AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0855870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0855870 MtrunA17_Chr5g0393391 92.525 602 13 4 545 1129 139 725 0.0 1028
Msa0855870 MtrunA17_Chr5g0393391 90.754 411 13 5 71 471 139 534 0.0 713
Msa0855870 MtrunA17_Chr5g0393391 82.500 40 4 1 1 37 3 42 2.00e-13 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0855870 AT5G25070.1 46.325 585 281 6 561 1124 159 731 1.01e-128 410
Msa0855870 AT5G25070.1 44.810 395 196 6 87 471 159 541 2.18e-78 273

Find 226 sgRNAs with CRISPR-Local

Find 467 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCCGCTGGTTGTTCAATT+TGG 0.072315 5_4:+50081448 None:intergenic
CCTCCGCTGGTTGTTCAATT+TGG 0.072315 5_4:+50085140 None:intergenic
CTTCACAAGCTTGTTCTAAT+TGG 0.219788 5_4:+50080797 None:intergenic
CTTCACAAGCTTGTTCTAAT+TGG 0.219788 5_4:+50084471 None:intergenic
AAGAAACGTTCCAGAAAATA+AGG 0.230695 5_4:-50080960 Msa0855870:CDS
AAGAAACGTTCCAGAAAATA+AGG 0.230695 5_4:-50084634 Msa0855870:CDS
CATAACACGTATCACAAAAT+TGG 0.238322 5_4:+50078113 None:intergenic
CGGAAGACATTTCAAATTTA+CGG 0.241495 5_4:-50078302 Msa0855870:CDS
CTTCGACATCACCCATTTCT+TGG 0.247970 5_4:+50078403 None:intergenic
CTCCGCTGGTTGTTCAATTT+GGG 0.269064 5_4:+50081449 None:intergenic
CTCCGCTGGTTGTTCAATTT+GGG 0.269064 5_4:+50085141 None:intergenic
TGCTGCCAGAGCTTCCTTGC+AGG 0.286964 5_4:-50079447 Msa0855870:intron
TGCTGCCAGAGCTTCCTTGC+AGG 0.286964 5_4:-50083121 Msa0855870:intron
ATTTAGCCTCACTAGCTATT+CGG 0.313696 5_4:+50078634 None:intergenic
ATATATATTGTGTACGATAT+TGG 0.337605 5_4:-50078075 Msa0855870:three_prime_UTR
CAATGATGTTGCTTTCTTCA+TGG 0.350218 5_4:+50080087 None:intergenic
CAATGATGTTGCTTTCTTCA+TGG 0.350218 5_4:+50083761 None:intergenic
CATGGAAGGTGGCGGAGATA+TGG 0.351142 5_4:-50081511 Msa0855870:intron
CATGGAAGGTGGCGGAGATA+TGG 0.351142 5_4:-50085203 Msa0855870:CDS
CTTCTTCAGTGACAGAGTTT+CGG 0.353431 5_4:+50079691 None:intergenic
CTTCTTCAGTGACAGAGTTT+CGG 0.353431 5_4:+50083365 None:intergenic
ATCATTGCATTCAAAAGAAA+TGG 0.355098 5_4:-50080071 Msa0855870:CDS
ATCATTGCATTCAAAAGAAA+TGG 0.355098 5_4:-50083745 Msa0855870:CDS
AAGCTTGAGGAAGAAATTAA+AGG 0.359557 5_4:-50078549 Msa0855870:CDS
GAAAATAATCCTCTGCTTGA+AGG 0.366556 5_4:+50078731 None:intergenic
ACGGAAAGATTTGATTTCAA+TGG 0.376880 5_4:-50078283 Msa0855870:CDS
TGAAGGATGCTATGTCTTGC+TGG 0.381178 5_4:+50078748 None:intergenic
CAAATCTAAAGCATGGATAA+AGG 0.392921 5_4:+50084352 None:intergenic
CAAATCTAAAGCATCGATAA+AGG 0.394085 5_4:+50080678 None:intergenic
GAGTGTGCTAATGGATGAAT+TGG 0.396769 5_4:-50083565 Msa0855870:CDS
AAAAGCAGCTGCCCAAGAAA+TGG 0.401381 5_4:-50078415 Msa0855870:CDS
GGTTGTTCAATTTGGGCAGC+AGG 0.401748 5_4:+50081456 None:intergenic
GGTTGTTCAATTTGGGCAGC+AGG 0.401748 5_4:+50085148 None:intergenic
AACAATGAGGAAAAGCTCTC+TGG 0.403357 5_4:-50079500 Msa0855870:CDS
AACAATGAGGAAAAGCTCTC+TGG 0.403357 5_4:-50083174 Msa0855870:CDS
TTCGACATCACCCATTTCTT+GGG 0.407089 5_4:+50078404 None:intergenic
TAACATTGAGCTTTCAATAG+AGG 0.407824 5_4:-50079951 Msa0855870:CDS
TAACATTGAGCTTTCAATAG+AGG 0.407824 5_4:-50083625 Msa0855870:CDS
AGTACTAACGACGAGGGAAT+CGG 0.409750 5_4:+50081119 None:intergenic
AGTACTAACGACGAGGGAAT+CGG 0.409750 5_4:+50084793 None:intergenic
TGTTGATGTTGATGTTGATC+TGG 0.411221 5_4:-50084861 Msa0855870:CDS
AAGATAAATAATGTCGTCTC+TGG 0.411416 5_4:-50079791 Msa0855870:CDS
AAGATAAATAATGTCGTCTC+TGG 0.411416 5_4:-50083465 Msa0855870:CDS
TTTAGCCTCACTAGCTATTC+GGG 0.411756 5_4:+50078635 None:intergenic
GAAGCTGATGCAGCTGCTGC+AGG 0.415904 5_4:+50081387 None:intergenic
TCAACCATTGAGGTGAAGTA+TGG 0.417837 5_4:-50079752 Msa0855870:CDS
TCAACCATTGAGGTGAAGTA+TGG 0.417837 5_4:-50083426 Msa0855870:CDS
AGGCACCCTTGATAAATTGC+AGG 0.418273 5_4:-50078529 Msa0855870:CDS
AAAGAATGGGAGCAAAACTT+AGG 0.430881 5_4:-50079637 Msa0855870:CDS
AAAGAATGGGAGCAAAACTT+AGG 0.430881 5_4:-50083311 Msa0855870:CDS
TACTATCACTAGATGGTTGT+TGG 0.432236 5_4:+50081091 None:intergenic
TACTATCACTAGATGGTTGT+TGG 0.432236 5_4:+50084765 None:intergenic
AGGAGGAAGCTAAAGGATAC+AGG 0.435555 5_4:-50079595 Msa0855870:CDS
AGGAGGAAGCTAAAGGATAC+AGG 0.435555 5_4:-50083269 Msa0855870:CDS
TAAAAGAAAGAGTGTGCTAA+TGG 0.437544 5_4:-50083574 Msa0855870:CDS
ATCAGCTTGTCTCAATGATT+CGG 0.437966 5_4:+50080702 None:intergenic
ATCAGCTTGTCTCAATGATT+CGG 0.437966 5_4:+50084376 None:intergenic
CAGTCTCCTGCAATTTATCA+AGG 0.444642 5_4:+50078523 None:intergenic
GTACTAACGACGAGGGAATC+GGG 0.448073 5_4:+50081120 None:intergenic
GTACTAACGACGAGGGAATC+GGG 0.448073 5_4:+50084794 None:intergenic
CAAAACTTAGGGAATTTGCT+AGG 0.448557 5_4:-50079625 Msa0855870:CDS
CAAAACTTAGGGAATTTGCT+AGG 0.448557 5_4:-50083299 Msa0855870:CDS
ATTAACCTGCAAGGAAGCTC+TGG 0.449548 5_4:+50079442 None:intergenic
ATTAACCTGCAAGGAAGCTC+TGG 0.449548 5_4:+50083116 None:intergenic
GGATTCACTGTTTGAAGGGA+TGG 0.449967 5_4:-50081490 Msa0855870:CDS
GGATTCACTGTTTGAAGGGA+TGG 0.449967 5_4:-50085182 Msa0855870:CDS
CTCTGCATCTTCTGCTCGAA+AGG 0.452472 5_4:-50080893 Msa0855870:CDS
CTCTGCATCTTCTGCTCGAA+AGG 0.452472 5_4:-50084567 Msa0855870:CDS
TGATTCTTCTCCTCCTCCGC+TGG 0.452831 5_4:+50081435 None:intergenic
TGATTCTTCTCCTCCTCCGC+TGG 0.452831 5_4:+50085127 None:intergenic
GCTGATGCAGCTGCTGCAGG+AGG 0.453854 5_4:+50081390 None:intergenic
TCTCGTTCAGGAAGAAAGAA+TGG 0.469047 5_4:-50079651 Msa0855870:intron
TCTCGTTCAGGAAGAAAGAA+TGG 0.469047 5_4:-50083325 Msa0855870:intron
TCGATCAACATACAATTTCA+AGG 0.470108 5_4:-50078325 Msa0855870:CDS
CGAAACTCTGTCACTGAAGA+AGG 0.470630 5_4:-50079690 Msa0855870:CDS
CGAAACTCTGTCACTGAAGA+AGG 0.470630 5_4:-50083364 Msa0855870:CDS
TCTTGCTTCTCTTAAATACA+TGG 0.470663 5_4:-50080830 Msa0855870:CDS
TCTTGCTTCTCTTAAATACA+TGG 0.470663 5_4:-50084504 Msa0855870:CDS
CGGCTGTATCCATTCCCATC+TGG 0.471467 5_4:+50078586 None:intergenic
ATGTCATCTATACTGAAGTC+CGG 0.471801 5_4:-50079545 Msa0855870:CDS
ATGTCATCTATACTGAAGTC+CGG 0.471801 5_4:-50083219 Msa0855870:CDS
TCCTTCTCCTTCTCCTTCGC+CGG 0.472966 5_4:-50081157 Msa0855870:CDS
TCCTTCTCCTTCTCCTTCGC+CGG 0.472966 5_4:-50084831 Msa0855870:CDS
CACCACCGTTGATGTTGATC+TGG 0.473513 5_4:-50081187 Msa0855870:CDS
TACTGCTGCAAGGAATTTCA+AGG 0.474319 5_4:-50078664 Msa0855870:CDS
ACGAGGGAATCGGGAATATG+AGG 0.480087 5_4:+50081129 None:intergenic
TTTGCCATACTTCACCTCAA+TGG 0.480113 5_4:+50079748 None:intergenic
TTTGCCATACTTCACCTCAA+TGG 0.480113 5_4:+50083422 None:intergenic
ATCAATGGAGGTGGTGGTGG+TGG 0.484371 5_4:+50081053 None:intergenic
ATCAATGGAGGTGGTGGTGG+TGG 0.484371 5_4:+50084727 None:intergenic
TCACTAGTACTATCACTAGA+TGG 0.489482 5_4:+50081084 None:intergenic
TCACTAGTACTATCACTAGA+TGG 0.489482 5_4:+50084758 None:intergenic
AAAGCAGCTGCCCAAGAAAT+GGG 0.490454 5_4:-50078414 Msa0855870:CDS
CAGCCTCAGCTTCTGCAAGC+AGG 0.491844 5_4:+50078370 None:intergenic
AGAAGTGAAATTGTTTCAGC+AGG 0.495187 5_4:-50079477 Msa0855870:CDS
AGAAGTGAAATTGTTTCAGC+AGG 0.495187 5_4:-50083151 Msa0855870:CDS
AACATCAATGGAGGTGGTGG+TGG 0.495643 5_4:+50081050 None:intergenic
AACATCAATGGAGGTGGTGG+TGG 0.495643 5_4:+50084724 None:intergenic
CTGCTCGAAAGGATGCCATC+AGG 0.495792 5_4:-50080882 Msa0855870:CDS
CTGCTCGAAAGGATGCCATC+AGG 0.495792 5_4:-50084556 Msa0855870:CDS
ATATACTGACCGTTGCATAA+TGG 0.498069 5_4:+50080593 None:intergenic
ATATACTGACCGTTGCATAA+TGG 0.498069 5_4:+50084267 None:intergenic
AGCACCTCAAATATTAAAAG+TGG 0.503960 5_4:+50078043 None:intergenic
TGAGGGAATGATCTTATTGA+AGG 0.505500 5_4:-50078502 Msa0855870:CDS
AATTGAACAACCAGCGGAGG+AGG 0.507192 5_4:-50081445 Msa0855870:CDS
AATTGAACAACCAGCGGAGG+AGG 0.507192 5_4:-50085137 Msa0855870:CDS
ACTATCACTAGATGGTTGTT+GGG 0.511746 5_4:+50081092 None:intergenic
ACTATCACTAGATGGTTGTT+GGG 0.511746 5_4:+50084766 None:intergenic
GGCCTTTCTTCTACTCCTGA+TGG 0.515837 5_4:+50080867 None:intergenic
GGCCTTTCTTCTACTCCTGA+TGG 0.515837 5_4:+50084541 None:intergenic
TGTCATCTATACTGAAGTCC+GGG 0.516629 5_4:-50079544 Msa0855870:CDS
TGTCATCTATACTGAAGTCC+GGG 0.516629 5_4:-50083218 Msa0855870:CDS
GATATGGATTCACTGTTTGA+AGG 0.517172 5_4:-50081495 Msa0855870:CDS
GATATGGATTCACTGTTTGA+AGG 0.517172 5_4:-50085187 Msa0855870:CDS
AGAAACGTTCCAGAAAATAA+GGG 0.517394 5_4:-50080959 Msa0855870:CDS
AGAAACGTTCCAGAAAATAA+GGG 0.517394 5_4:-50084633 Msa0855870:CDS
TTCATCATCAGAAGCCTTGG+AGG 0.517836 5_4:-50080038 Msa0855870:CDS
TTCATCATCAGAAGCCTTGG+AGG 0.517836 5_4:-50083712 Msa0855870:CDS
AAGAATGGGAGCAAAACTTA+GGG 0.522281 5_4:-50079636 Msa0855870:CDS
AAGAATGGGAGCAAAACTTA+GGG 0.522281 5_4:-50083310 Msa0855870:CDS
GGAGGAGCCGGCGAAGGAGA+AGG 0.524720 5_4:+50081150 None:intergenic
AGAGGAGCCGGCGAAGGAGA+AGG 0.524720 5_4:+50084824 None:intergenic
TGCCATCAGGAGTAGAAGAA+AGG 0.526891 5_4:-50080869 Msa0855870:CDS
TGCCATCAGGAGTAGAAGAA+AGG 0.526891 5_4:-50084543 Msa0855870:CDS
TGTTGATGTTGATCTGGATG+TGG 0.531937 5_4:-50084855 Msa0855870:CDS
GTTGTTCAATTTGGGCAGCA+GGG 0.533020 5_4:+50081457 None:intergenic
GTTGTTCAATTTGGGCAGCA+GGG 0.533020 5_4:+50085149 None:intergenic
ACACCTTTCTGCCGCTGAGA+AGG 0.535473 5_4:-50080740 Msa0855870:CDS
ACACCTTTCTGCCGCTGAGA+AGG 0.535473 5_4:-50084414 Msa0855870:CDS
AGCAACATCAATGGAGGTGG+TGG 0.537145 5_4:+50081047 None:intergenic
AGCAACATCAATGGAGGTGG+TGG 0.537145 5_4:+50084721 None:intergenic
GCAATTTCAAATCTAAAGCA+TGG 0.538097 5_4:+50084345 None:intergenic
AAAACTTAGGGAATTTGCTA+GGG 0.538995 5_4:-50079624 Msa0855870:CDS
AAAACTTAGGGAATTTGCTA+GGG 0.538995 5_4:-50083298 Msa0855870:CDS
GGAATTTGCTAGGGTTTCTG+AGG 0.541022 5_4:-50079615 Msa0855870:CDS
GGAATTTGCTAGGGTTTCTG+AGG 0.541022 5_4:-50083289 Msa0855870:CDS
TGTCCTTCTCAGCGGCAGAA+AGG 0.542611 5_4:+50080737 None:intergenic
TGTCCTTCTCAGCGGCAGAA+AGG 0.542611 5_4:+50084411 None:intergenic
CTCGTTCAGGAAGAAAGAAT+GGG 0.543231 5_4:-50079650 Msa0855870:intron
CTCGTTCAGGAAGAAAGAAT+GGG 0.543231 5_4:-50083324 Msa0855870:intron
AAGTCTCAGTTTATCCTCCC+CGG 0.543354 5_4:+50079526 None:intergenic
AAGTCTCAGTTTATCCTCCC+CGG 0.543354 5_4:+50083200 None:intergenic
AGAGAATATCCAGATGGGAA+TGG 0.545530 5_4:-50078595 Msa0855870:CDS
ATATGGATTCACTGTTTGAA+GGG 0.547035 5_4:-50081494 Msa0855870:CDS
ATATGGATTCACTGTTTGAA+GGG 0.547035 5_4:-50085186 Msa0855870:CDS
AACAGCAGGAGCAACATCAA+TGG 0.549336 5_4:+50081038 None:intergenic
AACAGCAGGAGCAACATCAA+TGG 0.549336 5_4:+50084712 None:intergenic
TTCGAATCTTGAAAAGCTTG+AGG 0.550792 5_4:-50078562 Msa0855870:CDS
TCGGGAATATGAGGAGGAGC+CGG 0.553209 5_4:+50081138 None:intergenic
AGAGATTCAGTCAACCATTG+AGG 0.558406 5_4:-50079762 Msa0855870:CDS
AGAGATTCAGTCAACCATTG+AGG 0.558406 5_4:-50083436 Msa0855870:CDS
CGTTGATGTTGATCTGGATG+TGG 0.564514 5_4:-50081181 Msa0855870:CDS
GTTTCTGAGGAGGAAGCTAA+AGG 0.564591 5_4:-50079602 Msa0855870:CDS
GTTTCTGAGGAGGAAGCTAA+AGG 0.564591 5_4:-50083276 Msa0855870:CDS
TCTCAGCGGCAGAAAGGTGT+TGG 0.569864 5_4:+50080743 None:intergenic
TCTCAGCGGCAGAAAGGTGT+TGG 0.569864 5_4:+50084417 None:intergenic
TGATAAATTGCAGGAGACTG+AGG 0.570191 5_4:-50078520 Msa0855870:CDS
TCGGGAATATGAAGAGGAGC+CGG 0.570672 5_4:+50084812 None:intergenic
ATTTGCTAGGGTTTCTGAGG+AGG 0.580411 5_4:-50079612 Msa0855870:CDS
ATTTGCTAGGGTTTCTGAGG+AGG 0.580411 5_4:-50083286 Msa0855870:CDS
AGCAGCTATGTGAGAGTCGA+GGG 0.583434 5_4:+50080642 None:intergenic
AGCAGCTATGTGAGAGTCGA+GGG 0.583434 5_4:+50084316 None:intergenic
GCCGGCGAAGGAGAAGGAGA+AGG 0.583638 5_4:+50081156 None:intergenic
GCCGGCGAAGGAGAAGGAGA+AGG 0.583638 5_4:+50084830 None:intergenic
ATTCAAAAGAAATGGAACAA+TGG 0.589269 5_4:-50080063 Msa0855870:CDS
ATTCAAAAGAAATGGAACAA+TGG 0.589269 5_4:-50083737 Msa0855870:CDS
TGAGAAAGAGAATATCCAGA+TGG 0.592249 5_4:-50078601 Msa0855870:CDS
CGAATCTGAATGAACATGGA+AGG 0.596912 5_4:-50085217 None:intergenic
GAGAGTTCCAGAACTTGAAG+CGG 0.597506 5_4:-50078700 Msa0855870:CDS
ATATGAGGAGGAGCCGGCGA+AGG 0.598171 5_4:+50081144 None:intergenic
ATATGAAGAGGAGCCGGCGA+AGG 0.598171 5_4:+50084818 None:intergenic
CGACTCTCACATAGCTGCTG+AGG 0.598674 5_4:-50080638 Msa0855870:CDS
CGACTCTCACATAGCTGCTG+AGG 0.598674 5_4:-50084312 Msa0855870:CDS
AGTTGAGCAGTTGACGAGCA+TGG 0.600096 5_4:+50080914 None:intergenic
AGTTGAGCAGTTGACGAGCA+TGG 0.600096 5_4:+50084588 None:intergenic
TACTGACCGTTGCATAATGG+TGG 0.601422 5_4:+50080596 None:intergenic
TACTGACCGTTGCATAATGG+TGG 0.601422 5_4:+50084270 None:intergenic
GAGAAAGAGAATATCCAGAT+GGG 0.606890 5_4:-50078600 Msa0855870:CDS
AGGAGCAACATCAATGGAGG+TGG 0.607030 5_4:+50081044 None:intergenic
AGGAGCAACATCAATGGAGG+TGG 0.607030 5_4:+50084718 None:intergenic
GATAAATTGCAGGAGACTGA+GGG 0.609466 5_4:-50078519 Msa0855870:CDS
AGCAAGATTAGAATTCTGAA+AGG 0.612744 5_4:+50080846 None:intergenic
AGCAAGATTAGAATTCTGAA+AGG 0.612744 5_4:+50084520 None:intergenic
AGTCTCCTGCAATTTATCAA+GGG 0.623518 5_4:+50078524 None:intergenic
AACATCAACATCAACATCAA+CGG 0.624113 5_4:+50084874 None:intergenic
TCTCCTGCTTGCAGAAGCTG+AGG 0.624719 5_4:-50078373 Msa0855870:CDS
AGGGAATCGGGAATATGAAG+AGG 0.631267 5_4:+50084806 None:intergenic
GTAGCGCTAACACTAACAGC+AGG 0.633509 5_4:+50081024 None:intergenic
GTAGCGCTAACACTAACAGC+AGG 0.633509 5_4:+50084698 None:intergenic
ACATAGCATCCTTCAAGCAG+AGG 0.634177 5_4:-50078740 Msa0855870:CDS
CAGCAGCTATGTGAGAGTCG+AGG 0.634230 5_4:+50080641 None:intergenic
CAGCAGCTATGTGAGAGTCG+AGG 0.634230 5_4:+50084315 None:intergenic
AGTACAAGAATTAACCTGCA+AGG 0.635054 5_4:+50079433 None:intergenic
AGTACAAGAATTAACCTGCA+AGG 0.635054 5_4:+50083107 None:intergenic
ATCTGAATGAACATGGAAGG+TGG 0.639736 5_4:-50085214 None:intergenic
CACATCCAGATCAACATCAA+CGG 0.641777 5_4:+50081182 None:intergenic
GTGTTGGCTAACCATTTCAG+CGG 0.645187 5_4:+50080759 None:intergenic
GTGTTGGCTAACCATTTCAG+CGG 0.645187 5_4:+50084433 None:intergenic
GAAGGAGAAAGAGTTAGCAA+TGG 0.653490 5_4:-50078484 Msa0855870:CDS
AGGGAATCGGGAATATGAGG+AGG 0.659914 5_4:+50081132 None:intergenic
TGAATGAACATGGAAGGTGG+CGG 0.662329 5_4:-50085211 None:intergenic
TGCCCAAATTGAACAACCAG+CGG 0.662559 5_4:-50081451 Msa0855870:CDS
TGCCCAAATTGAACAACCAG+CGG 0.662559 5_4:-50085143 Msa0855870:CDS
GGAGGAAGCTAAAGGATACA+GGG 0.664518 5_4:-50079594 Msa0855870:CDS
GGAGGAAGCTAAAGGATACA+GGG 0.664518 5_4:-50083268 Msa0855870:CDS
AGCAGGAGCAACATCAATGG+AGG 0.665368 5_4:+50081041 None:intergenic
AGCAGGAGCAACATCAATGG+AGG 0.665368 5_4:+50084715 None:intergenic
GGCTGCCCGAATAGCTAGTG+AGG 0.669487 5_4:-50078640 Msa0855870:CDS
ACTGAGACTTACAAACAATG+AGG 0.670889 5_4:-50079513 Msa0855870:CDS
ACTGAGACTTACAAACAATG+AGG 0.670889 5_4:-50083187 Msa0855870:CDS
CCAAATTGAACAACCAGCGG+AGG 0.674887 5_4:-50081448 Msa0855870:CDS
CCAAATTGAACAACCAGCGG+AGG 0.674887 5_4:-50085140 Msa0855870:CDS
GATTTGTTTGTCCTTCTCAG+CGG 0.680058 5_4:+50080729 None:intergenic
GATTTGTTTGTCCTTCTCAG+CGG 0.680058 5_4:+50084403 None:intergenic
GTCATCTATACTGAAGTCCG+GGG 0.682251 5_4:-50079543 Msa0855870:CDS
GTCATCTATACTGAAGTCCG+GGG 0.682251 5_4:-50083217 Msa0855870:CDS
ATTACTCCACCATTATGCAA+CGG 0.686615 5_4:-50080602 Msa0855870:intron
ATTACTCCACCATTATGCAA+CGG 0.686615 5_4:-50084276 Msa0855870:CDS
ATCAACATCAACATCAACGG+TGG 0.708121 5_4:+50084877 None:intergenic
GGGTAACAGTACTAACGACG+AGG 0.718979 5_4:+50081112 None:intergenic
GGGTAACAGTACTAACGACG+AGG 0.718979 5_4:+50084786 None:intergenic
ATCCAGATCAACATCAACGG+TGG 0.723332 5_4:+50081185 None:intergenic
GGTAACAGTACTAACGACGA+GGG 0.735047 5_4:+50081113 None:intergenic
GGTAACAGTACTAACGACGA+GGG 0.735047 5_4:+50084787 None:intergenic
ATCAACATACAATTTCAAGG+CGG 0.735712 5_4:-50078322 Msa0855870:CDS
TGCTGCAAGGAATTTCAAGG+AGG 0.736309 5_4:-50078661 Msa0855870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTATAGTAATAAATAAAAAT+AGG + chr5_4:50080448-50080467 None:intergenic 10.0%
!! CTATAGTAATAAATAAAAAT+AGG + chr5_4:50080448-50080467 None:intergenic 10.0%
!! AGGAATTTATTTATATCATT+GGG + chr5_4:50079166-50079185 None:intergenic 15.0%
!! AAGGAATTTATTTATATCAT+TGG + chr5_4:50079167-50079186 None:intergenic 15.0%
!!! ACTAATATCATTTTTAAGTT+GGG + chr5_4:50081523-50081542 None:intergenic 15.0%
!!! TACTAATATCATTTTTAAGT+TGG + chr5_4:50081524-50081543 None:intergenic 15.0%
!! AGGAATTTATTTATATCATT+GGG + chr5_4:50079166-50079185 None:intergenic 15.0%
!! AAGGAATTTATTTATATCAT+TGG + chr5_4:50079167-50079186 None:intergenic 15.0%
!!! ACTAATATCATTTTTAAGTT+GGG + chr5_4:50081523-50081542 None:intergenic 15.0%
!!! TACTAATATCATTTTTAAGT+TGG + chr5_4:50081524-50081543 None:intergenic 15.0%
!!! AATCTTATTTAATTGCTCTA+TGG - chr5_4:50079259-50079278 Msa0855870:intron 20.0%
!!! ATCTTATTTAATTGCTCTAT+GGG - chr5_4:50079260-50079279 Msa0855870:intron 20.0%
!! TACAAAATTATACAAAAGGA+TGG + chr5_4:50079314-50079333 None:intergenic 20.0%
!! CAGATACAAAATTATACAAA+AGG + chr5_4:50079318-50079337 None:intergenic 20.0%
!! TATTGTTAAAAACGTCTTAA+TGG - chr5_4:50080614-50080633 Msa0855870:CDS 20.0%
!!! TTTTATCAAGAATTGATACA+AGG + chr5_4:50081273-50081292 None:intergenic 20.0%
!! AATTCTTGATAAAAAGCAAT+TGG - chr5_4:50081279-50081298 Msa0855870:intron 20.0%
!!! TTATCCAAACAAAATTTTAG+TGG - chr5_4:50081335-50081354 Msa0855870:intron 20.0%
!!! AAATCCACTAAAATTTTGTT+TGG + chr5_4:50081342-50081361 None:intergenic 20.0%
!! ATATATATTGTGTACGATAT+TGG - chr5_4:50081454-50081473 Msa0855870:CDS 20.0%
!!! TTTACCACTTTTAATATTTG+AGG - chr5_4:50081482-50081501 Msa0855870:CDS 20.0%
!!! TAATATCATTTTTAAGTTGG+GGG + chr5_4:50081521-50081540 None:intergenic 20.0%
!!! CTAATATCATTTTTAAGTTG+GGG + chr5_4:50081522-50081541 None:intergenic 20.0%
!! NNNNNNNNNNTTGGAATTGG+GGG - chr5_4:50081651-50081670 Msa0855870:intron 20.0%
!!! AATCTTATTTAATTGCTCTA+TGG - chr5_4:50079259-50079278 Msa0855870:intron 20.0%
!!! ATCTTATTTAATTGCTCTAT+GGG - chr5_4:50079260-50079279 Msa0855870:intron 20.0%
!! TATTGTTAAAAACGTCTTAA+TGG - chr5_4:50080614-50080633 Msa0855870:CDS 20.0%
!!! TTTTATCAAGAATTGATACA+AGG + chr5_4:50081273-50081292 None:intergenic 20.0%
!! AATTCTTGATAAAAAGCAAT+TGG - chr5_4:50081279-50081298 Msa0855870:intron 20.0%
!!! TTATCCAAACAAAATTTTAG+TGG - chr5_4:50081335-50081354 Msa0855870:intron 20.0%
!!! AAATCCACTAAAATTTTGTT+TGG + chr5_4:50081342-50081361 None:intergenic 20.0%
!! ATATATATTGTGTACGATAT+TGG - chr5_4:50081454-50081473 Msa0855870:CDS 20.0%
!!! TTTACCACTTTTAATATTTG+AGG - chr5_4:50081482-50081501 Msa0855870:CDS 20.0%
!!! TAATATCATTTTTAAGTTGG+GGG + chr5_4:50081521-50081540 None:intergenic 20.0%
!!! CTAATATCATTTTTAAGTTG+GGG + chr5_4:50081522-50081541 None:intergenic 20.0%
!!! TTTTAGTTCCTCTAAAAGAA+TGG - chr5_4:50079129-50079148 Msa0855870:intron 25.0%
!! TCTTATTTAATTGCTCTATG+GGG - chr5_4:50079261-50079280 Msa0855870:intron 25.0%
!! ATAATTTTGTATCTGTTTGC+TGG - chr5_4:50079323-50079342 Msa0855870:intron 25.0%
! ATCATTGCATTCAAAAGAAA+TGG - chr5_4:50079456-50079475 Msa0855870:CDS 25.0%
! ATTCAAAAGAAATGGAACAA+TGG - chr5_4:50079464-50079483 Msa0855870:CDS 25.0%
!!! TGTACTTATTTTTATGTGCT+TGG - chr5_4:50080111-50080130 Msa0855870:CDS 25.0%
! GTCAATATCTCTAGATATAA+TGG - chr5_4:50080349-50080368 Msa0855870:intron 25.0%
! ATAAAACAATGACCAAAAAG+TGG - chr5_4:50080492-50080511 Msa0855870:intron 25.0%
!!! AATGTCATCACATTGTTTTT+AGG - chr5_4:50080733-50080752 Msa0855870:CDS 25.0%
!! TTAGTAACTTTGTTTAACCA+TGG - chr5_4:50081538-50081557 Msa0855870:intron 25.0%
!!! TTTTAGTTCCTCTAAAAGAA+TGG - chr5_4:50079129-50079148 Msa0855870:intron 25.0%
!! TCTTATTTAATTGCTCTATG+GGG - chr5_4:50079261-50079280 Msa0855870:intron 25.0%
! ATCATTGCATTCAAAAGAAA+TGG - chr5_4:50079456-50079475 Msa0855870:CDS 25.0%
! ATTCAAAAGAAATGGAACAA+TGG - chr5_4:50079464-50079483 Msa0855870:CDS 25.0%
!!! TGTACTTATTTTTATGTGCT+TGG - chr5_4:50080111-50080130 Msa0855870:CDS 25.0%
! GTCAATATCTCTAGATATAA+TGG - chr5_4:50080349-50080368 Msa0855870:intron 25.0%
! ATAAAACAATGACCAAAAAG+TGG - chr5_4:50080492-50080511 Msa0855870:intron 25.0%
!!! AATGTCATCACATTGTTTTT+AGG - chr5_4:50080733-50080752 Msa0855870:CDS 25.0%
ATATGGATTCACTGTTTGAA+GGG - chr5_4:50078015-50078034 Msa0855870:three_prime_UTR 30.0%
ATTGAGATTGAAGAAGATCA+TGG + chr5_4:50078217-50078236 None:intergenic 30.0%
AACATCAACATCAACATCAA+CGG + chr5_4:50078330-50078349 None:intergenic 30.0%
AAGAAACGTTCCAGAAAATA+AGG - chr5_4:50078567-50078586 Msa0855870:CDS 30.0%
AGAAACGTTCCAGAAAATAA+GGG - chr5_4:50078568-50078587 Msa0855870:CDS 30.0%
AGCAAGATTAGAATTCTGAA+AGG + chr5_4:50078684-50078703 None:intergenic 30.0%
TCTTGCTTCTCTTAAATACA+TGG - chr5_4:50078697-50078716 Msa0855870:CDS 30.0%
! CAAATCTAAAGCATGGATAA+AGG + chr5_4:50078852-50078871 None:intergenic 30.0%
! GCAATTTCAAATCTAAAGCA+TGG + chr5_4:50078859-50078878 None:intergenic 30.0%
! TGACAAAGGCATATACTAAT+TGG + chr5_4:50079036-50079055 None:intergenic 30.0%
AGAGGAACTAAAATTACACT+TGG + chr5_4:50079122-50079141 None:intergenic 30.0%
AAGCATAGCTAAAATGCATA+AGG + chr5_4:50079186-50079205 None:intergenic 30.0%
! TAGGCTCTTTATTTAAGTCA+TGG - chr5_4:50079356-50079375 Msa0855870:intron 30.0%
! ATTTACAGCATTCTAGAGAA+GGG + chr5_4:50079407-50079426 None:intergenic 30.0%
! TATTTACAGCATTCTAGAGA+AGG + chr5_4:50079408-50079427 None:intergenic 30.0%
TAACATTGAGCTTTCAATAG+AGG - chr5_4:50079576-50079595 Msa0855870:CDS 30.0%
! TAAAAGAAAGAGTGTGCTAA+TGG - chr5_4:50079627-50079646 Msa0855870:CDS 30.0%
AAGATAAATAATGTCGTCTC+TGG - chr5_4:50079736-50079755 Msa0855870:CDS 30.0%
!! AAAACTTAGGGAATTTGCTA+GGG - chr5_4:50079903-50079922 Msa0855870:intron 30.0%
CAAATTAAAGGTAGGAACTA+GGG + chr5_4:50080180-50080199 None:intergenic 30.0%
TCAAATTAAAGGTAGGAACT+AGG + chr5_4:50080181-50080200 None:intergenic 30.0%
AAGCTATGTTAGGTGAATAT+AGG - chr5_4:50080217-50080236 Msa0855870:intron 30.0%
! TTCCTCTGAAAGTAATAGTT+TGG - chr5_4:50080327-50080346 Msa0855870:intron 30.0%
AATAGAAGAAATGCAACCAT+GGG + chr5_4:50080425-50080444 None:intergenic 30.0%
TTGCATGGAAAAAAACAAAC+AGG + chr5_4:50080688-50080707 None:intergenic 30.0%
AAGCTTGAGGAAGAAATTAA+AGG - chr5_4:50080980-50080999 Msa0855870:CDS 30.0%
TCGATCAACATACAATTTCA+AGG - chr5_4:50081204-50081223 Msa0855870:CDS 30.0%
ATCAACATACAATTTCAAGG+CGG - chr5_4:50081207-50081226 Msa0855870:CDS 30.0%
CGGAAGACATTTCAAATTTA+CGG - chr5_4:50081227-50081246 Msa0855870:intron 30.0%
! ACGGAAAGATTTGATTTCAA+TGG - chr5_4:50081246-50081265 Msa0855870:intron 30.0%
! TGCTGCATTCAGTAATTTTT+AGG + chr5_4:50081389-50081408 None:intergenic 30.0%
CATAACACGTATCACAAAAT+TGG + chr5_4:50081419-50081438 None:intergenic 30.0%
AGCACCTCAAATATTAAAAG+TGG + chr5_4:50081489-50081508 None:intergenic 30.0%
ATATGGATTCACTGTTTGAA+GGG - chr5_4:50078015-50078034 Msa0855870:three_prime_UTR 30.0%
ATTGAGATTGAAGAAGATCA+TGG + chr5_4:50078217-50078236 None:intergenic 30.0%
AAGAAACGTTCCAGAAAATA+AGG - chr5_4:50078567-50078586 Msa0855870:CDS 30.0%
AGAAACGTTCCAGAAAATAA+GGG - chr5_4:50078568-50078587 Msa0855870:CDS 30.0%
AGCAAGATTAGAATTCTGAA+AGG + chr5_4:50078684-50078703 None:intergenic 30.0%
TCTTGCTTCTCTTAAATACA+TGG - chr5_4:50078697-50078716 Msa0855870:CDS 30.0%
!! CAAATCTAAAGCATCGATAA+AGG + chr5_4:50082526-50082545 None:intergenic 30.0%
TGACAAACGCATATACTAAT+TGG + chr5_4:50082710-50082729 None:intergenic 30.0%
AGAGGAACTAAAATTACACT+TGG + chr5_4:50079122-50079141 None:intergenic 30.0%
AAGCAAAGCTAAAATGCATA+AGG + chr5_4:50082860-50082879 None:intergenic 30.0%
! TAGGCTCTTTATTTAAGTCA+TGG - chr5_4:50079356-50079375 Msa0855870:intron 30.0%
! ATTTACAGCATTCTAGAGAA+GGG + chr5_4:50079407-50079426 None:intergenic 30.0%
! TATTTACAGCATTCTAGAGA+AGG + chr5_4:50079408-50079427 None:intergenic 30.0%
TAACATTGAGCTTTCAATAG+AGG - chr5_4:50079576-50079595 Msa0855870:CDS 30.0%
! TAAAAGAAAGAGTGTGCTAA+TGG - chr5_4:50079627-50079646 Msa0855870:CDS 30.0%
AAGATAAATAATGTCGTCTC+TGG - chr5_4:50079736-50079755 Msa0855870:CDS 30.0%
!! AAAACTTAGGGAATTTGCTA+GGG - chr5_4:50079903-50079922 Msa0855870:intron 30.0%
CAAATTAAAGGTAGGAACTA+GGG + chr5_4:50080180-50080199 None:intergenic 30.0%
TCAAATTAAAGGTAGGAACT+AGG + chr5_4:50080181-50080200 None:intergenic 30.0%
AAGCTATGTTAGGTGAATAT+AGG - chr5_4:50080217-50080236 Msa0855870:intron 30.0%
! TTCCTCTGAAAGTAATAGTT+TGG - chr5_4:50080327-50080346 Msa0855870:intron 30.0%
AATAGAAGAAATGCAACCAT+GGG + chr5_4:50080425-50080444 None:intergenic 30.0%
TTGCATGGAAAAAAACAAAC+AGG + chr5_4:50080688-50080707 None:intergenic 30.0%
AAGCTTGAGGAAGAAATTAA+AGG - chr5_4:50080980-50080999 Msa0855870:CDS 30.0%
TCGATCAACATACAATTTCA+AGG - chr5_4:50081204-50081223 Msa0855870:CDS 30.0%
ATCAACATACAATTTCAAGG+CGG - chr5_4:50081207-50081226 Msa0855870:CDS 30.0%
CGGAAGACATTTCAAATTTA+CGG - chr5_4:50081227-50081246 Msa0855870:intron 30.0%
! ACGGAAAGATTTGATTTCAA+TGG - chr5_4:50081246-50081265 Msa0855870:intron 30.0%
! TGCTGCATTCAGTAATTTTT+AGG + chr5_4:50081389-50081408 None:intergenic 30.0%
CATAACACGTATCACAAAAT+TGG + chr5_4:50081419-50081438 None:intergenic 30.0%
AGCACCTCAAATATTAAAAG+TGG + chr5_4:50081489-50081508 None:intergenic 30.0%
GATATGGATTCACTGTTTGA+AGG - chr5_4:50078014-50078033 Msa0855870:three_prime_UTR 35.0%
AGAGAAGATATTCTCGTCAA+GGG + chr5_4:50078159-50078178 None:intergenic 35.0%
TGTTGATGTTGATGTTGATC+TGG - chr5_4:50078340-50078359 Msa0855870:CDS 35.0%
ACTATCACTAGATGGTTGTT+GGG + chr5_4:50078438-50078457 None:intergenic 35.0%
TACTATCACTAGATGGTTGT+TGG + chr5_4:50078439-50078458 None:intergenic 35.0%
TCACTAGTACTATCACTAGA+TGG + chr5_4:50078446-50078465 None:intergenic 35.0%
! CTTCACAAGCTTGTTCTAAT+TGG + chr5_4:50078733-50078752 None:intergenic 35.0%
!!! AGATTTTGAAACCGCTGAAA+TGG - chr5_4:50078757-50078776 Msa0855870:CDS 35.0%
ATCAGCTTGTCTCAATGATT+CGG + chr5_4:50078828-50078847 None:intergenic 35.0%
ATTACTCCACCATTATGCAA+CGG - chr5_4:50078925-50078944 Msa0855870:intron 35.0%
ATATACTGACCGTTGCATAA+TGG + chr5_4:50078937-50078956 None:intergenic 35.0%
! AATGCACTCCATTCTTTTAG+AGG + chr5_4:50079140-50079159 None:intergenic 35.0%
ATCAACAAGTCTTCCAGTAA+TGG + chr5_4:50079218-50079237 None:intergenic 35.0%
!! CAATGATGTTGCTTTCTTCA+TGG + chr5_4:50079443-50079462 None:intergenic 35.0%
! GCACACTCTTTCTTTTACAA+AGG + chr5_4:50079624-50079643 None:intergenic 35.0%
! AATTGATAACCTTCTCGTTC+AGG - chr5_4:50079864-50079883 Msa0855870:intron 35.0%
AAAGAATGGGAGCAAAACTT+AGG - chr5_4:50079890-50079909 Msa0855870:intron 35.0%
AAGAATGGGAGCAAAACTTA+GGG - chr5_4:50079891-50079910 Msa0855870:intron 35.0%
! CAAAACTTAGGGAATTTGCT+AGG - chr5_4:50079902-50079921 Msa0855870:intron 35.0%
ATGTCATCTATACTGAAGTC+CGG - chr5_4:50079982-50080001 Msa0855870:CDS 35.0%
ACTGAGACTTACAAACAATG+AGG - chr5_4:50080014-50080033 Msa0855870:CDS 35.0%
AGAAGTGAAATTGTTTCAGC+AGG - chr5_4:50080050-50080069 Msa0855870:CDS 35.0%
AGTACAAGAATTAACCTGCA+AGG + chr5_4:50080097-50080116 None:intergenic 35.0%
TGTCACGTCAAATTAAAGGT+AGG + chr5_4:50080188-50080207 None:intergenic 35.0%
TGGATGTCACGTCAAATTAA+AGG + chr5_4:50080192-50080211 None:intergenic 35.0%
GACCAAACTATTACTTTCAG+AGG + chr5_4:50080332-50080351 None:intergenic 35.0%
!!! AGACAATTTTTTACCACCCA+TGG - chr5_4:50080406-50080425 Msa0855870:intron 35.0%
GAATAGAAGAAATGCAACCA+TGG + chr5_4:50080426-50080445 None:intergenic 35.0%
!! TTTGACATGTGTCCACTTTT+TGG + chr5_4:50080507-50080526 None:intergenic 35.0%
ACACTTGTTCATTTCCTCAA+TGG - chr5_4:50080526-50080545 Msa0855870:intron 35.0%
CACTTGTTCATTTCCTCAAT+GGG - chr5_4:50080527-50080546 Msa0855870:intron 35.0%
!! TCCTCAATGGGTTTTTACAT+AGG - chr5_4:50080539-50080558 Msa0855870:intron 35.0%
ACCTATGTAAAAACCCATTG+AGG + chr5_4:50080543-50080562 None:intergenic 35.0%
GAAAATAATCCTCTGCTTGA+AGG + chr5_4:50080801-50080820 None:intergenic 35.0%
!!! TTTTTTTCCGCTTCAAGTTC+TGG + chr5_4:50080839-50080858 None:intergenic 35.0%
ATTTAGCCTCACTAGCTATT+CGG + chr5_4:50080898-50080917 None:intergenic 35.0%
TGAGAAAGAGAATATCCAGA+TGG - chr5_4:50080928-50080947 Msa0855870:CDS 35.0%
GAGAAAGAGAATATCCAGAT+GGG - chr5_4:50080929-50080948 Msa0855870:CDS 35.0%
!! AAGCTTTTCAAGATTCGAAG+CGG + chr5_4:50080966-50080985 None:intergenic 35.0%
TTCGAATCTTGAAAAGCTTG+AGG - chr5_4:50080967-50080986 Msa0855870:CDS 35.0%
AGTCTCCTGCAATTTATCAA+GGG + chr5_4:50081008-50081027 None:intergenic 35.0%
TGAGGGAATGATCTTATTGA+AGG - chr5_4:50081027-50081046 Msa0855870:CDS 35.0%
GATATGGATTCACTGTTTGA+AGG - chr5_4:50078014-50078033 Msa0855870:three_prime_UTR 35.0%
AGAGAAGATATTCTCGTCAA+GGG + chr5_4:50078159-50078178 None:intergenic 35.0%
ACTATCACTAGATGGTTGTT+GGG + chr5_4:50078438-50078457 None:intergenic 35.0%
TACTATCACTAGATGGTTGT+TGG + chr5_4:50078439-50078458 None:intergenic 35.0%
TCACTAGTACTATCACTAGA+TGG + chr5_4:50078446-50078465 None:intergenic 35.0%
! CTTCACAAGCTTGTTCTAAT+TGG + chr5_4:50078733-50078752 None:intergenic 35.0%
!!! AGATTTTGAAACCGCTGAAA+TGG - chr5_4:50078757-50078776 Msa0855870:CDS 35.0%
ATCAGCTTGTCTCAATGATT+CGG + chr5_4:50078828-50078847 None:intergenic 35.0%
ATTACTCCACCATTATGCAA+CGG - chr5_4:50078925-50078944 Msa0855870:intron 35.0%
ATATACTGACCGTTGCATAA+TGG + chr5_4:50078937-50078956 None:intergenic 35.0%
! AATGCACTCCATTCTTTTAG+AGG + chr5_4:50079140-50079159 None:intergenic 35.0%
ATCAACAAGTCTTCCAGTAA+TGG + chr5_4:50079218-50079237 None:intergenic 35.0%
!! CAATGATGTTGCTTTCTTCA+TGG + chr5_4:50079443-50079462 None:intergenic 35.0%
! GCACACTCTTTCTTTTACAA+AGG + chr5_4:50079624-50079643 None:intergenic 35.0%
! AATTGATAACCTTCTCGTTC+AGG - chr5_4:50079864-50079883 Msa0855870:intron 35.0%
AAAGAATGGGAGCAAAACTT+AGG - chr5_4:50079890-50079909 Msa0855870:intron 35.0%
AAGAATGGGAGCAAAACTTA+GGG - chr5_4:50079891-50079910 Msa0855870:intron 35.0%
! CAAAACTTAGGGAATTTGCT+AGG - chr5_4:50079902-50079921 Msa0855870:intron 35.0%
ATGTCATCTATACTGAAGTC+CGG - chr5_4:50079982-50080001 Msa0855870:CDS 35.0%
ACTGAGACTTACAAACAATG+AGG - chr5_4:50080014-50080033 Msa0855870:CDS 35.0%
AGAAGTGAAATTGTTTCAGC+AGG - chr5_4:50080050-50080069 Msa0855870:CDS 35.0%
AGTACAAGAATTAACCTGCA+AGG + chr5_4:50080097-50080116 None:intergenic 35.0%
TGTCACGTCAAATTAAAGGT+AGG + chr5_4:50080188-50080207 None:intergenic 35.0%
TGGATGTCACGTCAAATTAA+AGG + chr5_4:50080192-50080211 None:intergenic 35.0%
GACCAAACTATTACTTTCAG+AGG + chr5_4:50080332-50080351 None:intergenic 35.0%
!!! AGACAATTTTTTACCACCCA+TGG - chr5_4:50080406-50080425 Msa0855870:intron 35.0%
GAATAGAAGAAATGCAACCA+TGG + chr5_4:50080426-50080445 None:intergenic 35.0%
!! TTTGACATGTGTCCACTTTT+TGG + chr5_4:50080507-50080526 None:intergenic 35.0%
ACACTTGTTCATTTCCTCAA+TGG - chr5_4:50080526-50080545 Msa0855870:intron 35.0%
CACTTGTTCATTTCCTCAAT+GGG - chr5_4:50080527-50080546 Msa0855870:intron 35.0%
!! TCCTCAATGGGTTTTTACAT+AGG - chr5_4:50080539-50080558 Msa0855870:intron 35.0%
ACCTATGTAAAAACCCATTG+AGG + chr5_4:50080543-50080562 None:intergenic 35.0%
GAAAATAATCCTCTGCTTGA+AGG + chr5_4:50080801-50080820 None:intergenic 35.0%
!!! TTTTTTTCCGCTTCAAGTTC+TGG + chr5_4:50080839-50080858 None:intergenic 35.0%
ATTTAGCCTCACTAGCTATT+CGG + chr5_4:50080898-50080917 None:intergenic 35.0%
TGAGAAAGAGAATATCCAGA+TGG - chr5_4:50080928-50080947 Msa0855870:CDS 35.0%
GAGAAAGAGAATATCCAGAT+GGG - chr5_4:50080929-50080948 Msa0855870:CDS 35.0%
!! AAGCTTTTCAAGATTCGAAG+CGG + chr5_4:50080966-50080985 None:intergenic 35.0%
TTCGAATCTTGAAAAGCTTG+AGG - chr5_4:50080967-50080986 Msa0855870:CDS 35.0%
AGTCTCCTGCAATTTATCAA+GGG + chr5_4:50081008-50081027 None:intergenic 35.0%
TGAGGGAATGATCTTATTGA+AGG - chr5_4:50081027-50081046 Msa0855870:CDS 35.0%
GAGAAGATATTCTCGTCAAG+GGG + chr5_4:50078158-50078177 None:intergenic 40.0%
CAGAGAAGATATTCTCGTCA+AGG + chr5_4:50078160-50078179 None:intergenic 40.0%
!!! AGATCATGGTCGTTTTGAAG+CGG + chr5_4:50078203-50078222 None:intergenic 40.0%
! GTTTTCTCCTTCTCTGATGT+TGG + chr5_4:50078265-50078284 None:intergenic 40.0%
ATCAACATCAACATCAACGG+TGG + chr5_4:50078327-50078346 None:intergenic 40.0%
TGTTGATGTTGATCTGGATG+TGG - chr5_4:50078346-50078365 Msa0855870:CDS 40.0%
!!! GTATCGTCTCCCTTATTTTC+TGG + chr5_4:50078580-50078599 None:intergenic 40.0%
! GATTTGTTTGTCCTTCTCAG+CGG + chr5_4:50078801-50078820 None:intergenic 40.0%
ATGTATGTCTACTCTAGCCT+TGG - chr5_4:50078977-50078996 Msa0855870:intron 40.0%
! TGTATGTCTACTCTAGCCTT+GGG - chr5_4:50078978-50078997 Msa0855870:intron 40.0%
GCTTCTCATAATGCCATTAC+TGG - chr5_4:50079202-50079221 Msa0855870:intron 40.0%
!! GTTTGCTGGCTTATTTCTCT+AGG - chr5_4:50079337-50079356 Msa0855870:intron 40.0%
! GTTTTCATCATCAGAAGCCT+TGG - chr5_4:50079486-50079505 Msa0855870:CDS 40.0%
AGCCTTGGAGGTTAAAAAGA+TGG - chr5_4:50079501-50079520 Msa0855870:CDS 40.0%
! CTCCATCTTTTTAACCTCCA+AGG + chr5_4:50079506-50079525 None:intergenic 40.0%
GGAGGTTAAAAAGATGGAGT+TGG - chr5_4:50079507-50079526 Msa0855870:CDS 40.0%
! GAGTGTGCTAATGGATGAAT+TGG - chr5_4:50079636-50079655 Msa0855870:CDS 40.0%
AGAGATTCAGTCAACCATTG+AGG - chr5_4:50079765-50079784 Msa0855870:CDS 40.0%
TCAACCATTGAGGTGAAGTA+TGG - chr5_4:50079775-50079794 Msa0855870:CDS 40.0%
TTTGCCATACTTCACCTCAA+TGG + chr5_4:50079782-50079801 None:intergenic 40.0%
CTTCTTCAGTGACAGAGTTT+CGG + chr5_4:50079839-50079858 None:intergenic 40.0%
TTCTTTCTTCCTGAACGAGA+AGG + chr5_4:50079876-50079895 None:intergenic 40.0%
TCTCGTTCAGGAAGAAAGAA+TGG - chr5_4:50079876-50079895 Msa0855870:intron 40.0%
CTCGTTCAGGAAGAAAGAAT+GGG - chr5_4:50079877-50079896 Msa0855870:intron 40.0%
TGTCATCTATACTGAAGTCC+GGG - chr5_4:50079983-50080002 Msa0855870:CDS 40.0%
AACAATGAGGAAAAGCTCTC+TGG - chr5_4:50080027-50080046 Msa0855870:CDS 40.0%
ATCCAAGCTCAAGCTATGTT+AGG - chr5_4:50080207-50080226 Msa0855870:intron 40.0%
AAAACTCCCAACACAAGTCA+AGG - chr5_4:50080379-50080398 Msa0855870:intron 40.0%
!! CTCATTCCTTGACTTGTGTT+GGG + chr5_4:50080388-50080407 None:intergenic 40.0%
!! TCTCATTCCTTGACTTGTGT+TGG + chr5_4:50080389-50080408 None:intergenic 40.0%
!! CTAGAGTCTGTGTTTTTGCA+TGG + chr5_4:50080703-50080722 None:intergenic 40.0%
AAAAAGTTGCTACTGCTGCA+AGG - chr5_4:50080855-50080874 Msa0855870:CDS 40.0%
TACTGCTGCAAGGAATTTCA+AGG - chr5_4:50080865-50080884 Msa0855870:CDS 40.0%
TTTAGCCTCACTAGCTATTC+GGG + chr5_4:50080897-50080916 None:intergenic 40.0%
AGAGAATATCCAGATGGGAA+TGG - chr5_4:50080934-50080953 Msa0855870:CDS 40.0%
CAGTCTCCTGCAATTTATCA+AGG + chr5_4:50081009-50081028 None:intergenic 40.0%
TGATAAATTGCAGGAGACTG+AGG - chr5_4:50081009-50081028 Msa0855870:CDS 40.0%
GATAAATTGCAGGAGACTGA+GGG - chr5_4:50081010-50081029 Msa0855870:CDS 40.0%
GAAGGAGAAAGAGTTAGCAA+TGG - chr5_4:50081045-50081064 Msa0855870:CDS 40.0%
TTCGACATCACCCATTTCTT+GGG + chr5_4:50081128-50081147 None:intergenic 40.0%
GGATCGAATCTGAATGAACA+TGG - chr5_4:50081672-50081691 Msa0855870:intron 40.0%
CGAATCTGAATGAACATGGA+AGG - chr5_4:50081676-50081695 Msa0855870:intron 40.0%
ATCTGAATGAACATGGAAGG+TGG - chr5_4:50081679-50081698 Msa0855870:intron 40.0%
GAGAAGATATTCTCGTCAAG+GGG + chr5_4:50078158-50078177 None:intergenic 40.0%
CAGAGAAGATATTCTCGTCA+AGG + chr5_4:50078160-50078179 None:intergenic 40.0%
!!! AGATCATGGTCGTTTTGAAG+CGG + chr5_4:50078203-50078222 None:intergenic 40.0%
! GTTTTCTCCTTCTCTGATGT+TGG + chr5_4:50078265-50078284 None:intergenic 40.0%
CACATCCAGATCAACATCAA+CGG + chr5_4:50078348-50078367 None:intergenic 40.0%
!!! GTATCGTCTCCCTTATTTTC+TGG + chr5_4:50078580-50078599 None:intergenic 40.0%
! GATTTGTTTGTCCTTCTCAG+CGG + chr5_4:50078801-50078820 None:intergenic 40.0%
ATGTATGTCTACTCTAGCCT+TGG - chr5_4:50078977-50078996 Msa0855870:intron 40.0%
! TGTATGTCTACTCTAGCCTT+GGG - chr5_4:50078978-50078997 Msa0855870:intron 40.0%
GCTTCTCATAATGCCATTAC+TGG - chr5_4:50079202-50079221 Msa0855870:intron 40.0%
!! GTTTGCTGGCTTATTTCTCT+AGG - chr5_4:50079337-50079356 Msa0855870:intron 40.0%
! GTTTTCATCATCAGAAGCCT+TGG - chr5_4:50079486-50079505 Msa0855870:CDS 40.0%
AGCCTTGGAGGTTAAAAAGA+TGG - chr5_4:50079501-50079520 Msa0855870:CDS 40.0%
! CTCCATCTTTTTAACCTCCA+AGG + chr5_4:50079506-50079525 None:intergenic 40.0%
GGAGGTTAAAAAGATGGAGT+TGG - chr5_4:50079507-50079526 Msa0855870:CDS 40.0%
! GAGTGTGCTAATGGATGAAT+TGG - chr5_4:50079636-50079655 Msa0855870:CDS 40.0%
AGAGATTCAGTCAACCATTG+AGG - chr5_4:50079765-50079784 Msa0855870:CDS 40.0%
TCAACCATTGAGGTGAAGTA+TGG - chr5_4:50079775-50079794 Msa0855870:CDS 40.0%
TTTGCCATACTTCACCTCAA+TGG + chr5_4:50079782-50079801 None:intergenic 40.0%
CTTCTTCAGTGACAGAGTTT+CGG + chr5_4:50079839-50079858 None:intergenic 40.0%
TTCTTTCTTCCTGAACGAGA+AGG + chr5_4:50079876-50079895 None:intergenic 40.0%
TCTCGTTCAGGAAGAAAGAA+TGG - chr5_4:50079876-50079895 Msa0855870:intron 40.0%
CTCGTTCAGGAAGAAAGAAT+GGG - chr5_4:50079877-50079896 Msa0855870:intron 40.0%
TGTCATCTATACTGAAGTCC+GGG - chr5_4:50079983-50080002 Msa0855870:CDS 40.0%
AACAATGAGGAAAAGCTCTC+TGG - chr5_4:50080027-50080046 Msa0855870:CDS 40.0%
ATCCAAGCTCAAGCTATGTT+AGG - chr5_4:50080207-50080226 Msa0855870:intron 40.0%
AAAACTCCCAACACAAGTCA+AGG - chr5_4:50080379-50080398 Msa0855870:intron 40.0%
!! CTCATTCCTTGACTTGTGTT+GGG + chr5_4:50080388-50080407 None:intergenic 40.0%
!! TCTCATTCCTTGACTTGTGT+TGG + chr5_4:50080389-50080408 None:intergenic 40.0%
!! CTAGAGTCTGTGTTTTTGCA+TGG + chr5_4:50080703-50080722 None:intergenic 40.0%
AAAAAGTTGCTACTGCTGCA+AGG - chr5_4:50080855-50080874 Msa0855870:CDS 40.0%
TACTGCTGCAAGGAATTTCA+AGG - chr5_4:50080865-50080884 Msa0855870:CDS 40.0%
TTTAGCCTCACTAGCTATTC+GGG + chr5_4:50080897-50080916 None:intergenic 40.0%
AGAGAATATCCAGATGGGAA+TGG - chr5_4:50080934-50080953 Msa0855870:CDS 40.0%
CAGTCTCCTGCAATTTATCA+AGG + chr5_4:50081009-50081028 None:intergenic 40.0%
TGATAAATTGCAGGAGACTG+AGG - chr5_4:50081009-50081028 Msa0855870:CDS 40.0%
GATAAATTGCAGGAGACTGA+GGG - chr5_4:50081010-50081029 Msa0855870:CDS 40.0%
GAAGGAGAAAGAGTTAGCAA+TGG - chr5_4:50081045-50081064 Msa0855870:CDS 40.0%
TTCGACATCACCCATTTCTT+GGG + chr5_4:50081128-50081147 None:intergenic 40.0%
GGATTCACTGTTTGAAGGGA+TGG - chr5_4:50078019-50078038 Msa0855870:three_prime_UTR 45.0%
GTTGTTCAATTTGGGCAGCA+GGG + chr5_4:50078055-50078074 None:intergenic 45.0%
TGCCCAAATTGAACAACCAG+CGG - chr5_4:50078058-50078077 Msa0855870:three_prime_UTR 45.0%
! CTCCGCTGGTTGTTCAATTT+GGG + chr5_4:50078063-50078082 None:intergenic 45.0%
CAGAGAAGGAGAAAACGATC+TGG - chr5_4:50078269-50078288 Msa0855870:CDS 45.0%
! AAACGATCTGGCTTGAGGAT+AGG - chr5_4:50078281-50078300 Msa0855870:CDS 45.0%
! TCTGGCTTGAGGATAGGTTA+TGG - chr5_4:50078287-50078306 Msa0855870:CDS 45.0%
AGGGAATCGGGAATATGAAG+AGG + chr5_4:50078398-50078417 None:intergenic 45.0%
AGTACTAACGACGAGGGAAT+CGG + chr5_4:50078411-50078430 None:intergenic 45.0%
GGTAACAGTACTAACGACGA+GGG + chr5_4:50078417-50078436 None:intergenic 45.0%
AACAGCAGGAGCAACATCAA+TGG + chr5_4:50078492-50078511 None:intergenic 45.0%
TGCCATCAGGAGTAGAAGAA+AGG - chr5_4:50078658-50078677 Msa0855870:CDS 45.0%
!! GTGTTGGCTAACCATTTCAG+CGG + chr5_4:50078771-50078790 None:intergenic 45.0%
TACTGACCGTTGCATAATGG+TGG + chr5_4:50078934-50078953 None:intergenic 45.0%
TTCATCATCAGAAGCCTTGG+AGG - chr5_4:50079489-50079508 Msa0855870:CDS 45.0%
CGAAACTCTGTCACTGAAGA+AGG - chr5_4:50079837-50079856 Msa0855870:CDS 45.0%
!! GGAATTTGCTAGGGTTTCTG+AGG - chr5_4:50079912-50079931 Msa0855870:CDS 45.0%
! ATTTGCTAGGGTTTCTGAGG+AGG - chr5_4:50079915-50079934 Msa0855870:CDS 45.0%
! GTTTCTGAGGAGGAAGCTAA+AGG - chr5_4:50079925-50079944 Msa0855870:CDS 45.0%
AGGAGGAAGCTAAAGGATAC+AGG - chr5_4:50079932-50079951 Msa0855870:CDS 45.0%
GGAGGAAGCTAAAGGATACA+GGG - chr5_4:50079933-50079952 Msa0855870:CDS 45.0%
GTCATCTATACTGAAGTCCG+GGG - chr5_4:50079984-50080003 Msa0855870:CDS 45.0%
AAGTCTCAGTTTATCCTCCC+CGG + chr5_4:50080004-50080023 None:intergenic 45.0%
ATTAACCTGCAAGGAAGCTC+TGG + chr5_4:50080088-50080107 None:intergenic 45.0%
CACCTAACATAGCTTGAGCT+TGG + chr5_4:50080212-50080231 None:intergenic 45.0%
AGAAGAAATGCAACCATGGG+TGG + chr5_4:50080422-50080441 None:intergenic 45.0%
TGAAGGATGCTATGTCTTGC+TGG + chr5_4:50080784-50080803 None:intergenic 45.0%
ACATAGCATCCTTCAAGCAG+AGG - chr5_4:50080789-50080808 Msa0855870:CDS 45.0%
GAGAGTTCCAGAACTTGAAG+CGG - chr5_4:50080829-50080848 Msa0855870:CDS 45.0%
TGCTGCAAGGAATTTCAAGG+AGG - chr5_4:50080868-50080887 Msa0855870:CDS 45.0%
AGGCACCCTTGATAAATTGC+AGG - chr5_4:50081000-50081019 Msa0855870:CDS 45.0%
AAAAGCAGCTGCCCAAGAAA+TGG - chr5_4:50081114-50081133 Msa0855870:CDS 45.0%
AAAGCAGCTGCCCAAGAAAT+GGG - chr5_4:50081115-50081134 Msa0855870:CDS 45.0%
CTTCGACATCACCCATTTCT+TGG + chr5_4:50081129-50081148 None:intergenic 45.0%
!! TTTTTAGGAGCACACGCATC+TGG + chr5_4:50081374-50081393 None:intergenic 45.0%
TGAATGAACATGGAAGGTGG+CGG - chr5_4:50081682-50081701 Msa0855870:intron 45.0%
GGATTCACTGTTTGAAGGGA+TGG - chr5_4:50078019-50078038 Msa0855870:three_prime_UTR 45.0%
GTTGTTCAATTTGGGCAGCA+GGG + chr5_4:50078055-50078074 None:intergenic 45.0%
TGCCCAAATTGAACAACCAG+CGG - chr5_4:50078058-50078077 Msa0855870:three_prime_UTR 45.0%
! CTCCGCTGGTTGTTCAATTT+GGG + chr5_4:50078063-50078082 None:intergenic 45.0%
CAGAGAAGGAGAAAACGATC+TGG - chr5_4:50078269-50078288 Msa0855870:CDS 45.0%
! AAACGATCTGGCTTGAGGAT+AGG - chr5_4:50078281-50078300 Msa0855870:CDS 45.0%
! TCTGGCTTGAGGATAGGTTA+TGG - chr5_4:50078287-50078306 Msa0855870:CDS 45.0%
ATCCAGATCAACATCAACGG+TGG + chr5_4:50082019-50082038 None:intergenic 45.0%
CGTTGATGTTGATCTGGATG+TGG - chr5_4:50082020-50082039 Msa0855870:intron 45.0%
AGTACTAACGACGAGGGAAT+CGG + chr5_4:50078411-50078430 None:intergenic 45.0%
GGTAACAGTACTAACGACGA+GGG + chr5_4:50078417-50078436 None:intergenic 45.0%
AACAGCAGGAGCAACATCAA+TGG + chr5_4:50078492-50078511 None:intergenic 45.0%
TGCCATCAGGAGTAGAAGAA+AGG - chr5_4:50078658-50078677 Msa0855870:CDS 45.0%
!! GTGTTGGCTAACCATTTCAG+CGG + chr5_4:50078771-50078790 None:intergenic 45.0%
TACTGACCGTTGCATAATGG+TGG + chr5_4:50078934-50078953 None:intergenic 45.0%
TTCATCATCAGAAGCCTTGG+AGG - chr5_4:50079489-50079508 Msa0855870:CDS 45.0%
CGAAACTCTGTCACTGAAGA+AGG - chr5_4:50079837-50079856 Msa0855870:CDS 45.0%
!! GGAATTTGCTAGGGTTTCTG+AGG - chr5_4:50079912-50079931 Msa0855870:CDS 45.0%
! ATTTGCTAGGGTTTCTGAGG+AGG - chr5_4:50079915-50079934 Msa0855870:CDS 45.0%
! GTTTCTGAGGAGGAAGCTAA+AGG - chr5_4:50079925-50079944 Msa0855870:CDS 45.0%
AGGAGGAAGCTAAAGGATAC+AGG - chr5_4:50079932-50079951 Msa0855870:CDS 45.0%
GGAGGAAGCTAAAGGATACA+GGG - chr5_4:50079933-50079952 Msa0855870:CDS 45.0%
GTCATCTATACTGAAGTCCG+GGG - chr5_4:50079984-50080003 Msa0855870:CDS 45.0%
AAGTCTCAGTTTATCCTCCC+CGG + chr5_4:50080004-50080023 None:intergenic 45.0%
ATTAACCTGCAAGGAAGCTC+TGG + chr5_4:50080088-50080107 None:intergenic 45.0%
CACCTAACATAGCTTGAGCT+TGG + chr5_4:50080212-50080231 None:intergenic 45.0%
AGAAGAAATGCAACCATGGG+TGG + chr5_4:50080422-50080441 None:intergenic 45.0%
TGAAGGATGCTATGTCTTGC+TGG + chr5_4:50080784-50080803 None:intergenic 45.0%
ACATAGCATCCTTCAAGCAG+AGG - chr5_4:50080789-50080808 Msa0855870:CDS 45.0%
GAGAGTTCCAGAACTTGAAG+CGG - chr5_4:50080829-50080848 Msa0855870:CDS 45.0%
TGCTGCAAGGAATTTCAAGG+AGG - chr5_4:50080868-50080887 Msa0855870:CDS 45.0%
AGGCACCCTTGATAAATTGC+AGG - chr5_4:50081000-50081019 Msa0855870:CDS 45.0%
AAAAGCAGCTGCCCAAGAAA+TGG - chr5_4:50081114-50081133 Msa0855870:CDS 45.0%
AAAGCAGCTGCCCAAGAAAT+GGG - chr5_4:50081115-50081134 Msa0855870:CDS 45.0%
CTTCGACATCACCCATTTCT+TGG + chr5_4:50081129-50081148 None:intergenic 45.0%
!! TTTTTAGGAGCACACGCATC+TGG + chr5_4:50081374-50081393 None:intergenic 45.0%
GGTTGTTCAATTTGGGCAGC+AGG + chr5_4:50078056-50078075 None:intergenic 50.0%
! CCTCCGCTGGTTGTTCAATT+TGG + chr5_4:50078064-50078083 None:intergenic 50.0%
CCAAATTGAACAACCAGCGG+AGG - chr5_4:50078061-50078080 Msa0855870:three_prime_UTR 50.0%
AATTGAACAACCAGCGGAGG+AGG - chr5_4:50078064-50078083 Msa0855870:three_prime_UTR 50.0%
CTTCGCACCAACATCAGAGA+AGG - chr5_4:50078255-50078274 Msa0855870:CDS 50.0%
! GGAGAAAACGATCTGGCTTG+AGG - chr5_4:50078276-50078295 Msa0855870:CDS 50.0%
TCGGGAATATGAAGAGGAGC+CGG + chr5_4:50078392-50078411 None:intergenic 50.0%
GTACTAACGACGAGGGAATC+GGG + chr5_4:50078410-50078429 None:intergenic 50.0%
GGGTAACAGTACTAACGACG+AGG + chr5_4:50078418-50078437 None:intergenic 50.0%
! AACATCAATGGAGGTGGTGG+TGG + chr5_4:50078480-50078499 None:intergenic 50.0%
AGCAACATCAATGGAGGTGG+TGG + chr5_4:50078483-50078502 None:intergenic 50.0%
AGGAGCAACATCAATGGAGG+TGG + chr5_4:50078486-50078505 None:intergenic 50.0%
AGCAGGAGCAACATCAATGG+AGG + chr5_4:50078489-50078508 None:intergenic 50.0%
GTAGCGCTAACACTAACAGC+AGG + chr5_4:50078506-50078525 None:intergenic 50.0%
AGTTGAGCAGTTGACGAGCA+TGG + chr5_4:50078616-50078635 None:intergenic 50.0%
CTCTGCATCTTCTGCTCGAA+AGG - chr5_4:50078634-50078653 Msa0855870:CDS 50.0%
GGCCTTTCTTCTACTCCTGA+TGG + chr5_4:50078663-50078682 None:intergenic 50.0%
AGCAGCTATGTGAGAGTCGA+GGG + chr5_4:50078888-50078907 None:intergenic 50.0%
!! TACTCTAGCCTTGGGTGTGA+GGG - chr5_4:50078986-50079005 Msa0855870:intron 50.0%
ATCTATACTGAAGTCCGGGG+AGG - chr5_4:50079987-50080006 Msa0855870:CDS 50.0%
TCCAGACCTGTGCTTAAGCA+CGG - chr5_4:50080574-50080593 Msa0855870:intron 50.0%
GGTTGTTCAATTTGGGCAGC+AGG + chr5_4:50078056-50078075 None:intergenic 50.0%
! CCTCCGCTGGTTGTTCAATT+TGG + chr5_4:50078064-50078083 None:intergenic 50.0%
CCAAATTGAACAACCAGCGG+AGG - chr5_4:50078061-50078080 Msa0855870:three_prime_UTR 50.0%
AATTGAACAACCAGCGGAGG+AGG - chr5_4:50078064-50078083 Msa0855870:three_prime_UTR 50.0%
CTTCGCACCAACATCAGAGA+AGG - chr5_4:50078255-50078274 Msa0855870:CDS 50.0%
! GGAGAAAACGATCTGGCTTG+AGG - chr5_4:50078276-50078295 Msa0855870:CDS 50.0%
CACCACCGTTGATGTTGATC+TGG - chr5_4:50082014-50082033 Msa0855870:intron 50.0%
AGGGAATCGGGAATATGAGG+AGG + chr5_4:50082072-50082091 None:intergenic 50.0%
ACGAGGGAATCGGGAATATG+AGG + chr5_4:50078401-50078420 None:intergenic 50.0%
GTACTAACGACGAGGGAATC+GGG + chr5_4:50078410-50078429 None:intergenic 50.0%
GGGTAACAGTACTAACGACG+AGG + chr5_4:50078418-50078437 None:intergenic 50.0%
! AACATCAATGGAGGTGGTGG+TGG + chr5_4:50078480-50078499 None:intergenic 50.0%
AGCAACATCAATGGAGGTGG+TGG + chr5_4:50078483-50078502 None:intergenic 50.0%
AGGAGCAACATCAATGGAGG+TGG + chr5_4:50078486-50078505 None:intergenic 50.0%
AGCAGGAGCAACATCAATGG+AGG + chr5_4:50078489-50078508 None:intergenic 50.0%
GTAGCGCTAACACTAACAGC+AGG + chr5_4:50078506-50078525 None:intergenic 50.0%
AGTTGAGCAGTTGACGAGCA+TGG + chr5_4:50078616-50078635 None:intergenic 50.0%
CTCTGCATCTTCTGCTCGAA+AGG - chr5_4:50078634-50078653 Msa0855870:CDS 50.0%
GGCCTTTCTTCTACTCCTGA+TGG + chr5_4:50078663-50078682 None:intergenic 50.0%
AGCAGCTATGTGAGAGTCGA+GGG + chr5_4:50078888-50078907 None:intergenic 50.0%
!! TACTCTAGCCTTGGGTGTGA+GGG - chr5_4:50078986-50079005 Msa0855870:intron 50.0%
ATCTATACTGAAGTCCGGGG+AGG - chr5_4:50079987-50080006 Msa0855870:CDS 50.0%
TCCAGACCTGTGCTTAAGCA+CGG - chr5_4:50080574-50080593 Msa0855870:intron 50.0%
GTTTACCCGTGCTTAAGCAC+AGG + chr5_4:50084255-50084274 None:intergenic 50.0%
TGATTCTTCTCCTCCTCCGC+TGG + chr5_4:50078077-50078096 None:intergenic 55.0%
TTGAAGCGGATCGACGACGA+GGG + chr5_4:50078189-50078208 None:intergenic 55.0%
! TTTGAAGCGGATCGACGACG+AGG + chr5_4:50078190-50078209 None:intergenic 55.0%
TCCTTCTCCTTCTCCTTCGC+CGG - chr5_4:50078370-50078389 Msa0855870:CDS 55.0%
ATATGAAGAGGAGCCGGCGA+AGG + chr5_4:50078386-50078405 None:intergenic 55.0%
!! ATCAATGGAGGTGGTGGTGG+TGG + chr5_4:50078477-50078496 None:intergenic 55.0%
CTGCTCGAAAGGATGCCATC+AGG - chr5_4:50078645-50078664 Msa0855870:CDS 55.0%
! TCTCAGCGGCAGAAAGGTGT+TGG + chr5_4:50078787-50078806 None:intergenic 55.0%
ACACCTTTCTGCCGCTGAGA+AGG - chr5_4:50078787-50078806 Msa0855870:intron 55.0%
TGTCCTTCTCAGCGGCAGAA+AGG + chr5_4:50078793-50078812 None:intergenic 55.0%
CAGCAGCTATGTGAGAGTCG+AGG + chr5_4:50078889-50078908 None:intergenic 55.0%
CGACTCTCACATAGCTGCTG+AGG - chr5_4:50078889-50078908 Msa0855870:intron 55.0%
!! CTACTCTAGCCTTGGGTGTG+AGG - chr5_4:50078985-50079004 Msa0855870:intron 55.0%
AGTAGACACCCTCACACCCA+AGG + chr5_4:50078997-50079016 None:intergenic 55.0%
!! GGTGTGAGGGTGTCTACTCT+AGG - chr5_4:50078999-50079018 Msa0855870:intron 55.0%
GTGACACTCGGGGATGACAA+AGG + chr5_4:50079050-50079069 None:intergenic 55.0%
GTGTTGCACTGTGACACTCG+GGG + chr5_4:50079060-50079079 None:intergenic 55.0%
CGTGTTGCACTGTGACACTC+GGG + chr5_4:50079061-50079080 None:intergenic 55.0%
CCGTGTTGCACTGTGACACT+CGG + chr5_4:50079062-50079081 None:intergenic 55.0%
CCGAGTGTCACAGTGCAACA+CGG - chr5_4:50079059-50079078 Msa0855870:intron 55.0%
GTGTCACAGTGCAACACGGT+AGG - chr5_4:50079063-50079082 Msa0855870:intron 55.0%
CCAGACCTGTGCTTAAGCAC+GGG - chr5_4:50080575-50080594 Msa0855870:intron 55.0%
GTTCACCCGTGCTTAAGCAC+AGG + chr5_4:50080583-50080602 None:intergenic 55.0%
CGGCTGTATCCATTCCCATC+TGG + chr5_4:50080946-50080965 None:intergenic 55.0%
TCTCCTGCTTGCAGAAGCTG+AGG - chr5_4:50081156-50081175 Msa0855870:CDS 55.0%
!! CATGGAAGGTGGCGGAGATA+TGG - chr5_4:50081690-50081709 Msa0855870:intron 55.0%
TGATTCTTCTCCTCCTCCGC+TGG + chr5_4:50078077-50078096 None:intergenic 55.0%
TTGAAGCGGATCGACGACGA+GGG + chr5_4:50078189-50078208 None:intergenic 55.0%
! TTTGAAGCGGATCGACGACG+AGG + chr5_4:50078190-50078209 None:intergenic 55.0%
TCCTTCTCCTTCTCCTTCGC+CGG - chr5_4:50078370-50078389 Msa0855870:CDS 55.0%
TCGGGAATATGAGGAGGAGC+CGG + chr5_4:50082066-50082085 None:intergenic 55.0%
!! ATCAATGGAGGTGGTGGTGG+TGG + chr5_4:50078477-50078496 None:intergenic 55.0%
CTGCTCGAAAGGATGCCATC+AGG - chr5_4:50078645-50078664 Msa0855870:CDS 55.0%
! TCTCAGCGGCAGAAAGGTGT+TGG + chr5_4:50078787-50078806 None:intergenic 55.0%
ACACCTTTCTGCCGCTGAGA+AGG - chr5_4:50078787-50078806 Msa0855870:intron 55.0%
TGTCCTTCTCAGCGGCAGAA+AGG + chr5_4:50078793-50078812 None:intergenic 55.0%
CAGCAGCTATGTGAGAGTCG+AGG + chr5_4:50078889-50078908 None:intergenic 55.0%
CGACTCTCACATAGCTGCTG+AGG - chr5_4:50078889-50078908 Msa0855870:intron 55.0%
!! CTACTCTAGCCTTGGGTGTG+AGG - chr5_4:50078985-50079004 Msa0855870:intron 55.0%
AGTAGACACCCTCACACCCA+AGG + chr5_4:50078997-50079016 None:intergenic 55.0%
!! GGTGTGAGGGTGTCTACTCT+AGG - chr5_4:50078999-50079018 Msa0855870:intron 55.0%
GTGTTGCACTGTGACACTCG+GGG + chr5_4:50079060-50079079 None:intergenic 55.0%
CGTGTTGCACTGTGACACTC+GGG + chr5_4:50079061-50079080 None:intergenic 55.0%
CCGTGTTGCACTGTGACACT+CGG + chr5_4:50079062-50079081 None:intergenic 55.0%
CCGAGTGTCACAGTGCAACA+CGG - chr5_4:50079059-50079078 Msa0855870:intron 55.0%
GTGTCACAGTGCAACACGGT+AGG - chr5_4:50079063-50079082 Msa0855870:intron 55.0%
CCAGACCTGTGCTTAAGCAC+GGG - chr5_4:50080575-50080594 Msa0855870:intron 55.0%
CGGCTGTATCCATTCCCATC+TGG + chr5_4:50080946-50080965 None:intergenic 55.0%
TCTCCTGCTTGCAGAAGCTG+AGG - chr5_4:50081156-50081175 Msa0855870:CDS 55.0%
GAAGCTGATGCAGCTGCTGC+AGG + chr5_4:50078125-50078144 None:intergenic 60.0%
TGCTGCCAGAGCTTCCTTGC+AGG - chr5_4:50080080-50080099 Msa0855870:CDS 60.0%
CCCGTGCTTAAGCACAGGTC+TGG + chr5_4:50080578-50080597 None:intergenic 60.0%
GGCTGCCCGAATAGCTAGTG+AGG - chr5_4:50080889-50080908 Msa0855870:CDS 60.0%
CAGCCTCAGCTTCTGCAAGC+AGG + chr5_4:50081162-50081181 None:intergenic 60.0%
GAAGCTGATGCAGCTGCTGC+AGG + chr5_4:50078125-50078144 None:intergenic 60.0%
ATATGAGGAGGAGCCGGCGA+AGG + chr5_4:50082060-50082079 None:intergenic 60.0%
TGCTGCCAGAGCTTCCTTGC+AGG - chr5_4:50080080-50080099 Msa0855870:CDS 60.0%
CCCGTGCTTAAGCACAGGTC+TGG + chr5_4:50080578-50080597 None:intergenic 60.0%
GGCTGCCCGAATAGCTAGTG+AGG - chr5_4:50080889-50080908 Msa0855870:CDS 60.0%
CAGCCTCAGCTTCTGCAAGC+AGG + chr5_4:50081162-50081181 None:intergenic 60.0%
GCTGATGCAGCTGCTGCAGG+AGG + chr5_4:50078122-50078141 None:intergenic 65.0%
GCCGGCGAAGGAGAAGGAGA+AGG + chr5_4:50078374-50078393 None:intergenic 65.0%
AGAGGAGCCGGCGAAGGAGA+AGG + chr5_4:50078380-50078399 None:intergenic 65.0%
GCTGATGCAGCTGCTGCAGG+AGG + chr5_4:50078122-50078141 None:intergenic 65.0%
GCCGGCGAAGGAGAAGGAGA+AGG + chr5_4:50078374-50078393 None:intergenic 65.0%
GCGGATCGACGACGAGGGTG+AGG + chr5_4:50078184-50078203 None:intergenic 70.0%
GCGGATCGACGACGAGGGTG+AGG + chr5_4:50078184-50078203 None:intergenic 70.0%
GGAGGAGCCGGCGAAGGAGA+AGG + chr5_4:50082054-50082073 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 50077999 50085224 50077999 ID=Msa0855870;Name=Msa0855870
chr5_4 mRNA 50077999 50085224 50077999 ID=Msa0855870-mRNA-1;Parent=Msa0855870;Name=Msa0855870-mRNA-1;_AED=0.12;_eAED=0.17;_QI=0|0|0.09|1|0.2|0.09|11|222|1129
chr5_4 exon 50077999 50078796 50077999 ID=Msa0855870-mRNA-1:exon:15662;Parent=Msa0855870-mRNA-1
chr5_4 exon 50079448 50079663 50079448 ID=Msa0855870-mRNA-1:exon:15661;Parent=Msa0855870-mRNA-1
chr5_4 exon 50079670 50079864 50079670 ID=Msa0855870-mRNA-1:exon:15660;Parent=Msa0855870-mRNA-1
chr5_4 exon 50079910 50080134 50079910 ID=Msa0855870-mRNA-1:exon:15659;Parent=Msa0855870-mRNA-1
chr5_4 exon 50080603 50081228 50080603 ID=Msa0855870-mRNA-1:exon:15658;Parent=Msa0855870-mRNA-1
chr5_4 exon 50081387 50081525 50081387 ID=Msa0855870-mRNA-1:exon:15657;Parent=Msa0855870-mRNA-1
chr5_4 exon 50083122 50083337 50083122 ID=Msa0855870-mRNA-1:exon:15656;Parent=Msa0855870-mRNA-1
chr5_4 exon 50083344 50083538 50083344 ID=Msa0855870-mRNA-1:exon:15655;Parent=Msa0855870-mRNA-1
chr5_4 exon 50083548 50083789 50083548 ID=Msa0855870-mRNA-1:exon:15654;Parent=Msa0855870-mRNA-1
chr5_4 exon 50084273 50084920 50084273 ID=Msa0855870-mRNA-1:exon:15653;Parent=Msa0855870-mRNA-1
chr5_4 exon 50085113 50085224 50085113 ID=Msa0855870-mRNA-1:exon:15652;Parent=Msa0855870-mRNA-1
chr5_4 CDS 50085113 50085224 50085113 ID=Msa0855870-mRNA-1:cds;Parent=Msa0855870-mRNA-1
chr5_4 CDS 50084273 50084920 50084273 ID=Msa0855870-mRNA-1:cds;Parent=Msa0855870-mRNA-1
chr5_4 CDS 50083548 50083789 50083548 ID=Msa0855870-mRNA-1:cds;Parent=Msa0855870-mRNA-1
chr5_4 CDS 50083344 50083538 50083344 ID=Msa0855870-mRNA-1:cds;Parent=Msa0855870-mRNA-1
chr5_4 CDS 50083122 50083337 50083122 ID=Msa0855870-mRNA-1:cds;Parent=Msa0855870-mRNA-1
chr5_4 CDS 50081387 50081525 50081387 ID=Msa0855870-mRNA-1:cds;Parent=Msa0855870-mRNA-1
chr5_4 CDS 50080603 50081228 50080603 ID=Msa0855870-mRNA-1:cds;Parent=Msa0855870-mRNA-1
chr5_4 CDS 50079910 50080134 50079910 ID=Msa0855870-mRNA-1:cds;Parent=Msa0855870-mRNA-1
chr5_4 CDS 50079670 50079864 50079670 ID=Msa0855870-mRNA-1:cds;Parent=Msa0855870-mRNA-1
chr5_4 CDS 50079448 50079663 50079448 ID=Msa0855870-mRNA-1:cds;Parent=Msa0855870-mRNA-1
chr5_4 CDS 50078221 50078796 50078221 ID=Msa0855870-mRNA-1:cds;Parent=Msa0855870-mRNA-1
chr5_4 three_prime_UTR 50077999 50078220 50077999 ID=Msa0855870-mRNA-1:three_prime_utr;Parent=Msa0855870-mRNA-1
Gene Sequence

>Msa0855870

ATGGAAGGTGGCGGAGATATGGATTCACTGTTTGAAGGGATGGTTTTGTTCAACCCTGCTGCCCAAATTGAACAACCAGCGGAGGAGGAGAAGAATCAACAACTCAATCAAAGTTATGGAAGAGATAGAGACACCACCGTTGATGTTGATGTTGATGTTGATGTTGATCTGGATGTGGATCCTTCTCCTTCTCCTTCGCCGGCTCCTCTTCATATTCCCGATTCCCTCGTCGTTAGTACTGTTACCCAACAACCATCTAGTGATAGTACTAGTGAGTCAATCACCACCACCACCACCTCCATTGATGTTGCTCCTGCTGTTAGTGTTAGCGCTACTGAATTGAAAAATGAAAGCAGAGACGCAGCAAACGATGAAGAAGAAACGTTCCAGAAAATAAGGGAGACGATACATGAGAAGCTTAGCCATGCTCGTCAACTGCTCAACTCTGCATCTTCTGCTCGAAAGGATGCCATCAGGAGTAGAAGAAAGGCCTTTCAGAATTCTAATCTTGCTTCTCTTAAATACATGGAACTTGAGAACCAATTAGAACAAGCTTGTGAAGCTGAAGATTTTGAAACCGCTGAAATGGTTAGCCAACACCTTTCTGCCGCTGAGAAGGACAAACAAATCTGCGCCGAATCATTGAGACAAGCTGATGCCTTTATCCATGCTTTAGATTTGAAATTGCAGCATGCCCTCGACTCTCACATAGCTGCTGAGGAAGAATCTGCAACATTACTCCACCATTATGCAACGGTCAACTCTGCCATGAAGAAAGCAACATCATTGCATTCAAAAGAAATGGAACAATGGTTTTCATCATCAGAAGCCTTGGAGGTTAAAAAGATGGAGTTGGAGATTGAATCACATTTTATAAGTGAAGCTCATACAGAACTTAATAATAACATTGAGCTTTCAATAGAGGATGACAAAAAAGAAAAAGAGATCCTTTGTAAAAGAAAGAGTGTGCTAATGGATGAATTGGAAAAACTTCTTGCTTTAAAAGAAAAAGAGATAGCTGACAATGATTCTGATTTAAAAGCTGTAGAGCATAAGATAAATAATGTCGTCTCTGGATTTAAAGAGATTCAGTCAACCATTGAGGTGAAGTATGGCAAATTGCAATCTGTTCTTGCTCAAGTGAAATTAGAGACCGAAACTCTGTCACTGAAGAAGGACAAAATTGATAACCTTCTCGAAGAAAGAATGGGAGCAAAACTTAGGGAATTTGCTAGGGTTTCTGAGGAGGAAGCTAAAGGATACAGGGAAATAATCAAATTAAGAAGAAGTTTGATGTCATCTATACTGAAGTCCGGGGAGGATAAACTGAGACTTACAAACAATGAGGAAAAGCTCTCTGGAGAAGTGAAATTGTTTCAGCAGGAAGTTTCTGCTGCCAGAGCTTCCTTGCAGGTGGCGGAGATATGGATTCACTGTTTGAAGGGATGGTTTTGTTCAACCCTGCTGCCCAAATTGAACAACCAGCGGAGGAGGAGAAGAATCAACAACTCAATCAAAGTGATGCTCCTCCTGCAGCAGCTGCATCAGCTTCGTTATGGAAGAGATAGAGACACCACCGTTGATGTTGATCTGGATGTGGATCCTTCTCCTTCTCCTTCGCCGGCTCCTCCTCATATTCCCGATTCCCTCGTCGTTAGTACTGTTACCCAACAACCATCTAGTGATAGTACTAGTGAGTCAATCACCACCACCACCACCTCCATTGATGTTGCTCCTGCTGTTAGTGTTAGCGCTACTGAATTGAAAAATGAAAGCAGAGACGCAGCAAACGATGAAGAAGAAACGTTCCAGAAAATAAGGGAGACGATACATGAGAAGCTTAGCCATGCTCGTCAACTGCTCAACTCTGCATCTTCTGCTCGAAAGGATGCCATCAGGAGTAGAAGAAAGGCCTTTCAGAATTCTAATCTTGCTTCTCTTAAATACATGGAACTTGAGAACCAATTAGAACAAGCTTGTGAAGCTGAAGATTTTGAAACCGCTGAAATGGTTAGCCAACACCTTTCTGCCGCTGAGAAGGACAAACAAATCTGCGCCGAATCATTGAGACAAGCTGATGCCTTTATCGATGCTTTAGATTTGAAATTGCAGCATGCCCTCGACTCTCACATAGCTGCTGAGGAAGAATCTGCAACATTACTCCACCATTATGCAACGAATGCTGTAAATAATGCAGACTCTGCCATGAAGAAAGCAACATCATTGCATTCAAAAGAAATGGAACAATGGTTTTCATCATCAGAAGCCTTGGAGGTTAAAAAGATGGAGTTGGAGATTGAATCACATTTTATAAGTGAAGCTCATACAGAACTTAATAATAACATTGAGCTTTCAATAGAGGATGACAAAAAAGAAAAAGAGATCCTTTGTAAAAGAAAGAGTAAAGAAAAAGAGATAGTTGACAATGATTCTGATTTAAAAGCTGTAGAGCATAAGATAAATAATGTCGTCTCTGGATTTAAAGAGATTCAGTCAACCATTGAGGTGAAGTATGGCAAATTGCAATCTGTTCTTGCTCAAGTGAAATTAGAGACCGAAACTCTGTCACTGAAGAAGGACAAAATTGATAACCTTCTCGAAGAAAGAATGGGAGCAAAACTTAGGGAATTTGCTAGGGTTTCTGAGGAGGAAGCTAAAGGATACAGGGAAATAATCAAATTAAGAAGAAGTTTGATGTCATCTATACTGAAGTCCGGGGAGGATAAACTGAGACTTACAAACAATGAGGAAAAGCTCTCTGGAGAAGTGAAATTGTTTCAGCAGGAAGTTTCTGCTGCCAGAGCTTCCTTGCAGGAACTATCTTCAAGAAAGTCGAGCATCCAGCAAGACATAGCATCCTTCAAGCAGAGGATTATTTTCATAGATAAGAGAGTTCCAGAACTTGAAGCGGAAAAAAAAGTTGCTACTGCTGCAAGGAATTTCAAGGAGGCTGCCCGAATAGCTAGTGAGGCTAAATCACTGTGTGTTGAGAAAGAGAATATCCAGATGGGAATGGATACAGCCGCTTCGAATCTTGAAAAGCTTGAGGAAGAAATTAAAGGCACCCTTGATAAATTGCAGGAGACTGAGGGAATGATCTTATTGAAGGAGAAAGAGTTAGCAATGGCTAGATATCAAAAGCTACTTTTGACAGCTGCTACTGCTAGAGCTGAAAAAGCAGCTGCCCAAGAAATGGGTGATGTCGAAGAAGCTAATCTCCTGCTTGCAGAAGCTGAGGCTGCAGACTGTGAAGCTGAGAGAATTCGATCAACATACAATTTCAAGGCGGAAGACATTTCAAATTTACGGAAAGATTTGATTTCAATGGACCTTGTATCAATTCTTGATAAAAAGCAATTGGAAAAATTAGTTGTCACTTCATCTATTTAG

Protein sequence

>Msa0855870

MEGGGDMDSLFEGMVLFNPAAQIEQPAEEEKNQQLNQSYGRDRDTTVDVDVDVDVDLDVDPSPSPSPAPLHIPDSLVVSTVTQQPSSDSTSESITTTTTSIDVAPAVSVSATELKNESRDAANDEEETFQKIRETIHEKLSHARQLLNSASSARKDAIRSRRKAFQNSNLASLKYMELENQLEQACEAEDFETAEMVSQHLSAAEKDKQICAESLRQADAFIHALDLKLQHALDSHIAAEEESATLLHHYATVNSAMKKATSLHSKEMEQWFSSSEALEVKKMELEIESHFISEAHTELNNNIELSIEDDKKEKEILCKRKSVLMDELEKLLALKEKEIADNDSDLKAVEHKINNVVSGFKEIQSTIEVKYGKLQSVLAQVKLETETLSLKKDKIDNLLEERMGAKLREFARVSEEEAKGYREIIKLRRSLMSSILKSGEDKLRLTNNEEKLSGEVKLFQQEVSAARASLQVAEIWIHCLKGWFCSTLLPKLNNQRRRRRINNSIKVMLLLQQLHQLRYGRDRDTTVDVDLDVDPSPSPSPAPPHIPDSLVVSTVTQQPSSDSTSESITTTTTSIDVAPAVSVSATELKNESRDAANDEEETFQKIRETIHEKLSHARQLLNSASSARKDAIRSRRKAFQNSNLASLKYMELENQLEQACEAEDFETAEMVSQHLSAAEKDKQICAESLRQADAFIDALDLKLQHALDSHIAAEEESATLLHHYATNAVNNADSAMKKATSLHSKEMEQWFSSSEALEVKKMELEIESHFISEAHTELNNNIELSIEDDKKEKEILCKRKSKEKEIVDNDSDLKAVEHKINNVVSGFKEIQSTIEVKYGKLQSVLAQVKLETETLSLKKDKIDNLLEERMGAKLREFARVSEEEAKGYREIIKLRRSLMSSILKSGEDKLRLTNNEEKLSGEVKLFQQEVSAARASLQELSSRKSSIQQDIASFKQRIIFIDKRVPELEAEKKVATAARNFKEAARIASEAKSLCVEKENIQMGMDTAASNLEKLEEEIKGTLDKLQETEGMILLKEKELAMARYQKLLLTAATARAEKAAAQEMGDVEEANLLLAEAEAADCEAERIRSTYNFKAEDISNLRKDLISMDLVSILDKKQLEKLVVTSSI*