% |
! | AGGAACTAAACATGATAAAA+TGG | - | chr1_2:50503717-50503736 | None:intergenic | 25.0% |
!! | ACTTGACATGATGTTTTATA+TGG | + | chr1_2:50503847-50503866 | Msa0075350:intron | 25.0% |
!!! | TTCTAAGTTTTTAGGTCTTA+AGG | + | chr1_2:50503897-50503916 | Msa0075350:intron | 25.0% |
!!! | AATGTTGCTATTTATGTTTC+AGG | + | chr1_2:50504055-50504074 | Msa0075350:intron | 25.0% |
! | ATGTGATTTATGAATATGCT+TGG | + | chr1_2:50504532-50504551 | Msa0075350:three_prime_UTR | 25.0% |
! | TGTGATTTATGAATATGCTT+GGG | + | chr1_2:50504533-50504552 | Msa0075350:three_prime_UTR | 25.0% |
! | ACAAATATATGTGATGTGAT+AGG | + | chr1_2:50503272-50503291 | Msa0075350:intron | 25.0% |
! | TTTGCTTTAGTAGTATATTC+AGG | + | chr1_2:50503380-50503399 | Msa0075350:intron | 25.0% |
! | TCAAACAACAAAATGAATCA+AGG | - | chr1_2:50503458-50503477 | None:intergenic | 25.0% |
!!! | TTGTTTGAGTTTTGTTTAGA+TGG | + | chr1_2:50503470-50503489 | Msa0075350:intron | 25.0% |
! | AGTTGGAAAACAAAAACTTA+GGG | - | chr1_2:50503651-50503670 | None:intergenic | 25.0% |
! | AAGTTGGAAAACAAAAACTT+AGG | - | chr1_2:50503652-50503671 | None:intergenic | 25.0% |
!!! | ATTCGAGTGTTTTAATAAGT+TGG | - | chr1_2:50503668-50503687 | None:intergenic | 25.0% |
! | AGGAACTAAACATGATAAAA+TGG | - | chr1_2:50503717-50503736 | None:intergenic | 25.0% |
!! | ACTTGACATGATGTTTTATA+TGG | + | chr1_2:50503847-50503866 | Msa0075350:intron | 25.0% |
!!! | TTCTAAGTTTTTAGGTCTTA+AGG | + | chr1_2:50503897-50503916 | Msa0075350:intron | 25.0% |
!!! | AATGTTGCTATTTATGTTTC+AGG | + | chr1_2:50504055-50504074 | Msa0075350:intron | 25.0% |
! | ATGTGATTTATGAATATGCT+TGG | + | chr1_2:50504532-50504551 | Msa0075350:three_prime_UTR | 25.0% |
! | TGTGATTTATGAATATGCTT+GGG | + | chr1_2:50504533-50504552 | Msa0075350:three_prime_UTR | 25.0% |
TATGTCGACATTAGAGTTAA+TGG | + | chr1_2:50503097-50503116 | Msa0075350:CDS | 30.0% | |
!!! | TGAGTTTTGTTTAGATGGAT+TGG | + | chr1_2:50503475-50503494 | Msa0075350:intron | 30.0% |
AGTAAGCTATCTTAGAGATA+AGG | - | chr1_2:50503519-50503538 | None:intergenic | 30.0% | |
CATCAAAATCACCATATATG+AGG | + | chr1_2:50503808-50503827 | Msa0075350:intron | 30.0% | |
CTCTTCAAAAACCTCATATA+TGG | - | chr1_2:50503822-50503841 | None:intergenic | 30.0% | |
TTAATTTCCAGAGAATCTCT+TGG | + | chr1_2:50503944-50503963 | Msa0075350:intron | 30.0% | |
AATCTCTTGGATAGAATGTA+TGG | + | chr1_2:50503957-50503976 | Msa0075350:intron | 30.0% | |
CAATATCTTTACAAGCAAAG+CGG | - | chr1_2:50504020-50504039 | None:intergenic | 30.0% | |
!! | TGCTATTTATGTTTCAGGTT+AGG | + | chr1_2:50504060-50504079 | Msa0075350:intron | 30.0% |
GATCAAGAATGATCAATTGA+AGG | + | chr1_2:50504166-50504185 | Msa0075350:CDS | 30.0% | |
TTAACGACATCATATGGAAT+TGG | - | chr1_2:50504293-50504312 | None:intergenic | 30.0% | |
AGATCATTAACGACATCATA+TGG | - | chr1_2:50504299-50504318 | None:intergenic | 30.0% | |
GTGATTTATGAATATGCTTG+GGG | + | chr1_2:50504534-50504553 | Msa0075350:three_prime_UTR | 30.0% | |
TATGTCGACATTAGAGTTAA+TGG | + | chr1_2:50503097-50503116 | Msa0075350:CDS | 30.0% | |
!!! | TGAGTTTTGTTTAGATGGAT+TGG | + | chr1_2:50503475-50503494 | Msa0075350:intron | 30.0% |
AGTAAGCTATCTTAGAGATA+AGG | - | chr1_2:50503519-50503538 | None:intergenic | 30.0% | |
CATCAAAATCACCATATATG+AGG | + | chr1_2:50503808-50503827 | Msa0075350:intron | 30.0% | |
CTCTTCAAAAACCTCATATA+TGG | - | chr1_2:50503822-50503841 | None:intergenic | 30.0% | |
TTAATTTCCAGAGAATCTCT+TGG | + | chr1_2:50503944-50503963 | Msa0075350:intron | 30.0% | |
AATCTCTTGGATAGAATGTA+TGG | + | chr1_2:50503957-50503976 | Msa0075350:intron | 30.0% | |
CAATATCTTTACAAGCAAAG+CGG | - | chr1_2:50504020-50504039 | None:intergenic | 30.0% | |
!! | TGCTATTTATGTTTCAGGTT+AGG | + | chr1_2:50504060-50504079 | Msa0075350:intron | 30.0% |
GATCAAGAATGATCAATTGA+AGG | + | chr1_2:50504166-50504185 | Msa0075350:CDS | 30.0% | |
TTAACGACATCATATGGAAT+TGG | - | chr1_2:50504293-50504312 | None:intergenic | 30.0% | |
AGATCATTAACGACATCATA+TGG | - | chr1_2:50504299-50504318 | None:intergenic | 30.0% | |
GTGATTTATGAATATGCTTG+GGG | + | chr1_2:50504534-50504553 | Msa0075350:three_prime_UTR | 30.0% | |
TAGACTAGGAGAAAGAAGAA+AGG | - | chr1_2:50502904-50502923 | None:intergenic | 35.0% | |
ATGTGATGTGATAGGTGTTA+TGG | + | chr1_2:50503280-50503299 | Msa0075350:intron | 35.0% | |
ACAAAAACTTAGGGCATGTT+TGG | - | chr1_2:50503642-50503661 | None:intergenic | 35.0% | |
TCCAATTTCTCACTTGGAAT+TGG | + | chr1_2:50503763-50503782 | Msa0075350:intron | 35.0% | |
TCCAATTCCAAGTGAGAAAT+TGG | - | chr1_2:50503767-50503786 | None:intergenic | 35.0% | |
ATTCTATCCAAGAGATTCTC+TGG | - | chr1_2:50503954-50503973 | None:intergenic | 35.0% | |
AGGTTAGGAACAAGATATTG+AGG | + | chr1_2:50504075-50504094 | Msa0075350:intron | 35.0% | |
GATGTCGTTAATGATCTCAA+AGG | + | chr1_2:50504302-50504321 | Msa0075350:CDS | 35.0% | |
AGACTGCATATTATTGTGCT+TGG | + | chr1_2:50504365-50504384 | Msa0075350:three_prime_UTR | 35.0% | |
TAGACTAGGAGAAAGAAGAA+AGG | - | chr1_2:50502904-50502923 | None:intergenic | 35.0% | |
ATGTGATGTGATAGGTGTTA+TGG | + | chr1_2:50503280-50503299 | Msa0075350:intron | 35.0% | |
ACAAAAACTTAGGGCATGTT+TGG | - | chr1_2:50503642-50503661 | None:intergenic | 35.0% | |
TCCAATTTCTCACTTGGAAT+TGG | + | chr1_2:50503763-50503782 | Msa0075350:intron | 35.0% | |
TCCAATTCCAAGTGAGAAAT+TGG | - | chr1_2:50503767-50503786 | None:intergenic | 35.0% | |
ATTCTATCCAAGAGATTCTC+TGG | - | chr1_2:50503954-50503973 | None:intergenic | 35.0% | |
AGGTTAGGAACAAGATATTG+AGG | + | chr1_2:50504075-50504094 | Msa0075350:intron | 35.0% | |
GATGTCGTTAATGATCTCAA+AGG | + | chr1_2:50504302-50504321 | Msa0075350:CDS | 35.0% | |
AGACTGCATATTATTGTGCT+TGG | + | chr1_2:50504365-50504384 | Msa0075350:three_prime_UTR | 35.0% | |
TAGTCTAGTGTGATTTCGAG+CGG | + | chr1_2:50502917-50502936 | Msa0075350:five_prime_UTR | 40.0% | |
CTTCTTCTGCTTCTAGTCTA+GGG | - | chr1_2:50502958-50502977 | None:intergenic | 40.0% | |
TCTTCTTCTGCTTCTAGTCT+AGG | - | chr1_2:50502959-50502978 | None:intergenic | 40.0% | |
TACCTCAGGACTTATCACAT+CGG | + | chr1_2:50503070-50503089 | Msa0075350:CDS | 40.0% | |
CAAGTCTCCAATTTCTCACT+TGG | + | chr1_2:50503757-50503776 | Msa0075350:intron | 40.0% | |
GGAACAAGATATTGAGGAAG+AGG | + | chr1_2:50504081-50504100 | Msa0075350:CDS | 40.0% | |
GTCGTTAATGATCTCAAAGG+AGG | + | chr1_2:50504305-50504324 | Msa0075350:CDS | 40.0% | |
TCTTAAGCAGAAGATGTGCA+AGG | + | chr1_2:50504566-50504585 | Msa0075350:three_prime_UTR | 40.0% | |
TAGTCTAGTGTGATTTCGAG+CGG | + | chr1_2:50502917-50502936 | Msa0075350:five_prime_UTR | 40.0% | |
CTTCTTCTGCTTCTAGTCTA+GGG | - | chr1_2:50502958-50502977 | None:intergenic | 40.0% | |
TCTTCTTCTGCTTCTAGTCT+AGG | - | chr1_2:50502959-50502978 | None:intergenic | 40.0% | |
TACCTCAGGACTTATCACAT+CGG | + | chr1_2:50503070-50503089 | Msa0075350:CDS | 40.0% | |
CAAGTCTCCAATTTCTCACT+TGG | + | chr1_2:50503757-50503776 | Msa0075350:intron | 40.0% | |
GGAACAAGATATTGAGGAAG+AGG | + | chr1_2:50504081-50504100 | Msa0075350:CDS | 40.0% | |
GTCGTTAATGATCTCAAAGG+AGG | + | chr1_2:50504305-50504324 | Msa0075350:CDS | 40.0% | |
GCTCGAAATCACACTAGACT+AGG | - | chr1_2:50502918-50502937 | None:intergenic | 45.0% | |
GAAGAAGAAAACATGCCTGC+AGG | + | chr1_2:50502971-50502990 | Msa0075350:exon | 45.0% | |
AGAGAATGAATCTCTGGTGC+GGG | - | chr1_2:50503011-50503030 | None:intergenic | 45.0% | |
GAGAGAATGAATCTCTGGTG+CGG | - | chr1_2:50503012-50503031 | None:intergenic | 45.0% | |
ATTGTTCCCTTCTTGCGGAA+GGG | - | chr1_2:50503037-50503056 | None:intergenic | 45.0% | |
TATTGTTCCCTTCTTGCGGA+AGG | - | chr1_2:50503038-50503057 | None:intergenic | 45.0% | |
AGGCTATTGTTCCCTTCTTG+CGG | - | chr1_2:50503042-50503061 | None:intergenic | 45.0% | |
GATGTGATAAGTCCTGAGGT+AGG | - | chr1_2:50503071-50503090 | None:intergenic | 45.0% | |
GTTAATGGAGCTGTGCACAA+AGG | + | chr1_2:50503112-50503131 | Msa0075350:CDS | 45.0% | |
ATGCCGCACAAATTCTACCA+CGG | + | chr1_2:50503136-50503155 | Msa0075350:CDS | 45.0% | |
AAATTCTACCACGGTCGTAC+CGG | + | chr1_2:50503145-50503164 | Msa0075350:CDS | 45.0% | |
!! | CTTGTTGACTTCGACACCAA+TGG | - | chr1_2:50503197-50503216 | None:intergenic | 45.0% |
ATGGCATAACATGCTCCACT+CGG | - | chr1_2:50504115-50504134 | None:intergenic | 45.0% | |
TGGAGCATGTTATGCCATCA+AGG | + | chr1_2:50504117-50504136 | Msa0075350:CDS | 45.0% | |
GAATGATCAATTGAAGGCCG+AGG | + | chr1_2:50504172-50504191 | Msa0075350:CDS | 45.0% | |
TCCACCATGAAACCAGGTTT+GGG | - | chr1_2:50504245-50504264 | None:intergenic | 45.0% | |
TTCCACCATGAAACCAGGTT+TGG | - | chr1_2:50504246-50504265 | None:intergenic | 45.0% | |
! | AAACCTGGTTTCATGGTGGA+AGG | + | chr1_2:50504245-50504264 | Msa0075350:CDS | 45.0% |
GCTCGAAATCACACTAGACT+AGG | - | chr1_2:50502918-50502937 | None:intergenic | 45.0% | |
GAAGAAGAAAACATGCCTGC+AGG | + | chr1_2:50502971-50502990 | Msa0075350:exon | 45.0% | |
AGAGAATGAATCTCTGGTGC+GGG | - | chr1_2:50503011-50503030 | None:intergenic | 45.0% | |
GAGAGAATGAATCTCTGGTG+CGG | - | chr1_2:50503012-50503031 | None:intergenic | 45.0% | |
ATTGTTCCCTTCTTGCGGAA+GGG | - | chr1_2:50503037-50503056 | None:intergenic | 45.0% | |
TATTGTTCCCTTCTTGCGGA+AGG | - | chr1_2:50503038-50503057 | None:intergenic | 45.0% | |
AGGCTATTGTTCCCTTCTTG+CGG | - | chr1_2:50503042-50503061 | None:intergenic | 45.0% | |
GATGTGATAAGTCCTGAGGT+AGG | - | chr1_2:50503071-50503090 | None:intergenic | 45.0% | |
GTTAATGGAGCTGTGCACAA+AGG | + | chr1_2:50503112-50503131 | Msa0075350:CDS | 45.0% | |
ATGCCGCACAAATTCTACCA+CGG | + | chr1_2:50503136-50503155 | Msa0075350:CDS | 45.0% | |
AAATTCTACCACGGTCGTAC+CGG | + | chr1_2:50503145-50503164 | Msa0075350:CDS | 45.0% | |
!! | CTTGTTGACTTCGACACCAA+TGG | - | chr1_2:50503197-50503216 | None:intergenic | 45.0% |
ATGGCATAACATGCTCCACT+CGG | - | chr1_2:50504115-50504134 | None:intergenic | 45.0% | |
TGGAGCATGTTATGCCATCA+AGG | + | chr1_2:50504117-50504136 | Msa0075350:CDS | 45.0% | |
GAATGATCAATTGAAGGCCG+AGG | + | chr1_2:50504172-50504191 | Msa0075350:CDS | 45.0% | |
TCCACCATGAAACCAGGTTT+GGG | - | chr1_2:50504245-50504264 | None:intergenic | 45.0% | |
TTCCACCATGAAACCAGGTT+TGG | - | chr1_2:50504246-50504265 | None:intergenic | 45.0% | |
! | AAACCTGGTTTCATGGTGGA+AGG | + | chr1_2:50504245-50504264 | Msa0075350:CDS | 45.0% |
GAAAACATGCCTGCAGGTCA+TGG | + | chr1_2:50502977-50502996 | Msa0075350:exon | 50.0% | |
GATCGTAAACCATGACCTGC+AGG | - | chr1_2:50502989-50503008 | None:intergenic | 50.0% | |
GGGACGAGAGAATGAATCTC+TGG | - | chr1_2:50503017-50503036 | None:intergenic | 50.0% | |
GTGATAAGTCCTGAGGTAGG+TGG | - | chr1_2:50503068-50503087 | None:intergenic | 50.0% | |
CACCGATGTGATAAGTCCTG+AGG | - | chr1_2:50503075-50503094 | None:intergenic | 50.0% | |
CGACCGTGGTAGAATTTGTG+CGG | - | chr1_2:50503142-50503161 | None:intergenic | 50.0% | |
! | GTGTCTGGAATGTCACCAAG+CGG | + | chr1_2:50503170-50503189 | Msa0075350:CDS | 50.0% |
! | TGTCTGGAATGTCACCAAGC+GGG | + | chr1_2:50503171-50503190 | Msa0075350:CDS | 50.0% |
GAAGAGGATTCATGTCCGAG+TGG | + | chr1_2:50504097-50504116 | Msa0075350:CDS | 50.0% | |
TATGCCATCAAGGTGCACTG+AGG | + | chr1_2:50504127-50504146 | Msa0075350:CDS | 50.0% | |
AACTCCTCAGTGCACCTTGA+TGG | - | chr1_2:50504134-50504153 | None:intergenic | 50.0% | |
GCACTGAGGAGTTCAGATTG+AGG | + | chr1_2:50504141-50504160 | Msa0075350:CDS | 50.0% | |
TCAATTGAAGGCCGAGGCTA+AGG | + | chr1_2:50504178-50504197 | Msa0075350:CDS | 50.0% | |
CCACCATGAAACCAGGTTTG+GGG | - | chr1_2:50504244-50504263 | None:intergenic | 50.0% | |
!! | CATGGTGGAAGGTGCTACAT+TGG | + | chr1_2:50504256-50504275 | Msa0075350:CDS | 50.0% |
GAAAACATGCCTGCAGGTCA+TGG | + | chr1_2:50502977-50502996 | Msa0075350:exon | 50.0% | |
GATCGTAAACCATGACCTGC+AGG | - | chr1_2:50502989-50503008 | None:intergenic | 50.0% | |
GGGACGAGAGAATGAATCTC+TGG | - | chr1_2:50503017-50503036 | None:intergenic | 50.0% | |
GTGATAAGTCCTGAGGTAGG+TGG | - | chr1_2:50503068-50503087 | None:intergenic | 50.0% | |
CACCGATGTGATAAGTCCTG+AGG | - | chr1_2:50503075-50503094 | None:intergenic | 50.0% | |
CGACCGTGGTAGAATTTGTG+CGG | - | chr1_2:50503142-50503161 | None:intergenic | 50.0% | |
! | GTGTCTGGAATGTCACCAAG+CGG | + | chr1_2:50503170-50503189 | Msa0075350:CDS | 50.0% |
! | TGTCTGGAATGTCACCAAGC+GGG | + | chr1_2:50503171-50503190 | Msa0075350:CDS | 50.0% |
GAAGAGGATTCATGTCCGAG+TGG | + | chr1_2:50504097-50504116 | Msa0075350:CDS | 50.0% | |
TATGCCATCAAGGTGCACTG+AGG | + | chr1_2:50504127-50504146 | Msa0075350:CDS | 50.0% | |
AACTCCTCAGTGCACCTTGA+TGG | - | chr1_2:50504134-50504153 | None:intergenic | 50.0% | |
GCACTGAGGAGTTCAGATTG+AGG | + | chr1_2:50504141-50504160 | Msa0075350:CDS | 50.0% | |
TCAATTGAAGGCCGAGGCTA+AGG | + | chr1_2:50504178-50504197 | Msa0075350:CDS | 50.0% | |
CCACCATGAAACCAGGTTTG+GGG | - | chr1_2:50504244-50504263 | None:intergenic | 50.0% | |
!! | CATGGTGGAAGGTGCTACAT+TGG | + | chr1_2:50504256-50504275 | Msa0075350:CDS | 50.0% |
TCTCGTCCCTTCCGCAAGAA+GGG | + | chr1_2:50503028-50503047 | Msa0075350:CDS | 55.0% | |
! | TAGCCTTAGCCACCTACCTC+AGG | + | chr1_2:50503056-50503075 | Msa0075350:CDS | 55.0% |
AGTCCTGAGGTAGGTGGCTA+AGG | - | chr1_2:50503062-50503081 | None:intergenic | 55.0% | |
GGTGACATTCCAGACACGAC+CGG | - | chr1_2:50503167-50503186 | None:intergenic | 55.0% | |
AATGTCACCAAGCGGGCCAT+TGG | + | chr1_2:50503178-50503197 | Msa0075350:CDS | 55.0% | |
GGTGCTTATCACCTCTCCCT+TGG | - | chr1_2:50504204-50504223 | None:intergenic | 55.0% | |
CCCCAAACCTGGTTTCATGG+TGG | + | chr1_2:50504241-50504260 | Msa0075350:CDS | 55.0% | |
GCACCTTCCACCATGAAACC+AGG | - | chr1_2:50504251-50504270 | None:intergenic | 55.0% | |
TCTCGTCCCTTCCGCAAGAA+GGG | + | chr1_2:50503028-50503047 | Msa0075350:CDS | 55.0% | |
! | TAGCCTTAGCCACCTACCTC+AGG | + | chr1_2:50503056-50503075 | Msa0075350:CDS | 55.0% |
AGTCCTGAGGTAGGTGGCTA+AGG | - | chr1_2:50503062-50503081 | None:intergenic | 55.0% | |
GGTGACATTCCAGACACGAC+CGG | - | chr1_2:50503167-50503186 | None:intergenic | 55.0% | |
AATGTCACCAAGCGGGCCAT+TGG | + | chr1_2:50503178-50503197 | Msa0075350:CDS | 55.0% | |
GGTGCTTATCACCTCTCCCT+TGG | - | chr1_2:50504204-50504223 | None:intergenic | 55.0% | |
CCCCAAACCTGGTTTCATGG+TGG | + | chr1_2:50504241-50504260 | Msa0075350:CDS | 55.0% | |
GCACCTTCCACCATGAAACC+AGG | - | chr1_2:50504251-50504270 | None:intergenic | 55.0% | |
CTCTCGTCCCTTCCGCAAGA+AGG | + | chr1_2:50503027-50503046 | Msa0075350:CDS | 60.0% | |
TTCGACACCAATGGCCCGCT+TGG | - | chr1_2:50503188-50503207 | None:intergenic | 60.0% | |
AAGGCCGAGGCTAAGGCCAA+GGG | + | chr1_2:50504185-50504204 | Msa0075350:CDS | 60.0% | |
!! | CTCTCCCTTGGCCTTAGCCT+CGG | - | chr1_2:50504192-50504211 | None:intergenic | 60.0% |
AAGCACCAAGCGCAAGCCAG+AGG | + | chr1_2:50504217-50504236 | Msa0075350:CDS | 60.0% | |
AGCACCAAGCGCAAGCCAGA+GGG | + | chr1_2:50504218-50504237 | Msa0075350:CDS | 60.0% | |
! | AAACCAGGTTTGGGGCCCTC+TGG | - | chr1_2:50504236-50504255 | None:intergenic | 60.0% |
GGGCCCCAAACCTGGTTTCA+TGG | + | chr1_2:50504238-50504257 | Msa0075350:CDS | 60.0% | |
CTCTCGTCCCTTCCGCAAGA+AGG | + | chr1_2:50503027-50503046 | Msa0075350:CDS | 60.0% | |
TTCGACACCAATGGCCCGCT+TGG | - | chr1_2:50503188-50503207 | None:intergenic | 60.0% | |
AAGGCCGAGGCTAAGGCCAA+GGG | + | chr1_2:50504185-50504204 | Msa0075350:CDS | 60.0% | |
!! | CTCTCCCTTGGCCTTAGCCT+CGG | - | chr1_2:50504192-50504211 | None:intergenic | 60.0% |
AAGCACCAAGCGCAAGCCAG+AGG | + | chr1_2:50504217-50504236 | Msa0075350:CDS | 60.0% | |
AGCACCAAGCGCAAGCCAGA+GGG | + | chr1_2:50504218-50504237 | Msa0075350:CDS | 60.0% | |
! | AAACCAGGTTTGGGGCCCTC+TGG | - | chr1_2:50504236-50504255 | None:intergenic | 60.0% |
GGGCCCCAAACCTGGTTTCA+TGG | + | chr1_2:50504238-50504257 | Msa0075350:CDS | 60.0% | |
AGACACGACCGGTACGACCG+TGG | - | chr1_2:50503156-50503175 | None:intergenic | 65.0% | |
! | ACGGTCGTACCGGTCGTGTC+TGG | + | chr1_2:50503155-50503174 | Msa0075350:CDS | 65.0% |
GAAGGCCGAGGCTAAGGCCA+AGG | + | chr1_2:50504184-50504203 | Msa0075350:CDS | 65.0% | |
CGAGGCTAAGGCCAAGGGAG+AGG | + | chr1_2:50504190-50504209 | Msa0075350:CDS | 65.0% | |
AAGCCAGAGGGCCCCAAACC+TGG | + | chr1_2:50504230-50504249 | Msa0075350:CDS | 65.0% | |
AGACACGACCGGTACGACCG+TGG | - | chr1_2:50503156-50503175 | None:intergenic | 65.0% | |
! | ACGGTCGTACCGGTCGTGTC+TGG | + | chr1_2:50503155-50503174 | Msa0075350:CDS | 65.0% |
GAAGGCCGAGGCTAAGGCCA+AGG | + | chr1_2:50504184-50504203 | Msa0075350:CDS | 65.0% | |
CGAGGCTAAGGCCAAGGGAG+AGG | + | chr1_2:50504190-50504209 | Msa0075350:CDS | 65.0% | |
AAGCCAGAGGGCCCCAAACC+TGG | + | chr1_2:50504230-50504249 | Msa0075350:CDS | 65.0% | |
! | GGGGCCCTCTGGCTTGCGCT+TGG | - | chr1_2:50504225-50504244 | None:intergenic | 75.0% |
! | GGGGCCCTCTGGCTTGCGCT+TGG | - | chr1_2:50504225-50504244 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 50502892 | 50504585 | 50502892 | ID=Msa0075350;Name=Msa0075350 |
chr1_2 | mRNA | 50502892 | 50504585 | 50502892 | ID=Msa0075350-mRNA-1;Parent=Msa0075350;Name=Msa0075350-mRNA-1;_AED=0.00;_eAED=0.00;_QI=91|1|1|1|1|1|2|251|164 |
chr1_2 | exon | 50502892 | 50503219 | 50502892 | ID=Msa0075350-mRNA-1:exon:15569;Parent=Msa0075350-mRNA-1 |
chr1_2 | exon | 50504077 | 50504585 | 50504077 | ID=Msa0075350-mRNA-1:exon:15570;Parent=Msa0075350-mRNA-1 |
chr1_2 | five_prime_UTR | 50502892 | 50502982 | 50502892 | ID=Msa0075350-mRNA-1:five_prime_utr;Parent=Msa0075350-mRNA-1 |
chr1_2 | CDS | 50502983 | 50503219 | 50502983 | ID=Msa0075350-mRNA-1:cds;Parent=Msa0075350-mRNA-1 |
chr1_2 | CDS | 50504077 | 50504334 | 50504077 | ID=Msa0075350-mRNA-1:cds;Parent=Msa0075350-mRNA-1 |
chr1_2 | three_prime_UTR | 50504335 | 50504585 | 50504335 | ID=Msa0075350-mRNA-1:three_prime_utr;Parent=Msa0075350-mRNA-1 |
Gene Sequence |
Protein sequence |