Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233730 | XP_003593490.1 | 93.796 | 274 | 8 | 2 | 1 | 274 | 1 | 265 | 2.33e-180 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233730 | G7INX9 | 93.796 | 274 | 8 | 2 | 1 | 274 | 1 | 265 | 1.11e-180 | 506 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003720 | Msa0233730 | 0.809146 | 2.186148e-50 | -8.615850e-47 |
| Msa0081520 | Msa0233730 | 0.839585 | 1.450755e-57 | -8.615850e-47 |
| Msa0093850 | Msa0233730 | 0.829582 | 4.748653e-55 | -8.615850e-47 |
| Msa0094850 | Msa0233730 | 0.808108 | 3.642216e-50 | -8.615850e-47 |
| Msa0131900 | Msa0233730 | 0.805822 | 1.108580e-49 | -8.615850e-47 |
| Msa0136650 | Msa0233730 | 0.800464 | 1.423865e-48 | -8.615850e-47 |
| Msa0138360 | Msa0233730 | 0.815853 | 7.470125e-52 | -8.615850e-47 |
| Msa0144360 | Msa0233730 | 0.821955 | 3.065325e-53 | -8.615850e-47 |
| Msa0146280 | Msa0233730 | 0.808851 | 2.527366e-50 | -8.615850e-47 |
| Msa0173890 | Msa0233730 | 0.837300 | 5.638386e-57 | -8.615850e-47 |
| Msa0188890 | Msa0233730 | 0.801704 | 7.942825e-49 | -8.615850e-47 |
| Msa0191700 | Msa0233730 | 0.851609 | 7.938034e-61 | -8.615850e-47 |
| Msa0221000 | Msa0233730 | 0.816161 | 6.376990e-52 | -8.615850e-47 |
| Msa0231380 | Msa0233730 | 0.805481 | 1.307433e-49 | -8.615850e-47 |
| Msa0233730 | Msa0270660 | 0.803350 | 3.636258e-49 | -8.615850e-47 |
| Msa0233730 | Msa0277450 | 0.821159 | 4.682261e-53 | -8.615850e-47 |
| Msa0233730 | Msa0300270 | 0.811415 | 7.080295e-51 | -8.615850e-47 |
| Msa0233730 | Msa0300320 | 0.821298 | 4.348527e-53 | -8.615850e-47 |
| Msa0233730 | Msa0300690 | 0.801088 | 1.062078e-48 | -8.615850e-47 |
| Msa0233730 | Msa0312360 | 0.857012 | 2.180518e-62 | -8.615850e-47 |
| Msa0233730 | Msa0337700 | 0.822786 | 1.965771e-53 | -8.615850e-47 |
| Msa0233730 | Msa0341690 | 0.822093 | 2.847577e-53 | -8.615850e-47 |
| Msa0233730 | Msa0378720 | 0.829236 | 5.762439e-55 | -8.615850e-47 |
| Msa0233730 | Msa0428240 | 0.800916 | 1.151539e-48 | -8.615850e-47 |
| Msa0233730 | Msa0428370 | 0.803208 | 3.890608e-49 | -8.615850e-47 |
| Msa0233730 | Msa0430260 | 0.806149 | 9.464571e-50 | -8.615850e-47 |
| Msa0233730 | Msa0447370 | 0.806103 | 9.678129e-50 | -8.615850e-47 |
| Msa0233730 | Msa0474730 | 0.823510 | 1.332503e-53 | -8.615850e-47 |
| Msa0233730 | Msa0479170 | 0.820712 | 5.932603e-53 | -8.615850e-47 |
| Msa0233730 | Msa0479200 | 0.832110 | 1.139396e-55 | -8.615850e-47 |
| Msa0233730 | Msa0527190 | 0.819186 | 1.325752e-52 | -8.615850e-47 |
| Msa0233730 | Msa0573380 | 0.825553 | 4.403635e-54 | -8.615850e-47 |
| Msa0233730 | Msa0574890 | 0.801086 | 1.062937e-48 | -8.615850e-47 |
| Msa0233730 | Msa0597790 | 0.825156 | 5.465758e-54 | -8.615850e-47 |
| Msa0233730 | Msa0614930 | 0.807485 | 4.941046e-50 | -8.615850e-47 |
| Msa0233730 | Msa0626450 | 0.836474 | 9.161249e-57 | -8.615850e-47 |
| Msa0233730 | Msa0626490 | 0.836912 | 7.083176e-57 | -8.615850e-47 |
| Msa0233730 | Msa0626510 | 0.805363 | 1.384265e-49 | -8.615850e-47 |
| Msa0233730 | Msa0637560 | 0.809359 | 1.967383e-50 | -8.615850e-47 |
| Msa0233730 | Msa0637580 | 0.802138 | 6.468318e-49 | -8.615850e-47 |
| Msa0233730 | Msa0638480 | 0.826464 | 2.674700e-54 | -8.615850e-47 |
| Msa0233730 | Msa0663300 | 0.807089 | 5.993464e-50 | -8.615850e-47 |
| Msa0233730 | Msa0664060 | 0.804454 | 2.143650e-49 | -8.615850e-47 |
| Msa0233730 | Msa0664600 | 0.835295 | 1.823634e-56 | -8.615850e-47 |
| Msa0233730 | Msa0702340 | 0.800628 | 1.318010e-48 | -8.615850e-47 |
| Msa0233730 | Msa0702590 | 0.810059 | 1.391099e-50 | -8.615850e-47 |
| Msa0233730 | Msa0725000 | 0.808074 | 3.702544e-50 | -8.615850e-47 |
| Msa0233730 | Msa0729100 | 0.812467 | 4.177830e-51 | -8.615850e-47 |
| Msa0233730 | Msa0766930 | 0.807606 | 4.657105e-50 | -8.615850e-47 |
| Msa0233730 | Msa0788770 | 0.801389 | 9.216646e-49 | -8.615850e-47 |
| Msa0233730 | Msa0790610 | 0.805303 | 1.425033e-49 | -8.615850e-47 |
| Msa0233730 | Msa0807280 | 0.823888 | 1.086888e-53 | -8.615850e-47 |
| Msa0233730 | Msa0807820 | 0.822813 | 1.938012e-53 | -8.615850e-47 |
| Msa0233730 | Msa0845110 | 0.806993 | 6.281046e-50 | -8.615850e-47 |
| Msa0233730 | Msa0856050 | 0.807127 | 5.883981e-50 | -8.615850e-47 |
| Msa0233730 | Msa0861510 | 0.827292 | 1.696004e-54 | -8.615850e-47 |
| Msa0233730 | Msa0861600 | 0.824908 | 6.254959e-54 | -8.615850e-47 |
| Msa0233730 | Msa0866290 | 0.805238 | 1.470347e-49 | -8.615850e-47 |
| Msa0233730 | Msa1020510 | 0.806266 | 8.940046e-50 | -8.615850e-47 |
| Msa0233730 | Msa1048920 | 0.806187 | 9.289978e-50 | -8.615850e-47 |
| Msa0233730 | Msa1050910 | 0.818802 | 1.621021e-52 | -8.615850e-47 |
| Msa0233730 | Msa1066490 | 0.814428 | 1.548206e-51 | -8.615850e-47 |
| Msa0233730 | Msa1123380 | 0.801354 | 9.369304e-49 | -8.615850e-47 |
| Msa0233730 | Msa1124110 | 0.800666 | 1.294650e-48 | -8.615850e-47 |
| Msa0233730 | Msa1135270 | 0.807315 | 5.367990e-50 | -8.615850e-47 |
| Msa0233730 | Msa1174530 | 0.846705 | 1.835888e-59 | -8.615850e-47 |
| Msa0233730 | Msa1208160 | 0.802817 | 4.686123e-49 | -8.615850e-47 |
| Msa0233730 | Msa1224840 | 0.807251 | 5.538910e-50 | -8.615850e-47 |
| Msa0233730 | Msa1235250 | 0.823355 | 1.448572e-53 | -8.615850e-47 |
| Msa0233730 | Msa1276660 | 0.840021 | 1.117447e-57 | -8.615850e-47 |
| Msa0233730 | Msa1277490 | 0.812115 | 4.986503e-51 | -8.615850e-47 |
| Msa0233730 | Msa1298370 | 0.806951 | 6.411265e-50 | -8.615850e-47 |
| Msa0233730 | Msa1356830 | 0.814969 | 1.175342e-51 | -8.615850e-47 |
| Msa0233730 | Msa1369150 | 0.811478 | 6.863576e-51 | -8.615850e-47 |
| Msa0233730 | Msa1371520 | 0.819227 | 1.297137e-52 | -8.615850e-47 |
| Msa0233730 | Msa1374060 | 0.808124 | 3.613307e-50 | -8.615850e-47 |
| Msa0233730 | Msa1386690 | 0.804853 | 1.769208e-49 | -8.615850e-47 |
| Msa0233730 | Msa1386710 | 0.820720 | 5.908561e-53 | -8.615850e-47 |
| Msa0233730 | Msa1404170 | 0.866719 | 2.321088e-65 | -8.615850e-47 |
| Msa0233730 | Msa1423350 | 0.801235 | 9.909600e-49 | -8.615850e-47 |
| Msa0233730 | Msa1425880 | 0.803407 | 3.538066e-49 | -8.615850e-47 |
| Msa0233730 | Msa1437940 | 0.820512 | 6.597595e-53 | -8.615850e-47 |
| Msa0233730 | Msa1439610 | 0.812647 | 3.815439e-51 | -8.615850e-47 |
| Msa0233730 | Msa1440960 | 0.827652 | 1.390118e-54 | -8.615850e-47 |
| Msa0233730 | Msa1443930 | 0.822460 | 2.341225e-53 | -8.615850e-47 |
| Msa0233730 | Msa1446810 | 0.805736 | 1.156156e-49 | -8.615850e-47 |
| Msa0233730 | Msa1459460 | 0.800901 | 1.159628e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233730 | MtrunA17_Chr2g0281521 | 93.796 | 274 | 8 | 2 | 1 | 274 | 1 | 265 | 0.0 | 506 |
| Msa0233730 | MtrunA17_Chr4g0047911 | 43.103 | 290 | 112 | 14 | 1 | 274 | 1 | 253 | 6.58e-44 | 149 |
| Msa0233730 | MtrunA17_Chr2g0323991 | 30.915 | 317 | 138 | 13 | 1 | 274 | 1 | 279 | 3.80e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233730 | AT1G11125.1 | 34.202 | 307 | 127 | 14 | 1 | 274 | 1 | 265 | 4.20e-20 | 87.4 |
| Msa0233730 | AT1G61170.1 | 38.298 | 188 | 86 | 5 | 92 | 274 | 89 | 251 | 6.60e-16 | 75.9 |
Find 72 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTTGGTTTCTTCCATT+TGG | 0.164688 | 2_2:-6139962 | None:intergenic |
| GAAATTTGATAGAGAGAATA+AGG | 0.211062 | 2_2:+6140023 | Msa0233730:CDS |
| TCATTTGGTTTCTTCCATTT+GGG | 0.279406 | 2_2:-6139961 | None:intergenic |
| ATTCAACAGTGGAGAGTAAA+TGG | 0.305564 | 2_2:+6140529 | Msa0233730:CDS |
| AGAGACGCCGGCGAAGTTTC+CGG | 0.307275 | 2_2:+6140360 | Msa0233730:CDS |
| GGAGAACGGTGGCCGGAAAA+TGG | 0.313036 | 2_2:+6140503 | Msa0233730:CDS |
| GGAAAATCCACTTGTGTCAT+TGG | 0.355990 | 2_2:+6140578 | Msa0233730:CDS |
| GATCTCATCAACTTTATAGA+AGG | 0.365710 | 2_2:-6140055 | None:intergenic |
| AAGGCTGTTCTTCCCTTTCC+CGG | 0.367623 | 2_2:-6140477 | None:intergenic |
| TTAACTGTTTCTTCTTCAAC+AGG | 0.384629 | 2_2:-6139919 | None:intergenic |
| TTCTTCCCTTTCCCGGCGAT+TGG | 0.384873 | 2_2:-6140470 | None:intergenic |
| TCATATCTAAACCTTTCATT+TGG | 0.387597 | 2_2:-6139976 | None:intergenic |
| AAAGGGAAGAACAGCCTTGC+CGG | 0.391214 | 2_2:+6140482 | Msa0233730:CDS |
| CTCTCTTCTCTCACCGGAAA+AGG | 0.407732 | 2_2:-6140208 | None:intergenic |
| TGTGAAATGCTAGATCTTGA+TGG | 0.410155 | 2_2:-6139859 | None:intergenic |
| TGTTCAGAGGAGAGATCAAA+TGG | 0.422598 | 2_2:+6140305 | Msa0233730:CDS |
| AAGTTTCCGGCCGACGATCT+AGG | 0.423459 | 2_2:+6140373 | Msa0233730:CDS |
| GACTCATCATTAGCTGTAGA+TGG | 0.427911 | 2_2:-6140552 | None:intergenic |
| TCAAATTTCTCAAAACACTT+TGG | 0.432970 | 2_2:-6140009 | None:intergenic |
| GACTGCTCCGACCTTCTTGC+CGG | 0.434939 | 2_2:-6140249 | None:intergenic |
| AGGAAGAAGAATCTTGCAAA+AGG | 0.438874 | 2_2:+6140148 | Msa0233730:CDS |
| AAACTTCGCCGGCGTCTCTC+CGG | 0.444786 | 2_2:-6140356 | None:intergenic |
| AGGAGAGATCAAATGGGAAA+TGG | 0.445282 | 2_2:+6140312 | Msa0233730:CDS |
| AACAAACCAATCGCCGGGAA+AGG | 0.459022 | 2_2:+6140464 | Msa0233730:CDS |
| CTCCGGCGAAAAGGAATGTT+GGG | 0.469114 | 2_2:+6140271 | Msa0233730:CDS |
| CCGGCCACCGTTCTCCGGCA+AGG | 0.474190 | 2_2:-6140496 | None:intergenic |
| ACAAACCAATCGCCGGGAAA+GGG | 0.476850 | 2_2:+6140465 | Msa0233730:CDS |
| AAGAAGGTCGGAGCAGTCTC+CGG | 0.487899 | 2_2:+6140254 | Msa0233730:CDS |
| CGGAGCAGTCTCCGGCGAAA+AGG | 0.493736 | 2_2:+6140262 | Msa0233730:CDS |
| CTTGCCGGCGACTTTCTCGC+CGG | 0.497162 | 2_2:-6140234 | None:intergenic |
| TACAGCTAATGATGAGTCAC+TGG | 0.507954 | 2_2:+6140557 | Msa0233730:CDS |
| TGTTGTCAGAAACACCCAAA+TGG | 0.517393 | 2_2:+6139947 | Msa0233730:CDS |
| TCTCCGGCGAAAAGGAATGT+TGG | 0.528330 | 2_2:+6140270 | Msa0233730:CDS |
| GAATGAAGAATCAGCCTCAC+CGG | 0.529905 | 2_2:+6140337 | Msa0233730:CDS |
| TGTTGAAGAAGAAACAGTTA+AGG | 0.531213 | 2_2:+6139921 | Msa0233730:CDS |
| CCTTGCCGGAGAACGGTGGC+CGG | 0.531831 | 2_2:+6140496 | Msa0233730:CDS |
| CGGTGAGAGAAGAGAGTCTC+CGG | 0.532502 | 2_2:+6140215 | Msa0233730:CDS |
| CAGCCTCACCGGAGAGACGC+CGG | 0.541053 | 2_2:+6140348 | Msa0233730:CDS |
| AGGAAAACAAACCAATCGCC+GGG | 0.548205 | 2_2:+6140459 | Msa0233730:CDS |
| AGAACAGCCTTGCCGGAGAA+CGG | 0.548840 | 2_2:+6140489 | Msa0233730:CDS |
| TCGTCGGCCGGAAACTTCGC+CGG | 0.554308 | 2_2:-6140367 | None:intergenic |
| CGAGAAAGTCGCCGGCAAGA+AGG | 0.555971 | 2_2:+6140238 | Msa0233730:CDS |
| GGAAGAAGAATCTTGCAAAA+GGG | 0.556806 | 2_2:+6140149 | Msa0233730:CDS |
| GTCTCCGGCGAGAAAGTCGC+CGG | 0.564723 | 2_2:+6140230 | Msa0233730:CDS |
| AAGGAAAACAAACCAATCGC+CGG | 0.566599 | 2_2:+6140458 | Msa0233730:CDS |
| AGAGATCAAATGGGAAATGG+AGG | 0.567817 | 2_2:+6140315 | Msa0233730:CDS |
| AATGGAAGAAACCAAATGAA+AGG | 0.569819 | 2_2:+6139965 | Msa0233730:CDS |
| CCATTGTCAGTACGAGTAGC+CGG | 0.570807 | 2_2:-6140399 | None:intergenic |
| TCTAGCATTTCACAAGTGAA+AGG | 0.573120 | 2_2:+6139868 | Msa0233730:CDS |
| TGAGATCTCTGAAGTTTCTG+AGG | 0.573729 | 2_2:+6140071 | Msa0233730:CDS |
| TGGTTCAACGAGATCTGTCG+TGG | 0.573822 | 2_2:+6140419 | Msa0233730:CDS |
| GTTCAGAGGAGAGATCAAAT+GGG | 0.576457 | 2_2:+6140306 | Msa0233730:CDS |
| CGGAGACTCTCTTCTCTCAC+CGG | 0.579715 | 2_2:-6140214 | None:intergenic |
| CAACGAGATCTGTCGTGGGT+CGG | 0.580336 | 2_2:+6140424 | Msa0233730:CDS |
| CGGCCGACGATCTAGGTCGC+CGG | 0.588380 | 2_2:+6140380 | Msa0233730:CDS |
| AAGCATTCCAATGACACAAG+TGG | 0.592757 | 2_2:-6140585 | None:intergenic |
| CCGGCTACTCGTACTGACAA+TGG | 0.600535 | 2_2:+6140399 | Msa0233730:CDS |
| GAATCTTGCAAAAGGGTCAA+CGG | 0.602033 | 2_2:+6140156 | Msa0233730:CDS |
| AAAGTCGCCGGCAAGAAGGT+CGG | 0.608055 | 2_2:+6140242 | Msa0233730:CDS |
| GGCGAAAAGGAATGTTGGGT+CGG | 0.609373 | 2_2:+6140275 | Msa0233730:CDS |
| TTTCACTGATAAGAGAGAAG+AGG | 0.609523 | 2_2:+6140128 | Msa0233730:CDS |
| CGGCGACCTAGATCGTCGGC+CGG | 0.611451 | 2_2:-6140379 | None:intergenic |
| TCGCCGGCGTCTCTCCGGTG+AGG | 0.626235 | 2_2:-6140351 | None:intergenic |
| TCTTCTTCAACAGGAACACA+AGG | 0.632166 | 2_2:-6139910 | None:intergenic |
| TGGGTCGGAGCTTATCTGCA+AGG | 0.638945 | 2_2:+6140439 | Msa0233730:CDS |
| GGTCGGCGAGGATTGTTCAG+AGG | 0.639198 | 2_2:+6140292 | Msa0233730:CDS |
| TAGCCGGCGACCTAGATCGT+CGG | 0.649338 | 2_2:-6140383 | None:intergenic |
| ACAGCCTTGCCGGAGAACGG+TGG | 0.649383 | 2_2:+6140492 | Msa0233730:CDS |
| AAAGGAATGTTGGGTCGGCG+AGG | 0.657766 | 2_2:+6140280 | Msa0233730:CDS |
| TCTTCAACAGGAACACAAGG+TGG | 0.671847 | 2_2:-6139907 | None:intergenic |
| GAAAATGGAAAATTCAACAG+TGG | 0.675684 | 2_2:+6140518 | Msa0233730:CDS |
| GGTTCAACGAGATCTGTCGT+GGG | 0.679453 | 2_2:+6140420 | Msa0233730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAAATCATTGTGTTTTGT+TGG | - | chr2_2:6139838-6139857 | None:intergenic | 25.0% |
| ! | TCATATCTAAACCTTTCATT+TGG | - | chr2_2:6139979-6139998 | None:intergenic | 25.0% |
| ! | TCAAATTTCTCAAAACACTT+TGG | - | chr2_2:6140012-6140031 | None:intergenic | 25.0% |
| ! | GAAATTTGATAGAGAGAATA+AGG | + | chr2_2:6140023-6140042 | Msa0233730:CDS | 25.0% |
| !! | TGAAAATCATTGTGTTTTGT+TGG | - | chr2_2:6139838-6139857 | None:intergenic | 25.0% |
| ! | TCATATCTAAACCTTTCATT+TGG | - | chr2_2:6139979-6139998 | None:intergenic | 25.0% |
| ! | TCAAATTTCTCAAAACACTT+TGG | - | chr2_2:6140012-6140031 | None:intergenic | 25.0% |
| ! | GAAATTTGATAGAGAGAATA+AGG | + | chr2_2:6140023-6140042 | Msa0233730:CDS | 25.0% |
| !! | AAATCATTGTGTTTTGTTGG+TGG | - | chr2_2:6139835-6139854 | None:intergenic | 30.0% |
| ! | TTAACTGTTTCTTCTTCAAC+AGG | - | chr2_2:6139922-6139941 | None:intergenic | 30.0% |
| TGTTGAAGAAGAAACAGTTA+AGG | + | chr2_2:6139921-6139940 | Msa0233730:CDS | 30.0% | |
| ! | TCATTTGGTTTCTTCCATTT+GGG | - | chr2_2:6139964-6139983 | None:intergenic | 30.0% |
| ! | TTCATTTGGTTTCTTCCATT+TGG | - | chr2_2:6139965-6139984 | None:intergenic | 30.0% |
| AATGGAAGAAACCAAATGAA+AGG | + | chr2_2:6139965-6139984 | Msa0233730:CDS | 30.0% | |
| GATCTCATCAACTTTATAGA+AGG | - | chr2_2:6140058-6140077 | None:intergenic | 30.0% | |
| ! | CTGTTGAATTTTCCATTTTC+CGG | - | chr2_2:6140518-6140537 | None:intergenic | 30.0% |
| GAAAATGGAAAATTCAACAG+TGG | + | chr2_2:6140518-6140537 | Msa0233730:CDS | 30.0% | |
| !! | AAATCATTGTGTTTTGTTGG+TGG | - | chr2_2:6139835-6139854 | None:intergenic | 30.0% |
| ! | TTAACTGTTTCTTCTTCAAC+AGG | - | chr2_2:6139922-6139941 | None:intergenic | 30.0% |
| TGTTGAAGAAGAAACAGTTA+AGG | + | chr2_2:6139921-6139940 | Msa0233730:CDS | 30.0% | |
| ! | TCATTTGGTTTCTTCCATTT+GGG | - | chr2_2:6139964-6139983 | None:intergenic | 30.0% |
| ! | TTCATTTGGTTTCTTCCATT+TGG | - | chr2_2:6139965-6139984 | None:intergenic | 30.0% |
| AATGGAAGAAACCAAATGAA+AGG | + | chr2_2:6139965-6139984 | Msa0233730:CDS | 30.0% | |
| GATCTCATCAACTTTATAGA+AGG | - | chr2_2:6140058-6140077 | None:intergenic | 30.0% | |
| ! | CTGTTGAATTTTCCATTTTC+CGG | - | chr2_2:6140518-6140537 | None:intergenic | 30.0% |
| GAAAATGGAAAATTCAACAG+TGG | + | chr2_2:6140518-6140537 | Msa0233730:CDS | 30.0% | |
| TGTGAAATGCTAGATCTTGA+TGG | - | chr2_2:6139862-6139881 | None:intergenic | 35.0% | |
| TCTAGCATTTCACAAGTGAA+AGG | + | chr2_2:6139868-6139887 | Msa0233730:CDS | 35.0% | |
| TTTCACTGATAAGAGAGAAG+AGG | + | chr2_2:6140128-6140147 | Msa0233730:CDS | 35.0% | |
| AGGAAGAAGAATCTTGCAAA+AGG | + | chr2_2:6140148-6140167 | Msa0233730:CDS | 35.0% | |
| GGAAGAAGAATCTTGCAAAA+GGG | + | chr2_2:6140149-6140168 | Msa0233730:CDS | 35.0% | |
| !! | ACCATTTTTGCACATTTTCG+CGG | - | chr2_2:6140187-6140206 | None:intergenic | 35.0% |
| ! | TGCAAAAATGGTTCCTTTTC+CGG | + | chr2_2:6140195-6140214 | Msa0233730:CDS | 35.0% |
| ATTCAACAGTGGAGAGTAAA+TGG | + | chr2_2:6140529-6140548 | Msa0233730:CDS | 35.0% | |
| TGTGAAATGCTAGATCTTGA+TGG | - | chr2_2:6139862-6139881 | None:intergenic | 35.0% | |
| TCTAGCATTTCACAAGTGAA+AGG | + | chr2_2:6139868-6139887 | Msa0233730:CDS | 35.0% | |
| TTTCACTGATAAGAGAGAAG+AGG | + | chr2_2:6140128-6140147 | Msa0233730:CDS | 35.0% | |
| AGGAAGAAGAATCTTGCAAA+AGG | + | chr2_2:6140148-6140167 | Msa0233730:CDS | 35.0% | |
| GGAAGAAGAATCTTGCAAAA+GGG | + | chr2_2:6140149-6140168 | Msa0233730:CDS | 35.0% | |
| !! | ACCATTTTTGCACATTTTCG+CGG | - | chr2_2:6140187-6140206 | None:intergenic | 35.0% |
| ! | TGCAAAAATGGTTCCTTTTC+CGG | + | chr2_2:6140195-6140214 | Msa0233730:CDS | 35.0% |
| ATTCAACAGTGGAGAGTAAA+TGG | + | chr2_2:6140529-6140548 | Msa0233730:CDS | 35.0% | |
| TCTTCTTCAACAGGAACACA+AGG | - | chr2_2:6139913-6139932 | None:intergenic | 40.0% | |
| TGTTGTCAGAAACACCCAAA+TGG | + | chr2_2:6139947-6139966 | Msa0233730:CDS | 40.0% | |
| !! | TGAGATCTCTGAAGTTTCTG+AGG | + | chr2_2:6140071-6140090 | Msa0233730:CDS | 40.0% |
| GAATCTTGCAAAAGGGTCAA+CGG | + | chr2_2:6140156-6140175 | Msa0233730:CDS | 40.0% | |
| !! | CCATTTTTGCACATTTTCGC+GGG | - | chr2_2:6140186-6140205 | None:intergenic | 40.0% |
| TGTTCAGAGGAGAGATCAAA+TGG | + | chr2_2:6140305-6140324 | Msa0233730:CDS | 40.0% | |
| GTTCAGAGGAGAGATCAAAT+GGG | + | chr2_2:6140306-6140325 | Msa0233730:CDS | 40.0% | |
| AGGAGAGATCAAATGGGAAA+TGG | + | chr2_2:6140312-6140331 | Msa0233730:CDS | 40.0% | |
| AGAGATCAAATGGGAAATGG+AGG | + | chr2_2:6140315-6140334 | Msa0233730:CDS | 40.0% | |
| AAGGAAAACAAACCAATCGC+CGG | + | chr2_2:6140458-6140477 | Msa0233730:CDS | 40.0% | |
| GACTCATCATTAGCTGTAGA+TGG | - | chr2_2:6140555-6140574 | None:intergenic | 40.0% | |
| TACAGCTAATGATGAGTCAC+TGG | + | chr2_2:6140557-6140576 | Msa0233730:CDS | 40.0% | |
| GGAAAATCCACTTGTGTCAT+TGG | + | chr2_2:6140578-6140597 | Msa0233730:CDS | 40.0% | |
| AAGCATTCCAATGACACAAG+TGG | - | chr2_2:6140588-6140607 | None:intergenic | 40.0% | |
| TCTTCTTCAACAGGAACACA+AGG | - | chr2_2:6139913-6139932 | None:intergenic | 40.0% | |
| TGTTGTCAGAAACACCCAAA+TGG | + | chr2_2:6139947-6139966 | Msa0233730:CDS | 40.0% | |
| !! | TGAGATCTCTGAAGTTTCTG+AGG | + | chr2_2:6140071-6140090 | Msa0233730:CDS | 40.0% |
| GAATCTTGCAAAAGGGTCAA+CGG | + | chr2_2:6140156-6140175 | Msa0233730:CDS | 40.0% | |
| !! | CCATTTTTGCACATTTTCGC+GGG | - | chr2_2:6140186-6140205 | None:intergenic | 40.0% |
| TGTTCAGAGGAGAGATCAAA+TGG | + | chr2_2:6140305-6140324 | Msa0233730:CDS | 40.0% | |
| GTTCAGAGGAGAGATCAAAT+GGG | + | chr2_2:6140306-6140325 | Msa0233730:CDS | 40.0% | |
| AGGAGAGATCAAATGGGAAA+TGG | + | chr2_2:6140312-6140331 | Msa0233730:CDS | 40.0% | |
| AGAGATCAAATGGGAAATGG+AGG | + | chr2_2:6140315-6140334 | Msa0233730:CDS | 40.0% | |
| AAGGAAAACAAACCAATCGC+CGG | + | chr2_2:6140458-6140477 | Msa0233730:CDS | 40.0% | |
| GACTCATCATTAGCTGTAGA+TGG | - | chr2_2:6140555-6140574 | None:intergenic | 40.0% | |
| TACAGCTAATGATGAGTCAC+TGG | + | chr2_2:6140557-6140576 | Msa0233730:CDS | 40.0% | |
| GGAAAATCCACTTGTGTCAT+TGG | + | chr2_2:6140578-6140597 | Msa0233730:CDS | 40.0% | |
| AAGCATTCCAATGACACAAG+TGG | - | chr2_2:6140588-6140607 | None:intergenic | 40.0% | |
| TCTTCAACAGGAACACAAGG+TGG | - | chr2_2:6139910-6139929 | None:intergenic | 45.0% | |
| CCCGCGAAAATGTGCAAAAA+TGG | + | chr2_2:6140183-6140202 | Msa0233730:CDS | 45.0% | |
| GAATGAAGAATCAGCCTCAC+CGG | + | chr2_2:6140337-6140356 | Msa0233730:CDS | 45.0% | |
| AGGAAAACAAACCAATCGCC+GGG | + | chr2_2:6140459-6140478 | Msa0233730:CDS | 45.0% | |
| TCTTCAACAGGAACACAAGG+TGG | - | chr2_2:6139910-6139929 | None:intergenic | 45.0% | |
| CCCGCGAAAATGTGCAAAAA+TGG | + | chr2_2:6140183-6140202 | Msa0233730:CDS | 45.0% | |
| GAATGAAGAATCAGCCTCAC+CGG | + | chr2_2:6140337-6140356 | Msa0233730:CDS | 45.0% | |
| AGGAAAACAAACCAATCGCC+GGG | + | chr2_2:6140459-6140478 | Msa0233730:CDS | 45.0% | |
| CTCTCTTCTCTCACCGGAAA+AGG | - | chr2_2:6140211-6140230 | None:intergenic | 50.0% | |
| TCTCCGGCGAAAAGGAATGT+TGG | + | chr2_2:6140270-6140289 | Msa0233730:CDS | 50.0% | |
| CTCCGGCGAAAAGGAATGTT+GGG | + | chr2_2:6140271-6140290 | Msa0233730:CDS | 50.0% | |
| ! | GACCCAACATTCCTTTTCGC+CGG | - | chr2_2:6140276-6140295 | None:intergenic | 50.0% |
| GGCGAAAAGGAATGTTGGGT+CGG | + | chr2_2:6140275-6140294 | Msa0233730:CDS | 50.0% | |
| CCATTGTCAGTACGAGTAGC+CGG | - | chr2_2:6140402-6140421 | None:intergenic | 50.0% | |
| TGGTTCAACGAGATCTGTCG+TGG | + | chr2_2:6140419-6140438 | Msa0233730:CDS | 50.0% | |
| GGTTCAACGAGATCTGTCGT+GGG | + | chr2_2:6140420-6140439 | Msa0233730:CDS | 50.0% | |
| AACAAACCAATCGCCGGGAA+AGG | + | chr2_2:6140464-6140483 | Msa0233730:CDS | 50.0% | |
| ACAAACCAATCGCCGGGAAA+GGG | + | chr2_2:6140465-6140484 | Msa0233730:CDS | 50.0% | |
| AAGGCTGTTCTTCCCTTTCC+CGG | - | chr2_2:6140480-6140499 | None:intergenic | 50.0% | |
| AAAGGGAAGAACAGCCTTGC+CGG | + | chr2_2:6140482-6140501 | Msa0233730:CDS | 50.0% | |
| CTCTCTTCTCTCACCGGAAA+AGG | - | chr2_2:6140211-6140230 | None:intergenic | 50.0% | |
| TCTCCGGCGAAAAGGAATGT+TGG | + | chr2_2:6140270-6140289 | Msa0233730:CDS | 50.0% | |
| CTCCGGCGAAAAGGAATGTT+GGG | + | chr2_2:6140271-6140290 | Msa0233730:CDS | 50.0% | |
| ! | GACCCAACATTCCTTTTCGC+CGG | - | chr2_2:6140276-6140295 | None:intergenic | 50.0% |
| GGCGAAAAGGAATGTTGGGT+CGG | + | chr2_2:6140275-6140294 | Msa0233730:CDS | 50.0% | |
| CCATTGTCAGTACGAGTAGC+CGG | - | chr2_2:6140402-6140421 | None:intergenic | 50.0% | |
| TGGTTCAACGAGATCTGTCG+TGG | + | chr2_2:6140419-6140438 | Msa0233730:CDS | 50.0% | |
| GGTTCAACGAGATCTGTCGT+GGG | + | chr2_2:6140420-6140439 | Msa0233730:CDS | 50.0% | |
| AACAAACCAATCGCCGGGAA+AGG | + | chr2_2:6140464-6140483 | Msa0233730:CDS | 50.0% | |
| ACAAACCAATCGCCGGGAAA+GGG | + | chr2_2:6140465-6140484 | Msa0233730:CDS | 50.0% | |
| AAGGCTGTTCTTCCCTTTCC+CGG | - | chr2_2:6140480-6140499 | None:intergenic | 50.0% | |
| AAAGGGAAGAACAGCCTTGC+CGG | + | chr2_2:6140482-6140501 | Msa0233730:CDS | 50.0% | |
| CGGAGACTCTCTTCTCTCAC+CGG | - | chr2_2:6140217-6140236 | None:intergenic | 55.0% | |
| CGGTGAGAGAAGAGAGTCTC+CGG | + | chr2_2:6140215-6140234 | Msa0233730:CDS | 55.0% | |
| AAAGTCGCCGGCAAGAAGGT+CGG | + | chr2_2:6140242-6140261 | Msa0233730:CDS | 55.0% | |
| AAGAAGGTCGGAGCAGTCTC+CGG | + | chr2_2:6140254-6140273 | Msa0233730:CDS | 55.0% | |
| AAAGGAATGTTGGGTCGGCG+AGG | + | chr2_2:6140280-6140299 | Msa0233730:CDS | 55.0% | |
| AAGTTTCCGGCCGACGATCT+AGG | + | chr2_2:6140373-6140392 | Msa0233730:CDS | 55.0% | |
| ! | CCGGCTACTCGTACTGACAA+TGG | + | chr2_2:6140399-6140418 | Msa0233730:CDS | 55.0% |
| CAACGAGATCTGTCGTGGGT+CGG | + | chr2_2:6140424-6140443 | Msa0233730:CDS | 55.0% | |
| TGGGTCGGAGCTTATCTGCA+AGG | + | chr2_2:6140439-6140458 | Msa0233730:CDS | 55.0% | |
| TTCTTCCCTTTCCCGGCGAT+TGG | - | chr2_2:6140473-6140492 | None:intergenic | 55.0% | |
| AGAACAGCCTTGCCGGAGAA+CGG | + | chr2_2:6140489-6140508 | Msa0233730:CDS | 55.0% | |
| ! | ATTTTCCGGCCACCGTTCTC+CGG | - | chr2_2:6140504-6140523 | None:intergenic | 55.0% |
| CGGAGACTCTCTTCTCTCAC+CGG | - | chr2_2:6140217-6140236 | None:intergenic | 55.0% | |
| CGGTGAGAGAAGAGAGTCTC+CGG | + | chr2_2:6140215-6140234 | Msa0233730:CDS | 55.0% | |
| AAAGTCGCCGGCAAGAAGGT+CGG | + | chr2_2:6140242-6140261 | Msa0233730:CDS | 55.0% | |
| AAGAAGGTCGGAGCAGTCTC+CGG | + | chr2_2:6140254-6140273 | Msa0233730:CDS | 55.0% | |
| AAAGGAATGTTGGGTCGGCG+AGG | + | chr2_2:6140280-6140299 | Msa0233730:CDS | 55.0% | |
| AAGTTTCCGGCCGACGATCT+AGG | + | chr2_2:6140373-6140392 | Msa0233730:CDS | 55.0% | |
| ! | CCGGCTACTCGTACTGACAA+TGG | + | chr2_2:6140399-6140418 | Msa0233730:CDS | 55.0% |
| CAACGAGATCTGTCGTGGGT+CGG | + | chr2_2:6140424-6140443 | Msa0233730:CDS | 55.0% | |
| TGGGTCGGAGCTTATCTGCA+AGG | + | chr2_2:6140439-6140458 | Msa0233730:CDS | 55.0% | |
| TTCTTCCCTTTCCCGGCGAT+TGG | - | chr2_2:6140473-6140492 | None:intergenic | 55.0% | |
| AGAACAGCCTTGCCGGAGAA+CGG | + | chr2_2:6140489-6140508 | Msa0233730:CDS | 55.0% | |
| ! | ATTTTCCGGCCACCGTTCTC+CGG | - | chr2_2:6140504-6140523 | None:intergenic | 55.0% |
| CGAGAAAGTCGCCGGCAAGA+AGG | + | chr2_2:6140238-6140257 | Msa0233730:CDS | 60.0% | |
| GACTGCTCCGACCTTCTTGC+CGG | - | chr2_2:6140252-6140271 | None:intergenic | 60.0% | |
| GGTCGGCGAGGATTGTTCAG+AGG | + | chr2_2:6140292-6140311 | Msa0233730:CDS | 60.0% | |
| AAACTTCGCCGGCGTCTCTC+CGG | - | chr2_2:6140359-6140378 | None:intergenic | 60.0% | |
| AGAGACGCCGGCGAAGTTTC+CGG | + | chr2_2:6140360-6140379 | Msa0233730:CDS | 60.0% | |
| TAGCCGGCGACCTAGATCGT+CGG | - | chr2_2:6140386-6140405 | None:intergenic | 60.0% | |
| GGAGAACGGTGGCCGGAAAA+TGG | + | chr2_2:6140503-6140522 | Msa0233730:CDS | 60.0% | |
| CGAGAAAGTCGCCGGCAAGA+AGG | + | chr2_2:6140238-6140257 | Msa0233730:CDS | 60.0% | |
| GACTGCTCCGACCTTCTTGC+CGG | - | chr2_2:6140252-6140271 | None:intergenic | 60.0% | |
| GGTCGGCGAGGATTGTTCAG+AGG | + | chr2_2:6140292-6140311 | Msa0233730:CDS | 60.0% | |
| AAACTTCGCCGGCGTCTCTC+CGG | - | chr2_2:6140359-6140378 | None:intergenic | 60.0% | |
| AGAGACGCCGGCGAAGTTTC+CGG | + | chr2_2:6140360-6140379 | Msa0233730:CDS | 60.0% | |
| TAGCCGGCGACCTAGATCGT+CGG | - | chr2_2:6140386-6140405 | None:intergenic | 60.0% | |
| GGAGAACGGTGGCCGGAAAA+TGG | + | chr2_2:6140503-6140522 | Msa0233730:CDS | 60.0% | |
| GTCTCCGGCGAGAAAGTCGC+CGG | + | chr2_2:6140230-6140249 | Msa0233730:CDS | 65.0% | |
| CTTGCCGGCGACTTTCTCGC+CGG | - | chr2_2:6140237-6140256 | None:intergenic | 65.0% | |
| CGGAGCAGTCTCCGGCGAAA+AGG | + | chr2_2:6140262-6140281 | Msa0233730:CDS | 65.0% | |
| TCGTCGGCCGGAAACTTCGC+CGG | - | chr2_2:6140370-6140389 | None:intergenic | 65.0% | |
| ACAGCCTTGCCGGAGAACGG+TGG | + | chr2_2:6140492-6140511 | Msa0233730:CDS | 65.0% | |
| GTCTCCGGCGAGAAAGTCGC+CGG | + | chr2_2:6140230-6140249 | Msa0233730:CDS | 65.0% | |
| CTTGCCGGCGACTTTCTCGC+CGG | - | chr2_2:6140237-6140256 | None:intergenic | 65.0% | |
| CGGAGCAGTCTCCGGCGAAA+AGG | + | chr2_2:6140262-6140281 | Msa0233730:CDS | 65.0% | |
| TCGTCGGCCGGAAACTTCGC+CGG | - | chr2_2:6140370-6140389 | None:intergenic | 65.0% | |
| ACAGCCTTGCCGGAGAACGG+TGG | + | chr2_2:6140492-6140511 | Msa0233730:CDS | 65.0% | |
| CAGCCTCACCGGAGAGACGC+CGG | + | chr2_2:6140348-6140367 | Msa0233730:CDS | 70.0% | |
| CGGCGACCTAGATCGTCGGC+CGG | - | chr2_2:6140382-6140401 | None:intergenic | 70.0% | |
| CGGCCGACGATCTAGGTCGC+CGG | + | chr2_2:6140380-6140399 | Msa0233730:CDS | 70.0% | |
| CCTTGCCGGAGAACGGTGGC+CGG | + | chr2_2:6140496-6140515 | Msa0233730:CDS | 70.0% | |
| CAGCCTCACCGGAGAGACGC+CGG | + | chr2_2:6140348-6140367 | Msa0233730:CDS | 70.0% | |
| CGGCGACCTAGATCGTCGGC+CGG | - | chr2_2:6140382-6140401 | None:intergenic | 70.0% | |
| CGGCCGACGATCTAGGTCGC+CGG | + | chr2_2:6140380-6140399 | Msa0233730:CDS | 70.0% | |
| CCTTGCCGGAGAACGGTGGC+CGG | + | chr2_2:6140496-6140515 | Msa0233730:CDS | 70.0% | |
| TCGCCGGCGTCTCTCCGGTG+AGG | - | chr2_2:6140354-6140373 | None:intergenic | 75.0% | |
| CCGGCCACCGTTCTCCGGCA+AGG | - | chr2_2:6140499-6140518 | None:intergenic | 75.0% | |
| TCGCCGGCGTCTCTCCGGTG+AGG | - | chr2_2:6140354-6140373 | None:intergenic | 75.0% | |
| CCGGCCACCGTTCTCCGGCA+AGG | - | chr2_2:6140499-6140518 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 6139796 | 6140620 | 6139796 | ID=Msa0233730;Name=Msa0233730 |
| chr2_2 | mRNA | 6139796 | 6140620 | 6139796 | ID=Msa0233730-mRNA-1;Parent=Msa0233730;Name=Msa0233730-mRNA-1;_AED=0.18;_eAED=0.21;_QI=0|-1|0|1|-1|1|1|0|274 |
| chr2_2 | exon | 6139796 | 6140620 | 6139796 | ID=Msa0233730-mRNA-1:exon:2705;Parent=Msa0233730-mRNA-1 |
| chr2_2 | CDS | 6139796 | 6140620 | 6139796 | ID=Msa0233730-mRNA-1:cds;Parent=Msa0233730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
