AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0191700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0191700 MtrunA17_Chr2g0281521 80.620 258 7 2 29 248 13 265 1.21e-140 395
Msa0191700 MtrunA17_Chr4g0047911 44.351 239 70 10 55 248 33 253 2.77e-38 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0191700 AT1G61170.1 42.742 124 54 3 126 248 144 251 3.19e-15 73.2
Msa0191700 AT1G11125.1 31.939 263 109 9 42 248 17 265 1.38e-13 68.9

Find 75 sgRNAs with CRISPR-Local

Find 431 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTTGGTTTCTTCCATT+TGG 0.164688 2_1:-7336720 None:intergenic
TCATTTGGTTTCTTCCATTT+GGG 0.279406 2_1:-7336719 None:intergenic
ACATTAATTAATGATTATAT+TGG 0.281195 2_1:+7328939 None:intergenic
ATTCAACAGTGGAGAGTAAA+TGG 0.305564 2_1:+7337286 Msa0191700:CDS
AGAGACGCCGGCGAAGTTTC+CGG 0.307275 2_1:+7337117 Msa0191700:CDS
GGAGAACGGTGGCCGGAAAA+TGG 0.313036 2_1:+7337260 Msa0191700:CDS
GGAAAATCCACTTGTGTCAT+TGG 0.355990 2_1:+7337335 Msa0191700:CDS
AAGGCTGTTCTTCCCTTTCC+CGG 0.367623 2_1:-7337234 None:intergenic
TTGGTGTTGGCTAGTGGTAT+TGG 0.377705 2_1:+7328958 Msa0191700:CDS
TTAACTGTTTCTTCTTCAAC+AGG 0.384629 2_1:-7336677 None:intergenic
TTCTTCCCTTTCCCGGCGAT+TGG 0.384873 2_1:-7337227 None:intergenic
TCATATCTAAACCTTTCATT+TGG 0.387597 2_1:-7336734 None:intergenic
AAAGGGAAGAACAGCCTTGC+CGG 0.391214 2_1:+7337239 Msa0191700:CDS
CTCTCTTCTCTCACCGGAAA+AGG 0.407732 2_1:-7336965 None:intergenic
TGTGAAATGCTAGATCTTGA+TGG 0.410155 2_1:-7336617 None:intergenic
TGTTCAGAGGAGAGATCAAA+TGG 0.422598 2_1:+7337062 Msa0191700:CDS
AAGTTTCCGGCCGACGATCT+AGG 0.423459 2_1:+7337130 Msa0191700:CDS
GACTCATCATTAGCTGTAGA+TGG 0.427911 2_1:-7337309 None:intergenic
GACTGCTCCGACCTTCTTGC+CGG 0.434939 2_1:-7337006 None:intergenic
AGGAAGAAGAATCTTGCAAA+AGG 0.438874 2_1:+7336905 Msa0191700:CDS
AAACTTCGCCGGCGTCTCTC+CGG 0.444786 2_1:-7337113 None:intergenic
ATTAATGATTATATTGGTGT+TGG 0.444854 2_1:+7328945 None:intergenic
AGGAGAGATCAAATGGGAAA+TGG 0.445282 2_1:+7337069 Msa0191700:CDS
AACAAACCAATCGCCGGGAA+AGG 0.459022 2_1:+7337221 Msa0191700:CDS
CTCCGGCGAAAAGGAATGTT+GGG 0.469114 2_1:+7337028 Msa0191700:CDS
CCGGCCACCGTTCTCCGGCA+AGG 0.474190 2_1:-7337253 None:intergenic
ACAAACCAATCGCCGGGAAA+GGG 0.476850 2_1:+7337222 Msa0191700:CDS
AAGAAGGTCGGAGCAGTCTC+CGG 0.487899 2_1:+7337011 Msa0191700:CDS
CGGAGCAGTCTCCGGCGAAA+AGG 0.493736 2_1:+7337019 Msa0191700:CDS
GTTGGCTAGTGGTATTGGCT+TGG 0.495152 2_1:+7328963 Msa0191700:CDS
CTTGCCGGCGACTTTCTCGC+CGG 0.497162 2_1:-7336991 None:intergenic
TACAGCTAATGATGAGTCAC+TGG 0.507954 2_1:+7337314 Msa0191700:CDS
TGTTGTCAGAAACACCCAAA+TGG 0.517393 2_1:+7336705 Msa0191700:CDS
TCTCCGGCGAAAAGGAATGT+TGG 0.528330 2_1:+7337027 Msa0191700:CDS
GAATGAAGAATCAGCCTCAC+CGG 0.529905 2_1:+7337094 Msa0191700:CDS
TGTTGAAGAAGAAACAGTTA+AGG 0.531213 2_1:+7336679 Msa0191700:CDS
CCTTGCCGGAGAACGGTGGC+CGG 0.531831 2_1:+7337253 Msa0191700:CDS
CGGTGAGAGAAGAGAGTCTC+CGG 0.532502 2_1:+7336972 Msa0191700:CDS
CAGCCTCACCGGAGAGACGC+CGG 0.541053 2_1:+7337105 Msa0191700:CDS
AGGAAAACAAACCAATCGCC+GGG 0.548205 2_1:+7337216 Msa0191700:CDS
AGAACAGCCTTGCCGGAGAA+CGG 0.548840 2_1:+7337246 Msa0191700:CDS
TCGTCGGCCGGAAACTTCGC+CGG 0.554308 2_1:-7337124 None:intergenic
CGAGAAAGTCGCCGGCAAGA+AGG 0.555971 2_1:+7336995 Msa0191700:CDS
GGAAGAAGAATCTTGCAAAA+GGG 0.556806 2_1:+7336906 Msa0191700:CDS
TTTCATTGATAAGAGAGAAG+AGG 0.558734 2_1:+7336885 Msa0191700:CDS
GTCTCCGGCGAGAAAGTCGC+CGG 0.564723 2_1:+7336987 Msa0191700:CDS
AAGGAAAACAAACCAATCGC+CGG 0.566599 2_1:+7337215 Msa0191700:CDS
AGAGATCAAATGGGAAATGG+AGG 0.567817 2_1:+7337072 Msa0191700:CDS
AATGGAAGAAACCAAATGAA+AGG 0.569819 2_1:+7336723 Msa0191700:CDS
CCATTGTCAGTACGAGTAGC+CGG 0.570807 2_1:-7337156 None:intergenic
TGAGAGTGTGCTCCTCCTCA+AGG 0.571094 2_1:+7328990 Msa0191700:CDS
TCTAGCATTTCACAAGTGAA+AGG 0.573120 2_1:+7336626 Msa0191700:CDS
TGGTTCAACGAGATCTGTCG+TGG 0.573822 2_1:+7337176 Msa0191700:CDS
GTTCAGAGGAGAGATCAAAT+GGG 0.576457 2_1:+7337063 Msa0191700:CDS
CGGAGACTCTCTTCTCTCAC+CGG 0.579715 2_1:-7336971 None:intergenic
CAACGAGATCTGTCGTGGGT+CGG 0.580336 2_1:+7337181 Msa0191700:CDS
CGGCCGACGATCTAGGTCGC+CGG 0.588380 2_1:+7337137 Msa0191700:CDS
AAGCATTCCAATGACACAAG+TGG 0.592757 2_1:-7337342 None:intergenic
CCGGCTACTCGTACTGACAA+TGG 0.600535 2_1:+7337156 Msa0191700:CDS
GAATCTTGCAAAAGGGTCAA+CGG 0.602033 2_1:+7336913 Msa0191700:CDS
AAAGTCGCCGGCAAGAAGGT+CGG 0.608055 2_1:+7336999 Msa0191700:CDS
GGCGAAAAGGAATGTTGGGT+CGG 0.609373 2_1:+7337032 Msa0191700:CDS
CGGCGACCTAGATCGTCGGC+CGG 0.611451 2_1:-7337136 None:intergenic
TCGCCGGCGTCTCTCCGGTG+AGG 0.626235 2_1:-7337108 None:intergenic
ATTATATTGGTGTTGGCTAG+TGG 0.626710 2_1:+7328952 Msa0191700:CDS
TCTTCTTCAACAGGAACACA+AGG 0.632166 2_1:-7336668 None:intergenic
TGGGTCGGAGCTTATCTGCA+AGG 0.638945 2_1:+7337196 Msa0191700:CDS
GGTCGGCGAGGATTGTTCAG+AGG 0.639198 2_1:+7337049 Msa0191700:CDS
TAGCCGGCGACCTAGATCGT+CGG 0.649338 2_1:-7337140 None:intergenic
ACAGCCTTGCCGGAGAACGG+TGG 0.649383 2_1:+7337249 Msa0191700:CDS
AAAGGAATGTTGGGTCGGCG+AGG 0.657766 2_1:+7337037 Msa0191700:CDS
TCTTCAACAGGAACACAAGG+TGG 0.671847 2_1:-7336665 None:intergenic
GAAAATGGAAAATTCAACAG+TGG 0.675684 2_1:+7337275 Msa0191700:CDS
GGTTCAACGAGATCTGTCGT+GGG 0.679453 2_1:+7337177 Msa0191700:CDS
TCGAACCTGAGACCTTGAGG+AGG 0.685881 2_1:-7329002 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATATAAAAAAAAATA+TGG - chr2_1:7332263-7332282 None:intergenic 0.0%
!! AGAAAAATTAATGATTATAT+TGG + chr2_1:7329248-7329267 Msa0191700:intron 10.0%
!!! TAAAAAAAAAATCGTATTTT+CGG - chr2_1:7329543-7329562 None:intergenic 10.0%
!!! CAAATTTTAAATAATTGTAA+CGG + chr2_1:7329582-7329601 Msa0191700:intron 10.0%
!!! TTATTGAAAATATTTTGTTT+TGG + chr2_1:7329916-7329935 Msa0191700:intron 10.0%
!! TATTATTTATAATATATGAC+TGG - chr2_1:7330379-7330398 None:intergenic 10.0%
!! TTTATTAACAAAAAAACTTA+TGG - chr2_1:7330929-7330948 None:intergenic 10.0%
!!! AATTTTTTTTTTTGAAAAAG+AGG - chr2_1:7331215-7331234 None:intergenic 10.0%
!! AGTACATTTAATTATTTATT+CGG - chr2_1:7331605-7331624 None:intergenic 10.0%
!! TAAAAATTAAATAACTCTTA+AGG - chr2_1:7333590-7333609 None:intergenic 10.0%
!!! TTTGTTTATCAAATTTTAAA+TGG - chr2_1:7333785-7333804 None:intergenic 10.0%
!!! AATTTTCATAAAACTATATA+AGG - chr2_1:7334306-7334325 None:intergenic 10.0%
!!! TTATATAGTTTTATGAAAAT+TGG + chr2_1:7334305-7334324 Msa0191700:intron 10.0%
!!! TATATAGTTTTATGAAAATT+GGG + chr2_1:7334306-7334325 Msa0191700:intron 10.0%
!!! TACTTTTCATTTTTAAATTA+TGG + chr2_1:7335618-7335637 Msa0191700:intron 10.0%
!!! TACTTTTCTTTTTAAAATTA+TGG - chr2_1:7335747-7335766 None:intergenic 10.0%
!! AAATAATACCTTAAAATTCT+AGG + chr2_1:7329145-7329164 Msa0191700:intron 15.0%
!! AATAATACCTTAAAATTCTA+GGG + chr2_1:7329146-7329165 Msa0191700:intron 15.0%
!!! TATAATCATTAATTTTTCTC+AGG - chr2_1:7329247-7329266 None:intergenic 15.0%
!! AAATAATACCTTAAAATTCT+AGG + chr2_1:7329145-7329164 Msa0191700:intron 15.0%
!! AATAATACCTTAAAATTCTA+GGG + chr2_1:7329146-7329165 Msa0191700:intron 15.0%
!!! TGATTTTTCATTTATTTGTT+AGG - chr2_1:7330042-7330061 None:intergenic 15.0%
!! AAATGAAAAATCATTAATCA+CGG + chr2_1:7330049-7330068 Msa0191700:intron 15.0%
!! TAAAAAAAATTCTTTGATCT+TGG + chr2_1:7330774-7330793 Msa0191700:intron 15.0%
!!! ATTTTTTTCTGGAAAAAATA+GGG - chr2_1:7330802-7330821 None:intergenic 15.0%
!!! TATTTTTTTCTGGAAAAAAT+AGG - chr2_1:7330803-7330822 None:intergenic 15.0%
!!! TATTTTTTCCAGAAAAAAAT+AGG + chr2_1:7330802-7330821 Msa0191700:intron 15.0%
!!! TTAGAGTTTTACATATTTAT+AGG + chr2_1:7331756-7331775 Msa0191700:intron 15.0%
!! TTAAAAGATGTATTAATACA+AGG - chr2_1:7331919-7331938 None:intergenic 15.0%
!! TTTAAATTGCTAATATTAGT+TGG + chr2_1:7332205-7332224 Msa0191700:intron 15.0%
!!! ATAACATTTTATTTGTTTGT+TGG + chr2_1:7332528-7332547 Msa0191700:intron 15.0%
!! TCTTTGATTATATACATATA+AGG + chr2_1:7332774-7332793 Msa0191700:intron 15.0%
!! AAACTAAATATTAGATGTAT+TGG - chr2_1:7332897-7332916 None:intergenic 15.0%
!!! TATTTTTTAAGATTACACTT+TGG - chr2_1:7334846-7334865 None:intergenic 15.0%
!!! ATTTTTCATTTCAATTTTGA+AGG + chr2_1:7336077-7336096 Msa0191700:intron 15.0%
!! TTCAATAAAAACAATAACAT+AGG + chr2_1:7336511-7336530 Msa0191700:intron 15.0%
!!! ATATTGGTTTTGATGATTTT+TGG + chr2_1:7329086-7329105 Msa0191700:intron 20.0%
!!! ATATTGGTTTTGATGATTTT+TGG + chr2_1:7329086-7329105 Msa0191700:intron 20.0%
!!! TGGTTTTGTTTCTTATATTA+AGG + chr2_1:7329284-7329303 Msa0191700:intron 20.0%
!!! TTTTTTTCCCTAGAATTTTA+AGG - chr2_1:7329334-7329353 None:intergenic 20.0%
!! TTTCTATACAACAAAATTCA+TGG - chr2_1:7329787-7329806 None:intergenic 20.0%
!! CAATTATCCCAATAATAAAT+TGG + chr2_1:7329866-7329885 Msa0191700:intron 20.0%
!! CATTGAACCAATTTATTATT+GGG - chr2_1:7329876-7329895 None:intergenic 20.0%
!! TCTACATTGTTTGAATTTAA+TGG - chr2_1:7329957-7329976 None:intergenic 20.0%
!! TTATTAGGGTTAAATTAACT+AGG - chr2_1:7330017-7330036 None:intergenic 20.0%
!!! TTATTTGTTAGGACTTATTA+GGG - chr2_1:7330031-7330050 None:intergenic 20.0%
!!! TTTATTTGTTAGGACTTATT+AGG - chr2_1:7330032-7330051 None:intergenic 20.0%
!! AATGAAAAATCATTAATCAC+GGG + chr2_1:7330050-7330069 Msa0191700:intron 20.0%
!! TCAATTCATCAACATAAAAA+CGG + chr2_1:7330178-7330197 Msa0191700:intron 20.0%
!!! AAAGTGAAAATTTGAGATTA+TGG + chr2_1:7330494-7330513 Msa0191700:intron 20.0%
!!! CTTCAATTTTAAAGTAGAAA+AGG + chr2_1:7330582-7330601 Msa0191700:intron 20.0%
!! AACTAAAACTAATAAGTTTG+TGG - chr2_1:7330622-7330641 None:intergenic 20.0%
!!! ACAAACTTATTAGTTTTAGT+TGG + chr2_1:7330621-7330640 Msa0191700:intron 20.0%
!!! TAACAGTTTCTATTTTGATT+GGG - chr2_1:7330724-7330743 None:intergenic 20.0%
!!! ATAACAGTTTCTATTTTGAT+TGG - chr2_1:7330725-7330744 None:intergenic 20.0%
!!! TTTTAAATGGTGATAAAACT+TGG - chr2_1:7331446-7331465 None:intergenic 20.0%
!! AGAGACAAATTGATAAATAA+AGG + chr2_1:7331654-7331673 Msa0191700:intron 20.0%
!! AGCAACAAAAAAAAGATATA+TGG - chr2_1:7332020-7332039 None:intergenic 20.0%
!! GTTTCTGATCATATATTATT+CGG + chr2_1:7332049-7332068 Msa0191700:intron 20.0%
!! ATCTATAAATTACACATGAT+AGG - chr2_1:7332366-7332385 None:intergenic 20.0%
!!! TTAAATTACCATTTTTCCTT+TGG - chr2_1:7332451-7332470 None:intergenic 20.0%
!! TCATACATAAACTTATAATG+AGG + chr2_1:7332578-7332597 Msa0191700:intron 20.0%
!!! ACAATAGCTTTTAAATGAAT+CGG + chr2_1:7332724-7332743 Msa0191700:intron 20.0%
!! CAAAACAAATCAAAAGATTA+TGG + chr2_1:7332917-7332936 Msa0191700:intron 20.0%
!! AAAATATACTCAACAATGTA+TGG - chr2_1:7333047-7333066 None:intergenic 20.0%
!!! TAGTCATTTTCACTAATAAT+TGG + chr2_1:7333433-7333452 Msa0191700:intron 20.0%
!! AAATTAAATAACTCTTAAGG+TGG - chr2_1:7333587-7333606 None:intergenic 20.0%
!!! CATATATCAAATTTTCCAAT+CGG + chr2_1:7333748-7333767 Msa0191700:intron 20.0%
!! CAAATGTAAAACAACATTAA+TGG + chr2_1:7333801-7333820 Msa0191700:intron 20.0%
!! TAAAAATTAAAAATCCGTGT+AGG + chr2_1:7333952-7333971 Msa0191700:intron 20.0%
!!! ACTTCTTTTAAAAATTTGCA+CGG - chr2_1:7333996-7334015 None:intergenic 20.0%
!!! ATGATAAATGACATTCATTT+TGG - chr2_1:7334135-7334154 None:intergenic 20.0%
!!! TTAAATGTTGCTTTTCTATT+AGG - chr2_1:7334378-7334397 None:intergenic 20.0%
!! AGAAAAGCAACATTTAATAA+AGG + chr2_1:7334381-7334400 Msa0191700:intron 20.0%
!! AAGAAAAAACATTTCTTGTT+AGG + chr2_1:7335084-7335103 Msa0191700:intron 20.0%
!! GGAAATAAAAGTTGTAAAAT+GGG - chr2_1:7335165-7335184 None:intergenic 20.0%
!!! CAAACACACTTTTAAATTTT+AGG - chr2_1:7335562-7335581 None:intergenic 20.0%
!!! CTAAAATTTAAAAGTGTGTT+TGG + chr2_1:7335560-7335579 Msa0191700:intron 20.0%
!!! TTTTTAATCATGGTTGTATT+TGG - chr2_1:7335945-7335964 None:intergenic 20.0%
!!! GTTTTATGAGTTTTTAATCA+TGG - chr2_1:7335955-7335974 None:intergenic 20.0%
!! AAATTGGTTAACTTTATGTT+TGG - chr2_1:7336222-7336241 None:intergenic 20.0%
!! ACAAGTAGTAAACATTAAAT+TGG - chr2_1:7336238-7336257 None:intergenic 20.0%
!! AACAAATGGTAGTTAAAAAT+TGG - chr2_1:7336343-7336362 None:intergenic 20.0%
!!! TTGAAAATCATTGTTTTTGT+TGG - chr2_1:7336597-7336616 None:intergenic 20.0%
!!! TGGTTTTGTTTCTTATGTTA+AGG + chr2_1:7329106-7329125 Msa0191700:intron 25.0%
! TATTATTTATGTACCCATTC+CGG - chr2_1:7329133-7329152 None:intergenic 25.0%
!! TTGTTTCTTATATTAAGGAC+TGG + chr2_1:7329289-7329308 Msa0191700:intron 25.0%
! TATAGTAACACAAAGAAGAA+GGG - chr2_1:7329435-7329454 None:intergenic 25.0%
! TTATAGTAACACAAAGAAGA+AGG - chr2_1:7329436-7329455 None:intergenic 25.0%
! ACTCATGTGAATTGATAAAA+AGG + chr2_1:7329607-7329626 Msa0191700:intron 25.0%
! CCATTGAACCAATTTATTAT+TGG - chr2_1:7329877-7329896 None:intergenic 25.0%
!! CCAATAATAAATTGGTTCAA+TGG + chr2_1:7329874-7329893 Msa0191700:intron 25.0%
!!! GAAAATATTTTGTTTTGGAG+AGG + chr2_1:7329921-7329940 Msa0191700:intron 25.0%
! TATGGTTTAATATTCGTAGA+CGG - chr2_1:7330091-7330110 None:intergenic 25.0%
!! ACATAAACTTTTCTGCTATA+TGG - chr2_1:7330109-7330128 None:intergenic 25.0%
! ATAGCAGAAAAGTTTATGTA+TGG + chr2_1:7330110-7330129 Msa0191700:intron 25.0%
!!! TTCAAGTAGTTGATAGTATA+TGG - chr2_1:7330205-7330224 None:intergenic 25.0%
!!! TATATGGAGCATCTTTTTTT+TGG - chr2_1:7330303-7330322 None:intergenic 25.0%
! TTCTTCAATATTGCACTATA+TGG - chr2_1:7330319-7330338 None:intergenic 25.0%
!!! TTATGCATTTTTTCTGCAAA+GGG - chr2_1:7330418-7330437 None:intergenic 25.0%
!!! CTTAACTTTTTTGTTGTACT+AGG - chr2_1:7330446-7330465 None:intergenic 25.0%
! AAAACTAATAAGTTTGTGGT+AGG - chr2_1:7330618-7330637 None:intergenic 25.0%
! TTATTGTTAGAGAATGTCTT+GGG + chr2_1:7330741-7330760 Msa0191700:intron 25.0%
!!! CATTCTTTCCTATTTTTTTC+TGG - chr2_1:7330813-7330832 None:intergenic 25.0%
! TCTAATATCTCATCATACAT+TGG - chr2_1:7330883-7330902 None:intergenic 25.0%
! TTTATTCGGTATTTCGTTTA+GGG - chr2_1:7331591-7331610 None:intergenic 25.0%
! ATTTATTCGGTATTTCGTTT+AGG - chr2_1:7331592-7331611 None:intergenic 25.0%
! GCAAACAAAGGATAAAAAAT+AGG + chr2_1:7331711-7331730 Msa0191700:intron 25.0%
!!! GCTCTTTTGAAAAATCAAAT+GGG - chr2_1:7331808-7331827 None:intergenic 25.0%
!!! TGCTCTTTTGAAAAATCAAA+TGG - chr2_1:7331809-7331828 None:intergenic 25.0%
!!! TTTCAAAAGAGCATCAATTT+CGG + chr2_1:7331816-7331835 Msa0191700:intron 25.0%
! TAAGAAAAAATATCGTCTCA+GGG + chr2_1:7332336-7332355 Msa0191700:intron 25.0%
! GTTTGCACATTATATTTCAA+AGG + chr2_1:7332550-7332569 Msa0191700:intron 25.0%
! TGTTACATATATAGGAACTT+TGG - chr2_1:7332646-7332665 None:intergenic 25.0%
! TTTCGCATTGTTACATATAT+AGG - chr2_1:7332654-7332673 None:intergenic 25.0%
! ACGTATCCACAAATATATAA+TGG + chr2_1:7332841-7332860 Msa0191700:intron 25.0%
! GGTATACCATTATATATTTG+TGG - chr2_1:7332850-7332869 None:intergenic 25.0%
! TGCAAATTTAGCCTATTTAT+AGG + chr2_1:7333152-7333171 Msa0191700:intron 25.0%
! TCTATGATTGTCCTATAAAT+AGG - chr2_1:7333166-7333185 None:intergenic 25.0%
! TATTTATAGGACAATCATAG+AGG + chr2_1:7333165-7333184 Msa0191700:intron 25.0%
! AAAACGTGTAGTGAAATATT+TGG - chr2_1:7333373-7333392 None:intergenic 25.0%
! AGTGTACAGCAAAAAAATTA+AGG - chr2_1:7333493-7333512 None:intergenic 25.0%
! TAAAAGTTAACAATCCATGA+GGG - chr2_1:7333563-7333582 None:intergenic 25.0%
! ATAAAAGTTAACAATCCATG+AGG - chr2_1:7333564-7333583 None:intergenic 25.0%
! TGTGAAAATTATTTCGCAAT+TGG - chr2_1:7333628-7333647 None:intergenic 25.0%
! GCAAAAAAAAGAGAGTTTAA+TGG - chr2_1:7333652-7333671 None:intergenic 25.0%
! CCTTAAAAAAAACTATTGTG+AGG - chr2_1:7333913-7333932 None:intergenic 25.0%
!!! CCTCACAATAGTTTTTTTTA+AGG + chr2_1:7333910-7333929 Msa0191700:intron 25.0%
! CTATATAAGGCAATGTTAAT+TGG - chr2_1:7334293-7334312 None:intergenic 25.0%
! TACACATTAATCCTATTTCA+AGG + chr2_1:7334553-7334572 Msa0191700:intron 25.0%
! AATCTATTGCTTTCATTACT+TGG - chr2_1:7334776-7334795 None:intergenic 25.0%
! ATCCTTAAATCATTACTGAA+AGG + chr2_1:7334797-7334816 Msa0191700:intron 25.0%
! TTCCTTTCAGTAATGATTTA+AGG - chr2_1:7334802-7334821 None:intergenic 25.0%
! CAAAACATGTATATTTGACT+TGG - chr2_1:7334976-7334995 None:intergenic 25.0%
!!! GTCAAATATACATGTTTTGA+CGG + chr2_1:7334977-7334996 Msa0191700:intron 25.0%
! TTTACCAATGCATTAGAAAA+TGG - chr2_1:7335053-7335072 None:intergenic 25.0%
! GGGAAATAAAAGTTGTAAAA+TGG - chr2_1:7335166-7335185 None:intergenic 25.0%
! TAAAACTGTCATTAACTAAG+TGG + chr2_1:7335524-7335543 Msa0191700:intron 25.0%
! TTCTACTGTAAAATGGATAT+AGG - chr2_1:7335876-7335895 None:intergenic 25.0%
! GAGATATAAAAAGCAACAAA+TGG - chr2_1:7336357-7336376 None:intergenic 25.0%
!!! AAAGGTAGTTTTTTCTACTA+AGG - chr2_1:7336441-7336460 None:intergenic 25.0%
!!! ATAGTTTTACCAACACAAAA+TGG + chr2_1:7336536-7336555 Msa0191700:intron 25.0%
!!! TAGTTTTACCAACACAAAAT+GGG + chr2_1:7336537-7336556 Msa0191700:intron 25.0%
!!! AAAATCATTGTTTTTGTTGG+TGG - chr2_1:7336594-7336613 None:intergenic 25.0%
! TCATATCTAAACCTTTCATT+TGG - chr2_1:7336737-7336756 None:intergenic 25.0%
! TCAAATTTCTCAAAACACTT+TGG - chr2_1:7336770-7336789 None:intergenic 25.0%
! GAAATTTGATAGAGAGAATA+AGG + chr2_1:7336781-7336800 Msa0191700:intron 25.0%
! TTGTTTCTTATGTTAAGGAC+CGG + chr2_1:7329111-7329130 Msa0191700:intron 30.0%
! TTGGTTTCCCTAGAATTTTA+AGG - chr2_1:7329156-7329175 None:intergenic 30.0%
TCTTATATTAAGGACTGGAA+TGG + chr2_1:7329294-7329313 Msa0191700:intron 30.0%
CTTATATTAAGGACTGGAAT+GGG + chr2_1:7329295-7329314 Msa0191700:intron 30.0%
ACAAAAAGTCTAAACCTTCT+AGG - chr2_1:7329411-7329430 None:intergenic 30.0%
ATAGTAACACAAAGAAGAAG+GGG - chr2_1:7329434-7329453 None:intergenic 30.0%
TTTCATATGCACATATCAGA+GGG - chr2_1:7329503-7329522 None:intergenic 30.0%
TCTGATATGTGCATATGAAA+GGG + chr2_1:7329503-7329522 Msa0191700:intron 30.0%
CATGTGAATTGATAAAAAGG+AGG + chr2_1:7329610-7329629 Msa0191700:intron 30.0%
! ATGGTTTCATTTTCGTACAT+GGG - chr2_1:7329693-7329712 None:intergenic 30.0%
! TATGGTTTCATTTTCGTACA+TGG - chr2_1:7329694-7329713 None:intergenic 30.0%
! GATTGATTAAAGTACCAACA+CGG + chr2_1:7329738-7329757 Msa0191700:intron 30.0%
! ATTGATTAAAGTACCAACAC+GGG + chr2_1:7329739-7329758 Msa0191700:intron 30.0%
ATGGTTTAATATTCGTAGAC+GGG - chr2_1:7330090-7330109 None:intergenic 30.0%
TTGAAGAAACACAATTGCAT+AGG + chr2_1:7330331-7330350 Msa0191700:intron 30.0%
!!! GTTATGCATTTTTTCTGCAA+AGG - chr2_1:7330419-7330438 None:intergenic 30.0%
GTTATTGTTAGAGAATGTCT+TGG + chr2_1:7330740-7330759 Msa0191700:intron 30.0%
TATTGTTAGAGAATGTCTTG+GGG + chr2_1:7330742-7330761 Msa0191700:intron 30.0%
TACCAATAAATGACGATCAT+CGG + chr2_1:7331888-7331907 Msa0191700:intron 30.0%
GGAGACATTCACTAATAAAA+AGG - chr2_1:7332242-7332261 None:intergenic 30.0%
TACAAATATCTCTCAGCATT+CGG - chr2_1:7332318-7332337 None:intergenic 30.0%
GTAAGAAAAAATATCGTCTC+AGG + chr2_1:7332335-7332354 Msa0191700:intron 30.0%
!!! TTATGGGATTTTGAAGCAAA+GGG - chr2_1:7333005-7333024 None:intergenic 30.0%
!!! TTTATGGGATTTTGAAGCAA+AGG - chr2_1:7333006-7333025 None:intergenic 30.0%
TCTTCTACACGTTTATTTGT+AGG + chr2_1:7333515-7333534 Msa0191700:intron 30.0%
CTTCTACACGTTTATTTGTA+GGG + chr2_1:7333516-7333535 Msa0191700:intron 30.0%
!! TTTTATATCACTAGCCTACA+CGG - chr2_1:7333969-7333988 None:intergenic 30.0%
! TTTTGGTCATATGATTGTCA+CGG - chr2_1:7334118-7334137 None:intergenic 30.0%
TTTAATCATCATTTGCCAAG+TGG + chr2_1:7334332-7334351 Msa0191700:intron 30.0%
!!! CTAAGTGTTTTTTTTCCTGA+AGG - chr2_1:7334653-7334672 None:intergenic 30.0%
! GATTACACTTTGGAGAAATA+TGG - chr2_1:7334836-7334855 None:intergenic 30.0%
TAATAGAAGCTTATCCACAA+AGG - chr2_1:7334926-7334945 None:intergenic 30.0%
TTTGTGGATAAGCTTCTATT+AGG + chr2_1:7334925-7334944 Msa0191700:intron 30.0%
!! AACATGTATATTTGACTTGG+AGG - chr2_1:7334973-7334992 None:intergenic 30.0%
TCATTCCGAAGATAAATATG+AGG + chr2_1:7335013-7335032 Msa0191700:intron 30.0%
AGCTACCTCATATTTATCTT+CGG - chr2_1:7335021-7335040 None:intergenic 30.0%
AAAATCATCGCTCAGATAAT+TGG - chr2_1:7335119-7335138 None:intergenic 30.0%
! TTAAAAGTGTGTTTGGATGA+AGG + chr2_1:7335567-7335586 Msa0191700:intron 30.0%
CACTTGAGAAAACTTAGTTT+AGG + chr2_1:7335832-7335851 Msa0191700:intron 30.0%
CTGTAAAATGGATATAGGTT+TGG - chr2_1:7335871-7335890 None:intergenic 30.0%
! AACTAGCTTCTACTGTAAAA+TGG - chr2_1:7335883-7335902 None:intergenic 30.0%
AGTTATCCTCTCAAATGTTA+AGG + chr2_1:7335899-7335918 Msa0191700:intron 30.0%
TTGGAGTATACTTTAAGTCT+CGG - chr2_1:7336017-7336036 None:intergenic 30.0%
TTAAAAATTGGACAGGTCAA+TGG - chr2_1:7336331-7336350 None:intergenic 30.0%
ATGGTAGTTAAAAATTGGAC+AGG - chr2_1:7336338-7336357 None:intergenic 30.0%
GAAAACATAGATATCAACGT+AGG - chr2_1:7336494-7336513 None:intergenic 30.0%
! TTAACTGTTTCTTCTTCAAC+AGG - chr2_1:7336680-7336699 None:intergenic 30.0%
TGTTGAAGAAGAAACAGTTA+AGG + chr2_1:7336679-7336698 Msa0191700:CDS 30.0%
! TCATTTGGTTTCTTCCATTT+GGG - chr2_1:7336722-7336741 None:intergenic 30.0%
! TTCATTTGGTTTCTTCCATT+TGG - chr2_1:7336723-7336742 None:intergenic 30.0%
AATGGAAGAAACCAAATGAA+AGG + chr2_1:7336723-7336742 Msa0191700:CDS 30.0%
GATCTCATCAACTTTATAGA+AGG - chr2_1:7336815-7336834 None:intergenic 30.0%
TTTCATTGATAAGAGAGAAG+AGG + chr2_1:7336885-7336904 Msa0191700:CDS 30.0%
! CTGTTGAATTTTCCATTTTC+CGG - chr2_1:7337275-7337294 None:intergenic 30.0%
GAAAATGGAAAATTCAACAG+TGG + chr2_1:7337275-7337294 Msa0191700:CDS 30.0%
!! ATTATATTGGTGTTGGCTAG+TGG + chr2_1:7328952-7328971 Msa0191700:CDS 35.0%
! TCATTTTGTGTTCACCTAGA+AGG + chr2_1:7329394-7329413 Msa0191700:intron 35.0%
! TATCAGAGGGTTGAGTTTTT+GGG - chr2_1:7329490-7329509 None:intergenic 35.0%
! ATATCAGAGGGTTGAGTTTT+TGG - chr2_1:7329491-7329510 None:intergenic 35.0%
CTTTCATATGCACATATCAG+AGG - chr2_1:7329504-7329523 None:intergenic 35.0%
CTCTGATATGTGCATATGAA+AGG + chr2_1:7329502-7329521 Msa0191700:intron 35.0%
! ATTTTCGTACATGGGTTTTC+TGG - chr2_1:7329685-7329704 None:intergenic 35.0%
ATGAAACCATACAGCAAGAA+AGG + chr2_1:7329703-7329722 Msa0191700:intron 35.0%
!!! TTTCAGTTTTAGACCCGATT+TGG - chr2_1:7330148-7330167 None:intergenic 35.0%
TACTATCAACTACTTGAAGC+AGG + chr2_1:7330207-7330226 Msa0191700:intron 35.0%
!!! CGGTCTCGATCTTTTTTAAA+TGG - chr2_1:7331459-7331478 None:intergenic 35.0%
! TTTTCTAACCACAGGTTACT+CGG - chr2_1:7331479-7331498 None:intergenic 35.0%
!! TTTCTTGCTTTTCTAACCAC+AGG - chr2_1:7331487-7331506 None:intergenic 35.0%
! CACAACTTGATAGCAAACAA+AGG + chr2_1:7331699-7331718 Msa0191700:intron 35.0%
!!! TTTTTTTGTTGCTTTCGCAC+TGG + chr2_1:7332027-7332046 Msa0191700:intron 35.0%
GTATATAAGCCAAGTTGCTT+GGG - chr2_1:7332169-7332188 None:intergenic 35.0%
TGTATATAAGCCAAGTTGCT+TGG - chr2_1:7332170-7332189 None:intergenic 35.0%
GAAACTTCTTACCGATAACA+TGG + chr2_1:7332422-7332441 Msa0191700:intron 35.0%
! TCCTTTGGTTTCCATGTTAT+CGG - chr2_1:7332436-7332455 None:intergenic 35.0%
CATGGAAACCAAAGGAAAAA+TGG + chr2_1:7332440-7332459 Msa0191700:intron 35.0%
AGCTATTGTGTGTTTCCATA+GGG - chr2_1:7332713-7332732 None:intergenic 35.0%
AAGCTATTGTGTGTTTCCAT+AGG - chr2_1:7332714-7332733 None:intergenic 35.0%
! TCTCCTTTTACTAAGCATAG+GGG - chr2_1:7332978-7332997 None:intergenic 35.0%
! CTCTCCTTTTACTAAGCATA+GGG - chr2_1:7332979-7332998 None:intergenic 35.0%
! TCTCTCCTTTTACTAAGCAT+AGG - chr2_1:7332980-7332999 None:intergenic 35.0%
! GCATACTTCTGAAAAAGAGA+AGG + chr2_1:7333104-7333123 Msa0191700:intron 35.0%
! ATCAAATTTTCCAATCGGAG+AGG + chr2_1:7333753-7333772 Msa0191700:intron 35.0%
! CATATGATTGTCACGGATTA+AGG - chr2_1:7334111-7334130 None:intergenic 35.0%
!! TGCAAAGCTTTGAGTGTTAT+TGG - chr2_1:7334699-7334718 None:intergenic 35.0%
! ACACTTTGGAGAAATATGGT+TGG - chr2_1:7334832-7334851 None:intergenic 35.0%
! TATCCACAAAGGTACAATAG+TGG - chr2_1:7334915-7334934 None:intergenic 35.0%
TGGATAAGCTTCTATTAGGT+TGG + chr2_1:7334929-7334948 Msa0191700:intron 35.0%
! CGTTCCATTTTCTAATGCAT+TGG + chr2_1:7335046-7335065 Msa0191700:intron 35.0%
ATCGCTCAGATAATTGGATT+CGG - chr2_1:7335113-7335132 None:intergenic 35.0%
TATTCTTCGTAGAAGATCGA+GGG - chr2_1:7335194-7335213 None:intergenic 35.0%
TTATTCTTCGTAGAAGATCG+AGG - chr2_1:7335195-7335214 None:intergenic 35.0%
TTCTTTATCGCTCTCTCTAT+TGG - chr2_1:7335283-7335302 None:intergenic 35.0%
AAACTTAGAGAGATAGAGAG+CGG - chr2_1:7335427-7335446 None:intergenic 35.0%
TGTGTTTGGATGAAGGATTT+AGG + chr2_1:7335574-7335593 Msa0191700:intron 35.0%
TTTGGATGAAGGATTTAGGA+GGG + chr2_1:7335578-7335597 Msa0191700:intron 35.0%
TTTGAATTGAGGGTTTAGGA+GGG - chr2_1:7335787-7335806 None:intergenic 35.0%
TGTGTTTGAATTGAGGGTTT+AGG - chr2_1:7335791-7335810 None:intergenic 35.0%
TTAGGGTGTGTTTGAATTGA+GGG - chr2_1:7335797-7335816 None:intergenic 35.0%
! TTTAGGGTGTGTTTGAATTG+AGG - chr2_1:7335798-7335817 None:intergenic 35.0%
CAATTCAAACACACCCTAAA+AGG + chr2_1:7335798-7335817 Msa0191700:intron 35.0%
TCACTTCCTTAACATTTGAG+AGG - chr2_1:7335908-7335927 None:intergenic 35.0%
TTCTCCATGTGTAACTAGAA+AGG + chr2_1:7335983-7336002 Msa0191700:intron 35.0%
!! GTTACCTTTCTAGTTACACA+TGG - chr2_1:7335990-7336009 None:intergenic 35.0%
GTATACTTTAAGTCTCGGTA+AGG - chr2_1:7336012-7336031 None:intergenic 35.0%
! AAATTTGGTTGGTGTGTCAT+GGG - chr2_1:7336465-7336484 None:intergenic 35.0%
! AAAATTTGGTTGGTGTGTCA+TGG - chr2_1:7336466-7336485 None:intergenic 35.0%
GTAGGTTGTGAAAATTTGGT+TGG - chr2_1:7336476-7336495 None:intergenic 35.0%
CAACGTAGGTTGTGAAAATT+TGG - chr2_1:7336480-7336499 None:intergenic 35.0%
TGTGAAATGCTAGATCTTGA+TGG - chr2_1:7336620-7336639 None:intergenic 35.0%
TCTAGCATTTCACAAGTGAA+AGG + chr2_1:7336626-7336645 Msa0191700:CDS 35.0%
AGGAAGAAGAATCTTGCAAA+AGG + chr2_1:7336905-7336924 Msa0191700:CDS 35.0%
GGAAGAAGAATCTTGCAAAA+GGG + chr2_1:7336906-7336925 Msa0191700:CDS 35.0%
ATTCAACAGTGGAGAGTAAA+TGG + chr2_1:7337286-7337305 Msa0191700:CDS 35.0%
TCTTATGTTAAGGACCGGAA+TGG + chr2_1:7329116-7329135 Msa0191700:intron 40.0%
CTTATGTTAAGGACCGGAAT+GGG + chr2_1:7329117-7329136 Msa0191700:intron 40.0%
! ACGTAACCTTTCTTGCTGTA+TGG - chr2_1:7329712-7329731 None:intergenic 40.0%
TACCAACACGGGTCTAAAAA+TGG + chr2_1:7329750-7329769 Msa0191700:intron 40.0%
!! TTCCATTTTTAGACCCGTGT+TGG - chr2_1:7329755-7329774 None:intergenic 40.0%
!! ACCCGATTTGGTGCTTTAAT+GGG - chr2_1:7330136-7330155 None:intergenic 40.0%
GACCGATGATCGTCATTTAT+TGG - chr2_1:7331893-7331912 None:intergenic 40.0%
CAGCATTCGGATCAATTCAT+CGG - chr2_1:7332305-7332324 None:intergenic 40.0%
ACCGATAACATGGAAACCAA+AGG + chr2_1:7332432-7332451 Msa0191700:intron 40.0%
AATACATGTCGCAAACCCTA+TGG + chr2_1:7332695-7332714 Msa0191700:intron 40.0%
TTTCCTAACCTCATGTGCAT+GGG - chr2_1:7332871-7332890 None:intergenic 40.0%
! TTTTCCTAACCTCATGTGCA+TGG - chr2_1:7332872-7332891 None:intergenic 40.0%
TCACCCCTATGCTTAGTAAA+AGG + chr2_1:7332972-7332991 Msa0191700:intron 40.0%
AAGAGAAGGAAGAAACGATG+TGG + chr2_1:7333118-7333137 Msa0191700:intron 40.0%
! TTTTGTTCAAGTGACCCTCA+TGG + chr2_1:7333546-7333565 Msa0191700:intron 40.0%
ATCCTATTTCAAGGCCAAGA+AGG + chr2_1:7334562-7334581 Msa0191700:intron 40.0%
AGTCCAAGTAGAAGGAGAAA+TGG + chr2_1:7334588-7334607 Msa0191700:intron 40.0%
GTCCAAGTAGAAGGAGAAAT+GGG + chr2_1:7334589-7334608 Msa0191700:intron 40.0%
CTTGAGATTTCAACTCCTTC+AGG + chr2_1:7334635-7334654 Msa0191700:intron 40.0%
!!! TTTTTGTGCTTGGTGTAGGA+TGG - chr2_1:7334888-7334907 None:intergenic 40.0%
ATCCTACACCAAGCACAAAA+AGG + chr2_1:7334887-7334906 Msa0191700:intron 40.0%
!!! ATCCTTTTTGTGCTTGGTGT+AGG - chr2_1:7334892-7334911 None:intergenic 40.0%
!! TAGTGGATCCTTTTTGTGCT+TGG - chr2_1:7334898-7334917 None:intergenic 40.0%
GATCCACTATTGTACCTTTG+TGG + chr2_1:7334909-7334928 Msa0191700:intron 40.0%
TCGCTCAGATAATTGGATTC+GGG - chr2_1:7335112-7335131 None:intergenic 40.0%
AACTTAGAGAGATAGAGAGC+GGG - chr2_1:7335426-7335445 None:intergenic 40.0%
GTTTGGATGAAGGATTTAGG+AGG + chr2_1:7335577-7335596 Msa0191700:intron 40.0%
TTGGATGAAGGATTTAGGAG+GGG + chr2_1:7335579-7335598 Msa0191700:intron 40.0%
TTGAATTGAGGGTTTAGGAG+GGG - chr2_1:7335786-7335805 None:intergenic 40.0%
GTTTGAATTGAGGGTTTAGG+AGG - chr2_1:7335788-7335807 None:intergenic 40.0%
!! TGTCGCTTCTCATCCTTTTA+GGG - chr2_1:7335814-7335833 None:intergenic 40.0%
ATGGTTGTATTTGGAGAGTG+AGG - chr2_1:7335936-7335955 None:intergenic 40.0%
AAATTGGACAGGTCAATGGA+TGG - chr2_1:7336327-7336346 None:intergenic 40.0%
! GTGACTAGTTGAACAAGAAG+AGG - chr2_1:7336391-7336410 None:intergenic 40.0%
! CACAACAACCCATTTTGTGT+TGG - chr2_1:7336548-7336567 None:intergenic 40.0%
TCTTCTTCAACAGGAACACA+AGG - chr2_1:7336671-7336690 None:intergenic 40.0%
TGTTGTCAGAAACACCCAAA+TGG + chr2_1:7336705-7336724 Msa0191700:CDS 40.0%
!! TGAGATCTCTGAAGTTTCTG+AGG + chr2_1:7336828-7336847 Msa0191700:intron 40.0%
GAATCTTGCAAAAGGGTCAA+CGG + chr2_1:7336913-7336932 Msa0191700:CDS 40.0%
!! ACCATTTTTGCGCATTTTCG+CGG - chr2_1:7336944-7336963 None:intergenic 40.0%
! CGCAAAAATGGTTCCTTTTC+CGG + chr2_1:7336952-7336971 Msa0191700:CDS 40.0%
TGTTCAGAGGAGAGATCAAA+TGG + chr2_1:7337062-7337081 Msa0191700:CDS 40.0%
GTTCAGAGGAGAGATCAAAT+GGG + chr2_1:7337063-7337082 Msa0191700:CDS 40.0%
AGGAGAGATCAAATGGGAAA+TGG + chr2_1:7337069-7337088 Msa0191700:CDS 40.0%
AGAGATCAAATGGGAAATGG+AGG + chr2_1:7337072-7337091 Msa0191700:CDS 40.0%
AAGGAAAACAAACCAATCGC+CGG + chr2_1:7337215-7337234 Msa0191700:CDS 40.0%
GACTCATCATTAGCTGTAGA+TGG - chr2_1:7337312-7337331 None:intergenic 40.0%
TACAGCTAATGATGAGTCAC+TGG + chr2_1:7337314-7337333 Msa0191700:CDS 40.0%
GGAAAATCCACTTGTGTCAT+TGG + chr2_1:7337335-7337354 Msa0191700:CDS 40.0%
AAGCATTCCAATGACACAAG+TGG - chr2_1:7337345-7337364 None:intergenic 40.0%
!! TTGGTGTTGGCTAGTGGTAT+TGG + chr2_1:7328958-7328977 Msa0191700:CDS 45.0%
! CTCTCTGGTGTCAATTTCGA+TGG + chr2_1:7329027-7329046 Msa0191700:intron 45.0%
! CTCTCTGGTGTCAATTTCGA+TGG - chr2_1:7329027-7329046 None:intergenic 45.0%
TTCTCAGGTTCGATTCTCTC+TGG - chr2_1:7329232-7329251 None:intergenic 45.0%
! GGCCCATTAAAGCACCAAAT+CGG + chr2_1:7330131-7330150 Msa0191700:intron 45.0%
! GCCCATTAAAGCACCAAATC+GGG + chr2_1:7330132-7330151 Msa0191700:intron 45.0%
!! GACCCGATTTGGTGCTTTAA+TGG - chr2_1:7330137-7330156 None:intergenic 45.0%
GAATACTGAGTTCGATTCCC+AGG - chr2_1:7332107-7332126 None:intergenic 45.0%
CATTCGGATCAATTCATCGG+TGG - chr2_1:7332302-7332321 None:intergenic 45.0%
ATGGTATACCCATGCACATG+AGG + chr2_1:7332860-7332879 Msa0191700:intron 45.0%
ATACCCATGCACATGAGGTT+AGG + chr2_1:7332865-7332884 Msa0191700:intron 45.0%
AGAAGGAAGAAACGATGTGG+CGG + chr2_1:7333121-7333140 Msa0191700:intron 45.0%
! CACATATGCATTGTGCCACT+TGG - chr2_1:7334350-7334369 None:intergenic 45.0%
CAAGTGGCACAATGCATATG+TGG + chr2_1:7334348-7334367 Msa0191700:intron 45.0%
!! CTCCTTCTTGGCCTTGAAAT+AGG - chr2_1:7334567-7334586 None:intergenic 45.0%
CTATTTCAAGGCCAAGAAGG+AGG + chr2_1:7334565-7334584 Msa0191700:intron 45.0%
CTCCCATTTCTCCTTCTACT+TGG - chr2_1:7334594-7334613 None:intergenic 45.0%
GCTCAGATAATTGGATTCGG+GGG - chr2_1:7335110-7335129 None:intergenic 45.0%
CGCTCAGATAATTGGATTCG+GGG - chr2_1:7335111-7335130 None:intergenic 45.0%
GTAGAAGATCGAGGGAGATA+GGG - chr2_1:7335186-7335205 None:intergenic 45.0%
ACTTAGAGAGATAGAGAGCG+GGG - chr2_1:7335425-7335444 None:intergenic 45.0%
!!! GTGTCGCTTCTCATCCTTTT+AGG - chr2_1:7335815-7335834 None:intergenic 45.0%
TCTTCAACAGGAACACAAGG+TGG - chr2_1:7336668-7336687 None:intergenic 45.0%
!! CCATTTTTGCGCATTTTCGC+GGG - chr2_1:7336943-7336962 None:intergenic 45.0%
GAATGAAGAATCAGCCTCAC+CGG + chr2_1:7337094-7337113 Msa0191700:CDS 45.0%
AGGAAAACAAACCAATCGCC+GGG + chr2_1:7337216-7337235 Msa0191700:CDS 45.0%
!! AAAAAAATTAATGATTATAT+TGG + chr2_1:7329070-7329089 Msa0191700:intron 5.0%
!! AAAAAAATTAATGATTATAT+TGG - chr2_1:7329070-7329089 None:intergenic 5.0%
!!! GATTTTTTTTTTAAATATTT+TGG + chr2_1:7329550-7329569 Msa0191700:intron 5.0%
!!! TTTTTTTCTTTAATTAATAA+TGG - chr2_1:7331288-7331307 None:intergenic 5.0%
!!! TAAAAAGAATTTATTTTTTT+TGG + chr2_1:7331842-7331861 Msa0191700:intron 5.0%
!!! AATTTAAAAACTTTTAAATA+TGG - chr2_1:7332193-7332212 None:intergenic 5.0%
!!! AGTTTTTTTTTTTTTTTTAT+GGG - chr2_1:7333021-7333040 None:intergenic 5.0%
!!! AAGTTTTTTTTTTTTTTTTA+TGG - chr2_1:7333022-7333041 None:intergenic 5.0%
!! AAAAAAATTAATGTTAAAAT+TGG + chr2_1:7333853-7333872 Msa0191700:intron 5.0%
!!! AAATATTTCTTTTAAATTTT+TGG - chr2_1:7335477-7335496 None:intergenic 5.0%
!!! ATTATAACTAAATTTAATTT+TGG - chr2_1:7336036-7336055 None:intergenic 5.0%
!! GTTGGCTAGTGGTATTGGCT+TGG + chr2_1:7328963-7328982 Msa0191700:CDS 50.0%
GAATCGAACCTGAGACCTTG+AGG - chr2_1:7329008-7329027 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCTC+TGG + chr2_1:7329012-7329031 Msa0191700:intron 50.0%
GAACCCGCGTACATTAATCG+CGG + chr2_1:7329652-7329671 Msa0191700:intron 50.0%
AACCCGCGTACATTAATCGC+GGG + chr2_1:7329653-7329672 Msa0191700:intron 50.0%
!! AATGGGAGCACTGATGAGAG+TGG - chr2_1:7331791-7331810 None:intergenic 50.0%
TACTGAGTTCGATTCCCAGG+AGG - chr2_1:7332104-7332123 None:intergenic 50.0%
GTATTCCCCGAGTATGTCCT+TGG + chr2_1:7332121-7332140 Msa0191700:intron 50.0%
TCCTTCCAAGGACATACTCG+GGG - chr2_1:7332129-7332148 None:intergenic 50.0%
CTCCTTCCAAGGACATACTC+GGG - chr2_1:7332130-7332149 None:intergenic 50.0%
GCTCCTTCCAAGGACATACT+CGG - chr2_1:7332131-7332150 None:intergenic 50.0%
ATGGCAATGAGCTCCTTCCA+AGG - chr2_1:7332141-7332160 None:intergenic 50.0%
TGGAAGGAGCTCATTGCCAT+TGG + chr2_1:7332141-7332160 Msa0191700:intron 50.0%
CCAAGTTGCTTGGGTTCCAA+TGG - chr2_1:7332160-7332179 None:intergenic 50.0%
CCATTGGAACCCAAGCAACT+TGG + chr2_1:7332157-7332176 Msa0191700:intron 50.0%
! AGAAACGATGTGGCGGAAAG+TGG + chr2_1:7333128-7333147 Msa0191700:intron 50.0%
CTACTTGGACTCCTCCTTCT+TGG - chr2_1:7334579-7334598 None:intergenic 50.0%
GAAGGAGGAGTCCAAGTAGA+AGG + chr2_1:7334580-7334599 Msa0191700:intron 50.0%
TGGTGTAGGATGGAAGGAGA+GGG - chr2_1:7334878-7334897 None:intergenic 50.0%
TTGGTGTAGGATGGAAGGAG+AGG - chr2_1:7334879-7334898 None:intergenic 50.0%
!! TGTGCTTGGTGTAGGATGGA+AGG - chr2_1:7334884-7334903 None:intergenic 50.0%
CGTAGAAGATCGAGGGAGAT+AGG - chr2_1:7335187-7335206 None:intergenic 50.0%
CTTAGAGAGATAGAGAGCGG+GGG - chr2_1:7335424-7335443 None:intergenic 50.0%
TTAGGAGGGGAAGAGATGAG+AGG + chr2_1:7335592-7335611 Msa0191700:intron 50.0%
TAGGAGGGGAAGAGATGAGA+GGG + chr2_1:7335593-7335612 Msa0191700:intron 50.0%
TTGAGGGTTTAGGAGGGGAA+GGG - chr2_1:7335781-7335800 None:intergenic 50.0%
ATTGAGGGTTTAGGAGGGGA+AGG - chr2_1:7335782-7335801 None:intergenic 50.0%
TGGACAGGTCAATGGATGGA+AGG - chr2_1:7336323-7336342 None:intergenic 50.0%
! GGTTGGTGTGTCATGGGAAA+AGG - chr2_1:7336459-7336478 None:intergenic 50.0%
CCCGCGAAAATGCGCAAAAA+TGG + chr2_1:7336940-7336959 Msa0191700:CDS 50.0%
CTCTCTTCTCTCACCGGAAA+AGG - chr2_1:7336968-7336987 None:intergenic 50.0%
TCTCCGGCGAAAAGGAATGT+TGG + chr2_1:7337027-7337046 Msa0191700:CDS 50.0%
CTCCGGCGAAAAGGAATGTT+GGG + chr2_1:7337028-7337047 Msa0191700:CDS 50.0%
! GACCCAACATTCCTTTTCGC+CGG - chr2_1:7337033-7337052 None:intergenic 50.0%
GGCGAAAAGGAATGTTGGGT+CGG + chr2_1:7337032-7337051 Msa0191700:CDS 50.0%
CCATTGTCAGTACGAGTAGC+CGG - chr2_1:7337159-7337178 None:intergenic 50.0%
TGGTTCAACGAGATCTGTCG+TGG + chr2_1:7337176-7337195 Msa0191700:CDS 50.0%
GGTTCAACGAGATCTGTCGT+GGG + chr2_1:7337177-7337196 Msa0191700:CDS 50.0%
AACAAACCAATCGCCGGGAA+AGG + chr2_1:7337221-7337240 Msa0191700:CDS 50.0%
ACAAACCAATCGCCGGGAAA+GGG + chr2_1:7337222-7337241 Msa0191700:CDS 50.0%
AAGGCTGTTCTTCCCTTTCC+CGG - chr2_1:7337237-7337256 None:intergenic 50.0%
AAAGGGAAGAACAGCCTTGC+CGG + chr2_1:7337239-7337258 Msa0191700:CDS 50.0%
! TGAGAGTGTGCTCCTCCTCA+AGG + chr2_1:7328990-7329009 Msa0191700:CDS 55.0%
TCGAACCTGAGACCTTGAGG+AGG - chr2_1:7329005-7329024 None:intergenic 55.0%
TGCCCGCGATTAATGTACGC+GGG - chr2_1:7329658-7329677 None:intergenic 55.0%
GTGCCCGCGATTAATGTACG+CGG - chr2_1:7329659-7329678 None:intergenic 55.0%
GATCGAGACCGAGTAACCTG+TGG + chr2_1:7331468-7331487 Msa0191700:intron 55.0%
ATTCGGCTCATGCGTAGCAC+TGG + chr2_1:7332066-7332085 Msa0191700:intron 55.0%
TTCCCAGGAGGAACAACGCT+TGG - chr2_1:7332092-7332111 None:intergenic 55.0%
TCCCCGAGTATGTCCTTGGA+AGG + chr2_1:7332125-7332144 Msa0191700:intron 55.0%
ATGGCGTGATCCTCTCCGAT+TGG - chr2_1:7333766-7333785 None:intergenic 55.0%
CGGAGACTCTCTTCTCTCAC+CGG - chr2_1:7336974-7336993 None:intergenic 55.0%
CGGTGAGAGAAGAGAGTCTC+CGG + chr2_1:7336972-7336991 Msa0191700:CDS 55.0%
AAAGTCGCCGGCAAGAAGGT+CGG + chr2_1:7336999-7337018 Msa0191700:CDS 55.0%
AAGAAGGTCGGAGCAGTCTC+CGG + chr2_1:7337011-7337030 Msa0191700:CDS 55.0%
AAAGGAATGTTGGGTCGGCG+AGG + chr2_1:7337037-7337056 Msa0191700:CDS 55.0%
AAGTTTCCGGCCGACGATCT+AGG + chr2_1:7337130-7337149 Msa0191700:CDS 55.0%
! CCGGCTACTCGTACTGACAA+TGG + chr2_1:7337156-7337175 Msa0191700:CDS 55.0%
CAACGAGATCTGTCGTGGGT+CGG + chr2_1:7337181-7337200 Msa0191700:CDS 55.0%
TGGGTCGGAGCTTATCTGCA+AGG + chr2_1:7337196-7337215 Msa0191700:CDS 55.0%
TTCTTCCCTTTCCCGGCGAT+TGG - chr2_1:7337230-7337249 None:intergenic 55.0%
AGAACAGCCTTGCCGGAGAA+CGG + chr2_1:7337246-7337265 Msa0191700:CDS 55.0%
! ATTTTCCGGCCACCGTTCTC+CGG - chr2_1:7337261-7337280 None:intergenic 55.0%
GTGCTCCTCCTCAAGGTCTC+AGG + chr2_1:7328997-7329016 Msa0191700:intron 60.0%
! TGGCCAAGCGTTGTTCCTCC+TGG + chr2_1:7332086-7332105 Msa0191700:intron 60.0%
! GGCCAAGCGTTGTTCCTCCT+GGG + chr2_1:7332087-7332106 Msa0191700:intron 60.0%
CGAGAAAGTCGCCGGCAAGA+AGG + chr2_1:7336995-7337014 Msa0191700:CDS 60.0%
GACTGCTCCGACCTTCTTGC+CGG - chr2_1:7337009-7337028 None:intergenic 60.0%
GGTCGGCGAGGATTGTTCAG+AGG + chr2_1:7337049-7337068 Msa0191700:CDS 60.0%
AAACTTCGCCGGCGTCTCTC+CGG - chr2_1:7337116-7337135 None:intergenic 60.0%
AGAGACGCCGGCGAAGTTTC+CGG + chr2_1:7337117-7337136 Msa0191700:CDS 60.0%
TAGCCGGCGACCTAGATCGT+CGG - chr2_1:7337143-7337162 None:intergenic 60.0%
GGAGAACGGTGGCCGGAAAA+TGG + chr2_1:7337260-7337279 Msa0191700:CDS 60.0%
GTCTCCGGCGAGAAAGTCGC+CGG + chr2_1:7336987-7337006 Msa0191700:CDS 65.0%
CTTGCCGGCGACTTTCTCGC+CGG - chr2_1:7336994-7337013 None:intergenic 65.0%
CGGAGCAGTCTCCGGCGAAA+AGG + chr2_1:7337019-7337038 Msa0191700:CDS 65.0%
TCGTCGGCCGGAAACTTCGC+CGG - chr2_1:7337127-7337146 None:intergenic 65.0%
ACAGCCTTGCCGGAGAACGG+TGG + chr2_1:7337249-7337268 Msa0191700:CDS 65.0%
CAGCCTCACCGGAGAGACGC+CGG + chr2_1:7337105-7337124 Msa0191700:CDS 70.0%
CGGCGACCTAGATCGTCGGC+CGG - chr2_1:7337139-7337158 None:intergenic 70.0%
CGGCCGACGATCTAGGTCGC+CGG + chr2_1:7337137-7337156 Msa0191700:CDS 70.0%
CCTTGCCGGAGAACGGTGGC+CGG + chr2_1:7337253-7337272 Msa0191700:CDS 70.0%
TCGCCGGCGTCTCTCCGGTG+AGG - chr2_1:7337111-7337130 None:intergenic 75.0%
CCGGCCACCGTTCTCCGGCA+AGG - chr2_1:7337256-7337275 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 7328949 7337377 7328949 ID=Msa0191700;Name=Msa0191700
chr2_1 mRNA 7328949 7337377 7328949 ID=Msa0191700-mRNA-1;Parent=Msa0191700;Name=Msa0191700-mRNA-1;_AED=0.14;_eAED=0.18;_QI=0|0|0|0.66|1|1|3|0|248
chr2_1 exon 7328949 7329011 7328949 ID=Msa0191700-mRNA-1:exon:3366;Parent=Msa0191700-mRNA-1
chr2_1 exon 7336581 7336744 7336581 ID=Msa0191700-mRNA-1:exon:3367;Parent=Msa0191700-mRNA-1
chr2_1 exon 7336858 7337377 7336858 ID=Msa0191700-mRNA-1:exon:3368;Parent=Msa0191700-mRNA-1
chr2_1 CDS 7328949 7329011 7328949 ID=Msa0191700-mRNA-1:cds;Parent=Msa0191700-mRNA-1
chr2_1 CDS 7336581 7336744 7336581 ID=Msa0191700-mRNA-1:cds;Parent=Msa0191700-mRNA-1
chr2_1 CDS 7336858 7337377 7336858 ID=Msa0191700-mRNA-1:cds;Parent=Msa0191700-mRNA-1
Gene Sequence

>Msa0191700

ATGATTATATTGGTGTTGGCTAGTGGTATTGGCTTGGAATCTGAGAGTGTGCTCCTCCTCAAGATCTTCATCACCACCAACAAAAACAATGATTTTCAACCATCAAGATCTAGCATTTCACAAGTGAAAGGTTCTGAAAACAGAGCACCACCTTGTGTTCCTGTTGAAGAAGAAACAGTTAAGGAAGTGTTGTCAGAAACACCCAAATGGAAGAAACCAAATGAAAGCTTGAGTGAAAGTGTTTCTACAATCACTTTCATTGATAAGAGAGAAGAGGAAGAAGAATCTTGCAAAAGGGTCAACGGATCTCCCGCGAAAATGCGCAAAAATGGTTCCTTTTCCGGTGAGAGAAGAGAGTCTCCGGCGAGAAAGTCGCCGGCAAGAAGGTCGGAGCAGTCTCCGGCGAAAAGGAATGTTGGGTCGGCGAGGATTGTTCAGAGGAGAGATCAAATGGGAAATGGAGGAATGAAGAATCAGCCTCACCGGAGAGACGCCGGCGAAGTTTCCGGCCGACGATCTAGGTCGCCGGCTACTCGTACTGACAATGGTTCAACGAGATCTGTCGTGGGTCGGAGCTTATCTGCAAGGAAAACAAACCAATCGCCGGGAAAGGGAAGAACAGCCTTGCCGGAGAACGGTGGCCGGAAAATGGAAAATTCAACAGTGGAGAGTAAATGGCCATCTACAGCTAATGATGAGTCACTGGAAAATCCACTTGTGTCATTGGAATGCTTCATCTTTCTCTAG

Protein sequence

>Msa0191700

MIILVLASGIGLESESVLLLKIFITTNKNNDFQPSRSSISQVKGSENRAPPCVPVEEETVKEVLSETPKWKKPNESLSESVSTITFIDKREEEEESCKRVNGSPAKMRKNGSFSGERRESPARKSPARRSEQSPAKRNVGSARIVQRRDQMGNGGMKNQPHRRDAGEVSGRRSRSPATRTDNGSTRSVVGRSLSARKTNQSPGKGRTALPENGGRKMENSTVESKWPSTANDESLENPLVSLECFIFL*