Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807820 | XP_003614405.1 | 96.429 | 140 | 5 | 0 | 2 | 141 | 4 | 143 | 8.92e-89 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807820 | sp|Q9C540|ACFR4_ARATH | 59.859 | 142 | 46 | 1 | 1 | 142 | 1 | 131 | 6.00e-50 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807820 | G7JX23 | 96.429 | 140 | 5 | 0 | 2 | 141 | 4 | 143 | 4.26e-89 | 271 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027820 | Msa0807820 | 0.839101 | 1.938216e-57 | -8.615850e-47 |
| Msa0032920 | Msa0807820 | -0.801004 | 1.104927e-48 | -8.615850e-47 |
| Msa0035120 | Msa0807820 | 0.808037 | 3.770580e-50 | -8.615850e-47 |
| Msa0061340 | Msa0807820 | 0.817765 | 2.782111e-52 | -8.615850e-47 |
| Msa0063890 | Msa0807820 | 0.814109 | 1.821064e-51 | -8.615850e-47 |
| Msa0081520 | Msa0807820 | 0.836952 | 6.921198e-57 | -8.615850e-47 |
| Msa0093850 | Msa0807820 | 0.841448 | 4.722003e-58 | -8.615850e-47 |
| Msa0101440 | Msa0807820 | 0.813428 | 2.572730e-51 | -8.615850e-47 |
| Msa0614000 | Msa0807820 | 0.821696 | 3.519131e-53 | -8.615850e-47 |
| Msa0614930 | Msa0807820 | 0.803081 | 4.133155e-49 | -8.615850e-47 |
| Msa0626450 | Msa0807820 | 0.856652 | 2.783640e-62 | -8.615850e-47 |
| Msa0626490 | Msa0807820 | 0.856272 | 3.599955e-62 | -8.615850e-47 |
| Msa0637560 | Msa0807820 | 0.811868 | 5.644309e-51 | -8.615850e-47 |
| Msa0637580 | Msa0807820 | 0.806254 | 8.995722e-50 | -8.615850e-47 |
| Msa0638480 | Msa0807820 | 0.833382 | 5.507925e-56 | -8.615850e-47 |
| Msa0651550 | Msa0807820 | 0.814701 | 1.347574e-51 | -8.615850e-47 |
| Msa0663300 | Msa0807820 | 0.800591 | 1.341590e-48 | -8.615850e-47 |
| Msa0664600 | Msa0807820 | 0.857031 | 2.152671e-62 | -8.615850e-47 |
| Msa0693330 | Msa0807820 | 0.823697 | 1.204923e-53 | -8.615850e-47 |
| Msa0703680 | Msa0807820 | 0.800454 | 1.430575e-48 | -8.615850e-47 |
| Msa0710800 | Msa0807820 | 0.829683 | 4.487021e-55 | -8.615850e-47 |
| Msa0725000 | Msa0807820 | 0.857581 | 1.480226e-62 | -8.615850e-47 |
| Msa0729100 | Msa0807820 | 0.957843 | 1.015702e-115 | -8.615850e-47 |
| Msa0765270 | Msa0807820 | 0.868727 | 5.266160e-66 | -8.615850e-47 |
| Msa0766930 | Msa0807820 | 0.944017 | 4.211216e-103 | -8.615850e-47 |
| Msa0769180 | Msa0807820 | 0.801949 | 7.073556e-49 | -8.615850e-47 |
| Msa0788770 | Msa0807820 | 0.826332 | 2.875264e-54 | -8.615850e-47 |
| Msa0807260 | Msa0807820 | 0.805593 | 1.238885e-49 | -8.615850e-47 |
| Msa0807280 | Msa0807820 | 0.965382 | 1.565343e-124 | -8.615850e-47 |
| Msa0807820 | Msa0815630 | 0.821117 | 4.789149e-53 | -8.615850e-47 |
| Msa0807820 | Msa0833530 | 0.802296 | 6.000563e-49 | -8.615850e-47 |
| Msa0807820 | Msa0845110 | 0.860182 | 2.468246e-63 | -8.615850e-47 |
| Msa0807820 | Msa0856050 | 0.811783 | 5.890776e-51 | -8.615850e-47 |
| Msa0807820 | Msa0861510 | 0.845006 | 5.315543e-59 | -8.615850e-47 |
| Msa0807820 | Msa0861530 | 0.824991 | 5.980217e-54 | -8.615850e-47 |
| Msa0807820 | Msa0861600 | 0.844827 | 5.937933e-59 | -8.615850e-47 |
| Msa0807820 | Msa0866250 | 0.828187 | 1.033302e-54 | -8.615850e-47 |
| Msa0807820 | Msa0866290 | 0.958451 | 2.282420e-116 | -8.615850e-47 |
| Msa0807820 | Msa0943440 | 0.813371 | 2.647895e-51 | -8.615850e-47 |
| Msa0807820 | Msa0945190 | 0.807810 | 4.213917e-50 | -8.615850e-47 |
| Msa0807820 | Msa0967870 | 0.817757 | 2.793784e-52 | -8.615850e-47 |
| Msa0807820 | Msa0980140 | 0.825816 | 3.813736e-54 | -8.615850e-47 |
| Msa0807820 | Msa1031930 | 0.802307 | 5.970014e-49 | -8.615850e-47 |
| Msa0807820 | Msa1045140 | 0.802764 | 4.805274e-49 | -8.615850e-47 |
| Msa0807820 | Msa1047870 | 0.804701 | 1.903998e-49 | -8.615850e-47 |
| Msa0807820 | Msa1051830 | 0.806563 | 7.742404e-50 | -8.615850e-47 |
| Msa0807820 | Msa1079230 | 0.803544 | 3.314623e-49 | -8.615850e-47 |
| Msa0807820 | Msa1113340 | 0.832470 | 9.283681e-56 | -8.615850e-47 |
| Msa0807820 | Msa1123380 | 0.801354 | 9.369289e-49 | -8.615850e-47 |
| Msa0807820 | Msa1124950 | 0.813864 | 2.062945e-51 | -8.615850e-47 |
| Msa0807820 | Msa1130890 | 0.838564 | 2.667949e-57 | -8.615850e-47 |
| Msa0807820 | Msa1130950 | 0.817812 | 2.715543e-52 | -8.615850e-47 |
| Msa0807820 | Msa1135270 | 0.818855 | 1.576825e-52 | -8.615850e-47 |
| Msa0807820 | Msa1140210 | 0.806759 | 7.036925e-50 | -8.615850e-47 |
| Msa0807820 | Msa1140220 | 0.801904 | 7.223455e-49 | -8.615850e-47 |
| Msa0807820 | Msa1145580 | 0.805702 | 1.175261e-49 | -8.615850e-47 |
| Msa0807820 | Msa1162770 | 0.807405 | 5.136404e-50 | -8.615850e-47 |
| Msa0807820 | Msa1174530 | 0.826970 | 2.024768e-54 | -8.615850e-47 |
| Msa0807820 | Msa1183120 | 0.803181 | 3.939784e-49 | -8.615850e-47 |
| Msa0807820 | Msa1213800 | 0.837188 | 6.024546e-57 | -8.615850e-47 |
| Msa0807820 | Msa1228200 | 0.809626 | 1.724485e-50 | -8.615850e-47 |
| Msa0807820 | Msa1229500 | 0.817178 | 3.772215e-52 | -8.615850e-47 |
| Msa0807820 | Msa1235250 | 0.812109 | 5.001294e-51 | -8.615850e-47 |
| Msa0807820 | Msa1271990 | 0.823319 | 1.476868e-53 | -8.615850e-47 |
| Msa0807820 | Msa1276660 | 0.830842 | 2.337933e-55 | -8.615850e-47 |
| Msa0807820 | Msa1348090 | 0.821272 | 4.410310e-53 | -8.615850e-47 |
| Msa0807820 | Msa1356830 | 0.827528 | 1.488449e-54 | -8.615850e-47 |
| Msa0807820 | Msa1360980 | 0.803486 | 3.407545e-49 | -8.615850e-47 |
| Msa0807820 | Msa1369150 | 0.827252 | 1.733240e-54 | -8.615850e-47 |
| Msa0807820 | Msa1371520 | 0.846358 | 2.284232e-59 | -8.615850e-47 |
| Msa0807820 | Msa1385890 | 0.824123 | 9.569260e-54 | -8.615850e-47 |
| Msa0807820 | Msa1386710 | 0.834160 | 3.518540e-56 | -8.615850e-47 |
| Msa0807820 | Msa1387870 | 0.805819 | 1.110142e-49 | -8.615850e-47 |
| Msa0807820 | Msa1404170 | 0.828973 | 6.676069e-55 | -8.615850e-47 |
| Msa0807820 | Msa1412000 | 0.812144 | 4.913508e-51 | -8.615850e-47 |
| Msa0807820 | Msa1419370 | 0.808288 | 3.333799e-50 | -8.615850e-47 |
| Msa0807820 | Msa1425880 | 0.825105 | 5.619651e-54 | -8.615850e-47 |
| Msa0807820 | Msa1432500 | 0.836684 | 8.098395e-57 | -8.615850e-47 |
| Msa0807820 | Msa1437940 | 0.835090 | 2.054407e-56 | -8.615850e-47 |
| Msa0807820 | Msa1440960 | 0.849734 | 2.672998e-60 | -8.615850e-47 |
| Msa0807820 | Msa1443930 | 0.813870 | 2.056364e-51 | -8.615850e-47 |
| Msa0807820 | Msa1459460 | 0.801410 | 9.123263e-49 | -8.615850e-47 |
| Msa0807820 | Msa1464810 | 0.811569 | 6.557117e-51 | -8.615850e-47 |
| Msa0131900 | Msa0807820 | 0.802488 | 5.479447e-49 | -8.615850e-47 |
| Msa0136650 | Msa0807820 | 0.834566 | 2.783290e-56 | -8.615850e-47 |
| Msa0138360 | Msa0807820 | 0.845142 | 4.884317e-59 | -8.615850e-47 |
| Msa0144360 | Msa0807820 | 0.826555 | 2.543716e-54 | -8.615850e-47 |
| Msa0147980 | Msa0807820 | 0.820937 | 5.266311e-53 | -8.615850e-47 |
| Msa0152400 | Msa0807820 | 0.828917 | 6.887032e-55 | -8.615850e-47 |
| Msa0168500 | Msa0807820 | 0.801555 | 8.520824e-49 | -8.615850e-47 |
| Msa0173890 | Msa0807820 | 0.841609 | 4.283057e-58 | -8.615850e-47 |
| Msa0174450 | Msa0807820 | 0.826980 | 2.013567e-54 | -8.615850e-47 |
| Msa0191700 | Msa0807820 | 0.820285 | 7.435892e-53 | -8.615850e-47 |
| Msa0214550 | Msa0807820 | 0.834245 | 3.350539e-56 | -8.615850e-47 |
| Msa0221000 | Msa0807820 | 0.834418 | 3.031231e-56 | -8.615850e-47 |
| Msa0225100 | Msa0807820 | 0.816112 | 6.541756e-52 | -8.615850e-47 |
| Msa0233730 | Msa0807820 | 0.822813 | 1.938012e-53 | -8.615850e-47 |
| Msa0365100 | Msa0807820 | 0.824204 | 9.159057e-54 | -8.615850e-47 |
| Msa0376630 | Msa0807820 | 0.821849 | 3.244056e-53 | -8.615850e-47 |
| Msa0378720 | Msa0807820 | 0.851422 | 8.967963e-61 | -8.615850e-47 |
| Msa0380620 | Msa0807820 | 0.822316 | 2.528641e-53 | -8.615850e-47 |
| Msa0406770 | Msa0807820 | 0.804977 | 1.667193e-49 | -8.615850e-47 |
| Msa0428370 | Msa0807820 | 0.808064 | 3.721432e-50 | -8.615850e-47 |
| Msa0428920 | Msa0807820 | 0.805356 | 1.388778e-49 | -8.615850e-47 |
| Msa0430260 | Msa0807820 | 0.836633 | 8.347556e-57 | -8.615850e-47 |
| Msa0474730 | Msa0807820 | 0.845615 | 3.635397e-59 | -8.615850e-47 |
| Msa0479170 | Msa0807820 | 0.840105 | 1.062257e-57 | -8.615850e-47 |
| Msa0479200 | Msa0807820 | 0.856811 | 2.499891e-62 | -8.615850e-47 |
| Msa0244640 | Msa0807820 | 0.802994 | 4.307379e-49 | -8.615850e-47 |
| Msa0247940 | Msa0807820 | 0.803726 | 3.038448e-49 | -8.615850e-47 |
| Msa0249540 | Msa0807820 | 0.803662 | 3.132341e-49 | -8.615850e-47 |
| Msa0261170 | Msa0807820 | 0.802356 | 5.832745e-49 | -8.615850e-47 |
| Msa0263080 | Msa0807820 | 0.810567 | 1.080834e-50 | -8.615850e-47 |
| Msa0266180 | Msa0807820 | 0.804560 | 2.036887e-49 | -8.615850e-47 |
| Msa0267920 | Msa0807820 | 0.808241 | 3.411881e-50 | -8.615850e-47 |
| Msa0277450 | Msa0807820 | 0.829210 | 5.846865e-55 | -8.615850e-47 |
| Msa0287740 | Msa0807820 | 0.813439 | 2.558436e-51 | -8.615850e-47 |
| Msa0292400 | Msa0807820 | 0.810389 | 1.181101e-50 | -8.615850e-47 |
| Msa0296250 | Msa0807820 | 0.830110 | 3.531589e-55 | -8.615850e-47 |
| Msa0297790 | Msa0807820 | 0.803003 | 4.288499e-49 | -8.615850e-47 |
| Msa0300270 | Msa0807820 | 0.837293 | 5.662828e-57 | -8.615850e-47 |
| Msa0300320 | Msa0807820 | 0.827901 | 1.211284e-54 | -8.615850e-47 |
| Msa0300690 | Msa0807820 | 0.800038 | 1.738514e-48 | -8.615850e-47 |
| Msa0312360 | Msa0807820 | 0.806670 | 7.350242e-50 | -8.615850e-47 |
| Msa0317160 | Msa0807820 | 0.805071 | 1.593535e-49 | -8.615850e-47 |
| Msa0318700 | Msa0807820 | 0.801404 | 9.150401e-49 | -8.615850e-47 |
| Msa0320590 | Msa0807820 | 0.812830 | 3.480556e-51 | -8.615850e-47 |
| Msa0332640 | Msa0807820 | 0.808974 | 2.379329e-50 | -8.615850e-47 |
| Msa0335800 | Msa0807820 | 0.803689 | 3.092204e-49 | -8.615850e-47 |
| Msa0337700 | Msa0807820 | 0.838764 | 2.369355e-57 | -8.615850e-47 |
| Msa0341690 | Msa0807820 | 0.835581 | 1.544354e-56 | -8.615850e-47 |
| Msa0360210 | Msa0807820 | 0.804404 | 2.195876e-49 | -8.615850e-47 |
| Msa0500380 | Msa0807820 | 0.832135 | 1.123306e-55 | -8.615850e-47 |
| Msa0518030 | Msa0807820 | 0.811429 | 7.032132e-51 | -8.615850e-47 |
| Msa0527190 | Msa0807820 | 0.842470 | 2.536136e-58 | -8.615850e-47 |
| Msa0527860 | Msa0807820 | 0.808336 | 3.256507e-50 | -8.615850e-47 |
| Msa0545340 | Msa0807820 | 0.818907 | 1.534319e-52 | -8.615850e-47 |
| Msa0556010 | Msa0807820 | 0.804637 | 1.962849e-49 | -8.615850e-47 |
| Msa0568480 | Msa0807820 | 0.805775 | 1.134039e-49 | -8.615850e-47 |
| Msa0597790 | Msa0807820 | 0.820166 | 7.918845e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807820 | MtrunA17_Chr5g0422371 | 96.429 | 140 | 5 | 0 | 2 | 141 | 4 | 143 | 8.20e-93 | 271 |
| Msa0807820 | MtrunA17_Chr1g0203371 | 40.714 | 140 | 75 | 4 | 1 | 138 | 1 | 134 | 8.37e-24 | 94.0 |
| Msa0807820 | MtrunA17_Chr6g0456901 | 39.706 | 136 | 77 | 3 | 1 | 135 | 1 | 132 | 3.19e-23 | 92.8 |
| Msa0807820 | MtrunA17_Chr1g0161921 | 38.168 | 131 | 74 | 3 | 14 | 142 | 15 | 140 | 3.67e-22 | 89.4 |
| Msa0807820 | MtrunA17_Chr8g0375991 | 36.434 | 129 | 75 | 3 | 14 | 140 | 9 | 132 | 2.76e-17 | 76.6 |
| Msa0807820 | MtrunA17_Chr1g0161941 | 31.538 | 130 | 84 | 4 | 14 | 142 | 9 | 134 | 1.42e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807820 | AT1G26100.1 | 59.859 | 142 | 46 | 1 | 1 | 142 | 1 | 131 | 6.09e-51 | 164 |
| Msa0807820 | AT5G38630.1 | 44.275 | 131 | 64 | 5 | 9 | 136 | 9 | 133 | 1.09e-26 | 102 |
| Msa0807820 | AT4G25570.2 | 39.552 | 134 | 76 | 3 | 9 | 141 | 49 | 178 | 1.20e-24 | 97.8 |
| Msa0807820 | AT4G25570.1 | 39.552 | 134 | 76 | 3 | 9 | 141 | 8 | 137 | 2.01e-24 | 96.3 |
| Msa0807820 | AT1G14730.1 | 30.556 | 144 | 90 | 4 | 14 | 152 | 20 | 158 | 7.22e-13 | 65.1 |
Find 92 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAGTGGCTTTGTTATTT+TGG | 0.056164 | 5_3:+31074239 | Msa0807820:three_prime_UTR |
| GCTTTAGCTTCTGGGATATT+TGG | 0.112597 | 5_3:+31072249 | Msa0807820:CDS |
| TAGCATTTCTTGTTCTCTTC+TGG | 0.118815 | 5_3:+31071825 | Msa0807820:CDS |
| CAAGGGGTGGCTTTAGCTTC+TGG | 0.175443 | 5_3:+31072240 | Msa0807820:CDS |
| GAATGTTTGTGCAGCAATTT+TGG | 0.224729 | 5_3:+31072161 | Msa0807820:intron |
| TTACCTTGGCATGTATTTCT+TGG | 0.229367 | 5_3:+31074075 | Msa0807820:CDS |
| TTTGCTTTGTTGTAATTCTA+TGG | 0.245295 | 5_3:+31071380 | Msa0807820:five_prime_UTR |
| TTGATTTGTGTATCCCTCTT+TGG | 0.260850 | 5_3:+31072342 | Msa0807820:CDS |
| CTTTAGCTTCTGGGATATTT+GGG | 0.267158 | 5_3:+31072250 | Msa0807820:CDS |
| CTTCTGGGATATTTGGGATT+TGG | 0.279862 | 5_3:+31072256 | Msa0807820:CDS |
| TGTTATGACGCCATCTTAAT+TGG | 0.285745 | 5_3:-31074413 | None:intergenic |
| TCCTGTTGAGGAAGAGAATT+AGG | 0.298620 | 5_3:-31071881 | None:intergenic |
| ATTTCTACAGCCTTCATTCA+TGG | 0.299138 | 5_3:+31072313 | Msa0807820:CDS |
| CTCTTTCTTGCGAGAGTTTG+TGG | 0.301862 | 5_3:+31071794 | Msa0807820:CDS |
| GCAGTGGCTTCTTGAACTTT+TGG | 0.301868 | 5_3:+31074016 | Msa0807820:intron |
| AAGGGGTGGCTTTAGCTTCT+GGG | 0.303519 | 5_3:+31072241 | Msa0807820:CDS |
| GTTGTAAATTCTTTAGGCCT+TGG | 0.309741 | 5_3:+31074207 | Msa0807820:three_prime_UTR |
| AGCATTTCTTGTTCTCTTCT+GGG | 0.319777 | 5_3:+31071826 | Msa0807820:CDS |
| TACTACCTTCTCCACTTAAA+AGG | 0.321243 | 5_3:-31072044 | None:intergenic |
| CCACAATCCCATCATTTACT+TGG | 0.326307 | 5_3:-31072287 | None:intergenic |
| TCCATGGTTGTAAATTCTTT+AGG | 0.339651 | 5_3:+31074201 | Msa0807820:three_prime_UTR |
| CATCCTGTGCTCATGGTCAT+TGG | 0.339718 | 5_3:+31072015 | Msa0807820:CDS |
| ACATTTAGTTACAGTTGTTA+TGG | 0.357021 | 5_3:+31071742 | Msa0807820:exon |
| TCTTGTTCTCTTCTGGGCTC+TGG | 0.357755 | 5_3:+31071832 | Msa0807820:CDS |
| GCAGATCTTAGAATAGAAAA+TGG | 0.360436 | 5_3:-31071469 | None:intergenic |
| GCAGTAGCAACGGCGGAAAC+TGG | 0.361598 | 5_3:+31074117 | Msa0807820:CDS |
| TTGTTAGAATTTAGATATCT+TGG | 0.364277 | 5_3:+31074383 | Msa0807820:three_prime_UTR |
| TCCTAATTCTCTTCCTCAAC+AGG | 0.404001 | 5_3:+31071880 | Msa0807820:CDS |
| TGTATCCCTCTTTGGAGCTC+AGG | 0.406685 | 5_3:+31072350 | Msa0807820:CDS |
| TAGATGGTTGCCTGGGTCAA+GGG | 0.416984 | 5_3:+31072188 | Msa0807820:CDS |
| CTGCCAATGCATAAGTGTAT+AGG | 0.426996 | 5_3:-31074098 | None:intergenic |
| ACAAAATTCCAAGTAAATGA+TGG | 0.437217 | 5_3:+31072279 | Msa0807820:CDS |
| TTCTATTCTAAGATCTGCAA+TGG | 0.437930 | 5_3:+31071474 | Msa0807820:five_prime_UTR |
| TACAGCCTTCATTCATGGAT+GGG | 0.445813 | 5_3:+31072318 | Msa0807820:CDS |
| CATGGACTCAGTGCTGTGTT+TGG | 0.448440 | 5_3:-31074184 | None:intergenic |
| ATAGATGGTTGCCTGGGTCA+AGG | 0.449560 | 5_3:+31072187 | Msa0807820:CDS |
| GCGGCGACAACGGTCAGATC+TGG | 0.449819 | 5_3:+31071563 | Msa0807820:five_prime_UTR |
| GAAGAGAATTAGGAGTATTG+AGG | 0.459271 | 5_3:-31071871 | None:intergenic |
| AAATGCGATCAGTGAGGATA+AGG | 0.461868 | 5_3:+31074049 | Msa0807820:CDS |
| TCGGTGCATTTATGTCTTCA+AGG | 0.466772 | 5_3:+31072222 | Msa0807820:CDS |
| TTGGTGCATAGATGGTTGCC+TGG | 0.471390 | 5_3:+31072180 | Msa0807820:CDS |
| GTAAACAACGATTGTGTTGA+AGG | 0.474451 | 5_3:+31071497 | Msa0807820:five_prime_UTR |
| GGTTCTCCATCCTGTGCTCA+TGG | 0.477323 | 5_3:+31072008 | Msa0807820:intron |
| CTACAGCCTTCATTCATGGA+TGG | 0.480089 | 5_3:+31072317 | Msa0807820:CDS |
| AGATGGTTGCCTGGGTCAAG+GGG | 0.483244 | 5_3:+31072189 | Msa0807820:CDS |
| AAGAGCAAAGGGAGTAGTGA+GGG | 0.491250 | 5_3:-31071776 | None:intergenic |
| CTCTCGCAAGAAAGAGCAAA+GGG | 0.500913 | 5_3:-31071787 | None:intergenic |
| CGGTGCATTTATGTCTTCAA+GGG | 0.507370 | 5_3:+31072223 | Msa0807820:CDS |
| GTCAATTTGGTCGCAAACAA+AGG | 0.515334 | 5_3:+31071414 | Msa0807820:five_prime_UTR |
| TCTATTCTAAGATCTGCAAT+GGG | 0.521294 | 5_3:+31071475 | Msa0807820:five_prime_UTR |
| CAAACACAGCACTGAGTCCA+TGG | 0.530906 | 5_3:+31074185 | Msa0807820:exon |
| CAAAATTCCAAGTAAATGAT+GGG | 0.535853 | 5_3:+31072280 | Msa0807820:CDS |
| CCAAGTAAATGATGGGATTG+TGG | 0.538655 | 5_3:+31072287 | Msa0807820:CDS |
| TCAAACCCATCCATGAATGA+AGG | 0.539092 | 5_3:-31072323 | None:intergenic |
| GGATCTAAGAGCCAGGTTGT+CGG | 0.540019 | 5_3:+31071650 | Msa0807820:five_prime_UTR |
| GTGTAATACTCCCTCCGTCC+CGG | 0.540277 | 5_3:-31071294 | None:intergenic |
| GTGGATGGCTGCCGACAACC+TGG | 0.544797 | 5_3:-31071661 | None:intergenic |
| GCATTTATGTCTTCAAGGGG+TGG | 0.549961 | 5_3:+31072227 | Msa0807820:CDS |
| TGGCCTATACACTTATGCAT+TGG | 0.552843 | 5_3:+31074095 | Msa0807820:CDS |
| GTCAGTTATTCCGGGACGGA+GGG | 0.558569 | 5_3:+31071284 | None:intergenic |
| TGGTCACAAGCCAATTAAGA+TGG | 0.558924 | 5_3:+31074403 | Msa0807820:three_prime_UTR |
| TCACTGATCGCATTTCTCCT+CGG | 0.562616 | 5_3:-31074041 | None:intergenic |
| CTTGGTCTTGCTCTCCTCAG+TGG | 0.566596 | 5_3:+31074225 | Msa0807820:three_prime_UTR |
| AGGCCAAGAAATACATGCCA+AGG | 0.572983 | 5_3:-31074078 | None:intergenic |
| TGGTGCATAGATGGTTGCCT+GGG | 0.586545 | 5_3:+31072181 | Msa0807820:CDS |
| TTATGCATTGGCAGTAGCAA+CGG | 0.591173 | 5_3:+31074107 | Msa0807820:CDS |
| GGTCAGTTATTCCGGGACGG+AGG | 0.593751 | 5_3:+31071283 | None:intergenic |
| GCCTAAAGAATTTACAACCA+TGG | 0.598613 | 5_3:-31074202 | None:intergenic |
| AATCCAATGACCATGAGCAC+AGG | 0.602677 | 5_3:-31072018 | None:intergenic |
| GTTGCTAAACGCGGCGACAA+CGG | 0.605493 | 5_3:+31071553 | Msa0807820:five_prime_UTR |
| CTCACTACTAAATACACTCG+TGG | 0.610031 | 5_3:-31071680 | None:intergenic |
| CAATGACCATGAGCACAGGA+TGG | 0.614301 | 5_3:-31072014 | None:intergenic |
| CTACTAAATACACTCGTGGA+TGG | 0.619730 | 5_3:-31071676 | None:intergenic |
| TGAGGATAAGGATCTTACCT+TGG | 0.620818 | 5_3:+31074061 | Msa0807820:CDS |
| GATGGTTGCCTGGGTCAAGG+GGG | 0.624454 | 5_3:+31072190 | Msa0807820:CDS |
| AATGGTATCATACTGACAGA+AGG | 0.626636 | 5_3:-31071451 | None:intergenic |
| ACTCTCGCAAGAAAGAGCAA+AGG | 0.634673 | 5_3:-31071788 | None:intergenic |
| GAAGCAGTGGTTGCTAAACG+CGG | 0.634869 | 5_3:+31071544 | Msa0807820:five_prime_UTR |
| ATGGGTCAGTTATTCCGGGA+CGG | 0.635699 | 5_3:+31071280 | None:intergenic |
| TACTCACCTGAGCTCCAAAG+AGG | 0.638028 | 5_3:-31072356 | None:intergenic |
| ACTCACCTGAGCTCCAAAGA+GGG | 0.638153 | 5_3:-31072355 | None:intergenic |
| TGCATTGGCAGTAGCAACGG+CGG | 0.640059 | 5_3:+31074110 | Msa0807820:CDS |
| CACTGAGGAGAGCAAGACCA+AGG | 0.641031 | 5_3:-31074224 | None:intergenic |
| GTGAGTGAGTGACTAGTGAG+AGG | 0.642048 | 5_3:+31071698 | Msa0807820:five_prime_UTR |
| CCAAAATAACAAAGCCACTG+AGG | 0.646081 | 5_3:-31074239 | None:intergenic |
| GGTGCATTTATGTCTTCAAG+GGG | 0.646132 | 5_3:+31072224 | Msa0807820:CDS |
| AAAGAGCAAAGGGAGTAGTG+AGG | 0.647530 | 5_3:-31071777 | None:intergenic |
| TAAACAACGATTGTGTTGAA+GGG | 0.648525 | 5_3:+31071498 | Msa0807820:five_prime_UTR |
| GCATAGATGAGATCCTGTTG+AGG | 0.669004 | 5_3:-31071893 | None:intergenic |
| GAGTAGTGAGGGAAAGACAG+TGG | 0.669481 | 5_3:-31071765 | None:intergenic |
| TAAATGTTGTGCAGAAGCAG+TGG | 0.679941 | 5_3:+31071531 | Msa0807820:five_prime_UTR |
| GAGGAGAAATGCGATCAGTG+AGG | 0.738861 | 5_3:+31074043 | Msa0807820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATGTAATTAAATAAAAA+GGG | - | chr5_3:31071949-31071968 | None:intergenic | 10.0% |
| !! | TTTGATGTAATTAAATAAAA+AGG | - | chr5_3:31071950-31071969 | None:intergenic | 10.0% |
| !!! | TTTAATTTTAATTTAATTGC+AGG | + | chr5_3:31071987-31072006 | Msa0807820:intron | 10.0% |
| !!! | TTCTAAATTAATTTTTACTT+AGG | + | chr5_3:31072417-31072436 | Msa0807820:intron | 10.0% |
| !! | AATAATTTGATAAAAACTAA+AGG | + | chr5_3:31072590-31072609 | Msa0807820:intron | 10.0% |
| !! | AATAATTTGATAAAAACTAA+AGG | - | chr5_3:31072590-31072609 | None:intergenic | 10.0% |
| !! | AATACATATATGTTAATTGA+TGG | + | chr5_3:31072492-31072511 | Msa0807820:intron | 15.0% |
| !! | GATAATAACAATTCATAATT+GGG | - | chr5_3:31073674-31073693 | None:intergenic | 15.0% |
| !! | TGATAATAACAATTCATAAT+TGG | - | chr5_3:31073675-31073694 | None:intergenic | 15.0% |
| !! | AACCCAAAAATATTATGTAT+TGG | + | chr5_3:31072080-31072099 | Msa0807820:intron | 20.0% |
| !! | ACCCAAAAATATTATGTATT+GGG | + | chr5_3:31072081-31072100 | Msa0807820:intron | 20.0% |
| !!! | TCCCAATACATAATATTTTT+GGG | - | chr5_3:31072085-31072104 | None:intergenic | 20.0% |
| !!! | ATCCCAATACATAATATTTT+TGG | - | chr5_3:31072086-31072105 | None:intergenic | 20.0% |
| !! | AAATATTATGTATTGGGATT+AGG | + | chr5_3:31072087-31072106 | Msa0807820:intron | 20.0% |
| !! | AGCAACTAAATTGAAATAAA+AGG | - | chr5_3:31073604-31073623 | None:intergenic | 20.0% |
| !! | ACACAATTAATTTCTATCAA+TGG | - | chr5_3:31073749-31073768 | None:intergenic | 20.0% |
| !!! | GCAAAATTCTTTTATGTATA+TGG | + | chr5_3:31073940-31073959 | Msa0807820:intron | 20.0% |
| !!! | TTTTGAAGAATTTGATACTA+AGG | - | chr5_3:31074276-31074295 | None:intergenic | 20.0% |
| !! | TTGTTAGAATTTAGATATCT+TGG | + | chr5_3:31074383-31074402 | Msa0807820:three_prime_UTR | 20.0% |
| ! | ACAACAAAGCAAAAAACTAA+AGG | - | chr5_3:31071373-31071392 | None:intergenic | 25.0% |
| !! | TTTGCTTTGTTGTAATTCTA+TGG | + | chr5_3:31071380-31071399 | Msa0807820:five_prime_UTR | 25.0% |
| ! | ACATTTAGTTACAGTTGTTA+TGG | + | chr5_3:31071742-31071761 | Msa0807820:exon | 25.0% |
| !! | ATTGGATTTATCCTTTTAAG+TGG | + | chr5_3:31072033-31072052 | Msa0807820:CDS | 25.0% |
| ! | ATTAGGAATCAAGTCATTAT+TGG | + | chr5_3:31072104-31072123 | Msa0807820:intron | 25.0% |
| ! | ACAAAATTCCAAGTAAATGA+TGG | + | chr5_3:31072279-31072298 | Msa0807820:CDS | 25.0% |
| ! | CAAAATTCCAAGTAAATGAT+GGG | + | chr5_3:31072280-31072299 | Msa0807820:CDS | 25.0% |
| !!! | TTAATTGATGGTGATTTTGT+TGG | + | chr5_3:31072504-31072523 | Msa0807820:intron | 25.0% |
| !! | TTTTATGGTGAACTTTACAA+TGG | - | chr5_3:31072665-31072684 | None:intergenic | 25.0% |
| !!! | TGAGAGTGTATTGTTTTTTA+TGG | - | chr5_3:31072855-31072874 | None:intergenic | 25.0% |
| ! | AATGCATATATGTTAAGTGA+TGG | - | chr5_3:31073043-31073062 | None:intergenic | 25.0% |
| ! | TTAATTGATTGCGATATTGT+CGG | - | chr5_3:31073068-31073087 | None:intergenic | 25.0% |
| !! | TATGTTGATTGATTGTGATA+TGG | - | chr5_3:31073145-31073164 | None:intergenic | 25.0% |
| ! | TTGATTGATTGTGATATTGT+TGG | - | chr5_3:31073174-31073193 | None:intergenic | 25.0% |
| ! | TATTTCTCACAATTTAAGTG+AGG | + | chr5_3:31073241-31073260 | Msa0807820:intron | 25.0% |
| ! | ATTTCTCACAATTTAAGTGA+GGG | + | chr5_3:31073242-31073261 | Msa0807820:intron | 25.0% |
| ! | AACAATAAGAAACTGGAATT+TGG | - | chr5_3:31073579-31073598 | None:intergenic | 25.0% |
| ! | AAAGGATAACAATAAGAAAC+TGG | - | chr5_3:31073586-31073605 | None:intergenic | 25.0% |
| ! | GGCTTTTACTTATGTCAATT+TGG | + | chr5_3:31071401-31071420 | Msa0807820:five_prime_UTR | 30.0% |
| GCAGATCTTAGAATAGAAAA+TGG | - | chr5_3:31071472-31071491 | None:intergenic | 30.0% | |
| !! | TTCTATTCTAAGATCTGCAA+TGG | + | chr5_3:31071474-31071493 | Msa0807820:five_prime_UTR | 30.0% |
| !! | TCTATTCTAAGATCTGCAAT+GGG | + | chr5_3:31071475-31071494 | Msa0807820:five_prime_UTR | 30.0% |
| TAAACAACGATTGTGTTGAA+GGG | + | chr5_3:31071498-31071517 | Msa0807820:five_prime_UTR | 30.0% | |
| AGAAAAAGAAAGAGAGAAAG+AGG | - | chr5_3:31071605-31071624 | None:intergenic | 30.0% | |
| !!! | ATCCACTTTTTCTTCCATAA+CGG | - | chr5_3:31071634-31071653 | None:intergenic | 30.0% |
| AAAGGGAATGAAGAAAATAG+AGG | - | chr5_3:31071932-31071951 | None:intergenic | 30.0% | |
| !! | TTTATCCTTTTAAGTGGAGA+AGG | + | chr5_3:31072039-31072058 | Msa0807820:CDS | 30.0% |
| ATGACTTAAATTGGAGATAG+AGG | - | chr5_3:31072815-31072834 | None:intergenic | 30.0% | |
| TCTATCTCCAATTTAAGTCA+TGG | + | chr5_3:31072719-31072738 | Msa0807820:intron | 30.0% | |
| ! | ACTTTTGCCATGACTTAAAT+TGG | - | chr5_3:31072806-31072825 | None:intergenic | 30.0% |
| ATTTAAGTCATGGCAAAAGT+AGG | + | chr5_3:31072729-31072748 | Msa0807820:intron | 30.0% | |
| ATTTAAGTCATGGCAAAAGT+AGG | - | chr5_3:31072729-31072748 | None:intergenic | 30.0% | |
| ! | ACTTTTGCCATGACTTAAAT+TGG | + | chr5_3:31072806-31072825 | Msa0807820:intron | 30.0% |
| TCTATCTCCAATTTAAGTCA+TGG | - | chr5_3:31072719-31072738 | None:intergenic | 30.0% | |
| ATGACTTAAATTGGAGATAG+AGG | + | chr5_3:31072815-31072834 | Msa0807820:intron | 30.0% | |
| !! | TTAAGTGATGGAGATTTTGT+TGG | - | chr5_3:31073031-31073050 | None:intergenic | 30.0% |
| TTGATTGATTGCGATATTGT+CGG | - | chr5_3:31073104-31073123 | None:intergenic | 30.0% | |
| TTGATTGATTGTGATATGGT+TGG | - | chr5_3:31073141-31073160 | None:intergenic | 30.0% | |
| TTTCTCACAATTTAAGTGAG+GGG | + | chr5_3:31073243-31073262 | Msa0807820:intron | 30.0% | |
| TACTTACTGTATACATAGTG+TGG | - | chr5_3:31073277-31073296 | None:intergenic | 30.0% | |
| TCAGGACATACATGAATAAA+GGG | - | chr5_3:31073629-31073648 | None:intergenic | 30.0% | |
| ATCAGGACATACATGAATAA+AGG | - | chr5_3:31073630-31073649 | None:intergenic | 30.0% | |
| ! | TGAATTGTTATTATCACCAC+TGG | + | chr5_3:31073679-31073698 | Msa0807820:intron | 30.0% |
| TATATGCACAGCAATAACAA+GGG | - | chr5_3:31073781-31073800 | None:intergenic | 30.0% | |
| TTATATGCACAGCAATAACA+AGG | - | chr5_3:31073782-31073801 | None:intergenic | 30.0% | |
| TCCATGGTTGTAAATTCTTT+AGG | + | chr5_3:31074201-31074220 | Msa0807820:three_prime_UTR | 30.0% | |
| ! | AACTTTTGTACTCAGATACT+AGG | + | chr5_3:31074298-31074317 | Msa0807820:three_prime_UTR | 30.0% |
| AATGGTATCATACTGACAGA+AGG | - | chr5_3:31071454-31071473 | None:intergenic | 35.0% | |
| GTAAACAACGATTGTGTTGA+AGG | + | chr5_3:31071497-31071516 | Msa0807820:five_prime_UTR | 35.0% | |
| !! | CTTTTTCTGAAAACCCGTTA+TGG | + | chr5_3:31071617-31071636 | Msa0807820:five_prime_UTR | 35.0% |
| !!! | TCCACTTTTTCTTCCATAAC+GGG | - | chr5_3:31071633-31071652 | None:intergenic | 35.0% |
| TAGCATTTCTTGTTCTCTTC+TGG | + | chr5_3:31071825-31071844 | Msa0807820:CDS | 35.0% | |
| AGCATTTCTTGTTCTCTTCT+GGG | + | chr5_3:31071826-31071845 | Msa0807820:CDS | 35.0% | |
| !! | GAAGAGAATTAGGAGTATTG+AGG | - | chr5_3:31071874-31071893 | None:intergenic | 35.0% |
| TACTACCTTCTCCACTTAAA+AGG | - | chr5_3:31072047-31072066 | None:intergenic | 35.0% | |
| ! | GAATGTTTGTGCAGCAATTT+TGG | + | chr5_3:31072161-31072180 | Msa0807820:intron | 35.0% |
| !! | CTTTAGCTTCTGGGATATTT+GGG | + | chr5_3:31072250-31072269 | Msa0807820:CDS | 35.0% |
| ATTTCTACAGCCTTCATTCA+TGG | + | chr5_3:31072313-31072332 | Msa0807820:CDS | 35.0% | |
| !! | TTGATTTGTGTATCCCTCTT+TGG | + | chr5_3:31072342-31072361 | Msa0807820:CDS | 35.0% |
| TGGAGATAGAGGAAAAAAGA+AGG | - | chr5_3:31072826-31072845 | None:intergenic | 35.0% | |
| GCAAAAGTAGGAATTAGTGT+TGG | + | chr5_3:31072741-31072760 | Msa0807820:intron | 35.0% | |
| !! | AGTGTTGGTCTGAAGTAATA+CGG | - | chr5_3:31072779-31072798 | None:intergenic | 35.0% |
| TGGAGATAGAGGAAAAAAGA+AGG | + | chr5_3:31072826-31072845 | Msa0807820:intron | 35.0% | |
| ! | TAACTAACGCATGGGTATTT+TGG | - | chr5_3:31073431-31073450 | None:intergenic | 35.0% |
| AATCGCTACGTGAATTCAAA+TGG | - | chr5_3:31073549-31073568 | None:intergenic | 35.0% | |
| CAGGACATACATGAATAAAG+GGG | - | chr5_3:31073628-31073647 | None:intergenic | 35.0% | |
| ATATGCACAGCAATAACAAG+GGG | - | chr5_3:31073780-31073799 | None:intergenic | 35.0% | |
| GGAAATTGTAAACTAGTGTG+AGG | + | chr5_3:31073822-31073841 | Msa0807820:intron | 35.0% | |
| CAACATGTTGAACTTCGTTA+TGG | - | chr5_3:31073992-31074011 | None:intergenic | 35.0% | |
| TTACCTTGGCATGTATTTCT+TGG | + | chr5_3:31074075-31074094 | Msa0807820:CDS | 35.0% | |
| GCCTAAAGAATTTACAACCA+TGG | - | chr5_3:31074205-31074224 | None:intergenic | 35.0% | |
| GTTGTAAATTCTTTAGGCCT+TGG | + | chr5_3:31074207-31074226 | Msa0807820:three_prime_UTR | 35.0% | |
| TGTTATGACGCCATCTTAAT+TGG | - | chr5_3:31074416-31074435 | None:intergenic | 35.0% | |
| GTCAATTTGGTCGCAAACAA+AGG | + | chr5_3:31071414-31071433 | Msa0807820:five_prime_UTR | 40.0% | |
| TAAATGTTGTGCAGAAGCAG+TGG | + | chr5_3:31071531-31071550 | Msa0807820:five_prime_UTR | 40.0% | |
| ACCCGTTATGGAAGAAAAAG+TGG | + | chr5_3:31071629-31071648 | Msa0807820:five_prime_UTR | 40.0% | |
| AAAAAGTGGATCTAAGAGCC+AGG | + | chr5_3:31071643-31071662 | Msa0807820:five_prime_UTR | 40.0% | |
| CTACTAAATACACTCGTGGA+TGG | - | chr5_3:31071679-31071698 | None:intergenic | 40.0% | |
| CTCACTACTAAATACACTCG+TGG | - | chr5_3:31071683-31071702 | None:intergenic | 40.0% | |
| TCCTAATTCTCTTCCTCAAC+AGG | + | chr5_3:31071880-31071899 | Msa0807820:CDS | 40.0% | |
| TCCTGTTGAGGAAGAGAATT+AGG | - | chr5_3:31071884-31071903 | None:intergenic | 40.0% | |
| !! | CAGCAATTTTGGTGCATAGA+TGG | + | chr5_3:31072172-31072191 | Msa0807820:intron | 40.0% |
| TCGGTGCATTTATGTCTTCA+AGG | + | chr5_3:31072222-31072241 | Msa0807820:CDS | 40.0% | |
| CGGTGCATTTATGTCTTCAA+GGG | + | chr5_3:31072223-31072242 | Msa0807820:CDS | 40.0% | |
| GGTGCATTTATGTCTTCAAG+GGG | + | chr5_3:31072224-31072243 | Msa0807820:CDS | 40.0% | |
| !! | GCTTTAGCTTCTGGGATATT+TGG | + | chr5_3:31072249-31072268 | Msa0807820:CDS | 40.0% |
| !! | CTTCTGGGATATTTGGGATT+TGG | + | chr5_3:31072256-31072275 | Msa0807820:CDS | 40.0% |
| CCACAATCCCATCATTTACT+TGG | - | chr5_3:31072290-31072309 | None:intergenic | 40.0% | |
| ! | CCAAGTAAATGATGGGATTG+TGG | + | chr5_3:31072287-31072306 | Msa0807820:CDS | 40.0% |
| TACAGCCTTCATTCATGGAT+GGG | + | chr5_3:31072318-31072337 | Msa0807820:CDS | 40.0% | |
| TCAAACCCATCCATGAATGA+AGG | - | chr5_3:31072326-31072345 | None:intergenic | 40.0% | |
| GCAAAAGTAGGAGTTAGTGT+TGG | - | chr5_3:31072794-31072813 | None:intergenic | 40.0% | |
| TTTGGTCAGTTTGACTGGAT+GGG | - | chr5_3:31073413-31073432 | None:intergenic | 40.0% | |
| ! | TTTTGGTCAGTTTGACTGGA+TGG | - | chr5_3:31073414-31073433 | None:intergenic | 40.0% |
| !!! | GGTATTTTGGTCAGTTTGAC+TGG | - | chr5_3:31073418-31073437 | None:intergenic | 40.0% |
| GCGTTAGTTAACTAACGCAT+GGG | - | chr5_3:31073439-31073458 | None:intergenic | 40.0% | |
| TTGCGTGAGTTAACTTACAC+TGG | + | chr5_3:31073490-31073509 | Msa0807820:intron | 40.0% | |
| ! | AAGTGAAAAGCGCAACAATC+AGG | - | chr5_3:31073647-31073666 | None:intergenic | 40.0% |
| TCAAAAAGTCAAGCCTTGCA+CGG | - | chr5_3:31073717-31073736 | None:intergenic | 40.0% | |
| ! | AACTGCTGTAGCTGTTCTTT+TGG | + | chr5_3:31073801-31073820 | Msa0807820:intron | 40.0% |
| TGCGTTAGTTAACTAACGCA+AGG | + | chr5_3:31073868-31073887 | Msa0807820:intron | 40.0% | |
| GCGTTAGTTAACTAACGCAA+GGG | + | chr5_3:31073869-31073888 | Msa0807820:intron | 40.0% | |
| !!! | AACTAACGCAAGGGCATTTT+TGG | + | chr5_3:31073878-31073897 | Msa0807820:intron | 40.0% |
| !!! | GCATTTTTGGCATGGCAAAA+AGG | + | chr5_3:31073891-31073910 | Msa0807820:intron | 40.0% |
| TTCAACATGTTGCATTGCAG+TGG | + | chr5_3:31074000-31074019 | Msa0807820:intron | 40.0% | |
| AAATGCGATCAGTGAGGATA+AGG | + | chr5_3:31074049-31074068 | Msa0807820:CDS | 40.0% | |
| TGAGGATAAGGATCTTACCT+TGG | + | chr5_3:31074061-31074080 | Msa0807820:CDS | 40.0% | |
| TGGCCTATACACTTATGCAT+TGG | + | chr5_3:31074095-31074114 | Msa0807820:CDS | 40.0% | |
| CTGCCAATGCATAAGTGTAT+AGG | - | chr5_3:31074101-31074120 | None:intergenic | 40.0% | |
| ! | TTATGCATTGGCAGTAGCAA+CGG | + | chr5_3:31074107-31074126 | Msa0807820:CDS | 40.0% |
| CCAAAATAACAAAGCCACTG+AGG | - | chr5_3:31074242-31074261 | None:intergenic | 40.0% | |
| !!! | CCTCAGTGGCTTTGTTATTT+TGG | + | chr5_3:31074239-31074258 | Msa0807820:three_prime_UTR | 40.0% |
| TGGTCACAAGCCAATTAAGA+TGG | + | chr5_3:31074403-31074422 | Msa0807820:three_prime_UTR | 40.0% | |
| AAGAGCAAAGGGAGTAGTGA+GGG | - | chr5_3:31071779-31071798 | None:intergenic | 45.0% | |
| AAAGAGCAAAGGGAGTAGTG+AGG | - | chr5_3:31071780-31071799 | None:intergenic | 45.0% | |
| CTCTCGCAAGAAAGAGCAAA+GGG | - | chr5_3:31071790-31071809 | None:intergenic | 45.0% | |
| ACTCTCGCAAGAAAGAGCAA+AGG | - | chr5_3:31071791-31071810 | None:intergenic | 45.0% | |
| CTCTTTCTTGCGAGAGTTTG+TGG | + | chr5_3:31071794-31071813 | Msa0807820:CDS | 45.0% | |
| GCATAGATGAGATCCTGTTG+AGG | - | chr5_3:31071896-31071915 | None:intergenic | 45.0% | |
| AATCCAATGACCATGAGCAC+AGG | - | chr5_3:31072021-31072040 | None:intergenic | 45.0% | |
| GTCAAGGGGGTTGAAGAAAT+CGG | + | chr5_3:31072203-31072222 | Msa0807820:CDS | 45.0% | |
| GCATTTATGTCTTCAAGGGG+TGG | + | chr5_3:31072227-31072246 | Msa0807820:CDS | 45.0% | |
| CTACAGCCTTCATTCATGGA+TGG | + | chr5_3:31072317-31072336 | Msa0807820:CDS | 45.0% | |
| GGCGTTAGTTAACTAACGCA+TGG | - | chr5_3:31073440-31073459 | None:intergenic | 45.0% | |
| ACGGTATATTACGACACCAG+TGG | - | chr5_3:31073698-31073717 | None:intergenic | 45.0% | |
| GTGTCGTAATATACCGTGCA+AGG | + | chr5_3:31073701-31073720 | Msa0807820:intron | 45.0% | |
| ! | GCAGTGGCTTCTTGAACTTT+TGG | + | chr5_3:31074016-31074035 | Msa0807820:intron | 45.0% |
| ! | TTCTTGAACTTTTGGCACCG+AGG | + | chr5_3:31074024-31074043 | Msa0807820:CDS | 45.0% |
| TCACTGATCGCATTTCTCCT+CGG | - | chr5_3:31074044-31074063 | None:intergenic | 45.0% | |
| AGGCCAAGAAATACATGCCA+AGG | - | chr5_3:31074081-31074100 | None:intergenic | 45.0% | |
| GAAGCAGTGGTTGCTAAACG+CGG | + | chr5_3:31071544-31071563 | Msa0807820:five_prime_UTR | 50.0% | |
| GGATCTAAGAGCCAGGTTGT+CGG | + | chr5_3:31071650-31071669 | Msa0807820:five_prime_UTR | 50.0% | |
| GTGAGTGAGTGACTAGTGAG+AGG | + | chr5_3:31071698-31071717 | Msa0807820:five_prime_UTR | 50.0% | |
| GAGTAGTGAGGGAAAGACAG+TGG | - | chr5_3:31071768-31071787 | None:intergenic | 50.0% | |
| TCTTGTTCTCTTCTGGGCTC+TGG | + | chr5_3:31071832-31071851 | Msa0807820:CDS | 50.0% | |
| CAATGACCATGAGCACAGGA+TGG | - | chr5_3:31072017-31072036 | None:intergenic | 50.0% | |
| CATCCTGTGCTCATGGTCAT+TGG | + | chr5_3:31072015-31072034 | Msa0807820:CDS | 50.0% | |
| TTGGTGCATAGATGGTTGCC+TGG | + | chr5_3:31072180-31072199 | Msa0807820:CDS | 50.0% | |
| TGGTGCATAGATGGTTGCCT+GGG | + | chr5_3:31072181-31072200 | Msa0807820:CDS | 50.0% | |
| ATAGATGGTTGCCTGGGTCA+AGG | + | chr5_3:31072187-31072206 | Msa0807820:CDS | 50.0% | |
| TAGATGGTTGCCTGGGTCAA+GGG | + | chr5_3:31072188-31072207 | Msa0807820:CDS | 50.0% | |
| !! | AAGGGGTGGCTTTAGCTTCT+GGG | + | chr5_3:31072241-31072260 | Msa0807820:CDS | 50.0% |
| !! | TGTATCCCTCTTTGGAGCTC+AGG | + | chr5_3:31072350-31072369 | Msa0807820:CDS | 50.0% |
| ACTCACCTGAGCTCCAAAGA+GGG | - | chr5_3:31072358-31072377 | None:intergenic | 50.0% | |
| TACTCACCTGAGCTCCAAAG+AGG | - | chr5_3:31072359-31072378 | None:intergenic | 50.0% | |
| ! | ATGGGAGCGAAAAGTGCAGA+GGG | - | chr5_3:31073395-31073414 | None:intergenic | 50.0% |
| ! | CCAGCGTGAGTTAAGTTGCA+CGG | - | chr5_3:31073461-31073480 | None:intergenic | 50.0% |
| GCACAGCAATAACAAGGGGT+TGG | - | chr5_3:31073776-31073795 | None:intergenic | 50.0% | |
| !!! | ACGCAAGGGCATTTTTGGCA+TGG | + | chr5_3:31073883-31073902 | Msa0807820:intron | 50.0% |
| ! | AAGGCGCGAGTGAAAAGTGT+AGG | + | chr5_3:31073910-31073929 | Msa0807820:intron | 50.0% |
| ! | AGGCGCGAGTGAAAAGTGTA+GGG | + | chr5_3:31073911-31073930 | Msa0807820:intron | 50.0% |
| GAGGAGAAATGCGATCAGTG+AGG | + | chr5_3:31074043-31074062 | Msa0807820:CDS | 50.0% | |
| CATGGACTCAGTGCTGTGTT+TGG | - | chr5_3:31074187-31074206 | None:intergenic | 50.0% | |
| ! | CAAACACAGCACTGAGTCCA+TGG | + | chr5_3:31074185-31074204 | Msa0807820:exon | 50.0% |
| GTTGCTAAACGCGGCGACAA+CGG | + | chr5_3:31071553-31071572 | Msa0807820:five_prime_UTR | 55.0% | |
| GGTTCTCCATCCTGTGCTCA+TGG | + | chr5_3:31072008-31072027 | Msa0807820:intron | 55.0% | |
| AGATGGTTGCCTGGGTCAAG+GGG | + | chr5_3:31072189-31072208 | Msa0807820:CDS | 55.0% | |
| TTCTTCAACCCCCTTGACCC+AGG | - | chr5_3:31072201-31072220 | None:intergenic | 55.0% | |
| !! | CAAGGGGTGGCTTTAGCTTC+TGG | + | chr5_3:31072240-31072259 | Msa0807820:CDS | 55.0% |
| ! | TGGGAGCGAAAAGTGCAGAG+GGG | - | chr5_3:31073394-31073413 | None:intergenic | 55.0% |
| ! | GATGGGAGCGAAAAGTGCAG+AGG | - | chr5_3:31073396-31073415 | None:intergenic | 55.0% |
| CCGTGCAACTTAACTCACGC+TGG | + | chr5_3:31073458-31073477 | Msa0807820:intron | 55.0% | |
| ! | GGCGCGAGTGAAAAGTGTAG+GGG | + | chr5_3:31073912-31073931 | Msa0807820:intron | 55.0% |
| ! | GCGCGAGTGAAAAGTGTAGG+GGG | + | chr5_3:31073913-31073932 | Msa0807820:intron | 55.0% |
| ! | TGCATTGGCAGTAGCAACGG+CGG | + | chr5_3:31074110-31074129 | Msa0807820:CDS | 55.0% |
| CACTGAGGAGAGCAAGACCA+AGG | - | chr5_3:31074227-31074246 | None:intergenic | 55.0% | |
| !! | CTTGGTCTTGCTCTCCTCAG+TGG | + | chr5_3:31074225-31074244 | Msa0807820:three_prime_UTR | 55.0% |
| GATGGTTGCCTGGGTCAAGG+GGG | + | chr5_3:31072190-31072209 | Msa0807820:CDS | 60.0% | |
| GCAGTAGCAACGGCGGAAAC+TGG | + | chr5_3:31074117-31074136 | Msa0807820:CDS | 60.0% | |
| GCGGCGACAACGGTCAGATC+TGG | + | chr5_3:31071563-31071582 | Msa0807820:five_prime_UTR | 65.0% | |
| GTGGATGGCTGCCGACAACC+TGG | - | chr5_3:31071664-31071683 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 31071295 | 31074452 | 31071295 | ID=Msa0807820;Name=Msa0807820 |
| chr5_3 | mRNA | 31071295 | 31074452 | 31071295 | ID=Msa0807820-mRNA-1;Parent=Msa0807820;Name=Msa0807820-mRNA-1;_AED=0.24;_eAED=0.24;_QI=466|1|1|1|1|1|4|253|194 |
| chr5_3 | exon | 31071295 | 31071916 | 31071295 | ID=Msa0807820-mRNA-1:exon:10324;Parent=Msa0807820-mRNA-1 |
| chr5_3 | exon | 31072009 | 31072060 | 31072009 | ID=Msa0807820-mRNA-1:exon:10325;Parent=Msa0807820-mRNA-1 |
| chr5_3 | exon | 31072175 | 31072371 | 31072175 | ID=Msa0807820-mRNA-1:exon:10326;Parent=Msa0807820-mRNA-1 |
| chr5_3 | exon | 31074020 | 31074452 | 31074020 | ID=Msa0807820-mRNA-1:exon:10327;Parent=Msa0807820-mRNA-1 |
| chr5_3 | five_prime_UTR | 31071295 | 31071760 | 31071295 | ID=Msa0807820-mRNA-1:five_prime_utr;Parent=Msa0807820-mRNA-1 |
| chr5_3 | CDS | 31071761 | 31071916 | 31071761 | ID=Msa0807820-mRNA-1:cds;Parent=Msa0807820-mRNA-1 |
| chr5_3 | CDS | 31072009 | 31072060 | 31072009 | ID=Msa0807820-mRNA-1:cds;Parent=Msa0807820-mRNA-1 |
| chr5_3 | CDS | 31072175 | 31072371 | 31072175 | ID=Msa0807820-mRNA-1:cds;Parent=Msa0807820-mRNA-1 |
| chr5_3 | CDS | 31074020 | 31074199 | 31074020 | ID=Msa0807820-mRNA-1:cds;Parent=Msa0807820-mRNA-1 |
| chr5_3 | three_prime_UTR | 31074200 | 31074452 | 31074200 | ID=Msa0807820-mRNA-1:three_prime_utr;Parent=Msa0807820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
