Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0752450 | A0A396HIY5 | 93.243 | 740 | 26 | 6 | 1 | 731 | 1 | 725 | 0.0 | 1206 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000050 | Msa0752450 | 0.872936 | 2.167750e-67 | -8.615850e-47 |
Msa0001960 | Msa0752450 | 0.833255 | 5.925098e-56 | -8.615850e-47 |
Msa0002580 | Msa0752450 | 0.813595 | 2.363711e-51 | -8.615850e-47 |
Msa0012610 | Msa0752450 | 0.809074 | 2.264120e-50 | -8.615850e-47 |
Msa0017670 | Msa0752450 | 0.834280 | 3.284031e-56 | -8.615850e-47 |
Msa0017930 | Msa0752450 | 0.847337 | 1.232901e-59 | -8.615850e-47 |
Msa0030700 | Msa0752450 | 0.841253 | 5.315411e-58 | -8.615850e-47 |
Msa0030990 | Msa0752450 | 0.802092 | 6.610879e-49 | -8.615850e-47 |
Msa0072720 | Msa0752450 | 0.807171 | 5.758504e-50 | -8.615850e-47 |
Msa0077340 | Msa0752450 | 0.837328 | 5.547519e-57 | -8.615850e-47 |
Msa0078120 | Msa0752450 | 0.821250 | 4.460896e-53 | -8.615850e-47 |
Msa0089980 | Msa0752450 | 0.830097 | 3.558116e-55 | -8.615850e-47 |
Msa0090010 | Msa0752450 | 0.831050 | 2.079070e-55 | -8.615850e-47 |
Msa0094780 | Msa0752450 | 0.806195 | 9.253640e-50 | -8.615850e-47 |
Msa0098040 | Msa0752450 | 0.838661 | 2.518929e-57 | -8.615850e-47 |
Msa0106620 | Msa0752450 | 0.814990 | 1.162845e-51 | -8.615850e-47 |
Msa0108410 | Msa0752450 | 0.833652 | 4.715309e-56 | -8.615850e-47 |
Msa0607320 | Msa0752450 | 0.801234 | 9.914065e-49 | -8.615850e-47 |
Msa0626460 | Msa0752450 | 0.822195 | 2.697491e-53 | -8.615850e-47 |
Msa0630770 | Msa0752450 | -0.808020 | 3.802653e-50 | -8.615850e-47 |
Msa0651550 | Msa0752450 | 0.800446 | 1.435823e-48 | -8.615850e-47 |
Msa0651560 | Msa0752450 | 0.801982 | 6.963560e-49 | -8.615850e-47 |
Msa0652770 | Msa0752450 | 0.800510 | 1.393613e-48 | -8.615850e-47 |
Msa0664540 | Msa0752450 | 0.814869 | 1.236912e-51 | -8.615850e-47 |
Msa0674480 | Msa0752450 | 0.822618 | 2.151140e-53 | -8.615850e-47 |
Msa0693330 | Msa0752450 | 0.842889 | 1.962463e-58 | -8.615850e-47 |
Msa0702720 | Msa0752450 | 0.827082 | 1.904299e-54 | -8.615850e-47 |
Msa0706230 | Msa0752450 | 0.815705 | 8.062158e-52 | -8.615850e-47 |
Msa0729270 | Msa0752450 | 0.803658 | 3.138036e-49 | -8.615850e-47 |
Msa0733010 | Msa0752450 | 0.832679 | 8.239428e-56 | -8.615850e-47 |
Msa0734250 | Msa0752450 | 0.809382 | 1.944884e-50 | -8.615850e-47 |
Msa0738240 | Msa0752450 | 0.823176 | 1.594625e-53 | -8.615850e-47 |
Msa0752450 | Msa0769690 | 0.808398 | 3.159217e-50 | -8.615850e-47 |
Msa0752450 | Msa0773990 | 0.806039 | 9.984057e-50 | -8.615850e-47 |
Msa0752450 | Msa0780570 | 0.820526 | 6.547426e-53 | -8.615850e-47 |
Msa0752450 | Msa0786370 | 0.813267 | 2.790903e-51 | -8.615850e-47 |
Msa0752450 | Msa0792370 | 0.826072 | 3.314578e-54 | -8.615850e-47 |
Msa0752450 | Msa0795750 | 0.814430 | 1.546629e-51 | -8.615850e-47 |
Msa0752450 | Msa0795870 | 0.808501 | 3.002317e-50 | -8.615850e-47 |
Msa0752450 | Msa0822730 | 0.826346 | 2.853877e-54 | -8.615850e-47 |
Msa0752450 | Msa0829330 | 0.814020 | 1.905746e-51 | -8.615850e-47 |
Msa0752450 | Msa0830660 | 0.811257 | 7.665642e-51 | -8.615850e-47 |
Msa0752450 | Msa0833530 | 0.836131 | 1.120114e-56 | -8.615850e-47 |
Msa0752450 | Msa0833650 | 0.809347 | 1.978712e-50 | -8.615850e-47 |
Msa0752450 | Msa0855870 | 0.898376 | 5.639600e-77 | -8.615850e-47 |
Msa0752450 | Msa0858120 | 0.808067 | 3.714929e-50 | -8.615850e-47 |
Msa0752450 | Msa0879930 | 0.812660 | 3.792061e-51 | -8.615850e-47 |
Msa0752450 | Msa0933760 | 0.820790 | 5.693048e-53 | -8.615850e-47 |
Msa0752450 | Msa0934140 | 0.818467 | 1.930727e-52 | -8.615850e-47 |
Msa0752450 | Msa0945190 | 0.802899 | 4.507154e-49 | -8.615850e-47 |
Msa0752450 | Msa0967870 | 0.801438 | 9.002404e-49 | -8.615850e-47 |
Msa0752450 | Msa0971650 | 0.809110 | 2.224506e-50 | -8.615850e-47 |
Msa0752450 | Msa1002960 | 0.823405 | 1.409735e-53 | -8.615850e-47 |
Msa0752450 | Msa1021590 | 0.822273 | 2.586922e-53 | -8.615850e-47 |
Msa0752450 | Msa1034500 | 0.829215 | 5.830579e-55 | -8.615850e-47 |
Msa0752450 | Msa1044680 | 0.819401 | 1.183943e-52 | -8.615850e-47 |
Msa0752450 | Msa1074220 | 0.802172 | 6.364101e-49 | -8.615850e-47 |
Msa0752450 | Msa1087650 | 0.803007 | 4.280812e-49 | -8.615850e-47 |
Msa0752450 | Msa1089450 | 0.830030 | 3.694055e-55 | -8.615850e-47 |
Msa0752450 | Msa1101880 | 0.820476 | 6.723840e-53 | -8.615850e-47 |
Msa0752450 | Msa1105640 | 0.801566 | 8.475539e-49 | -8.615850e-47 |
Msa0752450 | Msa1106590 | 0.815335 | 9.746593e-52 | -8.615850e-47 |
Msa0752450 | Msa1111380 | 0.830869 | 2.303406e-55 | -8.615850e-47 |
Msa0752450 | Msa1132840 | 0.813570 | 2.393554e-51 | -8.615850e-47 |
Msa0752450 | Msa1145580 | 0.806265 | 8.944578e-50 | -8.615850e-47 |
Msa0752450 | Msa1155170 | -0.842404 | 2.639821e-58 | -8.615850e-47 |
Msa0752450 | Msa1170760 | 0.816786 | 4.622189e-52 | -8.615850e-47 |
Msa0752450 | Msa1211230 | -0.815609 | 8.467895e-52 | -8.615850e-47 |
Msa0752450 | Msa1213040 | 0.806666 | 7.363936e-50 | -8.615850e-47 |
Msa0752450 | Msa1213890 | 0.808985 | 2.366544e-50 | -8.615850e-47 |
Msa0752450 | Msa1213980 | 0.800363 | 1.492464e-48 | -8.615850e-47 |
Msa0752450 | Msa1225860 | -0.853565 | 2.196441e-61 | -8.615850e-47 |
Msa0752450 | Msa1226460 | 0.801885 | 7.291539e-49 | -8.615850e-47 |
Msa0752450 | Msa1228040 | 0.832171 | 1.100642e-55 | -8.615850e-47 |
Msa0752450 | Msa1236110 | -0.802447 | 5.587190e-49 | -8.615850e-47 |
Msa0752450 | Msa1265650 | 0.814467 | 1.517679e-51 | -8.615850e-47 |
Msa0752450 | Msa1271130 | 0.816005 | 6.911821e-52 | -8.615850e-47 |
Msa0752450 | Msa1299400 | -0.827393 | 1.604081e-54 | -8.615850e-47 |
Msa0752450 | Msa1303560 | 0.840670 | 7.559535e-58 | -8.615850e-47 |
Msa0752450 | Msa1303650 | 0.832951 | 7.049686e-56 | -8.615850e-47 |
Msa0752450 | Msa1308220 | 0.826895 | 2.110129e-54 | -8.615850e-47 |
Msa0752450 | Msa1319560 | 0.804446 | 2.152285e-49 | -8.615850e-47 |
Msa0752450 | Msa1325410 | -0.817025 | 4.084414e-52 | -8.615850e-47 |
Msa0752450 | Msa1331050 | -0.815587 | 8.566909e-52 | -8.615850e-47 |
Msa0752450 | Msa1340200 | 0.850321 | 1.830971e-60 | -8.615850e-47 |
Msa0752450 | Msa1341840 | 0.826959 | 2.036831e-54 | -8.615850e-47 |
Msa0752450 | Msa1346560 | 0.808956 | 2.399877e-50 | -8.615850e-47 |
Msa0752450 | Msa1355450 | 0.821219 | 4.535742e-53 | -8.615850e-47 |
Msa0752450 | Msa1371520 | 0.802562 | 5.288214e-49 | -8.615850e-47 |
Msa0752450 | Msa1382300 | 0.843076 | 1.750321e-58 | -8.615850e-47 |
Msa0752450 | Msa1393820 | 0.807076 | 6.029882e-50 | -8.615850e-47 |
Msa0752450 | Msa1403710 | 0.834982 | 2.186936e-56 | -8.615850e-47 |
Msa0752450 | Msa1405460 | 0.831294 | 1.811089e-55 | -8.615850e-47 |
Msa0752450 | Msa1407750 | 0.809105 | 2.230559e-50 | -8.615850e-47 |
Msa0752450 | Msa1407840 | 0.805675 | 1.190700e-49 | -8.615850e-47 |
Msa0752450 | Msa1412000 | 0.805869 | 1.084078e-49 | -8.615850e-47 |
Msa0752450 | Msa1427100 | 0.817249 | 3.637499e-52 | -8.615850e-47 |
Msa0752450 | Msa1437810 | 0.802008 | 6.876942e-49 | -8.615850e-47 |
Msa0752450 | Msa1440900 | 0.800677 | 1.288216e-48 | -8.615850e-47 |
Msa0752450 | Msa1461370 | 0.811554 | 6.607022e-51 | -8.615850e-47 |
Msa0752450 | Msa1464090 | 0.841369 | 4.954288e-58 | -8.615850e-47 |
Msa0120990 | Msa0752450 | 0.822652 | 2.112023e-53 | -8.615850e-47 |
Msa0126040 | Msa0752450 | 0.816728 | 4.761180e-52 | -8.615850e-47 |
Msa0152850 | Msa0752450 | 0.802143 | 6.453013e-49 | -8.615850e-47 |
Msa0173800 | Msa0752450 | 0.825497 | 4.538578e-54 | -8.615850e-47 |
Msa0183760 | Msa0752450 | 0.816685 | 4.869028e-52 | -8.615850e-47 |
Msa0186010 | Msa0752450 | 0.801664 | 8.092181e-49 | -8.615850e-47 |
Msa0223340 | Msa0752450 | 0.800241 | 1.580417e-48 | -8.615850e-47 |
Msa0225100 | Msa0752450 | 0.817125 | 3.878348e-52 | -8.615850e-47 |
Msa0225480 | Msa0752450 | 0.827836 | 1.255409e-54 | -8.615850e-47 |
Msa0237210 | Msa0752450 | 0.820259 | 7.538413e-53 | -8.615850e-47 |
Msa0369790 | Msa0752450 | 0.803917 | 2.772424e-49 | -8.615850e-47 |
Msa0403640 | Msa0752450 | 0.803709 | 3.063023e-49 | -8.615850e-47 |
Msa0412790 | Msa0752450 | 0.839613 | 1.426850e-57 | -8.615850e-47 |
Msa0423550 | Msa0752450 | 0.839840 | 1.245587e-57 | -8.615850e-47 |
Msa0426430 | Msa0752450 | 0.807293 | 5.425350e-50 | -8.615850e-47 |
Msa0428920 | Msa0752450 | 0.813910 | 2.014775e-51 | -8.615850e-47 |
Msa0432160 | Msa0752450 | 0.811527 | 6.695046e-51 | -8.615850e-47 |
Msa0436910 | Msa0752450 | 0.804369 | 2.232818e-49 | -8.615850e-47 |
Msa0450400 | Msa0752450 | -0.835526 | 1.593952e-56 | -8.615850e-47 |
Msa0464000 | Msa0752450 | 0.801513 | 8.690943e-49 | -8.615850e-47 |
Msa0465500 | Msa0752450 | 0.823762 | 1.163414e-53 | -8.615850e-47 |
Msa0473050 | Msa0752450 | 0.810056 | 1.393229e-50 | -8.615850e-47 |
Msa0476680 | Msa0752450 | 0.816409 | 5.613371e-52 | -8.615850e-47 |
Msa0240900 | Msa0752450 | 0.836556 | 8.729712e-57 | -8.615850e-47 |
Msa0244640 | Msa0752450 | 0.875985 | 1.999857e-68 | -8.615850e-47 |
Msa0251710 | Msa0752450 | 0.824330 | 8.559146e-54 | -8.615850e-47 |
Msa0263230 | Msa0752450 | 0.814248 | 1.697031e-51 | -8.615850e-47 |
Msa0266180 | Msa0752450 | 0.823687 | 1.211127e-53 | -8.615850e-47 |
Msa0274980 | Msa0752450 | 0.813253 | 2.811004e-51 | -8.615850e-47 |
Msa0283330 | Msa0752450 | 0.852906 | 3.395034e-61 | -8.615850e-47 |
Msa0287740 | Msa0752450 | 0.810383 | 1.184491e-50 | -8.615850e-47 |
Msa0288010 | Msa0752450 | -0.801701 | 7.952533e-49 | -8.615850e-47 |
Msa0288620 | Msa0752450 | 0.812127 | 4.956971e-51 | -8.615850e-47 |
Msa0298410 | Msa0752450 | 0.807339 | 5.306009e-50 | -8.615850e-47 |
Msa0307670 | Msa0752450 | 0.830179 | 3.396601e-55 | -8.615850e-47 |
Msa0309970 | Msa0752450 | 0.812467 | 4.178395e-51 | -8.615850e-47 |
Msa0315690 | Msa0752450 | 0.828291 | 9.756762e-55 | -8.615850e-47 |
Msa0317970 | Msa0752450 | 0.818835 | 1.593265e-52 | -8.615850e-47 |
Msa0320590 | Msa0752450 | 0.800662 | 1.297393e-48 | -8.615850e-47 |
Msa0321620 | Msa0752450 | 0.841203 | 5.478889e-58 | -8.615850e-47 |
Msa0336110 | Msa0752450 | 0.815133 | 1.080606e-51 | -8.615850e-47 |
Msa0511440 | Msa0752450 | 0.833493 | 5.165667e-56 | -8.615850e-47 |
Msa0519750 | Msa0752450 | 0.834569 | 2.778332e-56 | -8.615850e-47 |
Msa0519820 | Msa0752450 | 0.829616 | 4.658669e-55 | -8.615850e-47 |
Msa0519830 | Msa0752450 | 0.829234 | 5.768841e-55 | -8.615850e-47 |
Msa0521010 | Msa0752450 | 0.815913 | 7.246238e-52 | -8.615850e-47 |
Msa0522150 | Msa0752450 | 0.800380 | 1.481050e-48 | -8.615850e-47 |
Msa0527190 | Msa0752450 | 0.806933 | 6.466753e-50 | -8.615850e-47 |
Msa0529030 | Msa0752450 | 0.827869 | 1.232700e-54 | -8.615850e-47 |
Msa0553200 | Msa0752450 | 0.805197 | 1.499254e-49 | -8.615850e-47 |
Msa0567380 | Msa0752450 | 0.803698 | 3.079333e-49 | -8.615850e-47 |
Msa0570120 | Msa0752450 | 0.804052 | 2.598754e-49 | -8.615850e-47 |
Msa0576790 | Msa0752450 | 0.816008 | 6.898410e-52 | -8.615850e-47 |
Msa0580370 | Msa0752450 | 0.808691 | 2.735429e-50 | -8.615850e-47 |
Msa0583360 | Msa0752450 | -0.854491 | 1.188057e-61 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0752450 | MtrunA17_Chr5g0393391 | 93.243 | 740 | 26 | 6 | 1 | 731 | 1 | 725 | 0.0 | 1206 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0752450 | AT5G25070.1 | 44.695 | 754 | 364 | 11 | 3 | 726 | 1 | 731 | 7.83e-169 | 503 |
Find 155 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTCCGCTGGTTGTTCAATT+TGG | 0.072315 | 5_2:-6099486 | None:intergenic |
CTTCACAAGCTTGTTCTAAT+TGG | 0.219788 | 5_2:-6100134 | None:intergenic |
AAGAAACGTTCCAGAAAATA+AGG | 0.230695 | 5_2:+6099971 | Msa0752450:CDS |
CATAACATGTATCACAAAAT+TGG | 0.238322 | 5_2:-6102820 | None:intergenic |
CGGAAGACATTTCAAATTTA+CGG | 0.241495 | 5_2:+6102631 | Msa0752450:CDS |
CTTCGACATCACCCATTTCT+TGG | 0.247970 | 5_2:-6102530 | None:intergenic |
CTCCGCTGGTTGTTCAATTT+GGG | 0.269064 | 5_2:-6099485 | None:intergenic |
GATTGAGTTGGAATTGGAAT+TGG | 0.272434 | 5_2:+6099381 | Msa0752450:five_prime_UTR |
TGCTGCCAGAGCTTCCTTGC+AGG | 0.286964 | 5_2:+6101484 | Msa0752450:CDS |
ATTTAGCCTCACTAGCTATT+CGG | 0.313696 | 5_2:-6102299 | None:intergenic |
ATATATATTGTGTACGATAT+TGG | 0.337605 | 5_2:+6102858 | Msa0752450:three_prime_UTR |
ATTGAGTTGGAATTGGAATT+GGG | 0.344071 | 5_2:+6099382 | Msa0752450:five_prime_UTR |
CAATGATGTTGCTTTCTTCA+TGG | 0.350218 | 5_2:-6100844 | None:intergenic |
CATGGAAGGTGGCGGAGATA+TGG | 0.351142 | 5_2:+6099423 | Msa0752450:CDS |
CTTCTTCAGTGACAGAGTTT+CGG | 0.353431 | 5_2:-6101240 | None:intergenic |
AATTGATAACCTTCTCGTTC+AGG | 0.357533 | 5_2:+6101268 | Msa0752450:CDS |
AAGCTTGAGGAAGAAATTAA+AGG | 0.359557 | 5_2:+6102384 | Msa0752450:CDS |
GAAAATAATCCTCTGCTTGA+AGG | 0.366556 | 5_2:-6102202 | None:intergenic |
ACGGAAAGATTTGATTTCAA+TGG | 0.376880 | 5_2:+6102650 | Msa0752450:CDS |
TGAAGGATGCTATGTCTTGC+TGG | 0.381178 | 5_2:-6102185 | None:intergenic |
TGTATTGATTGAGTTGGAAT+TGG | 0.381748 | 5_2:+6099375 | Msa0752450:five_prime_UTR |
CAAATCTAAAGCATCGATAA+AGG | 0.394085 | 5_2:-6100253 | None:intergenic |
GAGTGTGCTAATGGATGAAT+TGG | 0.396769 | 5_2:+6101040 | Msa0752450:CDS |
AAAAGCAGCTGCCCAAGAAA+TGG | 0.401381 | 5_2:+6102518 | Msa0752450:CDS |
GGTTGTTCAATTTGGGCAGC+AGG | 0.401748 | 5_2:-6099478 | None:intergenic |
TTCTTCTCCTCCTCCTCCGC+TGG | 0.406323 | 5_2:-6099499 | None:intergenic |
TTCGACATCACCCATTTCTT+GGG | 0.407089 | 5_2:-6102529 | None:intergenic |
TAACATTGAGCTTTCAATAG+AGG | 0.407824 | 5_2:+6100980 | Msa0752450:CDS |
AGTACTAACGACGAGGGAAT+CGG | 0.409750 | 5_2:-6099812 | None:intergenic |
AAGATAAATAATGTCGTCTC+TGG | 0.411416 | 5_2:+6101140 | Msa0752450:CDS |
TTTAGCCTCACTAGCTATTC+GGG | 0.411756 | 5_2:-6102298 | None:intergenic |
TCAACCATTGAGGTGAAGTA+TGG | 0.417837 | 5_2:+6101179 | Msa0752450:CDS |
AGGCACCCTTGATAAATTGC+AGG | 0.418273 | 5_2:+6102404 | Msa0752450:CDS |
AAAGAATGGGAGCAAAACTT+AGG | 0.430881 | 5_2:+6101294 | Msa0752450:CDS |
TACTATCACTAGATGGTTGT+TGG | 0.432236 | 5_2:-6099840 | None:intergenic |
AGGAGGAAGCTAAAGGATAC+AGG | 0.435555 | 5_2:+6101336 | Msa0752450:CDS |
TAAAAGAAAGAGTGTGCTAA+TGG | 0.437544 | 5_2:+6101031 | Msa0752450:CDS |
ATCAGCTTGTCTCAATGATT+CGG | 0.437966 | 5_2:-6100229 | None:intergenic |
CAGTCTCCTGCAATTTATCA+AGG | 0.444642 | 5_2:-6102410 | None:intergenic |
GTACTAACGACGAGGGAATC+GGG | 0.448073 | 5_2:-6099811 | None:intergenic |
CAAAACTTAGGGAATTTGCT+AGG | 0.448557 | 5_2:+6101306 | Msa0752450:CDS |
ATTAACCTGCAAGGAAGCTC+TGG | 0.449548 | 5_2:-6101489 | None:intergenic |
GGATTCACTGTTTGAAGGGA+TGG | 0.449967 | 5_2:+6099444 | Msa0752450:CDS |
GAAGCTGATGCAGCTGCTGC+AGG | 0.450176 | 5_2:-6099550 | None:intergenic |
CGTTGATGTTGATGTTGATC+TGG | 0.451602 | 5_2:+6099744 | Msa0752450:CDS |
CTCTGCATCTTCTGCTCGAA+AGG | 0.452472 | 5_2:+6100038 | Msa0752450:CDS |
AAACACTGTATTGATTGAGT+TGG | 0.466731 | 5_2:+6099369 | Msa0752450:five_prime_UTR |
TCTCGTTCAGGAAGAAAGAA+TGG | 0.469047 | 5_2:+6101280 | Msa0752450:CDS |
TCGATCAACATACAATTTCA+AGG | 0.470108 | 5_2:+6102608 | Msa0752450:CDS |
AACAATGAAGAAAAGCTCTC+TGG | 0.470326 | 5_2:+6101431 | Msa0752450:CDS |
CGAAACTCTGTCACTGAAGA+AGG | 0.470630 | 5_2:+6101241 | Msa0752450:CDS |
TCTTGCTTCTCTTAAATACA+TGG | 0.470663 | 5_2:+6100101 | Msa0752450:CDS |
ATGTCATCTATACTGAAGTC+CGG | 0.471801 | 5_2:+6101386 | Msa0752450:CDS |
TCCTTCTCCTTCTCCTTCGC+CGG | 0.472966 | 5_2:+6099774 | Msa0752450:CDS |
TACTGCTGCAAGGAATTTCA+AGG | 0.474319 | 5_2:+6102269 | Msa0752450:CDS |
TCTGGCTTGAGGATAGGTTA+TGG | 0.475732 | 5_2:+6099703 | Msa0752450:CDS |
ACGAGGGAATCGGGAATATG+AGG | 0.480087 | 5_2:-6099802 | None:intergenic |
TTTGCCATACTTCACCTCAA+TGG | 0.480113 | 5_2:-6101183 | None:intergenic |
ATCATTGCATTCAAAAGAAG+TGG | 0.482215 | 5_2:+6100860 | Msa0752450:CDS |
ATCAATGGAGGTGGTGGTGG+TGG | 0.484371 | 5_2:-6099878 | None:intergenic |
TGAACAACCAGCGGAGGAGG+AGG | 0.489095 | 5_2:+6099492 | Msa0752450:CDS |
TCACTAGTACTATCACTAGA+TGG | 0.489482 | 5_2:-6099847 | None:intergenic |
AAAGCAGCTGCCCAAGAAAT+GGG | 0.490454 | 5_2:+6102519 | Msa0752450:CDS |
CAGCCTCAGCTTCTGCAAGC+AGG | 0.491844 | 5_2:-6102563 | None:intergenic |
GCGGATCGACGACGAGGGTG+AGG | 0.494709 | 5_2:-6099609 | None:intergenic |
AGAAGTGAAATTGTTTCAGC+AGG | 0.495187 | 5_2:+6101454 | Msa0752450:CDS |
AACATCAATGGAGGTGGTGG+TGG | 0.495643 | 5_2:-6099881 | None:intergenic |
CTGCTCGAAAGGATGCCATC+AGG | 0.495792 | 5_2:+6100049 | Msa0752450:CDS |
ATATACTGACCGTTGCATAA+TGG | 0.498069 | 5_2:-6100338 | None:intergenic |
TGGCCGTATCCATTCCCATC+TGG | 0.499665 | 5_2:-6102347 | None:intergenic |
AGCACCTCAAATATTAAAAG+TGG | 0.503960 | 5_2:-6102890 | None:intergenic |
TGAGGGAATGATCTTATTGA+AGG | 0.505500 | 5_2:+6102431 | Msa0752450:CDS |
AATTGAACAACCAGCGGAGG+AGG | 0.507192 | 5_2:+6099489 | Msa0752450:CDS |
ACTATCACTAGATGGTTGTT+GGG | 0.511746 | 5_2:-6099839 | None:intergenic |
GGCCTTTCTTCTACTCCTGA+TGG | 0.515837 | 5_2:-6100064 | None:intergenic |
TGTCATCTATACTGAAGTCC+GGG | 0.516629 | 5_2:+6101387 | Msa0752450:CDS |
GATATGGATTCACTGTTTGA+AGG | 0.517172 | 5_2:+6099439 | Msa0752450:CDS |
AGAAACGTTCCAGAAAATAA+GGG | 0.517394 | 5_2:+6099972 | Msa0752450:CDS |
TTCATCATCAGAAGCCTTGG+AGG | 0.517836 | 5_2:+6100893 | Msa0752450:CDS |
AAGAATGGGAGCAAAACTTA+GGG | 0.522281 | 5_2:+6101295 | Msa0752450:CDS |
GGAGGAGCCGGCGAAGGAGA+AGG | 0.524720 | 5_2:-6099781 | None:intergenic |
TGCCATCAGGAGTAGAAGAA+AGG | 0.526891 | 5_2:+6100062 | Msa0752450:CDS |
TGTTGATGTTGATCTGGATG+TGG | 0.531937 | 5_2:+6099750 | Msa0752450:CDS |
GTTGTTCAATTTGGGCAGCA+GGG | 0.533020 | 5_2:-6099477 | None:intergenic |
TTCGAATCTTGAAAAGCTTG+AGG | 0.533399 | 5_2:+6102371 | Msa0752450:CDS |
ACACCTTTCTGCCGCTGAGA+AGG | 0.535473 | 5_2:+6100191 | Msa0752450:CDS |
AGCAACATCAATGGAGGTGG+TGG | 0.537145 | 5_2:-6099884 | None:intergenic |
AAAACTTAGGGAATTTGCTA+GGG | 0.538995 | 5_2:+6101307 | Msa0752450:CDS |
GGAATTTGCTAGGGTTTCTG+AGG | 0.541022 | 5_2:+6101316 | Msa0752450:CDS |
TGTCCTTCTCAGCGGCAGAA+AGG | 0.542611 | 5_2:-6100194 | None:intergenic |
AAACGATCTGGCTTGAGGAT+AGG | 0.543009 | 5_2:+6099697 | Msa0752450:CDS |
CTCGTTCAGGAAGAAAGAAT+GGG | 0.543231 | 5_2:+6101281 | Msa0752450:CDS |
AAGTCTCAGTTTATCCTCCC+CGG | 0.543354 | 5_2:-6101405 | None:intergenic |
AGAGAATATCCAGATGGGAA+TGG | 0.545530 | 5_2:+6102338 | Msa0752450:CDS |
ATTGAGATTGAAGAAGATCA+TGG | 0.546555 | 5_2:-6099642 | None:intergenic |
ATATGGATTCACTGTTTGAA+GGG | 0.547035 | 5_2:+6099440 | Msa0752450:CDS |
AACAGCAGGAGCAACATCAA+TGG | 0.549336 | 5_2:-6099893 | None:intergenic |
TCGGGAATATGAGGAGGAGC+CGG | 0.553209 | 5_2:-6099793 | None:intergenic |
TATCCAGATGGGAATGGATA+CGG | 0.554363 | 5_2:+6102344 | Msa0752450:CDS |
TTCTTTCTTCCTGAACGAGA+AGG | 0.555128 | 5_2:-6101277 | None:intergenic |
AGAGATTCAGTCAACCATTG+AGG | 0.558406 | 5_2:+6101169 | Msa0752450:CDS |
CAGAGAAGGAGAAAACGATC+TGG | 0.560854 | 5_2:+6099685 | Msa0752450:CDS |
GTTTCTGAGGAGGAAGCTAA+AGG | 0.564591 | 5_2:+6101329 | Msa0752450:CDS |
TTGAGTTGGAATTGGAATTG+GGG | 0.567028 | 5_2:+6099383 | Msa0752450:five_prime_UTR |
TCTCAGCGGCAGAAAGGTGT+TGG | 0.569864 | 5_2:-6100188 | None:intergenic |
TGATAAATTGCAGGAGACTG+AGG | 0.570191 | 5_2:+6102413 | Msa0752450:CDS |
AGAGAAGATATTCTCGTCAA+GGG | 0.574979 | 5_2:-6099584 | None:intergenic |
ATTTGCTAGGGTTTCTGAGG+AGG | 0.580411 | 5_2:+6101319 | Msa0752450:CDS |
ATTCAAAAGAAGTGGAACAA+TGG | 0.580518 | 5_2:+6100868 | Msa0752450:CDS |
TGAGTTGGAATTGGAATTGG+GGG | 0.580905 | 5_2:+6099384 | Msa0752450:five_prime_UTR |
AGCAGCTATGTGAGAGTCGA+GGG | 0.583434 | 5_2:-6100289 | None:intergenic |
GCCGGCGAAGGAGAAGGAGA+AGG | 0.583638 | 5_2:-6099775 | None:intergenic |
CAGAGAAGATATTCTCGTCA+AGG | 0.589682 | 5_2:-6099585 | None:intergenic |
GGAGAAAACGATCTGGCTTG+AGG | 0.590628 | 5_2:+6099692 | Msa0752450:CDS |
TGAGAAAGAGAATATCCAGA+TGG | 0.592249 | 5_2:+6102332 | Msa0752450:CDS |
CGAATCTGAATGAACATGGA+AGG | 0.596912 | 5_2:+6099409 | Msa0752450:exon |
GAGAGTTCCAGAACTTGAAG+CGG | 0.597506 | 5_2:+6102233 | Msa0752450:CDS |
ATATGAGGAGGAGCCGGCGA+AGG | 0.598171 | 5_2:-6099787 | None:intergenic |
CGACTCTCACATAGCTGCTG+AGG | 0.598674 | 5_2:+6100293 | Msa0752450:CDS |
AGTTGAGCAGTTGACGAGCA+TGG | 0.600096 | 5_2:-6100017 | None:intergenic |
TACTGACCGTTGCATAATGG+TGG | 0.601422 | 5_2:-6100335 | None:intergenic |
GGATCGAATCTGAATGAACA+TGG | 0.603041 | 5_2:+6099405 | Msa0752450:exon |
GAGAAAGAGAATATCCAGAT+GGG | 0.606890 | 5_2:+6102333 | Msa0752450:CDS |
AGGAGCAACATCAATGGAGG+TGG | 0.607030 | 5_2:-6099887 | None:intergenic |
GATAAATTGCAGGAGACTGA+GGG | 0.609466 | 5_2:+6102414 | Msa0752450:CDS |
CTTCGCACCAACATCAGAGA+AGG | 0.609487 | 5_2:+6099671 | Msa0752450:CDS |
AGCAAGATTAGAATTCTGAA+AGG | 0.612744 | 5_2:-6100085 | None:intergenic |
AGTCTCCTGCAATTTATCAA+GGG | 0.623518 | 5_2:-6102409 | None:intergenic |
TCTCCTGCTTGCAGAAGCTG+AGG | 0.624719 | 5_2:+6102560 | Msa0752450:CDS |
GTAGCGCTAACACTAACAGC+AGG | 0.633509 | 5_2:-6099907 | None:intergenic |
ACATAGCATCCTTCAAGCAG+AGG | 0.634177 | 5_2:+6102193 | Msa0752450:CDS |
CAGCAGCTATGTGAGAGTCG+AGG | 0.634230 | 5_2:-6100290 | None:intergenic |
AGTACAAGAATTAACCTGCA+AGG | 0.635054 | 5_2:-6101498 | None:intergenic |
ATCTGAATGAACATGGAAGG+TGG | 0.639736 | 5_2:+6099412 | Msa0752450:exon |
GTGTTGGCTAACCATTTCAG+CGG | 0.645187 | 5_2:-6100172 | None:intergenic |
CAGATCAACATCAACATCAA+CGG | 0.649855 | 5_2:-6099743 | None:intergenic |
GAAGGAGAAAGAGTTAGCAA+TGG | 0.653490 | 5_2:+6102449 | Msa0752450:CDS |
TTGAAGCGGATCGACGACGA+GGG | 0.659046 | 5_2:-6099614 | None:intergenic |
AGGGAATCGGGAATATGAGG+AGG | 0.659914 | 5_2:-6099799 | None:intergenic |
TGAATGAACATGGAAGGTGG+CGG | 0.662329 | 5_2:+6099415 | Msa0752450:exon |
TGCCCAAATTGAACAACCAG+CGG | 0.662559 | 5_2:+6099483 | Msa0752450:CDS |
GAGAAGATATTCTCGTCAAG+GGG | 0.662637 | 5_2:-6099583 | None:intergenic |
GGAGGAAGCTAAAGGATACA+GGG | 0.664518 | 5_2:+6101337 | Msa0752450:CDS |
AGCAGGAGCAACATCAATGG+AGG | 0.665368 | 5_2:-6099890 | None:intergenic |
GGCTGCCCGAATAGCTAGTG+AGG | 0.669487 | 5_2:+6102293 | Msa0752450:CDS |
TTTGAAGCGGATCGACGACG+AGG | 0.674654 | 5_2:-6099615 | None:intergenic |
CCAAATTGAACAACCAGCGG+AGG | 0.674887 | 5_2:+6099486 | Msa0752450:CDS |
GATTTGTTTGTCCTTCTCAG+CGG | 0.680058 | 5_2:-6100202 | None:intergenic |
GTCATCTATACTGAAGTCCG+GGG | 0.682251 | 5_2:+6101388 | Msa0752450:CDS |
ATTACTCCACCATTATGCAA+CGG | 0.686615 | 5_2:+6100329 | Msa0752450:CDS |
ATCAACATCAACATCAACGG+TGG | 0.714775 | 5_2:-6099740 | None:intergenic |
GGGTAACAGTACTAACGACG+AGG | 0.718979 | 5_2:-6099819 | None:intergenic |
GGTAACAGTACTAACGACGA+GGG | 0.735047 | 5_2:-6099818 | None:intergenic |
ATCAACATACAATTTCAAGG+CGG | 0.735712 | 5_2:+6102611 | Msa0752450:CDS |
TGCTGCAAGGAATTTCAAGG+AGG | 0.736309 | 5_2:+6102272 | Msa0752450:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CTATAGTAATAAATAAAAAT+AGG | - | chr5_2:6101852-6101871 | None:intergenic | 10.0% |
!! | AGGAATTTATTTATATCATT+GGG | - | chr5_2:6100570-6100589 | None:intergenic | 15.0% |
!! | AAGGAATTTATTTATATCAT+TGG | - | chr5_2:6100571-6100590 | None:intergenic | 15.0% |
!!! | ACTAATATCATTTTTAAGTT+GGG | - | chr5_2:6102927-6102946 | None:intergenic | 15.0% |
!!! | TACTAATATCATTTTTAAGT+TGG | - | chr5_2:6102928-6102947 | None:intergenic | 15.0% |
!!! | AATCTTATTTAATTGCTCTA+TGG | + | chr5_2:6100663-6100682 | Msa0752450:intron | 20.0% |
!!! | ATCTTATTTAATTGCTCTAT+GGG | + | chr5_2:6100664-6100683 | Msa0752450:intron | 20.0% |
!! | TACAAAATTATACAAAAGGA+TGG | - | chr5_2:6100718-6100737 | None:intergenic | 20.0% |
!! | CAGATACAAAATTATACAAA+AGG | - | chr5_2:6100722-6100741 | None:intergenic | 20.0% |
!! | TATTGTTAAAAACGTCTTAA+TGG | + | chr5_2:6102018-6102037 | Msa0752450:intron | 20.0% |
!!! | TTTTATCAAGAATTGATACA+AGG | - | chr5_2:6102677-6102696 | None:intergenic | 20.0% |
!! | AATTCTTGATAAAAAGCAAT+TGG | + | chr5_2:6102683-6102702 | Msa0752450:CDS | 20.0% |
!!! | TTATCCAAACAAAATTTTAG+TGG | + | chr5_2:6102739-6102758 | Msa0752450:three_prime_UTR | 20.0% |
!!! | AAATCCACTAAAATTTTGTT+TGG | - | chr5_2:6102746-6102765 | None:intergenic | 20.0% |
!! | ATATATATTGTGTACGATAT+TGG | + | chr5_2:6102858-6102877 | Msa0752450:three_prime_UTR | 20.0% |
!!! | TTTACCACTTTTAATATTTG+AGG | + | chr5_2:6102886-6102905 | Msa0752450:three_prime_UTR | 20.0% |
!!! | TAATATCATTTTTAAGTTGG+GGG | - | chr5_2:6102925-6102944 | None:intergenic | 20.0% |
!!! | CTAATATCATTTTTAAGTTG+GGG | - | chr5_2:6102926-6102945 | None:intergenic | 20.0% |
!!! | TTTTAGTTCCTCTAAAAGAA+TGG | + | chr5_2:6100533-6100552 | Msa0752450:intron | 25.0% |
!! | TCTTATTTAATTGCTCTATG+GGG | + | chr5_2:6100665-6100684 | Msa0752450:intron | 25.0% |
!! | ATAATTTTGTATCTGTTTGC+TGG | + | chr5_2:6100727-6100746 | Msa0752450:intron | 25.0% |
!!! | TGTACTTATTTTTATGTGCT+TGG | + | chr5_2:6101515-6101534 | Msa0752450:intron | 25.0% |
! | GTCAATATCTCTAGATATAA+TGG | + | chr5_2:6101753-6101772 | Msa0752450:intron | 25.0% |
! | ATAAAACAATGACCAAAAAG+TGG | + | chr5_2:6101896-6101915 | Msa0752450:intron | 25.0% |
!!! | AATGTCATCACATTGTTTTT+AGG | + | chr5_2:6102137-6102156 | Msa0752450:intron | 25.0% |
! | CATAACATGTATCACAAAAT+TGG | - | chr5_2:6102823-6102842 | None:intergenic | 25.0% |
!! | AAACACTGTATTGATTGAGT+TGG | + | chr5_2:6099369-6099388 | Msa0752450:five_prime_UTR | 30.0% |
!! | TGTATTGATTGAGTTGGAAT+TGG | + | chr5_2:6099375-6099394 | Msa0752450:five_prime_UTR | 30.0% |
!! | ATTGAGTTGGAATTGGAATT+GGG | + | chr5_2:6099382-6099401 | Msa0752450:five_prime_UTR | 30.0% |
ATATGGATTCACTGTTTGAA+GGG | + | chr5_2:6099440-6099459 | Msa0752450:CDS | 30.0% | |
ATTGAGATTGAAGAAGATCA+TGG | - | chr5_2:6099645-6099664 | None:intergenic | 30.0% | |
AAGAAACGTTCCAGAAAATA+AGG | + | chr5_2:6099971-6099990 | Msa0752450:CDS | 30.0% | |
AGAAACGTTCCAGAAAATAA+GGG | + | chr5_2:6099972-6099991 | Msa0752450:CDS | 30.0% | |
AGCAAGATTAGAATTCTGAA+AGG | - | chr5_2:6100088-6100107 | None:intergenic | 30.0% | |
TCTTGCTTCTCTTAAATACA+TGG | + | chr5_2:6100101-6100120 | Msa0752450:CDS | 30.0% | |
!! | CAAATCTAAAGCATCGATAA+AGG | - | chr5_2:6100256-6100275 | None:intergenic | 30.0% |
! | TGACAAAGGCATATACTAAT+TGG | - | chr5_2:6100440-6100459 | None:intergenic | 30.0% |
AGAGGAACTAAAATTACACT+TGG | - | chr5_2:6100526-6100545 | None:intergenic | 30.0% | |
AAGCAAAGCTAAAATGCATA+AGG | - | chr5_2:6100590-6100609 | None:intergenic | 30.0% | |
! | TAGGCTCTTTATTTAAGTCA+TGG | + | chr5_2:6100760-6100779 | Msa0752450:intron | 30.0% |
! | ATTTACAGCATTCTAGAGAA+GGG | - | chr5_2:6100811-6100830 | None:intergenic | 30.0% |
! | TATTTACAGCATTCTAGAGA+AGG | - | chr5_2:6100812-6100831 | None:intergenic | 30.0% |
ATCATTGCATTCAAAAGAAG+TGG | + | chr5_2:6100860-6100879 | Msa0752450:CDS | 30.0% | |
ATTCAAAAGAAGTGGAACAA+TGG | + | chr5_2:6100868-6100887 | Msa0752450:CDS | 30.0% | |
TAACATTGAGCTTTCAATAG+AGG | + | chr5_2:6100980-6100999 | Msa0752450:CDS | 30.0% | |
! | TAAAAGAAAGAGTGTGCTAA+TGG | + | chr5_2:6101031-6101050 | Msa0752450:CDS | 30.0% |
AAGATAAATAATGTCGTCTC+TGG | + | chr5_2:6101140-6101159 | Msa0752450:CDS | 30.0% | |
!! | AAAACTTAGGGAATTTGCTA+GGG | + | chr5_2:6101307-6101326 | Msa0752450:CDS | 30.0% |
AAGCTATGTTAGGTGAATAT+AGG | + | chr5_2:6101621-6101640 | Msa0752450:intron | 30.0% | |
! | TTCCTCTGAAAGTAATAGTT+TGG | + | chr5_2:6101731-6101750 | Msa0752450:intron | 30.0% |
AATAGAAGAAATGCAACCAT+GGG | - | chr5_2:6101829-6101848 | None:intergenic | 30.0% | |
ACACTTATTCATTTCCTCAA+TGG | + | chr5_2:6101930-6101949 | Msa0752450:intron | 30.0% | |
CACTTATTCATTTCCTCAAT+GGG | + | chr5_2:6101931-6101950 | Msa0752450:intron | 30.0% | |
TTGCATGGAAAAAAACAAAC+AGG | - | chr5_2:6102092-6102111 | None:intergenic | 30.0% | |
AAGCTTGAGGAAGAAATTAA+AGG | + | chr5_2:6102384-6102403 | Msa0752450:CDS | 30.0% | |
TCGATCAACATACAATTTCA+AGG | + | chr5_2:6102608-6102627 | Msa0752450:CDS | 30.0% | |
ATCAACATACAATTTCAAGG+CGG | + | chr5_2:6102611-6102630 | Msa0752450:CDS | 30.0% | |
CGGAAGACATTTCAAATTTA+CGG | + | chr5_2:6102631-6102650 | Msa0752450:CDS | 30.0% | |
! | ACGGAAAGATTTGATTTCAA+TGG | + | chr5_2:6102650-6102669 | Msa0752450:CDS | 30.0% |
! | TGCTGCATTCAGTAATTTTT+AGG | - | chr5_2:6102793-6102812 | None:intergenic | 30.0% |
AGCACCTCAAATATTAAAAG+TGG | - | chr5_2:6102893-6102912 | None:intergenic | 30.0% | |
!! | GATTGAGTTGGAATTGGAAT+TGG | + | chr5_2:6099381-6099400 | Msa0752450:five_prime_UTR | 35.0% |
!! | TTGAGTTGGAATTGGAATTG+GGG | + | chr5_2:6099383-6099402 | Msa0752450:five_prime_UTR | 35.0% |
GATATGGATTCACTGTTTGA+AGG | + | chr5_2:6099439-6099458 | Msa0752450:CDS | 35.0% | |
AGAGAAGATATTCTCGTCAA+GGG | - | chr5_2:6099587-6099606 | None:intergenic | 35.0% | |
CAGATCAACATCAACATCAA+CGG | - | chr5_2:6099746-6099765 | None:intergenic | 35.0% | |
ACTATCACTAGATGGTTGTT+GGG | - | chr5_2:6099842-6099861 | None:intergenic | 35.0% | |
TACTATCACTAGATGGTTGT+TGG | - | chr5_2:6099843-6099862 | None:intergenic | 35.0% | |
TCACTAGTACTATCACTAGA+TGG | - | chr5_2:6099850-6099869 | None:intergenic | 35.0% | |
! | CTTCACAAGCTTGTTCTAAT+TGG | - | chr5_2:6100137-6100156 | None:intergenic | 35.0% |
!!! | AGATTTTGAAACCGCTGAAA+TGG | + | chr5_2:6100161-6100180 | Msa0752450:CDS | 35.0% |
ATCAGCTTGTCTCAATGATT+CGG | - | chr5_2:6100232-6100251 | None:intergenic | 35.0% | |
ATTACTCCACCATTATGCAA+CGG | + | chr5_2:6100329-6100348 | Msa0752450:CDS | 35.0% | |
ATATACTGACCGTTGCATAA+TGG | - | chr5_2:6100341-6100360 | None:intergenic | 35.0% | |
! | AATGCACTCCATTCTTTTAG+AGG | - | chr5_2:6100544-6100563 | None:intergenic | 35.0% |
ATCAACAAGTCTTCCAGTAA+TGG | - | chr5_2:6100622-6100641 | None:intergenic | 35.0% | |
!! | CAATGATGTTGCTTTCTTCA+TGG | - | chr5_2:6100847-6100866 | None:intergenic | 35.0% |
AGCCTTGGAGGTTAAAAAAA+TGG | + | chr5_2:6100905-6100924 | Msa0752450:CDS | 35.0% | |
!!! | CTCCATTTTTTTAACCTCCA+AGG | - | chr5_2:6100910-6100929 | None:intergenic | 35.0% |
GGAGGTTAAAAAAATGGAGT+TGG | + | chr5_2:6100911-6100930 | Msa0752450:CDS | 35.0% | |
! | GCACACTCTTTCTTTTACAA+AGG | - | chr5_2:6101028-6101047 | None:intergenic | 35.0% |
! | AATTGATAACCTTCTCGTTC+AGG | + | chr5_2:6101268-6101287 | Msa0752450:CDS | 35.0% |
AAAGAATGGGAGCAAAACTT+AGG | + | chr5_2:6101294-6101313 | Msa0752450:CDS | 35.0% | |
AAGAATGGGAGCAAAACTTA+GGG | + | chr5_2:6101295-6101314 | Msa0752450:CDS | 35.0% | |
! | CAAAACTTAGGGAATTTGCT+AGG | + | chr5_2:6101306-6101325 | Msa0752450:CDS | 35.0% |
ATGTCATCTATACTGAAGTC+CGG | + | chr5_2:6101386-6101405 | Msa0752450:CDS | 35.0% | |
AACAATGAAGAAAAGCTCTC+TGG | + | chr5_2:6101431-6101450 | Msa0752450:CDS | 35.0% | |
AGAAGTGAAATTGTTTCAGC+AGG | + | chr5_2:6101454-6101473 | Msa0752450:CDS | 35.0% | |
AGTACAAGAATTAACCTGCA+AGG | - | chr5_2:6101501-6101520 | None:intergenic | 35.0% | |
CAAATTAAAGGTAGGAGCTA+GGG | - | chr5_2:6101584-6101603 | None:intergenic | 35.0% | |
TCAAATTAAAGGTAGGAGCT+AGG | - | chr5_2:6101585-6101604 | None:intergenic | 35.0% | |
TGTCACGTCAAATTAAAGGT+AGG | - | chr5_2:6101592-6101611 | None:intergenic | 35.0% | |
TGGATGTCACGTCAAATTAA+AGG | - | chr5_2:6101596-6101615 | None:intergenic | 35.0% | |
GACCAAACTATTACTTTCAG+AGG | - | chr5_2:6101736-6101755 | None:intergenic | 35.0% | |
!!! | AGACAATTTTTTACCACCCA+TGG | + | chr5_2:6101810-6101829 | Msa0752450:intron | 35.0% |
GAATAGAAGAAATGCAACCA+TGG | - | chr5_2:6101830-6101849 | None:intergenic | 35.0% | |
!! | TTTGACATGTGTCCACTTTT+TGG | - | chr5_2:6101911-6101930 | None:intergenic | 35.0% |
!! | TCCTCAATGGGTTTTTACAT+AGG | + | chr5_2:6101943-6101962 | Msa0752450:intron | 35.0% |
ACCTATGTAAAAACCCATTG+AGG | - | chr5_2:6101947-6101966 | None:intergenic | 35.0% | |
GAAAATAATCCTCTGCTTGA+AGG | - | chr5_2:6102205-6102224 | None:intergenic | 35.0% | |
!!! | TTTTTTTCCGCTTCAAGTTC+TGG | - | chr5_2:6102243-6102262 | None:intergenic | 35.0% |
ATTTAGCCTCACTAGCTATT+CGG | - | chr5_2:6102302-6102321 | None:intergenic | 35.0% | |
TGAGAAAGAGAATATCCAGA+TGG | + | chr5_2:6102332-6102351 | Msa0752450:CDS | 35.0% | |
GAGAAAGAGAATATCCAGAT+GGG | + | chr5_2:6102333-6102352 | Msa0752450:CDS | 35.0% | |
!! | AAGCTTTTCAAGATTCGAAG+TGG | - | chr5_2:6102370-6102389 | None:intergenic | 35.0% |
TTCGAATCTTGAAAAGCTTG+AGG | + | chr5_2:6102371-6102390 | Msa0752450:CDS | 35.0% | |
AGTCTCCTGCAATTTATCAA+GGG | - | chr5_2:6102412-6102431 | None:intergenic | 35.0% | |
TGAGGGAATGATCTTATTGA+AGG | + | chr5_2:6102431-6102450 | Msa0752450:CDS | 35.0% | |
! | TGAGTTGGAATTGGAATTGG+GGG | + | chr5_2:6099384-6099403 | Msa0752450:five_prime_UTR | 40.0% |
GGATCGAATCTGAATGAACA+TGG | + | chr5_2:6099405-6099424 | Msa0752450:exon | 40.0% | |
CGAATCTGAATGAACATGGA+AGG | + | chr5_2:6099409-6099428 | Msa0752450:exon | 40.0% | |
ATCTGAATGAACATGGAAGG+TGG | + | chr5_2:6099412-6099431 | Msa0752450:exon | 40.0% | |
GAGAAGATATTCTCGTCAAG+GGG | - | chr5_2:6099586-6099605 | None:intergenic | 40.0% | |
CAGAGAAGATATTCTCGTCA+AGG | - | chr5_2:6099588-6099607 | None:intergenic | 40.0% | |
!!! | AGATCATGGTCGTTTTGAAG+CGG | - | chr5_2:6099631-6099650 | None:intergenic | 40.0% |
! | GTTTTCTCCTTCTCTGATGT+TGG | - | chr5_2:6099681-6099700 | None:intergenic | 40.0% |
ATCAACATCAACATCAACGG+TGG | - | chr5_2:6099743-6099762 | None:intergenic | 40.0% | |
CGTTGATGTTGATGTTGATC+TGG | + | chr5_2:6099744-6099763 | Msa0752450:CDS | 40.0% | |
TGTTGATGTTGATCTGGATG+TGG | + | chr5_2:6099750-6099769 | Msa0752450:CDS | 40.0% | |
!!! | GTATCGTCTCCCTTATTTTC+TGG | - | chr5_2:6099984-6100003 | None:intergenic | 40.0% |
! | GATTTGTTTGTCCTTCTCAG+CGG | - | chr5_2:6100205-6100224 | None:intergenic | 40.0% |
ATGTATGTCTACTCTAGCCT+TGG | + | chr5_2:6100381-6100400 | Msa0752450:intron | 40.0% | |
! | TGTATGTCTACTCTAGCCTT+GGG | + | chr5_2:6100382-6100401 | Msa0752450:intron | 40.0% |
GCTTCTCATAATGCCATTAC+TGG | + | chr5_2:6100606-6100625 | Msa0752450:intron | 40.0% | |
!! | GTTTGCTGGCTTATTTCTCT+AGG | + | chr5_2:6100741-6100760 | Msa0752450:intron | 40.0% |
! | GTTTTCATCATCAGAAGCCT+TGG | + | chr5_2:6100890-6100909 | Msa0752450:CDS | 40.0% |
! | GAGTGTGCTAATGGATGAAT+TGG | + | chr5_2:6101040-6101059 | Msa0752450:CDS | 40.0% |
AGAGATTCAGTCAACCATTG+AGG | + | chr5_2:6101169-6101188 | Msa0752450:CDS | 40.0% | |
TCAACCATTGAGGTGAAGTA+TGG | + | chr5_2:6101179-6101198 | Msa0752450:CDS | 40.0% | |
TTTGCCATACTTCACCTCAA+TGG | - | chr5_2:6101186-6101205 | None:intergenic | 40.0% | |
CTTCTTCAGTGACAGAGTTT+CGG | - | chr5_2:6101243-6101262 | None:intergenic | 40.0% | |
TTCTTTCTTCCTGAACGAGA+AGG | - | chr5_2:6101280-6101299 | None:intergenic | 40.0% | |
TCTCGTTCAGGAAGAAAGAA+TGG | + | chr5_2:6101280-6101299 | Msa0752450:CDS | 40.0% | |
CTCGTTCAGGAAGAAAGAAT+GGG | + | chr5_2:6101281-6101300 | Msa0752450:CDS | 40.0% | |
TGTCATCTATACTGAAGTCC+GGG | + | chr5_2:6101387-6101406 | Msa0752450:CDS | 40.0% | |
ATCCAAGCTCAAGCTATGTT+AGG | + | chr5_2:6101611-6101630 | Msa0752450:intron | 40.0% | |
AAAACTCCCAACACAAGTCA+AGG | + | chr5_2:6101783-6101802 | Msa0752450:intron | 40.0% | |
!! | CTCATTCCTTGACTTGTGTT+GGG | - | chr5_2:6101792-6101811 | None:intergenic | 40.0% |
!! | TCTCATTCCTTGACTTGTGT+TGG | - | chr5_2:6101793-6101812 | None:intergenic | 40.0% |
!! | CTAGAGTCTGTGTTTTTGCA+TGG | - | chr5_2:6102107-6102126 | None:intergenic | 40.0% |
AAAAAGTTGCTACTGCTGCA+AGG | + | chr5_2:6102259-6102278 | Msa0752450:CDS | 40.0% | |
TACTGCTGCAAGGAATTTCA+AGG | + | chr5_2:6102269-6102288 | Msa0752450:CDS | 40.0% | |
TTTAGCCTCACTAGCTATTC+GGG | - | chr5_2:6102301-6102320 | None:intergenic | 40.0% | |
AGAGAATATCCAGATGGGAA+TGG | + | chr5_2:6102338-6102357 | Msa0752450:CDS | 40.0% | |
TATCCAGATGGGAATGGATA+CGG | + | chr5_2:6102344-6102363 | Msa0752450:CDS | 40.0% | |
CAGTCTCCTGCAATTTATCA+AGG | - | chr5_2:6102413-6102432 | None:intergenic | 40.0% | |
TGATAAATTGCAGGAGACTG+AGG | + | chr5_2:6102413-6102432 | Msa0752450:CDS | 40.0% | |
GATAAATTGCAGGAGACTGA+GGG | + | chr5_2:6102414-6102433 | Msa0752450:CDS | 40.0% | |
GAAGGAGAAAGAGTTAGCAA+TGG | + | chr5_2:6102449-6102468 | Msa0752450:CDS | 40.0% | |
TTCGACATCACCCATTTCTT+GGG | - | chr5_2:6102532-6102551 | None:intergenic | 40.0% | |
!! | TTTTTAGGAGCACACACATC+TGG | - | chr5_2:6102778-6102797 | None:intergenic | 40.0% |
TGAATGAACATGGAAGGTGG+CGG | + | chr5_2:6099415-6099434 | Msa0752450:exon | 45.0% | |
GGATTCACTGTTTGAAGGGA+TGG | + | chr5_2:6099444-6099463 | Msa0752450:CDS | 45.0% | |
GTTGTTCAATTTGGGCAGCA+GGG | - | chr5_2:6099480-6099499 | None:intergenic | 45.0% | |
TGCCCAAATTGAACAACCAG+CGG | + | chr5_2:6099483-6099502 | Msa0752450:CDS | 45.0% | |
! | CTCCGCTGGTTGTTCAATTT+GGG | - | chr5_2:6099488-6099507 | None:intergenic | 45.0% |
CAGAGAAGGAGAAAACGATC+TGG | + | chr5_2:6099685-6099704 | Msa0752450:CDS | 45.0% | |
! | AAACGATCTGGCTTGAGGAT+AGG | + | chr5_2:6099697-6099716 | Msa0752450:CDS | 45.0% |
! | TCTGGCTTGAGGATAGGTTA+TGG | + | chr5_2:6099703-6099722 | Msa0752450:CDS | 45.0% |
AGTACTAACGACGAGGGAAT+CGG | - | chr5_2:6099815-6099834 | None:intergenic | 45.0% | |
GGTAACAGTACTAACGACGA+GGG | - | chr5_2:6099821-6099840 | None:intergenic | 45.0% | |
AACAGCAGGAGCAACATCAA+TGG | - | chr5_2:6099896-6099915 | None:intergenic | 45.0% | |
TGCCATCAGGAGTAGAAGAA+AGG | + | chr5_2:6100062-6100081 | Msa0752450:CDS | 45.0% | |
!! | GTGTTGGCTAACCATTTCAG+CGG | - | chr5_2:6100175-6100194 | None:intergenic | 45.0% |
TACTGACCGTTGCATAATGG+TGG | - | chr5_2:6100338-6100357 | None:intergenic | 45.0% | |
TTCATCATCAGAAGCCTTGG+AGG | + | chr5_2:6100893-6100912 | Msa0752450:CDS | 45.0% | |
CGAAACTCTGTCACTGAAGA+AGG | + | chr5_2:6101241-6101260 | Msa0752450:CDS | 45.0% | |
!! | GGAATTTGCTAGGGTTTCTG+AGG | + | chr5_2:6101316-6101335 | Msa0752450:CDS | 45.0% |
! | ATTTGCTAGGGTTTCTGAGG+AGG | + | chr5_2:6101319-6101338 | Msa0752450:CDS | 45.0% |
! | GTTTCTGAGGAGGAAGCTAA+AGG | + | chr5_2:6101329-6101348 | Msa0752450:CDS | 45.0% |
AGGAGGAAGCTAAAGGATAC+AGG | + | chr5_2:6101336-6101355 | Msa0752450:CDS | 45.0% | |
GGAGGAAGCTAAAGGATACA+GGG | + | chr5_2:6101337-6101356 | Msa0752450:CDS | 45.0% | |
GTCATCTATACTGAAGTCCG+GGG | + | chr5_2:6101388-6101407 | Msa0752450:CDS | 45.0% | |
AAGTCTCAGTTTATCCTCCC+CGG | - | chr5_2:6101408-6101427 | None:intergenic | 45.0% | |
ATTAACCTGCAAGGAAGCTC+TGG | - | chr5_2:6101492-6101511 | None:intergenic | 45.0% | |
CACCTAACATAGCTTGAGCT+TGG | - | chr5_2:6101616-6101635 | None:intergenic | 45.0% | |
AGAAGAAATGCAACCATGGG+TGG | - | chr5_2:6101826-6101845 | None:intergenic | 45.0% | |
TGAAGGATGCTATGTCTTGC+TGG | - | chr5_2:6102188-6102207 | None:intergenic | 45.0% | |
ACATAGCATCCTTCAAGCAG+AGG | + | chr5_2:6102193-6102212 | Msa0752450:CDS | 45.0% | |
GAGAGTTCCAGAACTTGAAG+CGG | + | chr5_2:6102233-6102252 | Msa0752450:CDS | 45.0% | |
TGCTGCAAGGAATTTCAAGG+AGG | + | chr5_2:6102272-6102291 | Msa0752450:CDS | 45.0% | |
AGGCACCCTTGATAAATTGC+AGG | + | chr5_2:6102404-6102423 | Msa0752450:CDS | 45.0% | |
AAAAGCAGCTGCCCAAGAAA+TGG | + | chr5_2:6102518-6102537 | Msa0752450:CDS | 45.0% | |
AAAGCAGCTGCCCAAGAAAT+GGG | + | chr5_2:6102519-6102538 | Msa0752450:CDS | 45.0% | |
CTTCGACATCACCCATTTCT+TGG | - | chr5_2:6102533-6102552 | None:intergenic | 45.0% | |
!!! | TTAATTATTTGTTTTATTAT+AGG | - | chr5_2:6099331-6099350 | None:intergenic | 5.0% |
GGTTGTTCAATTTGGGCAGC+AGG | - | chr5_2:6099481-6099500 | None:intergenic | 50.0% | |
! | CCTCCGCTGGTTGTTCAATT+TGG | - | chr5_2:6099489-6099508 | None:intergenic | 50.0% |
CCAAATTGAACAACCAGCGG+AGG | + | chr5_2:6099486-6099505 | Msa0752450:CDS | 50.0% | |
AATTGAACAACCAGCGGAGG+AGG | + | chr5_2:6099489-6099508 | Msa0752450:CDS | 50.0% | |
CTTCGCACCAACATCAGAGA+AGG | + | chr5_2:6099671-6099690 | Msa0752450:CDS | 50.0% | |
! | GGAGAAAACGATCTGGCTTG+AGG | + | chr5_2:6099692-6099711 | Msa0752450:CDS | 50.0% |
AGGGAATCGGGAATATGAGG+AGG | - | chr5_2:6099802-6099821 | None:intergenic | 50.0% | |
ACGAGGGAATCGGGAATATG+AGG | - | chr5_2:6099805-6099824 | None:intergenic | 50.0% | |
GTACTAACGACGAGGGAATC+GGG | - | chr5_2:6099814-6099833 | None:intergenic | 50.0% | |
GGGTAACAGTACTAACGACG+AGG | - | chr5_2:6099822-6099841 | None:intergenic | 50.0% | |
! | AACATCAATGGAGGTGGTGG+TGG | - | chr5_2:6099884-6099903 | None:intergenic | 50.0% |
AGCAACATCAATGGAGGTGG+TGG | - | chr5_2:6099887-6099906 | None:intergenic | 50.0% | |
AGGAGCAACATCAATGGAGG+TGG | - | chr5_2:6099890-6099909 | None:intergenic | 50.0% | |
AGCAGGAGCAACATCAATGG+AGG | - | chr5_2:6099893-6099912 | None:intergenic | 50.0% | |
GTAGCGCTAACACTAACAGC+AGG | - | chr5_2:6099910-6099929 | None:intergenic | 50.0% | |
AGTTGAGCAGTTGACGAGCA+TGG | - | chr5_2:6100020-6100039 | None:intergenic | 50.0% | |
CTCTGCATCTTCTGCTCGAA+AGG | + | chr5_2:6100038-6100057 | Msa0752450:CDS | 50.0% | |
GGCCTTTCTTCTACTCCTGA+TGG | - | chr5_2:6100067-6100086 | None:intergenic | 50.0% | |
AGCAGCTATGTGAGAGTCGA+GGG | - | chr5_2:6100292-6100311 | None:intergenic | 50.0% | |
!! | TACTCTAGCCTTGGGTGTGA+GGG | + | chr5_2:6100390-6100409 | Msa0752450:intron | 50.0% |
GTGACACTTGGGGATGACAA+AGG | - | chr5_2:6100454-6100473 | None:intergenic | 50.0% | |
GTGTTGCACTGTGACACTTG+GGG | - | chr5_2:6100464-6100483 | None:intergenic | 50.0% | |
CGTGTTGCACTGTGACACTT+GGG | - | chr5_2:6100465-6100484 | None:intergenic | 50.0% | |
CCAAGTGTCACAGTGCAACA+CGG | + | chr5_2:6100463-6100482 | Msa0752450:intron | 50.0% | |
ATCTATACTGAAGTCCGGGG+AGG | + | chr5_2:6101391-6101410 | Msa0752450:CDS | 50.0% | |
TCCAGACCTGTGCTTAAGCA+CGG | + | chr5_2:6101978-6101997 | Msa0752450:intron | 50.0% | |
!! | CATGGAAGGTGGCGGAGATA+TGG | + | chr5_2:6099423-6099442 | Msa0752450:CDS | 55.0% |
TTGAAGCGGATCGACGACGA+GGG | - | chr5_2:6099617-6099636 | None:intergenic | 55.0% | |
! | TTTGAAGCGGATCGACGACG+AGG | - | chr5_2:6099618-6099637 | None:intergenic | 55.0% |
TCCTTCTCCTTCTCCTTCGC+CGG | + | chr5_2:6099774-6099793 | Msa0752450:CDS | 55.0% | |
TCGGGAATATGAGGAGGAGC+CGG | - | chr5_2:6099796-6099815 | None:intergenic | 55.0% | |
!! | ATCAATGGAGGTGGTGGTGG+TGG | - | chr5_2:6099881-6099900 | None:intergenic | 55.0% |
CTGCTCGAAAGGATGCCATC+AGG | + | chr5_2:6100049-6100068 | Msa0752450:CDS | 55.0% | |
! | TCTCAGCGGCAGAAAGGTGT+TGG | - | chr5_2:6100191-6100210 | None:intergenic | 55.0% |
ACACCTTTCTGCCGCTGAGA+AGG | + | chr5_2:6100191-6100210 | Msa0752450:CDS | 55.0% | |
TGTCCTTCTCAGCGGCAGAA+AGG | - | chr5_2:6100197-6100216 | None:intergenic | 55.0% | |
CAGCAGCTATGTGAGAGTCG+AGG | - | chr5_2:6100293-6100312 | None:intergenic | 55.0% | |
CGACTCTCACATAGCTGCTG+AGG | + | chr5_2:6100293-6100312 | Msa0752450:CDS | 55.0% | |
!! | CTACTCTAGCCTTGGGTGTG+AGG | + | chr5_2:6100389-6100408 | Msa0752450:intron | 55.0% |
AGTAGACACCCTCACACCCA+AGG | - | chr5_2:6100401-6100420 | None:intergenic | 55.0% | |
!! | GGTGTGAGGGTGTCTACTCT+AGG | + | chr5_2:6100403-6100422 | Msa0752450:intron | 55.0% |
CCGTGTTGCACTGTGACACT+TGG | - | chr5_2:6100466-6100485 | None:intergenic | 55.0% | |
GTGTCACAGTGCAACACGGT+AGG | + | chr5_2:6100467-6100486 | Msa0752450:intron | 55.0% | |
CCAGACCTGTGCTTAAGCAC+GGG | + | chr5_2:6101979-6101998 | Msa0752450:intron | 55.0% | |
GTTCACCCGTGCTTAAGCAC+AGG | - | chr5_2:6101987-6102006 | None:intergenic | 55.0% | |
TGGCCGTATCCATTCCCATC+TGG | - | chr5_2:6102350-6102369 | None:intergenic | 55.0% | |
TCTCCTGCTTGCAGAAGCTG+AGG | + | chr5_2:6102560-6102579 | Msa0752450:CDS | 55.0% | |
TGAACAACCAGCGGAGGAGG+AGG | + | chr5_2:6099492-6099511 | Msa0752450:CDS | 60.0% | |
TTCTTCTCCTCCTCCTCCGC+TGG | - | chr5_2:6099502-6099521 | None:intergenic | 60.0% | |
GAAGCTGATGCAGCTGCTGC+AGG | - | chr5_2:6099553-6099572 | None:intergenic | 60.0% | |
ATATGAGGAGGAGCCGGCGA+AGG | - | chr5_2:6099790-6099809 | None:intergenic | 60.0% | |
TGCTGCCAGAGCTTCCTTGC+AGG | + | chr5_2:6101484-6101503 | Msa0752450:CDS | 60.0% | |
CCCGTGCTTAAGCACAGGTC+TGG | - | chr5_2:6101982-6102001 | None:intergenic | 60.0% | |
GGCTGCCCGAATAGCTAGTG+AGG | + | chr5_2:6102293-6102312 | Msa0752450:CDS | 60.0% | |
CAGCCTCAGCTTCTGCAAGC+AGG | - | chr5_2:6102566-6102585 | None:intergenic | 60.0% | |
GCCGGCGAAGGAGAAGGAGA+AGG | - | chr5_2:6099778-6099797 | None:intergenic | 65.0% | |
GCGGATCGACGACGAGGGTG+AGG | - | chr5_2:6099612-6099631 | None:intergenic | 70.0% | |
GGAGGAGCCGGCGAAGGAGA+AGG | - | chr5_2:6099784-6099803 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_2 | gene | 6099310 | 6102956 | 6099310 | ID=Msa0752450;Name=Msa0752450 |
chr5_2 | mRNA | 6099310 | 6102956 | 6099310 | ID=Msa0752450-mRNA-1;Parent=Msa0752450;Name=Msa0752450-mRNA-1;_AED=0.01;_eAED=0.01;_QI=108|1|1|1|1|1|3|222|731 |
chr5_2 | exon | 6099310 | 6100350 | 6099310 | ID=Msa0752450-mRNA-1:exon:2559;Parent=Msa0752450-mRNA-1 |
chr5_2 | exon | 6100819 | 6101505 | 6100819 | ID=Msa0752450-mRNA-1:exon:2560;Parent=Msa0752450-mRNA-1 |
chr5_2 | exon | 6102159 | 6102956 | 6102159 | ID=Msa0752450-mRNA-1:exon:2561;Parent=Msa0752450-mRNA-1 |
chr5_2 | five_prime_UTR | 6099310 | 6099417 | 6099310 | ID=Msa0752450-mRNA-1:five_prime_utr;Parent=Msa0752450-mRNA-1 |
chr5_2 | CDS | 6099418 | 6100350 | 6099418 | ID=Msa0752450-mRNA-1:cds;Parent=Msa0752450-mRNA-1 |
chr5_2 | CDS | 6100819 | 6101505 | 6100819 | ID=Msa0752450-mRNA-1:cds;Parent=Msa0752450-mRNA-1 |
chr5_2 | CDS | 6102159 | 6102734 | 6102159 | ID=Msa0752450-mRNA-1:cds;Parent=Msa0752450-mRNA-1 |
chr5_2 | three_prime_UTR | 6102735 | 6102956 | 6102735 | ID=Msa0752450-mRNA-1:three_prime_utr;Parent=Msa0752450-mRNA-1 |
Gene Sequence |
Protein sequence |