Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0312360 | XP_003593490.1 | 93.796 | 274 | 8 | 2 | 1 | 274 | 1 | 265 | 0.0 | 508 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0106320 | Msa0312360 | 0.800618 | 1.324325e-48 | -8.615850e-47 |
| Msa0134180 | Msa0312360 | 0.800280 | 1.551813e-48 | -8.615850e-47 |
| Msa0191700 | Msa0312360 | 0.957093 | 6.219185e-115 | -8.615850e-47 |
| Msa0233730 | Msa0312360 | 0.857012 | 2.180518e-62 | -8.615850e-47 |
| Msa0312360 | Msa0788770 | 0.815159 | 1.066421e-51 | -8.615850e-47 |
| Msa0312360 | Msa0807820 | 0.806670 | 7.350242e-50 | -8.615850e-47 |
| Msa0312360 | Msa0856050 | 0.801837 | 7.458981e-49 | -8.615850e-47 |
| Msa0312360 | Msa1174530 | 0.822378 | 2.446670e-53 | -8.615850e-47 |
| Msa0312360 | Msa1235250 | 0.817426 | 3.317456e-52 | -8.615850e-47 |
| Msa0312360 | Msa1404170 | 0.970201 | 2.934550e-131 | -8.615850e-47 |
| Msa0312360 | Msa1443930 | 0.821655 | 3.597522e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0312360 | MtrunA17_Chr2g0281521 | 93.796 | 274 | 8 | 2 | 1 | 274 | 1 | 265 | 0.0 | 508 |
| Msa0312360 | MtrunA17_Chr4g0047911 | 43.103 | 290 | 112 | 14 | 1 | 274 | 1 | 253 | 9.17e-44 | 149 |
| Msa0312360 | MtrunA17_Chr2g0323991 | 30.915 | 317 | 138 | 13 | 1 | 274 | 1 | 279 | 5.43e-13 | 67.4 |
| Msa0312360 | MtrunA17_Chr4g0022421 | 31.563 | 339 | 144 | 14 | 1 | 274 | 1 | 316 | 2.55e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0312360 | AT1G11125.1 | 34.539 | 304 | 130 | 13 | 1 | 274 | 1 | 265 | 7.85e-21 | 89.4 |
| Msa0312360 | AT1G61170.1 | 38.298 | 188 | 86 | 5 | 92 | 274 | 89 | 251 | 6.67e-16 | 75.9 |
Find 72 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTTGGTTTCTTCCATT+TGG | 0.164688 | 2_4:-7427249 | None:intergenic |
| GAAATTTGATAGAGAGAATA+AGG | 0.211062 | 2_4:+7427310 | Msa0312360:CDS |
| TCATTTGGTTTCTTCCATTT+GGG | 0.279406 | 2_4:-7427248 | None:intergenic |
| ATTCAACAGTGGAGAGTAAA+TGG | 0.305564 | 2_4:+7427816 | Msa0312360:CDS |
| AGAGACGCCGGCGAAGTTTC+CGG | 0.307275 | 2_4:+7427647 | Msa0312360:CDS |
| GGAGAACGGTGGCCGGAAAA+TGG | 0.313036 | 2_4:+7427790 | Msa0312360:CDS |
| GGAAAATCCACTTGTGTCAT+TGG | 0.355990 | 2_4:+7427865 | Msa0312360:CDS |
| GATCTCATCAACTTTATAGA+AGG | 0.365710 | 2_4:-7427342 | None:intergenic |
| AAGGCTGTTCTTCCCTTTCC+CGG | 0.367623 | 2_4:-7427764 | None:intergenic |
| TTAACTGTTTCTTCTTCAAC+AGG | 0.384629 | 2_4:-7427206 | None:intergenic |
| TTCTTCCCTTTCCCGGCGAT+TGG | 0.384873 | 2_4:-7427757 | None:intergenic |
| TCATATCTAAACCTTTCATT+TGG | 0.387597 | 2_4:-7427263 | None:intergenic |
| AAAGGGAAGAACAGCCTTGC+CGG | 0.391214 | 2_4:+7427769 | Msa0312360:CDS |
| CTCTCTTCTCTCACCGGAAA+AGG | 0.407732 | 2_4:-7427495 | None:intergenic |
| TGTGAAATGCTAGATCTTGA+TGG | 0.410155 | 2_4:-7427146 | None:intergenic |
| TGTTCAGAGGAGAGATCAAA+TGG | 0.422598 | 2_4:+7427592 | Msa0312360:CDS |
| AAGTTTCCGGCCGACGATCT+AGG | 0.423459 | 2_4:+7427660 | Msa0312360:CDS |
| GACTCATCATTAGCTGTAGA+TGG | 0.427911 | 2_4:-7427839 | None:intergenic |
| TCAAATTTCTCAAAACACTT+TGG | 0.432970 | 2_4:-7427296 | None:intergenic |
| GACTGCTCCGACCTTCTTGC+CGG | 0.434939 | 2_4:-7427536 | None:intergenic |
| AGGAAGAAGAATCTTGCAAA+AGG | 0.438874 | 2_4:+7427435 | Msa0312360:CDS |
| AAACTTCGCCGGCGTCTCTC+CGG | 0.444786 | 2_4:-7427643 | None:intergenic |
| AGGAGAGATCAAATGGGAAA+TGG | 0.445282 | 2_4:+7427599 | Msa0312360:CDS |
| AACAAACCAATCGCCGGGAA+AGG | 0.459022 | 2_4:+7427751 | Msa0312360:CDS |
| CTCCGGCGAAAAGGAATGTT+GGG | 0.469114 | 2_4:+7427558 | Msa0312360:CDS |
| CCGGCCACCGTTCTCCGGCA+AGG | 0.474190 | 2_4:-7427783 | None:intergenic |
| ACAAACCAATCGCCGGGAAA+GGG | 0.476850 | 2_4:+7427752 | Msa0312360:CDS |
| AAGAAGGTCGGAGCAGTCTC+CGG | 0.487899 | 2_4:+7427541 | Msa0312360:CDS |
| CGGAGCAGTCTCCGGCGAAA+AGG | 0.493736 | 2_4:+7427549 | Msa0312360:CDS |
| CTTGCCGGCGACTTTCTCGC+CGG | 0.497162 | 2_4:-7427521 | None:intergenic |
| TACAGCTAATGATGAGTCAC+TGG | 0.507954 | 2_4:+7427844 | Msa0312360:CDS |
| TGTTGTCAGAAACACCCAAA+TGG | 0.517393 | 2_4:+7427234 | Msa0312360:CDS |
| TCTCCGGCGAAAAGGAATGT+TGG | 0.528330 | 2_4:+7427557 | Msa0312360:CDS |
| GAATGAAGAATCAGCCTCAC+CGG | 0.529905 | 2_4:+7427624 | Msa0312360:CDS |
| TGTTGAAGAAGAAACAGTTA+AGG | 0.531213 | 2_4:+7427208 | Msa0312360:CDS |
| CCTTGCCGGAGAACGGTGGC+CGG | 0.531831 | 2_4:+7427783 | Msa0312360:CDS |
| CGGTGAGAGAAGAGAGTCTC+CGG | 0.532502 | 2_4:+7427502 | Msa0312360:CDS |
| CAGCCTCACCGGAGAGACGC+CGG | 0.541053 | 2_4:+7427635 | Msa0312360:CDS |
| TGAGATCTCTGAAGTTTCTG+AGG | 0.544711 | 2_4:+7427358 | Msa0312360:CDS |
| AGGAAAACAAACCAATCGCC+GGG | 0.548205 | 2_4:+7427746 | Msa0312360:CDS |
| AGAACAGCCTTGCCGGAGAA+CGG | 0.548840 | 2_4:+7427776 | Msa0312360:CDS |
| TCGTCGGCCGGAAACTTCGC+CGG | 0.554308 | 2_4:-7427654 | None:intergenic |
| CGAGAAAGTCGCCGGCAAGA+AGG | 0.555971 | 2_4:+7427525 | Msa0312360:CDS |
| GGAAGAAGAATCTTGCAAAA+GGG | 0.556806 | 2_4:+7427436 | Msa0312360:CDS |
| TTTCATTGATAAGAGAGAAG+AGG | 0.558734 | 2_4:+7427415 | Msa0312360:CDS |
| GTCTCCGGCGAGAAAGTCGC+CGG | 0.564723 | 2_4:+7427517 | Msa0312360:CDS |
| AAGGAAAACAAACCAATCGC+CGG | 0.566599 | 2_4:+7427745 | Msa0312360:CDS |
| AGAGATCAAATGGGAAATGG+AGG | 0.567817 | 2_4:+7427602 | Msa0312360:CDS |
| AATGGAAGAAACCAAATGAA+AGG | 0.569819 | 2_4:+7427252 | Msa0312360:CDS |
| CCATTGTCAGTACGAGTAGC+CGG | 0.570807 | 2_4:-7427686 | None:intergenic |
| TCTAGCATTTCACAAGTGAA+AGG | 0.573120 | 2_4:+7427155 | Msa0312360:CDS |
| TGGTTCAACGAGATCTGTCG+TGG | 0.573822 | 2_4:+7427706 | Msa0312360:CDS |
| GTTCAGAGGAGAGATCAAAT+GGG | 0.576457 | 2_4:+7427593 | Msa0312360:CDS |
| CGGAGACTCTCTTCTCTCAC+CGG | 0.579715 | 2_4:-7427501 | None:intergenic |
| CAACGAGATCTGTCGTGGGT+CGG | 0.580336 | 2_4:+7427711 | Msa0312360:CDS |
| CGGCCGACGATCTAGGTCGC+CGG | 0.588380 | 2_4:+7427667 | Msa0312360:CDS |
| AAGCATTCCAATGACACAAG+TGG | 0.592757 | 2_4:-7427872 | None:intergenic |
| CCGGCTACTCGTACTGACAA+TGG | 0.600535 | 2_4:+7427686 | Msa0312360:CDS |
| GAATCTTGCAAAAGGGTCAA+CGG | 0.602033 | 2_4:+7427443 | Msa0312360:CDS |
| AAAGTCGCCGGCAAGAAGGT+CGG | 0.608055 | 2_4:+7427529 | Msa0312360:CDS |
| GGCGAAAAGGAATGTTGGGT+CGG | 0.609373 | 2_4:+7427562 | Msa0312360:CDS |
| CGGCGACCTAGATCGTCGGC+CGG | 0.611451 | 2_4:-7427666 | None:intergenic |
| TCGCCGGCGTCTCTCCGGTG+AGG | 0.626235 | 2_4:-7427638 | None:intergenic |
| TCTTCTTCAACAGGAACACA+AGG | 0.632166 | 2_4:-7427197 | None:intergenic |
| TGGGTCGGAGCTTATCTGCA+AGG | 0.638945 | 2_4:+7427726 | Msa0312360:CDS |
| GGTCGGCGAGGATTGTTCAG+AGG | 0.639198 | 2_4:+7427579 | Msa0312360:CDS |
| TAGCCGGCGACCTAGATCGT+CGG | 0.649338 | 2_4:-7427670 | None:intergenic |
| ACAGCCTTGCCGGAGAACGG+TGG | 0.649383 | 2_4:+7427779 | Msa0312360:CDS |
| AAAGGAATGTTGGGTCGGCG+AGG | 0.657766 | 2_4:+7427567 | Msa0312360:CDS |
| TCTTCAACAGGAACACAAGG+TGG | 0.671847 | 2_4:-7427194 | None:intergenic |
| GAAAATGGAAAATTCAACAG+TGG | 0.675684 | 2_4:+7427805 | Msa0312360:CDS |
| GGTTCAACGAGATCTGTCGT+GGG | 0.679453 | 2_4:+7427707 | Msa0312360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAAATCATTGTGTTTTGT+TGG | - | chr2_4:7427125-7427144 | None:intergenic | 25.0% |
| ! | TCATATCTAAACCTTTCATT+TGG | - | chr2_4:7427266-7427285 | None:intergenic | 25.0% |
| ! | TCAAATTTCTCAAAACACTT+TGG | - | chr2_4:7427299-7427318 | None:intergenic | 25.0% |
| ! | GAAATTTGATAGAGAGAATA+AGG | + | chr2_4:7427310-7427329 | Msa0312360:CDS | 25.0% |
| !! | TGAAAATCATTGTGTTTTGT+TGG | - | chr2_4:7427125-7427144 | None:intergenic | 25.0% |
| ! | TCATATCTAAACCTTTCATT+TGG | - | chr2_4:7427266-7427285 | None:intergenic | 25.0% |
| ! | TCAAATTTCTCAAAACACTT+TGG | - | chr2_4:7427299-7427318 | None:intergenic | 25.0% |
| ! | GAAATTTGATAGAGAGAATA+AGG | + | chr2_4:7427310-7427329 | Msa0312360:CDS | 25.0% |
| !! | AAATCATTGTGTTTTGTTGG+TGG | - | chr2_4:7427122-7427141 | None:intergenic | 30.0% |
| ! | TTAACTGTTTCTTCTTCAAC+AGG | - | chr2_4:7427209-7427228 | None:intergenic | 30.0% |
| TGTTGAAGAAGAAACAGTTA+AGG | + | chr2_4:7427208-7427227 | Msa0312360:CDS | 30.0% | |
| ! | TCATTTGGTTTCTTCCATTT+GGG | - | chr2_4:7427251-7427270 | None:intergenic | 30.0% |
| ! | TTCATTTGGTTTCTTCCATT+TGG | - | chr2_4:7427252-7427271 | None:intergenic | 30.0% |
| AATGGAAGAAACCAAATGAA+AGG | + | chr2_4:7427252-7427271 | Msa0312360:CDS | 30.0% | |
| GATCTCATCAACTTTATAGA+AGG | - | chr2_4:7427345-7427364 | None:intergenic | 30.0% | |
| TTTCATTGATAAGAGAGAAG+AGG | + | chr2_4:7427415-7427434 | Msa0312360:CDS | 30.0% | |
| ! | CTGTTGAATTTTCCATTTTC+CGG | - | chr2_4:7427805-7427824 | None:intergenic | 30.0% |
| GAAAATGGAAAATTCAACAG+TGG | + | chr2_4:7427805-7427824 | Msa0312360:CDS | 30.0% | |
| !! | AAATCATTGTGTTTTGTTGG+TGG | - | chr2_4:7427122-7427141 | None:intergenic | 30.0% |
| ! | TTAACTGTTTCTTCTTCAAC+AGG | - | chr2_4:7427209-7427228 | None:intergenic | 30.0% |
| TGTTGAAGAAGAAACAGTTA+AGG | + | chr2_4:7427208-7427227 | Msa0312360:CDS | 30.0% | |
| ! | TCATTTGGTTTCTTCCATTT+GGG | - | chr2_4:7427251-7427270 | None:intergenic | 30.0% |
| ! | TTCATTTGGTTTCTTCCATT+TGG | - | chr2_4:7427252-7427271 | None:intergenic | 30.0% |
| AATGGAAGAAACCAAATGAA+AGG | + | chr2_4:7427252-7427271 | Msa0312360:CDS | 30.0% | |
| GATCTCATCAACTTTATAGA+AGG | - | chr2_4:7427345-7427364 | None:intergenic | 30.0% | |
| TTTCATTGATAAGAGAGAAG+AGG | + | chr2_4:7427415-7427434 | Msa0312360:CDS | 30.0% | |
| ! | CTGTTGAATTTTCCATTTTC+CGG | - | chr2_4:7427805-7427824 | None:intergenic | 30.0% |
| GAAAATGGAAAATTCAACAG+TGG | + | chr2_4:7427805-7427824 | Msa0312360:CDS | 30.0% | |
| TGTGAAATGCTAGATCTTGA+TGG | - | chr2_4:7427149-7427168 | None:intergenic | 35.0% | |
| TCTAGCATTTCACAAGTGAA+AGG | + | chr2_4:7427155-7427174 | Msa0312360:CDS | 35.0% | |
| AGGAAGAAGAATCTTGCAAA+AGG | + | chr2_4:7427435-7427454 | Msa0312360:CDS | 35.0% | |
| GGAAGAAGAATCTTGCAAAA+GGG | + | chr2_4:7427436-7427455 | Msa0312360:CDS | 35.0% | |
| ATTCAACAGTGGAGAGTAAA+TGG | + | chr2_4:7427816-7427835 | Msa0312360:CDS | 35.0% | |
| TGTGAAATGCTAGATCTTGA+TGG | - | chr2_4:7427149-7427168 | None:intergenic | 35.0% | |
| TCTAGCATTTCACAAGTGAA+AGG | + | chr2_4:7427155-7427174 | Msa0312360:CDS | 35.0% | |
| AGGAAGAAGAATCTTGCAAA+AGG | + | chr2_4:7427435-7427454 | Msa0312360:CDS | 35.0% | |
| GGAAGAAGAATCTTGCAAAA+GGG | + | chr2_4:7427436-7427455 | Msa0312360:CDS | 35.0% | |
| ATTCAACAGTGGAGAGTAAA+TGG | + | chr2_4:7427816-7427835 | Msa0312360:CDS | 35.0% | |
| TCTTCTTCAACAGGAACACA+AGG | - | chr2_4:7427200-7427219 | None:intergenic | 40.0% | |
| TGTTGTCAGAAACACCCAAA+TGG | + | chr2_4:7427234-7427253 | Msa0312360:CDS | 40.0% | |
| !! | TGAGATCTCTGAAGTTTCTG+AGG | + | chr2_4:7427358-7427377 | Msa0312360:CDS | 40.0% |
| GAATCTTGCAAAAGGGTCAA+CGG | + | chr2_4:7427443-7427462 | Msa0312360:CDS | 40.0% | |
| !! | ACCATTTTTGCGCATTTTCG+CGG | - | chr2_4:7427474-7427493 | None:intergenic | 40.0% |
| ! | CGCAAAAATGGTTCCTTTTC+CGG | + | chr2_4:7427482-7427501 | Msa0312360:CDS | 40.0% |
| TGTTCAGAGGAGAGATCAAA+TGG | + | chr2_4:7427592-7427611 | Msa0312360:CDS | 40.0% | |
| GTTCAGAGGAGAGATCAAAT+GGG | + | chr2_4:7427593-7427612 | Msa0312360:CDS | 40.0% | |
| AGGAGAGATCAAATGGGAAA+TGG | + | chr2_4:7427599-7427618 | Msa0312360:CDS | 40.0% | |
| AGAGATCAAATGGGAAATGG+AGG | + | chr2_4:7427602-7427621 | Msa0312360:CDS | 40.0% | |
| AAGGAAAACAAACCAATCGC+CGG | + | chr2_4:7427745-7427764 | Msa0312360:CDS | 40.0% | |
| GACTCATCATTAGCTGTAGA+TGG | - | chr2_4:7427842-7427861 | None:intergenic | 40.0% | |
| TACAGCTAATGATGAGTCAC+TGG | + | chr2_4:7427844-7427863 | Msa0312360:CDS | 40.0% | |
| GGAAAATCCACTTGTGTCAT+TGG | + | chr2_4:7427865-7427884 | Msa0312360:CDS | 40.0% | |
| AAGCATTCCAATGACACAAG+TGG | - | chr2_4:7427875-7427894 | None:intergenic | 40.0% | |
| TCTTCTTCAACAGGAACACA+AGG | - | chr2_4:7427200-7427219 | None:intergenic | 40.0% | |
| TGTTGTCAGAAACACCCAAA+TGG | + | chr2_4:7427234-7427253 | Msa0312360:CDS | 40.0% | |
| !! | TGAGATCTCTGAAGTTTCTG+AGG | + | chr2_4:7427358-7427377 | Msa0312360:CDS | 40.0% |
| GAATCTTGCAAAAGGGTCAA+CGG | + | chr2_4:7427443-7427462 | Msa0312360:CDS | 40.0% | |
| !! | ACCATTTTTGCGCATTTTCG+CGG | - | chr2_4:7427474-7427493 | None:intergenic | 40.0% |
| ! | CGCAAAAATGGTTCCTTTTC+CGG | + | chr2_4:7427482-7427501 | Msa0312360:CDS | 40.0% |
| TGTTCAGAGGAGAGATCAAA+TGG | + | chr2_4:7427592-7427611 | Msa0312360:CDS | 40.0% | |
| GTTCAGAGGAGAGATCAAAT+GGG | + | chr2_4:7427593-7427612 | Msa0312360:CDS | 40.0% | |
| AGGAGAGATCAAATGGGAAA+TGG | + | chr2_4:7427599-7427618 | Msa0312360:CDS | 40.0% | |
| AGAGATCAAATGGGAAATGG+AGG | + | chr2_4:7427602-7427621 | Msa0312360:CDS | 40.0% | |
| AAGGAAAACAAACCAATCGC+CGG | + | chr2_4:7427745-7427764 | Msa0312360:CDS | 40.0% | |
| GACTCATCATTAGCTGTAGA+TGG | - | chr2_4:7427842-7427861 | None:intergenic | 40.0% | |
| TACAGCTAATGATGAGTCAC+TGG | + | chr2_4:7427844-7427863 | Msa0312360:CDS | 40.0% | |
| GGAAAATCCACTTGTGTCAT+TGG | + | chr2_4:7427865-7427884 | Msa0312360:CDS | 40.0% | |
| AAGCATTCCAATGACACAAG+TGG | - | chr2_4:7427875-7427894 | None:intergenic | 40.0% | |
| TCTTCAACAGGAACACAAGG+TGG | - | chr2_4:7427197-7427216 | None:intergenic | 45.0% | |
| !! | CCATTTTTGCGCATTTTCGC+GGG | - | chr2_4:7427473-7427492 | None:intergenic | 45.0% |
| GAATGAAGAATCAGCCTCAC+CGG | + | chr2_4:7427624-7427643 | Msa0312360:CDS | 45.0% | |
| AGGAAAACAAACCAATCGCC+GGG | + | chr2_4:7427746-7427765 | Msa0312360:CDS | 45.0% | |
| TCTTCAACAGGAACACAAGG+TGG | - | chr2_4:7427197-7427216 | None:intergenic | 45.0% | |
| !! | CCATTTTTGCGCATTTTCGC+GGG | - | chr2_4:7427473-7427492 | None:intergenic | 45.0% |
| GAATGAAGAATCAGCCTCAC+CGG | + | chr2_4:7427624-7427643 | Msa0312360:CDS | 45.0% | |
| AGGAAAACAAACCAATCGCC+GGG | + | chr2_4:7427746-7427765 | Msa0312360:CDS | 45.0% | |
| CCCGCGAAAATGCGCAAAAA+TGG | + | chr2_4:7427470-7427489 | Msa0312360:CDS | 50.0% | |
| CTCTCTTCTCTCACCGGAAA+AGG | - | chr2_4:7427498-7427517 | None:intergenic | 50.0% | |
| TCTCCGGCGAAAAGGAATGT+TGG | + | chr2_4:7427557-7427576 | Msa0312360:CDS | 50.0% | |
| CTCCGGCGAAAAGGAATGTT+GGG | + | chr2_4:7427558-7427577 | Msa0312360:CDS | 50.0% | |
| ! | GACCCAACATTCCTTTTCGC+CGG | - | chr2_4:7427563-7427582 | None:intergenic | 50.0% |
| GGCGAAAAGGAATGTTGGGT+CGG | + | chr2_4:7427562-7427581 | Msa0312360:CDS | 50.0% | |
| CCATTGTCAGTACGAGTAGC+CGG | - | chr2_4:7427689-7427708 | None:intergenic | 50.0% | |
| TGGTTCAACGAGATCTGTCG+TGG | + | chr2_4:7427706-7427725 | Msa0312360:CDS | 50.0% | |
| GGTTCAACGAGATCTGTCGT+GGG | + | chr2_4:7427707-7427726 | Msa0312360:CDS | 50.0% | |
| AACAAACCAATCGCCGGGAA+AGG | + | chr2_4:7427751-7427770 | Msa0312360:CDS | 50.0% | |
| ACAAACCAATCGCCGGGAAA+GGG | + | chr2_4:7427752-7427771 | Msa0312360:CDS | 50.0% | |
| AAGGCTGTTCTTCCCTTTCC+CGG | - | chr2_4:7427767-7427786 | None:intergenic | 50.0% | |
| AAAGGGAAGAACAGCCTTGC+CGG | + | chr2_4:7427769-7427788 | Msa0312360:CDS | 50.0% | |
| CCCGCGAAAATGCGCAAAAA+TGG | + | chr2_4:7427470-7427489 | Msa0312360:CDS | 50.0% | |
| CTCTCTTCTCTCACCGGAAA+AGG | - | chr2_4:7427498-7427517 | None:intergenic | 50.0% | |
| TCTCCGGCGAAAAGGAATGT+TGG | + | chr2_4:7427557-7427576 | Msa0312360:CDS | 50.0% | |
| CTCCGGCGAAAAGGAATGTT+GGG | + | chr2_4:7427558-7427577 | Msa0312360:CDS | 50.0% | |
| ! | GACCCAACATTCCTTTTCGC+CGG | - | chr2_4:7427563-7427582 | None:intergenic | 50.0% |
| GGCGAAAAGGAATGTTGGGT+CGG | + | chr2_4:7427562-7427581 | Msa0312360:CDS | 50.0% | |
| CCATTGTCAGTACGAGTAGC+CGG | - | chr2_4:7427689-7427708 | None:intergenic | 50.0% | |
| TGGTTCAACGAGATCTGTCG+TGG | + | chr2_4:7427706-7427725 | Msa0312360:CDS | 50.0% | |
| GGTTCAACGAGATCTGTCGT+GGG | + | chr2_4:7427707-7427726 | Msa0312360:CDS | 50.0% | |
| AACAAACCAATCGCCGGGAA+AGG | + | chr2_4:7427751-7427770 | Msa0312360:CDS | 50.0% | |
| ACAAACCAATCGCCGGGAAA+GGG | + | chr2_4:7427752-7427771 | Msa0312360:CDS | 50.0% | |
| AAGGCTGTTCTTCCCTTTCC+CGG | - | chr2_4:7427767-7427786 | None:intergenic | 50.0% | |
| AAAGGGAAGAACAGCCTTGC+CGG | + | chr2_4:7427769-7427788 | Msa0312360:CDS | 50.0% | |
| CGGAGACTCTCTTCTCTCAC+CGG | - | chr2_4:7427504-7427523 | None:intergenic | 55.0% | |
| CGGTGAGAGAAGAGAGTCTC+CGG | + | chr2_4:7427502-7427521 | Msa0312360:CDS | 55.0% | |
| AAAGTCGCCGGCAAGAAGGT+CGG | + | chr2_4:7427529-7427548 | Msa0312360:CDS | 55.0% | |
| AAGAAGGTCGGAGCAGTCTC+CGG | + | chr2_4:7427541-7427560 | Msa0312360:CDS | 55.0% | |
| AAAGGAATGTTGGGTCGGCG+AGG | + | chr2_4:7427567-7427586 | Msa0312360:CDS | 55.0% | |
| AAGTTTCCGGCCGACGATCT+AGG | + | chr2_4:7427660-7427679 | Msa0312360:CDS | 55.0% | |
| ! | CCGGCTACTCGTACTGACAA+TGG | + | chr2_4:7427686-7427705 | Msa0312360:CDS | 55.0% |
| CAACGAGATCTGTCGTGGGT+CGG | + | chr2_4:7427711-7427730 | Msa0312360:CDS | 55.0% | |
| TGGGTCGGAGCTTATCTGCA+AGG | + | chr2_4:7427726-7427745 | Msa0312360:CDS | 55.0% | |
| TTCTTCCCTTTCCCGGCGAT+TGG | - | chr2_4:7427760-7427779 | None:intergenic | 55.0% | |
| AGAACAGCCTTGCCGGAGAA+CGG | + | chr2_4:7427776-7427795 | Msa0312360:CDS | 55.0% | |
| ! | ATTTTCCGGCCACCGTTCTC+CGG | - | chr2_4:7427791-7427810 | None:intergenic | 55.0% |
| CGGAGACTCTCTTCTCTCAC+CGG | - | chr2_4:7427504-7427523 | None:intergenic | 55.0% | |
| CGGTGAGAGAAGAGAGTCTC+CGG | + | chr2_4:7427502-7427521 | Msa0312360:CDS | 55.0% | |
| AAAGTCGCCGGCAAGAAGGT+CGG | + | chr2_4:7427529-7427548 | Msa0312360:CDS | 55.0% | |
| AAGAAGGTCGGAGCAGTCTC+CGG | + | chr2_4:7427541-7427560 | Msa0312360:CDS | 55.0% | |
| AAAGGAATGTTGGGTCGGCG+AGG | + | chr2_4:7427567-7427586 | Msa0312360:CDS | 55.0% | |
| AAGTTTCCGGCCGACGATCT+AGG | + | chr2_4:7427660-7427679 | Msa0312360:CDS | 55.0% | |
| ! | CCGGCTACTCGTACTGACAA+TGG | + | chr2_4:7427686-7427705 | Msa0312360:CDS | 55.0% |
| CAACGAGATCTGTCGTGGGT+CGG | + | chr2_4:7427711-7427730 | Msa0312360:CDS | 55.0% | |
| TGGGTCGGAGCTTATCTGCA+AGG | + | chr2_4:7427726-7427745 | Msa0312360:CDS | 55.0% | |
| TTCTTCCCTTTCCCGGCGAT+TGG | - | chr2_4:7427760-7427779 | None:intergenic | 55.0% | |
| AGAACAGCCTTGCCGGAGAA+CGG | + | chr2_4:7427776-7427795 | Msa0312360:CDS | 55.0% | |
| ! | ATTTTCCGGCCACCGTTCTC+CGG | - | chr2_4:7427791-7427810 | None:intergenic | 55.0% |
| CGAGAAAGTCGCCGGCAAGA+AGG | + | chr2_4:7427525-7427544 | Msa0312360:CDS | 60.0% | |
| GACTGCTCCGACCTTCTTGC+CGG | - | chr2_4:7427539-7427558 | None:intergenic | 60.0% | |
| GGTCGGCGAGGATTGTTCAG+AGG | + | chr2_4:7427579-7427598 | Msa0312360:CDS | 60.0% | |
| AAACTTCGCCGGCGTCTCTC+CGG | - | chr2_4:7427646-7427665 | None:intergenic | 60.0% | |
| AGAGACGCCGGCGAAGTTTC+CGG | + | chr2_4:7427647-7427666 | Msa0312360:CDS | 60.0% | |
| TAGCCGGCGACCTAGATCGT+CGG | - | chr2_4:7427673-7427692 | None:intergenic | 60.0% | |
| GGAGAACGGTGGCCGGAAAA+TGG | + | chr2_4:7427790-7427809 | Msa0312360:CDS | 60.0% | |
| CGAGAAAGTCGCCGGCAAGA+AGG | + | chr2_4:7427525-7427544 | Msa0312360:CDS | 60.0% | |
| GACTGCTCCGACCTTCTTGC+CGG | - | chr2_4:7427539-7427558 | None:intergenic | 60.0% | |
| GGTCGGCGAGGATTGTTCAG+AGG | + | chr2_4:7427579-7427598 | Msa0312360:CDS | 60.0% | |
| AAACTTCGCCGGCGTCTCTC+CGG | - | chr2_4:7427646-7427665 | None:intergenic | 60.0% | |
| AGAGACGCCGGCGAAGTTTC+CGG | + | chr2_4:7427647-7427666 | Msa0312360:CDS | 60.0% | |
| TAGCCGGCGACCTAGATCGT+CGG | - | chr2_4:7427673-7427692 | None:intergenic | 60.0% | |
| GGAGAACGGTGGCCGGAAAA+TGG | + | chr2_4:7427790-7427809 | Msa0312360:CDS | 60.0% | |
| GTCTCCGGCGAGAAAGTCGC+CGG | + | chr2_4:7427517-7427536 | Msa0312360:CDS | 65.0% | |
| CTTGCCGGCGACTTTCTCGC+CGG | - | chr2_4:7427524-7427543 | None:intergenic | 65.0% | |
| CGGAGCAGTCTCCGGCGAAA+AGG | + | chr2_4:7427549-7427568 | Msa0312360:CDS | 65.0% | |
| TCGTCGGCCGGAAACTTCGC+CGG | - | chr2_4:7427657-7427676 | None:intergenic | 65.0% | |
| ACAGCCTTGCCGGAGAACGG+TGG | + | chr2_4:7427779-7427798 | Msa0312360:CDS | 65.0% | |
| GTCTCCGGCGAGAAAGTCGC+CGG | + | chr2_4:7427517-7427536 | Msa0312360:CDS | 65.0% | |
| CTTGCCGGCGACTTTCTCGC+CGG | - | chr2_4:7427524-7427543 | None:intergenic | 65.0% | |
| CGGAGCAGTCTCCGGCGAAA+AGG | + | chr2_4:7427549-7427568 | Msa0312360:CDS | 65.0% | |
| TCGTCGGCCGGAAACTTCGC+CGG | - | chr2_4:7427657-7427676 | None:intergenic | 65.0% | |
| ACAGCCTTGCCGGAGAACGG+TGG | + | chr2_4:7427779-7427798 | Msa0312360:CDS | 65.0% | |
| CAGCCTCACCGGAGAGACGC+CGG | + | chr2_4:7427635-7427654 | Msa0312360:CDS | 70.0% | |
| CGGCGACCTAGATCGTCGGC+CGG | - | chr2_4:7427669-7427688 | None:intergenic | 70.0% | |
| CGGCCGACGATCTAGGTCGC+CGG | + | chr2_4:7427667-7427686 | Msa0312360:CDS | 70.0% | |
| CCTTGCCGGAGAACGGTGGC+CGG | + | chr2_4:7427783-7427802 | Msa0312360:CDS | 70.0% | |
| CAGCCTCACCGGAGAGACGC+CGG | + | chr2_4:7427635-7427654 | Msa0312360:CDS | 70.0% | |
| CGGCGACCTAGATCGTCGGC+CGG | - | chr2_4:7427669-7427688 | None:intergenic | 70.0% | |
| CGGCCGACGATCTAGGTCGC+CGG | + | chr2_4:7427667-7427686 | Msa0312360:CDS | 70.0% | |
| CCTTGCCGGAGAACGGTGGC+CGG | + | chr2_4:7427783-7427802 | Msa0312360:CDS | 70.0% | |
| TCGCCGGCGTCTCTCCGGTG+AGG | - | chr2_4:7427641-7427660 | None:intergenic | 75.0% | |
| CCGGCCACCGTTCTCCGGCA+AGG | - | chr2_4:7427786-7427805 | None:intergenic | 75.0% | |
| TCGCCGGCGTCTCTCCGGTG+AGG | - | chr2_4:7427641-7427660 | None:intergenic | 75.0% | |
| CCGGCCACCGTTCTCCGGCA+AGG | - | chr2_4:7427786-7427805 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 7427083 | 7427907 | 7427083 | ID=Msa0312360;Name=Msa0312360 |
| chr2_4 | mRNA | 7427083 | 7427907 | 7427083 | ID=Msa0312360-mRNA-1;Parent=Msa0312360;Name=Msa0312360-mRNA-1;_AED=0.18;_eAED=0.21;_QI=0|-1|0|1|-1|1|1|0|274 |
| chr2_4 | exon | 7427083 | 7427907 | 7427083 | ID=Msa0312360-mRNA-1:exon:2878;Parent=Msa0312360-mRNA-1 |
| chr2_4 | CDS | 7427083 | 7427907 | 7427083 | ID=Msa0312360-mRNA-1:cds;Parent=Msa0312360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
