Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404170 | XP_003593490.1 | 94.253 | 261 | 10 | 1 | 24 | 284 | 10 | 265 | 1.29e-174 | 493 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404170 | G7INX9 | 94.253 | 261 | 10 | 1 | 24 | 284 | 10 | 265 | 6.15e-175 | 493 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012940 | Msa1404170 | 0.800090 | 1.696270e-48 | -8.615850e-47 |
| Msa0093850 | Msa1404170 | 0.802206 | 6.263462e-49 | -8.615850e-47 |
| Msa1369150 | Msa1404170 | 0.807239 | 5.570262e-50 | -8.615850e-47 |
| Msa1374060 | Msa1404170 | 0.806949 | 6.416485e-50 | -8.615850e-47 |
| Msa1404170 | Msa1443930 | 0.823520 | 1.325605e-53 | -8.615850e-47 |
| Msa0614930 | Msa1404170 | 0.803912 | 2.780028e-49 | -8.615850e-47 |
| Msa0626450 | Msa1404170 | 0.804068 | 2.579700e-49 | -8.615850e-47 |
| Msa0626490 | Msa1404170 | 0.803338 | 3.655774e-49 | -8.615850e-47 |
| Msa0664600 | Msa1404170 | 0.800559 | 1.361693e-48 | -8.615850e-47 |
| Msa0729100 | Msa1404170 | 0.809758 | 1.615472e-50 | -8.615850e-47 |
| Msa0766930 | Msa1404170 | 0.801061 | 1.075433e-48 | -8.615850e-47 |
| Msa0788770 | Msa1404170 | 0.829422 | 5.192524e-55 | -8.615850e-47 |
| Msa0807280 | Msa1404170 | 0.813459 | 2.532200e-51 | -8.615850e-47 |
| Msa0807820 | Msa1404170 | 0.828973 | 6.676069e-55 | -8.615850e-47 |
| Msa0134180 | Msa1404170 | 0.803447 | 3.470840e-49 | -8.615850e-47 |
| Msa0146280 | Msa1404170 | 0.808002 | 3.836303e-50 | -8.615850e-47 |
| Msa0191700 | Msa1404170 | 0.966053 | 2.076243e-125 | -8.615850e-47 |
| Msa0233730 | Msa1404170 | 0.866719 | 2.321088e-65 | -8.615850e-47 |
| Msa1235250 | Msa1404170 | 0.823070 | 1.688387e-53 | -8.615850e-47 |
| Msa1276660 | Msa1404170 | 0.804472 | 2.124965e-49 | -8.615850e-47 |
| Msa1066490 | Msa1404170 | 0.800100 | 1.688789e-48 | -8.615850e-47 |
| Msa0312360 | Msa1404170 | 0.970201 | 2.934550e-131 | -8.615850e-47 |
| Msa1174530 | Msa1404170 | 0.826756 | 2.277736e-54 | -8.615850e-47 |
| Msa0856050 | Msa1404170 | 0.813319 | 2.718412e-51 | -8.615850e-47 |
| Msa0861510 | Msa1404170 | 0.803251 | 3.810488e-49 | -8.615850e-47 |
| Msa0866290 | Msa1404170 | 0.813925 | 1.999851e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404170 | MtrunA17_Chr2g0281521 | 94.253 | 261 | 10 | 1 | 24 | 284 | 10 | 265 | 1.18e-178 | 493 |
| Msa1404170 | MtrunA17_Chr4g0047911 | 45.122 | 246 | 96 | 10 | 53 | 284 | 33 | 253 | 8.97e-41 | 141 |
| Msa1404170 | MtrunA17_Chr2g0323991 | 30.284 | 317 | 140 | 13 | 11 | 284 | 1 | 279 | 5.53e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404170 | AT1G11125.1 | 35.379 | 277 | 119 | 12 | 40 | 284 | 17 | 265 | 1.41e-19 | 86.3 |
| Msa1404170 | AT1G61170.1 | 38.298 | 188 | 86 | 5 | 102 | 284 | 89 | 251 | 5.59e-16 | 76.3 |
Find 78 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTTGGTTTCTTCCATT+TGG | 0.164688 | tig0023028:-82148 | None:intergenic |
| GAAATTTGATAGAGAGAATA+AGG | 0.211062 | tig0023028:+82209 | Msa1404170:CDS |
| TCATTTGGTTTCTTCCATTT+GGG | 0.279406 | tig0023028:-82147 | None:intergenic |
| ATTCAACAGTGGAGAGTAAA+TGG | 0.305564 | tig0023028:+82715 | Msa1404170:CDS |
| AGAGACGCCGGCGAAGTTTC+CGG | 0.307275 | tig0023028:+82546 | Msa1404170:CDS |
| GGAGAACGGTGGCCGGAAAA+TGG | 0.313036 | tig0023028:+82689 | Msa1404170:CDS |
| TGGCCAAGCGTTGTTCCTCC+TGG | 0.332659 | tig0023028:+77523 | Msa1404170:CDS |
| GGAAAATCCACTTGTGTCAT+TGG | 0.355990 | tig0023028:+82764 | Msa1404170:CDS |
| GATCTCATCAACTTTATAGA+AGG | 0.365710 | tig0023028:-82241 | None:intergenic |
| AAGGCTGTTCTTCCCTTTCC+CGG | 0.367623 | tig0023028:-82663 | None:intergenic |
| TTAACTGTTTCTTCTTCAAC+AGG | 0.384629 | tig0023028:-82105 | None:intergenic |
| TTCTTCCCTTTCCCGGCGAT+TGG | 0.384873 | tig0023028:-82656 | None:intergenic |
| TCATATCTAAACCTTTCATT+TGG | 0.387597 | tig0023028:-82162 | None:intergenic |
| AAAGGGAAGAACAGCCTTGC+CGG | 0.391214 | tig0023028:+82668 | Msa1404170:CDS |
| CTCTCTTCTCTCACCGGAAA+AGG | 0.407732 | tig0023028:-82394 | None:intergenic |
| TGTGAAATGCTAGATCTTGA+TGG | 0.410155 | tig0023028:-82045 | None:intergenic |
| TGTTCAGAGGAGAGATCAAA+TGG | 0.422598 | tig0023028:+82491 | Msa1404170:CDS |
| AAGTTTCCGGCCGACGATCT+AGG | 0.423459 | tig0023028:+82559 | Msa1404170:CDS |
| GACTCATCATTAGCTGTAGA+TGG | 0.427911 | tig0023028:-82738 | None:intergenic |
| TCAAATTTCTCAAAACACTT+TGG | 0.432970 | tig0023028:-82195 | None:intergenic |
| GACTGCTCCGACCTTCTTGC+CGG | 0.434939 | tig0023028:-82435 | None:intergenic |
| AGGAAGAAGAATCTTGCAAA+AGG | 0.438874 | tig0023028:+82334 | Msa1404170:CDS |
| AAACTTCGCCGGCGTCTCTC+CGG | 0.444786 | tig0023028:-82542 | None:intergenic |
| AGGAGAGATCAAATGGGAAA+TGG | 0.445282 | tig0023028:+82498 | Msa1404170:CDS |
| AACAAACCAATCGCCGGGAA+AGG | 0.459022 | tig0023028:+82650 | Msa1404170:CDS |
| CTCCGGCGAAAAGGAATGTT+GGG | 0.469114 | tig0023028:+82457 | Msa1404170:CDS |
| CCGGCCACCGTTCTCCGGCA+AGG | 0.474190 | tig0023028:-82682 | None:intergenic |
| ACAAACCAATCGCCGGGAAA+GGG | 0.476850 | tig0023028:+82651 | Msa1404170:CDS |
| AAGAAGGTCGGAGCAGTCTC+CGG | 0.487899 | tig0023028:+82440 | Msa1404170:CDS |
| CGGAGCAGTCTCCGGCGAAA+AGG | 0.493736 | tig0023028:+82448 | Msa1404170:CDS |
| CTTGCCGGCGACTTTCTCGC+CGG | 0.497162 | tig0023028:-82420 | None:intergenic |
| GGCCAAGCGTTGTTCCTCCT+GGG | 0.500751 | tig0023028:+77524 | Msa1404170:CDS |
| TACAGCTAATGATGAGTCAC+TGG | 0.507954 | tig0023028:+82743 | Msa1404170:CDS |
| TTCCCAGGAGGAACAACGCT+TGG | 0.511563 | tig0023028:-77526 | None:intergenic |
| TGTTGTCAGAAACACCCAAA+TGG | 0.517393 | tig0023028:+82133 | Msa1404170:CDS |
| TCTCCGGCGAAAAGGAATGT+TGG | 0.528330 | tig0023028:+82456 | Msa1404170:CDS |
| GAATGAAGAATCAGCCTCAC+CGG | 0.529905 | tig0023028:+82523 | Msa1404170:CDS |
| TGTTGAAGAAGAAACAGTTA+AGG | 0.531213 | tig0023028:+82107 | Msa1404170:CDS |
| CCTTGCCGGAGAACGGTGGC+CGG | 0.531831 | tig0023028:+82682 | Msa1404170:CDS |
| CGGTGAGAGAAGAGAGTCTC+CGG | 0.532502 | tig0023028:+82401 | Msa1404170:CDS |
| ATTCGGCTCATGCGTAGCAC+TGG | 0.537824 | tig0023028:+77503 | None:intergenic |
| CAGCCTCACCGGAGAGACGC+CGG | 0.541053 | tig0023028:+82534 | Msa1404170:CDS |
| TGAGATCTCTGAAGTTTCTG+AGG | 0.544711 | tig0023028:+82257 | Msa1404170:CDS |
| AGGAAAACAAACCAATCGCC+GGG | 0.548205 | tig0023028:+82645 | Msa1404170:CDS |
| AGAACAGCCTTGCCGGAGAA+CGG | 0.548840 | tig0023028:+82675 | Msa1404170:CDS |
| TCGTCGGCCGGAAACTTCGC+CGG | 0.554308 | tig0023028:-82553 | None:intergenic |
| CGAGAAAGTCGCCGGCAAGA+AGG | 0.555971 | tig0023028:+82424 | Msa1404170:CDS |
| GGAAGAAGAATCTTGCAAAA+GGG | 0.556806 | tig0023028:+82335 | Msa1404170:CDS |
| TTTCATTGATAAGAGAGAAG+AGG | 0.558734 | tig0023028:+82314 | Msa1404170:CDS |
| GTCTCCGGCGAGAAAGTCGC+CGG | 0.564723 | tig0023028:+82416 | Msa1404170:CDS |
| AAGGAAAACAAACCAATCGC+CGG | 0.566599 | tig0023028:+82644 | Msa1404170:CDS |
| AGAGATCAAATGGGAAATGG+AGG | 0.567817 | tig0023028:+82501 | Msa1404170:CDS |
| AATGGAAGAAACCAAATGAA+AGG | 0.569819 | tig0023028:+82151 | Msa1404170:CDS |
| CCATTGTCAGTACGAGTAGC+CGG | 0.570807 | tig0023028:-82585 | None:intergenic |
| TCTAGCATTTCACAAGTGAA+AGG | 0.573120 | tig0023028:+82054 | Msa1404170:CDS |
| TGGTTCAACGAGATCTGTCG+TGG | 0.573822 | tig0023028:+82605 | Msa1404170:CDS |
| GTTCAGAGGAGAGATCAAAT+GGG | 0.576457 | tig0023028:+82492 | Msa1404170:CDS |
| GAATACTGAGTTCGATTCCC+AGG | 0.577729 | tig0023028:-77541 | None:intergenic |
| CGGAGACTCTCTTCTCTCAC+CGG | 0.579715 | tig0023028:-82400 | None:intergenic |
| CAACGAGATCTGTCGTGGGT+CGG | 0.580336 | tig0023028:+82610 | Msa1404170:CDS |
| CGGCCGACGATCTAGGTCGC+CGG | 0.588380 | tig0023028:+82566 | Msa1404170:CDS |
| AAGCATTCCAATGACACAAG+TGG | 0.592757 | tig0023028:-82771 | None:intergenic |
| CCGGCTACTCGTACTGACAA+TGG | 0.600535 | tig0023028:+82585 | Msa1404170:CDS |
| GAATCTTGCAAAAGGGTCAA+CGG | 0.602033 | tig0023028:+82342 | Msa1404170:CDS |
| AAAGTCGCCGGCAAGAAGGT+CGG | 0.608055 | tig0023028:+82428 | Msa1404170:CDS |
| GGCGAAAAGGAATGTTGGGT+CGG | 0.609373 | tig0023028:+82461 | Msa1404170:CDS |
| CGGCGACCTAGATCGTCGGC+CGG | 0.611451 | tig0023028:-82565 | None:intergenic |
| TCGCCGGCGTCTCTCCGGTG+AGG | 0.626235 | tig0023028:-82537 | None:intergenic |
| TCTTCTTCAACAGGAACACA+AGG | 0.632166 | tig0023028:-82096 | None:intergenic |
| TGGGTCGGAGCTTATCTGCA+AGG | 0.638945 | tig0023028:+82625 | Msa1404170:CDS |
| GGTCGGCGAGGATTGTTCAG+AGG | 0.639198 | tig0023028:+82478 | Msa1404170:CDS |
| TAGCCGGCGACCTAGATCGT+CGG | 0.649338 | tig0023028:-82569 | None:intergenic |
| ACAGCCTTGCCGGAGAACGG+TGG | 0.649383 | tig0023028:+82678 | Msa1404170:CDS |
| AAAGGAATGTTGGGTCGGCG+AGG | 0.657766 | tig0023028:+82466 | Msa1404170:CDS |
| TCTTCAACAGGAACACAAGG+TGG | 0.671847 | tig0023028:-82093 | None:intergenic |
| GAAAATGGAAAATTCAACAG+TGG | 0.675684 | tig0023028:+82704 | Msa1404170:CDS |
| GGTTCAACGAGATCTGTCGT+GGG | 0.679453 | tig0023028:+82606 | Msa1404170:CDS |
| TACTGAGTTCGATTCCCAGG+AGG | 0.706367 | tig0023028:-77538 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATATAAAAAAAAATA+TGG | - | tig0023028:77700-77719 | None:intergenic | 0.0% |
| !! | TAAAAATTAAATAACTCTTA+AGG | - | tig0023028:79027-79046 | None:intergenic | 10.0% |
| !!! | TTTGTTTATCAAATTTTAAA+TGG | - | tig0023028:79222-79241 | None:intergenic | 10.0% |
| !!! | AATTTTCATAAAACTATATA+AGG | - | tig0023028:79743-79762 | None:intergenic | 10.0% |
| !!! | TTATATAGTTTTATGAAAAT+TGG | + | tig0023028:79742-79761 | Msa1404170:intron | 10.0% |
| !!! | TATATAGTTTTATGAAAATT+GGG | + | tig0023028:79743-79762 | Msa1404170:intron | 10.0% |
| !!! | TACTTTTCATTTTTAAATTA+TGG | + | tig0023028:81046-81065 | Msa1404170:intron | 10.0% |
| !!! | TACTTTTCTTTTTAAAATTA+TGG | - | tig0023028:81175-81194 | None:intergenic | 10.0% |
| !! | TTTAAATTGCTAATATTAGT+TGG | + | tig0023028:77642-77661 | Msa1404170:intron | 15.0% |
| !!! | ATAACATTTTATTTGTTTGT+TGG | + | tig0023028:77965-77984 | Msa1404170:intron | 15.0% |
| !! | TCTTTGATTATATACATATA+AGG | + | tig0023028:78211-78230 | Msa1404170:intron | 15.0% |
| !! | AAACTAAATATTAGATGTAT+TGG | - | tig0023028:78334-78353 | None:intergenic | 15.0% |
| !!! | TATTTTTTAAGATTACACTT+TGG | - | tig0023028:80274-80293 | None:intergenic | 15.0% |
| !!! | ATTTTTCATTTCAATTTTGA+AGG | + | tig0023028:81505-81524 | Msa1404170:intron | 15.0% |
| !! | TTCAATAAAAACAATAACAT+AGG | + | tig0023028:81939-81958 | Msa1404170:intron | 15.0% |
| !! | ATCTATAAATTACACATGAT+AGG | - | tig0023028:77803-77822 | None:intergenic | 20.0% |
| !!! | TTAAATTACCATTTTTCCTT+TGG | - | tig0023028:77888-77907 | None:intergenic | 20.0% |
| !! | TCATACATAAACTTATAATG+AGG | + | tig0023028:78015-78034 | Msa1404170:intron | 20.0% |
| !!! | ACAATAGCTTTTAAATGAAT+CGG | + | tig0023028:78161-78180 | Msa1404170:intron | 20.0% |
| !! | CAAAACAAATCAAAAGATTA+TGG | + | tig0023028:78354-78373 | Msa1404170:intron | 20.0% |
| !! | AAAATATACTCAACAATGTA+TGG | - | tig0023028:78484-78503 | None:intergenic | 20.0% |
| !!! | TAGTCATTTTCACTAATAAT+TGG | + | tig0023028:78870-78889 | Msa1404170:intron | 20.0% |
| !! | AAATTAAATAACTCTTAAGG+TGG | - | tig0023028:79024-79043 | None:intergenic | 20.0% |
| !!! | CATATATCAAATTTTCCAAT+CGG | + | tig0023028:79185-79204 | Msa1404170:intron | 20.0% |
| !! | CAAATGTAAAACAACATTAA+TGG | + | tig0023028:79238-79257 | Msa1404170:intron | 20.0% |
| !! | TTTACATTAACTCTAATGTA+AGG | - | tig0023028:79373-79392 | None:intergenic | 20.0% |
| !! | TAAAAATTAAAAATCCGTGT+AGG | + | tig0023028:79389-79408 | Msa1404170:intron | 20.0% |
| !!! | ACTTCTTTTAAAAATTTGCA+CGG | - | tig0023028:79433-79452 | None:intergenic | 20.0% |
| !!! | ATGATAAATGACATTCATTT+TGG | - | tig0023028:79572-79591 | None:intergenic | 20.0% |
| !!! | TTAAATGTTGCTTTTCTATT+AGG | - | tig0023028:79815-79834 | None:intergenic | 20.0% |
| !! | AGAAAAGCAACATTTAATAA+AGG | + | tig0023028:79818-79837 | Msa1404170:intron | 20.0% |
| !! | AAGAAAAAACATTTCTTGTT+AGG | + | tig0023028:80512-80531 | Msa1404170:intron | 20.0% |
| !! | GGAAATAAAAGTTGTAAAAT+GGG | - | tig0023028:80593-80612 | None:intergenic | 20.0% |
| !!! | CAAACACACTTTTAAATTTT+AGG | - | tig0023028:80990-81009 | None:intergenic | 20.0% |
| !!! | CTAAAATTTAAAAGTGTGTT+TGG | + | tig0023028:80988-81007 | Msa1404170:intron | 20.0% |
| !!! | TTTTTAATCATGGTTGTATT+TGG | - | tig0023028:81373-81392 | None:intergenic | 20.0% |
| !!! | GTTTTATGAGTTTTTAATCA+TGG | - | tig0023028:81383-81402 | None:intergenic | 20.0% |
| !! | AAATTGGTTAACTTTATGTT+TGG | - | tig0023028:81650-81669 | None:intergenic | 20.0% |
| !! | ACAAGTAGTAAACATTAAAT+TGG | - | tig0023028:81666-81685 | None:intergenic | 20.0% |
| !! | AACAAATGGTAGTTAAAAAT+TGG | - | tig0023028:81771-81790 | None:intergenic | 20.0% |
| ! | TAAGAAAAAATATCGTCTCA+GGG | + | tig0023028:77773-77792 | Msa1404170:intron | 25.0% |
| ! | GTTTGCACATTATATTTCAA+AGG | + | tig0023028:77987-78006 | Msa1404170:intron | 25.0% |
| ! | TGTTACATATATAGGAACTT+TGG | - | tig0023028:78083-78102 | None:intergenic | 25.0% |
| ! | TTTCGCATTGTTACATATAT+AGG | - | tig0023028:78091-78110 | None:intergenic | 25.0% |
| ! | ACGTATCCACAAATATATAA+TGG | + | tig0023028:78278-78297 | Msa1404170:intron | 25.0% |
| ! | GGTATACCATTATATATTTG+TGG | - | tig0023028:78287-78306 | None:intergenic | 25.0% |
| ! | TGCAAATTTAGCCTATTTAT+AGG | + | tig0023028:78589-78608 | Msa1404170:intron | 25.0% |
| ! | TCTATGATTGTCCTATAAAT+AGG | - | tig0023028:78603-78622 | None:intergenic | 25.0% |
| ! | TATTTATAGGACAATCATAG+AGG | + | tig0023028:78602-78621 | Msa1404170:intron | 25.0% |
| ! | AAAACGTGTAGTGAAATATT+TGG | - | tig0023028:78810-78829 | None:intergenic | 25.0% |
| ! | AGTGTACAGCAAAAAAATTA+AGG | - | tig0023028:78930-78949 | None:intergenic | 25.0% |
| ! | TAAAAGTTAACAATCCATGA+GGG | - | tig0023028:79000-79019 | None:intergenic | 25.0% |
| ! | ATAAAAGTTAACAATCCATG+AGG | - | tig0023028:79001-79020 | None:intergenic | 25.0% |
| ! | TGTGAAAATTATTTCGCAAT+TGG | - | tig0023028:79065-79084 | None:intergenic | 25.0% |
| ! | GCAAAAAAAAGAGAGTTTAA+TGG | - | tig0023028:79089-79108 | None:intergenic | 25.0% |
| ! | CCTTAAAAAAAACTATTGTG+AGG | - | tig0023028:79350-79369 | None:intergenic | 25.0% |
| !!! | CCTCACAATAGTTTTTTTTA+AGG | + | tig0023028:79347-79366 | Msa1404170:intron | 25.0% |
| ! | CTATATAAGGCAATGTTAAT+TGG | - | tig0023028:79730-79749 | None:intergenic | 25.0% |
| ! | TACACATTAATCCTATTTCA+AGG | + | tig0023028:79981-80000 | Msa1404170:intron | 25.0% |
| ! | AATCTATTGCTTTCATTACT+TGG | - | tig0023028:80204-80223 | None:intergenic | 25.0% |
| ! | ATCCTTAAATCATTACTGAA+AGG | + | tig0023028:80225-80244 | Msa1404170:intron | 25.0% |
| ! | TTCCTTTCAGTAATGATTTA+AGG | - | tig0023028:80230-80249 | None:intergenic | 25.0% |
| ! | CAAAACATGTATATTTGACT+TGG | - | tig0023028:80404-80423 | None:intergenic | 25.0% |
| !!! | GTCAAATATACATGTTTTGA+CGG | + | tig0023028:80405-80424 | Msa1404170:intron | 25.0% |
| ! | TTTACCAATGCATTAGAAAA+TGG | - | tig0023028:80481-80500 | None:intergenic | 25.0% |
| ! | GGGAAATAAAAGTTGTAAAA+TGG | - | tig0023028:80594-80613 | None:intergenic | 25.0% |
| ! | TAAAACTGTCATTAACTAAG+TGG | + | tig0023028:80952-80971 | Msa1404170:intron | 25.0% |
| ! | TTCTACTGTAAAATGGATAT+AGG | - | tig0023028:81304-81323 | None:intergenic | 25.0% |
| ! | GAGATATAAAAAGCAACAAA+TGG | - | tig0023028:81785-81804 | None:intergenic | 25.0% |
| !!! | AAAGGTAGTTTTTTCTACTA+AGG | - | tig0023028:81869-81888 | None:intergenic | 25.0% |
| !!! | ATAGTTTTACCAACACAAAA+TGG | + | tig0023028:81964-81983 | Msa1404170:intron | 25.0% |
| !!! | TAGTTTTACCAACACAAAAT+GGG | + | tig0023028:81965-81984 | Msa1404170:intron | 25.0% |
| !!! | AAAATCATTGTGTTTTGTTG+TGG | - | tig0023028:82022-82041 | None:intergenic | 25.0% |
| ! | TCATATCTAAACCTTTCATT+TGG | - | tig0023028:82165-82184 | None:intergenic | 25.0% |
| ! | TCAAATTTCTCAAAACACTT+TGG | - | tig0023028:82198-82217 | None:intergenic | 25.0% |
| ! | GAAATTTGATAGAGAGAATA+AGG | + | tig0023028:82209-82228 | Msa1404170:CDS | 25.0% |
| GGAGACATTCACTAATAAAA+AGG | - | tig0023028:77679-77698 | None:intergenic | 30.0% | |
| TACAAATATCTCTCAGCATT+CGG | - | tig0023028:77755-77774 | None:intergenic | 30.0% | |
| GTAAGAAAAAATATCGTCTC+AGG | + | tig0023028:77772-77791 | Msa1404170:intron | 30.0% | |
| !!! | TTATGGGATTTTGAAGCAAA+GGG | - | tig0023028:78442-78461 | None:intergenic | 30.0% |
| !!! | TTTATGGGATTTTGAAGCAA+AGG | - | tig0023028:78443-78462 | None:intergenic | 30.0% |
| TCTTCTACACGTTTATTTGT+AGG | + | tig0023028:78952-78971 | Msa1404170:intron | 30.0% | |
| CTTCTACACGTTTATTTGTA+GGG | + | tig0023028:78953-78972 | Msa1404170:intron | 30.0% | |
| !! | TTTTATATCACTAGCCTACA+CGG | - | tig0023028:79406-79425 | None:intergenic | 30.0% |
| ! | TTTTGGTCATATGATTGTCA+CGG | - | tig0023028:79555-79574 | None:intergenic | 30.0% |
| TTTAATCATCATTTGCCAAG+TGG | + | tig0023028:79769-79788 | Msa1404170:intron | 30.0% | |
| !!! | CTAAGTGTTTTTTTTCCTGA+AGG | - | tig0023028:80081-80100 | None:intergenic | 30.0% |
| ! | GATTACACTTTGGAGAAATA+TGG | - | tig0023028:80264-80283 | None:intergenic | 30.0% |
| TAATAGAAGCTTATCCACAA+AGG | - | tig0023028:80354-80373 | None:intergenic | 30.0% | |
| TTTGTGGATAAGCTTCTATT+AGG | + | tig0023028:80353-80372 | Msa1404170:intron | 30.0% | |
| !! | AACATGTATATTTGACTTGG+AGG | - | tig0023028:80401-80420 | None:intergenic | 30.0% |
| TCATTCCGAAGATAAATATG+AGG | + | tig0023028:80441-80460 | Msa1404170:intron | 30.0% | |
| AGCTACCTCATATTTATCTT+CGG | - | tig0023028:80449-80468 | None:intergenic | 30.0% | |
| AAAATCATCGCTCAGATAAT+TGG | - | tig0023028:80547-80566 | None:intergenic | 30.0% | |
| CACTTGAGAAAACTTAGTTT+AGG | + | tig0023028:81260-81279 | Msa1404170:intron | 30.0% | |
| CTGTAAAATGGATATAGGTT+TGG | - | tig0023028:81299-81318 | None:intergenic | 30.0% | |
| ! | AACTAGCTTCTACTGTAAAA+TGG | - | tig0023028:81311-81330 | None:intergenic | 30.0% |
| AGTTATCCTCTCAAATGTTA+AGG | + | tig0023028:81327-81346 | Msa1404170:intron | 30.0% | |
| TTGGAGTATACTTTAAGTCT+CGG | - | tig0023028:81445-81464 | None:intergenic | 30.0% | |
| TTAAAAATTGGACAGGTCAA+TGG | - | tig0023028:81759-81778 | None:intergenic | 30.0% | |
| ATGGTAGTTAAAAATTGGAC+AGG | - | tig0023028:81766-81785 | None:intergenic | 30.0% | |
| GAAAACATAGATATCAACGT+AGG | - | tig0023028:81922-81941 | None:intergenic | 30.0% | |
| ! | TTAACTGTTTCTTCTTCAAC+AGG | - | tig0023028:82108-82127 | None:intergenic | 30.0% |
| TGTTGAAGAAGAAACAGTTA+AGG | + | tig0023028:82107-82126 | Msa1404170:CDS | 30.0% | |
| ! | TCATTTGGTTTCTTCCATTT+GGG | - | tig0023028:82150-82169 | None:intergenic | 30.0% |
| ! | TTCATTTGGTTTCTTCCATT+TGG | - | tig0023028:82151-82170 | None:intergenic | 30.0% |
| AATGGAAGAAACCAAATGAA+AGG | + | tig0023028:82151-82170 | Msa1404170:CDS | 30.0% | |
| GATCTCATCAACTTTATAGA+AGG | - | tig0023028:82244-82263 | None:intergenic | 30.0% | |
| TTTCATTGATAAGAGAGAAG+AGG | + | tig0023028:82314-82333 | Msa1404170:CDS | 30.0% | |
| ! | CTGTTGAATTTTCCATTTTC+CGG | - | tig0023028:82704-82723 | None:intergenic | 30.0% |
| GAAAATGGAAAATTCAACAG+TGG | + | tig0023028:82704-82723 | Msa1404170:CDS | 30.0% | |
| GTATATAAGCCAAGTTGCTT+GGG | - | tig0023028:77606-77625 | None:intergenic | 35.0% | |
| TGTATATAAGCCAAGTTGCT+TGG | - | tig0023028:77607-77626 | None:intergenic | 35.0% | |
| GAAACTTCTTACCGATAACA+TGG | + | tig0023028:77859-77878 | Msa1404170:intron | 35.0% | |
| ! | TCCTTTGGTTTCCATGTTAT+CGG | - | tig0023028:77873-77892 | None:intergenic | 35.0% |
| CATGGAAACCAAAGGAAAAA+TGG | + | tig0023028:77877-77896 | Msa1404170:intron | 35.0% | |
| AGCTATTGTGTGTTTCCATA+GGG | - | tig0023028:78150-78169 | None:intergenic | 35.0% | |
| AAGCTATTGTGTGTTTCCAT+AGG | - | tig0023028:78151-78170 | None:intergenic | 35.0% | |
| ! | TCTCCTTTTACTAAGCATAG+GGG | - | tig0023028:78415-78434 | None:intergenic | 35.0% |
| ! | CTCTCCTTTTACTAAGCATA+GGG | - | tig0023028:78416-78435 | None:intergenic | 35.0% |
| ! | TCTCTCCTTTTACTAAGCAT+AGG | - | tig0023028:78417-78436 | None:intergenic | 35.0% |
| ! | GCATACTTCTGAAAAAGAGA+AGG | + | tig0023028:78541-78560 | Msa1404170:intron | 35.0% |
| ! | ATCAAATTTTCCAATCGGAG+AGG | + | tig0023028:79190-79209 | Msa1404170:intron | 35.0% |
| ! | CATATGATTGTCACGGATTA+AGG | - | tig0023028:79548-79567 | None:intergenic | 35.0% |
| !! | TGCAAAGCTTTGAGTGTTAT+TGG | - | tig0023028:80127-80146 | None:intergenic | 35.0% |
| ! | ACACTTTGGAGAAATATGGT+TGG | - | tig0023028:80260-80279 | None:intergenic | 35.0% |
| ! | TATCCACAAAGGTACAATAG+TGG | - | tig0023028:80343-80362 | None:intergenic | 35.0% |
| TGGATAAGCTTCTATTAGGT+TGG | + | tig0023028:80357-80376 | Msa1404170:intron | 35.0% | |
| ! | CGTTCCATTTTCTAATGCAT+TGG | + | tig0023028:80474-80493 | Msa1404170:intron | 35.0% |
| ATCGCTCAGATAATTGGATT+CGG | - | tig0023028:80541-80560 | None:intergenic | 35.0% | |
| TATTCTTCGTAGAAGATCGA+GGG | - | tig0023028:80622-80641 | None:intergenic | 35.0% | |
| TTATTCTTCGTAGAAGATCG+AGG | - | tig0023028:80623-80642 | None:intergenic | 35.0% | |
| TTCTTTATCGCTCTCTCTAT+TGG | - | tig0023028:80711-80730 | None:intergenic | 35.0% | |
| AAACTTAGAGAGATAGAGAG+CGG | - | tig0023028:80855-80874 | None:intergenic | 35.0% | |
| TTTGAATTGAGGGTTTAGGA+GGG | - | tig0023028:81215-81234 | None:intergenic | 35.0% | |
| TGTGTTTGAATTGAGGGTTT+AGG | - | tig0023028:81219-81238 | None:intergenic | 35.0% | |
| TTAGGGTGTGTTTGAATTGA+GGG | - | tig0023028:81225-81244 | None:intergenic | 35.0% | |
| ! | TTTAGGGTGTGTTTGAATTG+AGG | - | tig0023028:81226-81245 | None:intergenic | 35.0% |
| CAATTCAAACACACCCTAAA+AGG | + | tig0023028:81226-81245 | Msa1404170:intron | 35.0% | |
| TCACTTCCTTAACATTTGAG+AGG | - | tig0023028:81336-81355 | None:intergenic | 35.0% | |
| TTCTCCATGTGTAACTAGAA+AGG | + | tig0023028:81411-81430 | Msa1404170:intron | 35.0% | |
| !! | GTTACCTTTCTAGTTACACA+TGG | - | tig0023028:81418-81437 | None:intergenic | 35.0% |
| GTATACTTTAAGTCTCGGTA+AGG | - | tig0023028:81440-81459 | None:intergenic | 35.0% | |
| ! | AAATTTGGTTGGTGTGTCAT+GGG | - | tig0023028:81893-81912 | None:intergenic | 35.0% |
| ! | AAAATTTGGTTGGTGTGTCA+TGG | - | tig0023028:81894-81913 | None:intergenic | 35.0% |
| GTAGGTTGTGAAAATTTGGT+TGG | - | tig0023028:81904-81923 | None:intergenic | 35.0% | |
| CAACGTAGGTTGTGAAAATT+TGG | - | tig0023028:81908-81927 | None:intergenic | 35.0% | |
| TGTGAAATGCTAGATCTTGA+TGG | - | tig0023028:82048-82067 | None:intergenic | 35.0% | |
| TCTAGCATTTCACAAGTGAA+AGG | + | tig0023028:82054-82073 | Msa1404170:CDS | 35.0% | |
| AGGAAGAAGAATCTTGCAAA+AGG | + | tig0023028:82334-82353 | Msa1404170:CDS | 35.0% | |
| GGAAGAAGAATCTTGCAAAA+GGG | + | tig0023028:82335-82354 | Msa1404170:CDS | 35.0% | |
| ATTCAACAGTGGAGAGTAAA+TGG | + | tig0023028:82715-82734 | Msa1404170:CDS | 35.0% | |
| CAGCATTCGGATCAATTCAT+CGG | - | tig0023028:77742-77761 | None:intergenic | 40.0% | |
| ACCGATAACATGGAAACCAA+AGG | + | tig0023028:77869-77888 | Msa1404170:intron | 40.0% | |
| AATACATGTCGCAAACCCTA+TGG | + | tig0023028:78132-78151 | Msa1404170:intron | 40.0% | |
| TTTCCTAACCTCATGTGCAT+GGG | - | tig0023028:78308-78327 | None:intergenic | 40.0% | |
| ! | TTTTCCTAACCTCATGTGCA+TGG | - | tig0023028:78309-78328 | None:intergenic | 40.0% |
| TCACCCCTATGCTTAGTAAA+AGG | + | tig0023028:78409-78428 | Msa1404170:intron | 40.0% | |
| AAGAGAAGGAAGAAACGATG+TGG | + | tig0023028:78555-78574 | Msa1404170:intron | 40.0% | |
| ! | TTTTGTTCAAGTGACCCTCA+TGG | + | tig0023028:78983-79002 | Msa1404170:intron | 40.0% |
| ATCCTATTTCAAGGCCAAGA+AGG | + | tig0023028:79990-80009 | Msa1404170:intron | 40.0% | |
| AGTCCAAGTAGAAGGAGAAA+TGG | + | tig0023028:80016-80035 | Msa1404170:intron | 40.0% | |
| GTCCAAGTAGAAGGAGAAAT+GGG | + | tig0023028:80017-80036 | Msa1404170:intron | 40.0% | |
| CTTGAGATTTCAACTCCTTC+AGG | + | tig0023028:80063-80082 | Msa1404170:intron | 40.0% | |
| !!! | TTTTTGTGCTTGGTGTAGGA+TGG | - | tig0023028:80316-80335 | None:intergenic | 40.0% |
| ATCCTACACCAAGCACAAAA+AGG | + | tig0023028:80315-80334 | Msa1404170:intron | 40.0% | |
| !!! | ATCCTTTTTGTGCTTGGTGT+AGG | - | tig0023028:80320-80339 | None:intergenic | 40.0% |
| !! | TAGTGGATCCTTTTTGTGCT+TGG | - | tig0023028:80326-80345 | None:intergenic | 40.0% |
| GATCCACTATTGTACCTTTG+TGG | + | tig0023028:80337-80356 | Msa1404170:intron | 40.0% | |
| TCGCTCAGATAATTGGATTC+GGG | - | tig0023028:80540-80559 | None:intergenic | 40.0% | |
| AACTTAGAGAGATAGAGAGC+GGG | - | tig0023028:80854-80873 | None:intergenic | 40.0% | |
| TTGAATTGAGGGTTTAGGAG+GGG | - | tig0023028:81214-81233 | None:intergenic | 40.0% | |
| GTTTGAATTGAGGGTTTAGG+AGG | - | tig0023028:81216-81235 | None:intergenic | 40.0% | |
| !! | TGTCGCTTCTCATCCTTTTA+GGG | - | tig0023028:81242-81261 | None:intergenic | 40.0% |
| ATGGTTGTATTTGGAGAGTG+AGG | - | tig0023028:81364-81383 | None:intergenic | 40.0% | |
| AAATTGGACAGGTCAATGGA+TGG | - | tig0023028:81755-81774 | None:intergenic | 40.0% | |
| ! | GTGACTAGTTGAACAAGAAG+AGG | - | tig0023028:81819-81838 | None:intergenic | 40.0% |
| ! | CACAACAACCCATTTTGTGT+TGG | - | tig0023028:81976-81995 | None:intergenic | 40.0% |
| TCTTCTTCAACAGGAACACA+AGG | - | tig0023028:82099-82118 | None:intergenic | 40.0% | |
| TGTTGTCAGAAACACCCAAA+TGG | + | tig0023028:82133-82152 | Msa1404170:CDS | 40.0% | |
| !! | TGAGATCTCTGAAGTTTCTG+AGG | + | tig0023028:82257-82276 | Msa1404170:CDS | 40.0% |
| GAATCTTGCAAAAGGGTCAA+CGG | + | tig0023028:82342-82361 | Msa1404170:CDS | 40.0% | |
| !! | ACCATTTTTGCGCATTTTCG+CGG | - | tig0023028:82373-82392 | None:intergenic | 40.0% |
| ! | CGCAAAAATGGTTCCTTTTC+CGG | + | tig0023028:82381-82400 | Msa1404170:CDS | 40.0% |
| TGTTCAGAGGAGAGATCAAA+TGG | + | tig0023028:82491-82510 | Msa1404170:CDS | 40.0% | |
| GTTCAGAGGAGAGATCAAAT+GGG | + | tig0023028:82492-82511 | Msa1404170:CDS | 40.0% | |
| AGGAGAGATCAAATGGGAAA+TGG | + | tig0023028:82498-82517 | Msa1404170:CDS | 40.0% | |
| AGAGATCAAATGGGAAATGG+AGG | + | tig0023028:82501-82520 | Msa1404170:CDS | 40.0% | |
| AAGGAAAACAAACCAATCGC+CGG | + | tig0023028:82644-82663 | Msa1404170:CDS | 40.0% | |
| GACTCATCATTAGCTGTAGA+TGG | - | tig0023028:82741-82760 | None:intergenic | 40.0% | |
| TACAGCTAATGATGAGTCAC+TGG | + | tig0023028:82743-82762 | Msa1404170:CDS | 40.0% | |
| GGAAAATCCACTTGTGTCAT+TGG | + | tig0023028:82764-82783 | Msa1404170:CDS | 40.0% | |
| AAGCATTCCAATGACACAAG+TGG | - | tig0023028:82774-82793 | None:intergenic | 40.0% | |
| GAATACTGAGTTCGATTCCC+AGG | - | tig0023028:77544-77563 | None:intergenic | 45.0% | |
| CATTCGGATCAATTCATCGG+TGG | - | tig0023028:77739-77758 | None:intergenic | 45.0% | |
| ATGGTATACCCATGCACATG+AGG | + | tig0023028:78297-78316 | Msa1404170:intron | 45.0% | |
| ATACCCATGCACATGAGGTT+AGG | + | tig0023028:78302-78321 | Msa1404170:intron | 45.0% | |
| AGAAGGAAGAAACGATGTGG+CGG | + | tig0023028:78558-78577 | Msa1404170:intron | 45.0% | |
| ! | CACATATGCATTGTGCCACT+TGG | - | tig0023028:79787-79806 | None:intergenic | 45.0% |
| CAAGTGGCACAATGCATATG+TGG | + | tig0023028:79785-79804 | Msa1404170:intron | 45.0% | |
| !! | CTCCTTCTTGGCCTTGAAAT+AGG | - | tig0023028:79995-80014 | None:intergenic | 45.0% |
| CTATTTCAAGGCCAAGAAGG+AGG | + | tig0023028:79993-80012 | Msa1404170:intron | 45.0% | |
| CTCCCATTTCTCCTTCTACT+TGG | - | tig0023028:80022-80041 | None:intergenic | 45.0% | |
| GCTCAGATAATTGGATTCGG+GGG | - | tig0023028:80538-80557 | None:intergenic | 45.0% | |
| CGCTCAGATAATTGGATTCG+GGG | - | tig0023028:80539-80558 | None:intergenic | 45.0% | |
| GTAGAAGATCGAGGGAGATA+GGG | - | tig0023028:80614-80633 | None:intergenic | 45.0% | |
| ACTTAGAGAGATAGAGAGCG+GGG | - | tig0023028:80853-80872 | None:intergenic | 45.0% | |
| !!! | GTGTCGCTTCTCATCCTTTT+AGG | - | tig0023028:81243-81262 | None:intergenic | 45.0% |
| TCTTCAACAGGAACACAAGG+TGG | - | tig0023028:82096-82115 | None:intergenic | 45.0% | |
| !! | CCATTTTTGCGCATTTTCGC+GGG | - | tig0023028:82372-82391 | None:intergenic | 45.0% |
| GAATGAAGAATCAGCCTCAC+CGG | + | tig0023028:82523-82542 | Msa1404170:CDS | 45.0% | |
| AGGAAAACAAACCAATCGCC+GGG | + | tig0023028:82645-82664 | Msa1404170:CDS | 45.0% | |
| !!! | AATTTAAAAACTTTTAAATA+TGG | - | tig0023028:77630-77649 | None:intergenic | 5.0% |
| !!! | AGTTTTTTTTTTTTTTTTAT+GGG | - | tig0023028:78458-78477 | None:intergenic | 5.0% |
| !!! | AAGTTTTTTTTTTTTTTTTA+TGG | - | tig0023028:78459-78478 | None:intergenic | 5.0% |
| !! | AAAAAAATTAATGTTAAAAT+TGG | + | tig0023028:79290-79309 | Msa1404170:intron | 5.0% |
| !!! | AAATATTTCTTTTAAATTTT+TGG | - | tig0023028:80905-80924 | None:intergenic | 5.0% |
| !!! | ATTATAACTAAATTTAATTT+TGG | - | tig0023028:81464-81483 | None:intergenic | 5.0% |
| TACTGAGTTCGATTCCCAGG+AGG | - | tig0023028:77541-77560 | None:intergenic | 50.0% | |
| GTATTCCCCGAGTATGTCCT+TGG | + | tig0023028:77558-77577 | Msa1404170:intron | 50.0% | |
| TCCTTCCAAGGACATACTCG+GGG | - | tig0023028:77566-77585 | None:intergenic | 50.0% | |
| CTCCTTCCAAGGACATACTC+GGG | - | tig0023028:77567-77586 | None:intergenic | 50.0% | |
| GCTCCTTCCAAGGACATACT+CGG | - | tig0023028:77568-77587 | None:intergenic | 50.0% | |
| ATGGCAATGAGCTCCTTCCA+AGG | - | tig0023028:77578-77597 | None:intergenic | 50.0% | |
| TGGAAGGAGCTCATTGCCAT+TGG | + | tig0023028:77578-77597 | Msa1404170:intron | 50.0% | |
| CCAAGTTGCTTGGGTTCCAA+TGG | - | tig0023028:77597-77616 | None:intergenic | 50.0% | |
| CCATTGGAACCCAAGCAACT+TGG | + | tig0023028:77594-77613 | Msa1404170:intron | 50.0% | |
| ! | AGAAACGATGTGGCGGAAAG+TGG | + | tig0023028:78565-78584 | Msa1404170:intron | 50.0% |
| CTACTTGGACTCCTCCTTCT+TGG | - | tig0023028:80007-80026 | None:intergenic | 50.0% | |
| GAAGGAGGAGTCCAAGTAGA+AGG | + | tig0023028:80008-80027 | Msa1404170:intron | 50.0% | |
| TGGTGTAGGATGGAAGGAGA+GGG | - | tig0023028:80306-80325 | None:intergenic | 50.0% | |
| TTGGTGTAGGATGGAAGGAG+AGG | - | tig0023028:80307-80326 | None:intergenic | 50.0% | |
| !! | TGTGCTTGGTGTAGGATGGA+AGG | - | tig0023028:80312-80331 | None:intergenic | 50.0% |
| CGTAGAAGATCGAGGGAGAT+AGG | - | tig0023028:80615-80634 | None:intergenic | 50.0% | |
| CTTAGAGAGATAGAGAGCGG+GGG | - | tig0023028:80852-80871 | None:intergenic | 50.0% | |
| TTAGGAGGGGAAGAGATGAG+AGG | + | tig0023028:81020-81039 | Msa1404170:intron | 50.0% | |
| TAGGAGGGGAAGAGATGAGA+GGG | + | tig0023028:81021-81040 | Msa1404170:intron | 50.0% | |
| TTGAGGGTTTAGGAGGGGAA+GGG | - | tig0023028:81209-81228 | None:intergenic | 50.0% | |
| ATTGAGGGTTTAGGAGGGGA+AGG | - | tig0023028:81210-81229 | None:intergenic | 50.0% | |
| TGGACAGGTCAATGGATGGA+AGG | - | tig0023028:81751-81770 | None:intergenic | 50.0% | |
| ! | GGTTGGTGTGTCATGGGAAA+AGG | - | tig0023028:81887-81906 | None:intergenic | 50.0% |
| CCCGCGAAAATGCGCAAAAA+TGG | + | tig0023028:82369-82388 | Msa1404170:CDS | 50.0% | |
| CTCTCTTCTCTCACCGGAAA+AGG | - | tig0023028:82397-82416 | None:intergenic | 50.0% | |
| TCTCCGGCGAAAAGGAATGT+TGG | + | tig0023028:82456-82475 | Msa1404170:CDS | 50.0% | |
| CTCCGGCGAAAAGGAATGTT+GGG | + | tig0023028:82457-82476 | Msa1404170:CDS | 50.0% | |
| ! | GACCCAACATTCCTTTTCGC+CGG | - | tig0023028:82462-82481 | None:intergenic | 50.0% |
| GGCGAAAAGGAATGTTGGGT+CGG | + | tig0023028:82461-82480 | Msa1404170:CDS | 50.0% | |
| CCATTGTCAGTACGAGTAGC+CGG | - | tig0023028:82588-82607 | None:intergenic | 50.0% | |
| TGGTTCAACGAGATCTGTCG+TGG | + | tig0023028:82605-82624 | Msa1404170:CDS | 50.0% | |
| GGTTCAACGAGATCTGTCGT+GGG | + | tig0023028:82606-82625 | Msa1404170:CDS | 50.0% | |
| AACAAACCAATCGCCGGGAA+AGG | + | tig0023028:82650-82669 | Msa1404170:CDS | 50.0% | |
| ACAAACCAATCGCCGGGAAA+GGG | + | tig0023028:82651-82670 | Msa1404170:CDS | 50.0% | |
| AAGGCTGTTCTTCCCTTTCC+CGG | - | tig0023028:82666-82685 | None:intergenic | 50.0% | |
| AAAGGGAAGAACAGCCTTGC+CGG | + | tig0023028:82668-82687 | Msa1404170:CDS | 50.0% | |
| TTCCCAGGAGGAACAACGCT+TGG | - | tig0023028:77529-77548 | None:intergenic | 55.0% | |
| TCCCCGAGTATGTCCTTGGA+AGG | + | tig0023028:77562-77581 | Msa1404170:intron | 55.0% | |
| ATGGCGTGATCCTCTCCGAT+TGG | - | tig0023028:79203-79222 | None:intergenic | 55.0% | |
| CGGAGACTCTCTTCTCTCAC+CGG | - | tig0023028:82403-82422 | None:intergenic | 55.0% | |
| CGGTGAGAGAAGAGAGTCTC+CGG | + | tig0023028:82401-82420 | Msa1404170:CDS | 55.0% | |
| AAAGTCGCCGGCAAGAAGGT+CGG | + | tig0023028:82428-82447 | Msa1404170:CDS | 55.0% | |
| AAGAAGGTCGGAGCAGTCTC+CGG | + | tig0023028:82440-82459 | Msa1404170:CDS | 55.0% | |
| AAAGGAATGTTGGGTCGGCG+AGG | + | tig0023028:82466-82485 | Msa1404170:CDS | 55.0% | |
| AAGTTTCCGGCCGACGATCT+AGG | + | tig0023028:82559-82578 | Msa1404170:CDS | 55.0% | |
| ! | CCGGCTACTCGTACTGACAA+TGG | + | tig0023028:82585-82604 | Msa1404170:CDS | 55.0% |
| CAACGAGATCTGTCGTGGGT+CGG | + | tig0023028:82610-82629 | Msa1404170:CDS | 55.0% | |
| TGGGTCGGAGCTTATCTGCA+AGG | + | tig0023028:82625-82644 | Msa1404170:CDS | 55.0% | |
| TTCTTCCCTTTCCCGGCGAT+TGG | - | tig0023028:82659-82678 | None:intergenic | 55.0% | |
| AGAACAGCCTTGCCGGAGAA+CGG | + | tig0023028:82675-82694 | Msa1404170:CDS | 55.0% | |
| ! | ATTTTCCGGCCACCGTTCTC+CGG | - | tig0023028:82690-82709 | None:intergenic | 55.0% |
| ! | TGGCCAAGCGTTGTTCCTCC+TGG | + | tig0023028:77523-77542 | Msa1404170:CDS | 60.0% |
| ! | GGCCAAGCGTTGTTCCTCCT+GGG | + | tig0023028:77524-77543 | Msa1404170:CDS | 60.0% |
| CGAGAAAGTCGCCGGCAAGA+AGG | + | tig0023028:82424-82443 | Msa1404170:CDS | 60.0% | |
| GACTGCTCCGACCTTCTTGC+CGG | - | tig0023028:82438-82457 | None:intergenic | 60.0% | |
| GGTCGGCGAGGATTGTTCAG+AGG | + | tig0023028:82478-82497 | Msa1404170:CDS | 60.0% | |
| AAACTTCGCCGGCGTCTCTC+CGG | - | tig0023028:82545-82564 | None:intergenic | 60.0% | |
| AGAGACGCCGGCGAAGTTTC+CGG | + | tig0023028:82546-82565 | Msa1404170:CDS | 60.0% | |
| TAGCCGGCGACCTAGATCGT+CGG | - | tig0023028:82572-82591 | None:intergenic | 60.0% | |
| GGAGAACGGTGGCCGGAAAA+TGG | + | tig0023028:82689-82708 | Msa1404170:CDS | 60.0% | |
| GTCTCCGGCGAGAAAGTCGC+CGG | + | tig0023028:82416-82435 | Msa1404170:CDS | 65.0% | |
| CTTGCCGGCGACTTTCTCGC+CGG | - | tig0023028:82423-82442 | None:intergenic | 65.0% | |
| CGGAGCAGTCTCCGGCGAAA+AGG | + | tig0023028:82448-82467 | Msa1404170:CDS | 65.0% | |
| TCGTCGGCCGGAAACTTCGC+CGG | - | tig0023028:82556-82575 | None:intergenic | 65.0% | |
| ACAGCCTTGCCGGAGAACGG+TGG | + | tig0023028:82678-82697 | Msa1404170:CDS | 65.0% | |
| CAGCCTCACCGGAGAGACGC+CGG | + | tig0023028:82534-82553 | Msa1404170:CDS | 70.0% | |
| CGGCGACCTAGATCGTCGGC+CGG | - | tig0023028:82568-82587 | None:intergenic | 70.0% | |
| CGGCCGACGATCTAGGTCGC+CGG | + | tig0023028:82566-82585 | Msa1404170:CDS | 70.0% | |
| CCTTGCCGGAGAACGGTGGC+CGG | + | tig0023028:82682-82701 | Msa1404170:CDS | 70.0% | |
| TCGCCGGCGTCTCTCCGGTG+AGG | - | tig0023028:82540-82559 | None:intergenic | 75.0% | |
| CCGGCCACCGTTCTCCGGCA+AGG | - | tig0023028:82685-82704 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023028 | gene | 77512 | 82806 | 77512 | ID=Msa1404170;Name=Msa1404170 |
| tig0023028 | mRNA | 77512 | 82806 | 77512 | ID=Msa1404170-mRNA-1;Parent=Msa1404170;Name=Msa1404170-mRNA-1;_AED=0.22;_eAED=0.23;_QI=0|0|0|0.5|1|1|2|0|284 |
| tig0023028 | exon | 77512 | 77568 | 77512 | ID=Msa1404170-mRNA-1:exon:19616;Parent=Msa1404170-mRNA-1 |
| tig0023028 | exon | 82009 | 82806 | 82009 | ID=Msa1404170-mRNA-1:exon:19617;Parent=Msa1404170-mRNA-1 |
| tig0023028 | CDS | 77512 | 77568 | 77512 | ID=Msa1404170-mRNA-1:cds;Parent=Msa1404170-mRNA-1 |
| tig0023028 | CDS | 82009 | 82806 | 82009 | ID=Msa1404170-mRNA-1:cds;Parent=Msa1404170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
