AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0981010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0981010 MtrunA17_Chr6g0461591 92.674 273 8 2 1 273 1 261 0.0 514
Msa0981010 MtrunA17_Chr7g0253101 56.250 288 78 7 1 272 1 256 3.52e-99 291
Msa0981010 MtrunA17_Chr1g0146231 36.626 243 106 6 30 270 104 300 2.54e-36 132
Msa0981010 MtrunA17_Chr4g0035891 81.538 65 12 0 204 268 211 275 6.78e-34 124
Msa0981010 MtrunA17_Chr1g0199671 80.000 65 13 0 204 268 242 306 1.68e-33 124
Msa0981010 MtrunA17_Chr8g0372291 73.333 75 18 1 194 268 210 282 3.92e-33 122
Msa0981010 MtrunA17_Chr2g0326771 77.143 70 16 0 204 273 216 285 4.49e-33 122
Msa0981010 MtrunA17_Chr8g0340401 73.913 69 18 0 202 270 224 292 8.54e-33 122
Msa0981010 MtrunA17_Chr1g0213161 70.270 74 22 0 196 269 144 217 1.42e-32 119
Msa0981010 MtrunA17_Chr3g0140331 68.750 80 20 1 191 270 245 319 3.17e-32 121
Msa0981010 MtrunA17_Chr3g0145121 78.462 65 14 0 204 268 215 279 8.74e-32 119
Msa0981010 MtrunA17_Chr1g0169431 76.471 68 16 0 203 270 171 238 1.04e-31 117
Msa0981010 MtrunA17_Chr5g0404981 80.000 65 13 0 204 268 300 364 1.48e-31 120
Msa0981010 MtrunA17_Chr4g0028961 76.923 65 15 0 204 268 232 296 7.63e-31 117
Msa0981010 MtrunA17_Chr5g0395391 72.059 68 19 0 203 270 269 336 3.85e-30 115
Msa0981010 MtrunA17_Chr5g0395391 70.769 65 19 0 203 267 167 231 6.19e-28 109
Msa0981010 MtrunA17_Chr7g0232671 57.576 66 28 0 200 265 183 248 1.47e-20 88.2
Msa0981010 MtrunA17_Chr7g0232701 56.452 62 27 0 204 265 73 134 7.14e-19 80.9
Msa0981010 MtrunA17_Chr7g0232681 54.839 62 28 0 204 265 132 193 2.68e-18 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0981010 AT4G32890.1 39.583 240 85 9 35 270 80 263 2.53e-42 147
Msa0981010 AT5G25830.1 35.206 267 132 9 8 270 56 285 4.95e-37 134
Msa0981010 AT5G66320.2 35.849 265 119 7 16 268 88 313 7.26e-36 131
Msa0981010 AT5G66320.1 35.849 265 119 7 16 268 88 313 7.26e-36 131
Msa0981010 AT3G60530.1 79.710 69 14 0 202 270 156 224 1.04e-35 128
Msa0981010 AT2G45050.1 36.017 236 82 5 35 270 79 245 1.22e-35 129
Msa0981010 AT3G24050.1 75.000 68 17 0 203 270 193 260 8.75e-34 124
Msa0981010 AT4G36240.1 36.000 250 80 8 24 272 62 232 6.68e-33 120
Msa0981010 AT3G54810.1 67.470 83 26 1 186 268 212 293 1.80e-32 122
Msa0981010 AT3G54810.2 67.470 83 26 1 186 268 212 293 1.80e-32 122
Msa0981010 AT3G51080.1 81.538 65 12 0 204 268 221 285 3.17e-32 120
Msa0981010 AT1G08010.2 72.308 65 18 0 204 268 220 284 1.41e-31 119
Msa0981010 AT1G08010.1 72.308 65 18 0 204 268 220 284 1.41e-31 119
Msa0981010 AT1G08010.3 72.308 65 18 0 204 268 220 284 1.41e-31 119
Msa0981010 AT4G34680.1 73.846 65 17 0 204 268 180 244 1.76e-30 115
Msa0981010 AT4G34680.2 73.846 65 17 0 204 268 180 244 1.76e-30 115
Msa0981010 AT1G08000.2 57.778 90 34 1 179 268 197 282 2.89e-30 115
Msa0981010 AT1G08000.1 57.778 90 34 1 179 268 197 282 2.89e-30 115
Msa0981010 AT2G28340.1 42.105 133 71 2 141 270 128 257 8.96e-27 105
Msa0981010 AT3G45170.1 61.538 65 25 0 206 270 117 181 1.74e-25 100

Find 56 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGTTGAAACAAGCTTAT+TGG 0.158008 6_4:+19703468 Msa0981010:CDS
TGCAACAATGTATCAGTTTC+AGG 0.183831 6_4:+19702367 Msa0981010:CDS
CAGCTACTAGTACCAAAATT+TGG 0.280451 6_4:+19703399 Msa0981010:CDS
ATGTGAATGTGACCAAATTT+TGG 0.288556 6_4:-19703411 None:intergenic
AATTCCTCTTAAAATTGATT+AGG 0.307837 6_4:-19704007 None:intergenic
CATGCATTGCATAGTGTCTT+TGG 0.309772 6_4:-19703764 None:intergenic
ATGGTCCTGCCCTCCATTGT+GGG 0.318440 6_4:-19703736 None:intergenic
TGAGCAATCATCAAAATATC+TGG 0.332728 6_4:-19704114 None:intergenic
AAAAGAATAGAAGCAAGTTT+GGG 0.333116 6_4:-19702297 None:intergenic
TGAGTGCACCTTCTTGCATT+TGG 0.340927 6_4:-19703695 None:intergenic
TCTCAAATAGCTTAACCTAT+TGG 0.378475 6_4:+19704144 Msa0981010:three_prime_UTR
CCGTGTTGTGAGCAGGAAAA+AGG 0.381223 6_4:-19702423 None:intergenic
TAATTAGTGATTAGTGAAGT+TGG 0.399199 6_4:+19703921 Msa0981010:three_prime_UTR
ACAATGGAGGGCAGGACCAT+TGG 0.400380 6_4:+19703739 Msa0981010:CDS
AATGGTCCTGCCCTCCATTG+TGG 0.428822 6_4:-19703737 None:intergenic
TTGCAAATATCCATGTCTAT+AGG 0.443264 6_4:-19702349 None:intergenic
TGAATTTGAACATTAGAAGA+AGG 0.457759 6_4:-19703260 None:intergenic
GAGAATGCAATCTATTAAGT+AGG 0.465726 6_4:+19703895 Msa0981010:CDS
CAATGGAGGGCAGGACCATT+GGG 0.466961 6_4:+19703740 Msa0981010:CDS
CGGAGCAATGAGTTCGCTGT+CGG 0.489222 6_4:-19703495 None:intergenic
AGGGTGTGAAGAAGAAGAAG+AGG 0.489654 6_4:-19702326 None:intergenic
GTAGGTTGTTGCCAGAGTAT+AGG 0.492955 6_4:+19703807 Msa0981010:CDS
TTCGGAAGTTACGATCCAAT+AGG 0.494984 6_4:-19704159 None:intergenic
CATAGTGTCTTTGGTCCCAA+TGG 0.499888 6_4:-19703755 None:intergenic
CAAATATCCATGTCTATAGG+AGG 0.525607 6_4:-19702346 None:intergenic
TCAGGAAGTGGATTTAGGGA+TGG 0.532369 6_4:+19703178 Msa0981010:intron
AGACTAACCGTGTTGTGAGC+AGG 0.532480 6_4:-19702430 None:intergenic
GGGTGTGAAGAAGAAGAAGA+GGG 0.536817 6_4:-19702325 None:intergenic
TGCAAGTAGCTAACAAAAGT+AGG 0.538933 6_4:-19703842 None:intergenic
AGGACCCCACAATGGAGGGC+AGG 0.548944 6_4:+19703731 Msa0981010:CDS
TGGTCCTGCCCTCCATTGTG+GGG 0.559124 6_4:-19703735 None:intergenic
AAATGATAGATGATGTTGAT+TGG 0.560798 6_4:+19702134 Msa0981010:five_prime_UTR
AACATATTCCAAATGCAAGA+AGG 0.563153 6_4:+19703687 Msa0981010:CDS
AAGTGGATTTAGGGATGGAG+TGG 0.569403 6_4:+19703183 Msa0981010:CDS
AAGCTTGTTTCAACAAAGGA+GGG 0.570788 6_4:-19703463 None:intergenic
AGAATGCAATCTATTAAGTA+GGG 0.572327 6_4:+19703896 Msa0981010:CDS
GAAGGTGCTATGACACAACT+TGG 0.573345 6_4:-19703242 None:intergenic
TAAGCTTGTTTCAACAAAGG+AGG 0.573541 6_4:-19703464 None:intergenic
ATGGTACTCAGAGCTTCTGT+CGG 0.579340 6_4:-19702240 None:intergenic
CATTCACATCTTATAAGTGA+TGG 0.584037 6_4:+19703425 Msa0981010:CDS
TGTGGTGTGAGGTACAAGTC+TGG 0.585109 6_4:+19703785 Msa0981010:CDS
AATAGGTTAAGCTATTTGAG+AGG 0.586638 6_4:-19704142 None:intergenic
CAATAAGCTTGTTTCAACAA+AGG 0.588114 6_4:-19703467 None:intergenic
ACAAAGGACCCCACAATGGA+GGG 0.595325 6_4:+19703727 Msa0981010:CDS
GTGTGAGGTACAAGTCTGGT+AGG 0.597780 6_4:+19703789 Msa0981010:CDS
GCACTCATTGTTTGTCACAA+AGG 0.603068 6_4:+19703711 Msa0981010:CDS
CACAAAGGACCCCACAATGG+AGG 0.605327 6_4:+19703726 Msa0981010:CDS
TTCACACCCTCCTATAGACA+TGG 0.618913 6_4:+19702339 Msa0981010:exon
ACAAAAGTAGGACTCTTCGC+TGG 0.624466 6_4:-19703830 None:intergenic
AAAGTCTCTGCAGTTGCGTG+CGG 0.637759 6_4:+19703530 Msa0981010:CDS
AAAGAATAGAAGCAAGTTTG+GGG 0.646746 6_4:-19702296 None:intergenic
TGATGTTAATGATGATGATG+AGG 0.646926 6_4:+19703664 Msa0981010:CDS
AAATATCCATGTCTATAGGA+GGG 0.653251 6_4:-19702345 None:intergenic
TGTCACAAAGGACCCCACAA+TGG 0.681006 6_4:+19703723 Msa0981010:CDS
TATGCAATGCATGTGGTGTG+AGG 0.734829 6_4:+19703774 Msa0981010:CDS
AAGACACTATGCAATGCATG+TGG 0.764250 6_4:+19703767 Msa0981010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACGAAAAAAGTTAATTAAAT+TGG - chr6_4:19702197-19702216 None:intergenic 15.0%
!!! GATACTAAATTTGATTTTTT+TGG + chr6_4:19702948-19702967 Msa0981010:intron 15.0%
!! ACGAAAAAAGTTAATTAAAT+TGG - chr6_4:19702197-19702216 None:intergenic 15.0%
!!! GATACTAAATTTGATTTTTT+TGG + chr6_4:19702948-19702967 Msa0981010:intron 15.0%
!!! ATTTTTGTATGCATAGTTTT+TGG + chr6_4:19702543-19702562 Msa0981010:intron 20.0%
!! ATTTATGTATGCATAGAATT+CGG + chr6_4:19702771-19702790 Msa0981010:intron 20.0%
!!! TAGAATTTGGTAATACTTTA+AGG + chr6_4:19703044-19703063 Msa0981010:intron 20.0%
!!! TGATAATATTTGTTGCTTTT+TGG + chr6_4:19703137-19703156 Msa0981010:intron 20.0%
!! AATTCCTCTTAAAATTGATT+AGG - chr6_4:19704010-19704029 None:intergenic 20.0%
!!! TTTTAAGAGGAATTAAATCA+TGG + chr6_4:19704016-19704035 Msa0981010:three_prime_UTR 20.0%
!!! ATTTTTGTATGCATAGTTTT+TGG + chr6_4:19702543-19702562 Msa0981010:intron 20.0%
!! ATTTATGTATGCATAGAATT+CGG + chr6_4:19702771-19702790 Msa0981010:intron 20.0%
!!! TAGAATTTGGTAATACTTTA+AGG + chr6_4:19703044-19703063 Msa0981010:intron 20.0%
!!! TGATAATATTTGTTGCTTTT+TGG + chr6_4:19703137-19703156 Msa0981010:intron 20.0%
!! AATTCCTCTTAAAATTGATT+AGG - chr6_4:19704010-19704029 None:intergenic 20.0%
!!! TTTTAAGAGGAATTAAATCA+TGG + chr6_4:19704016-19704035 Msa0981010:three_prime_UTR 20.0%
! AAATGATAGATGATGTTGAT+TGG + chr6_4:19702134-19702153 Msa0981010:five_prime_UTR 25.0%
! AAAAGAATAGAAGCAAGTTT+GGG - chr6_4:19702300-19702319 None:intergenic 25.0%
! AAAAAGAATAGAAGCAAGTT+TGG - chr6_4:19702301-19702320 None:intergenic 25.0%
!! GGAAATACTTTAAGTTCATA+AGG + chr6_4:19702564-19702583 Msa0981010:intron 25.0%
! ATTTGTGTATGCATAGAATT+TGG + chr6_4:19703031-19703050 Msa0981010:intron 25.0%
!!! TTTTTTGTGGCAAATTTTTC+AGG + chr6_4:19703160-19703179 Msa0981010:intron 25.0%
! TGAATTTGAACATTAGAAGA+AGG - chr6_4:19703263-19703282 None:intergenic 25.0%
!!! TAAGATTGATTTTGTTGTTG+AGG - chr6_4:19703326-19703345 None:intergenic 25.0%
! AGAATGCAATCTATTAAGTA+GGG + chr6_4:19703896-19703915 Msa0981010:CDS 25.0%
! TAATTAGTGATTAGTGAAGT+TGG + chr6_4:19703921-19703940 Msa0981010:three_prime_UTR 25.0%
!! AGTTCCTAATCAATTTTAAG+AGG + chr6_4:19704003-19704022 Msa0981010:three_prime_UTR 25.0%
!! TAGAGTTACTGATATTTTTC+TGG + chr6_4:19704084-19704103 Msa0981010:three_prime_UTR 25.0%
! AAATGATAGATGATGTTGAT+TGG + chr6_4:19702134-19702153 Msa0981010:five_prime_UTR 25.0%
! AAAAGAATAGAAGCAAGTTT+GGG - chr6_4:19702300-19702319 None:intergenic 25.0%
! AAAAAGAATAGAAGCAAGTT+TGG - chr6_4:19702301-19702320 None:intergenic 25.0%
!! GGAAATACTTTAAGTTCATA+AGG + chr6_4:19702564-19702583 Msa0981010:intron 25.0%
! ATTTGTGTATGCATAGAATT+TGG + chr6_4:19703031-19703050 Msa0981010:intron 25.0%
!!! TTTTTTGTGGCAAATTTTTC+AGG + chr6_4:19703160-19703179 Msa0981010:intron 25.0%
! TGAATTTGAACATTAGAAGA+AGG - chr6_4:19703263-19703282 None:intergenic 25.0%
!!! TAAGATTGATTTTGTTGTTG+AGG - chr6_4:19703326-19703345 None:intergenic 25.0%
! AGAATGCAATCTATTAAGTA+GGG + chr6_4:19703896-19703915 Msa0981010:CDS 25.0%
! TAATTAGTGATTAGTGAAGT+TGG + chr6_4:19703921-19703940 Msa0981010:three_prime_UTR 25.0%
!! AGTTCCTAATCAATTTTAAG+AGG + chr6_4:19704003-19704022 Msa0981010:three_prime_UTR 25.0%
!! TAGAGTTACTGATATTTTTC+TGG + chr6_4:19704084-19704103 Msa0981010:three_prime_UTR 25.0%
! ATTCTCAGTGTTCTCTTTTA+TGG - chr6_4:19702262-19702281 None:intergenic 30.0%
AAAGAATAGAAGCAAGTTTG+GGG - chr6_4:19702299-19702318 None:intergenic 30.0%
AAATATCCATGTCTATAGGA+GGG - chr6_4:19702348-19702367 None:intergenic 30.0%
TTGCAAATATCCATGTCTAT+AGG - chr6_4:19702352-19702371 None:intergenic 30.0%
!!! TGTTGCTTTTTGGTTTTTTG+TGG + chr6_4:19703147-19703166 Msa0981010:intron 30.0%
!!! ATTTTTCAGGAAGTGGATTT+AGG + chr6_4:19703173-19703192 Msa0981010:intron 30.0%
!!! TTTTTCAGGAAGTGGATTTA+GGG + chr6_4:19703174-19703193 Msa0981010:intron 30.0%
!!! TTGCAAAATTTTGTTGTTCC+TGG + chr6_4:19703347-19703366 Msa0981010:CDS 30.0%
! ATGTGAATGTGACCAAATTT+TGG - chr6_4:19703414-19703433 None:intergenic 30.0%
CATTCACATCTTATAAGTGA+TGG + chr6_4:19703425-19703444 Msa0981010:CDS 30.0%
! CAATAAGCTTGTTTCAACAA+AGG - chr6_4:19703470-19703489 None:intergenic 30.0%
CTTTGTTGAAACAAGCTTAT+TGG + chr6_4:19703468-19703487 Msa0981010:CDS 30.0%
!! GAGACTTTTTGCTCATTTTT+CGG - chr6_4:19703518-19703537 None:intergenic 30.0%
! TGATGTTAATGATGATGATG+AGG + chr6_4:19703664-19703683 Msa0981010:CDS 30.0%
AACATATTCCAAATGCAAGA+AGG + chr6_4:19703687-19703706 Msa0981010:CDS 30.0%
GAGAATGCAATCTATTAAGT+AGG + chr6_4:19703895-19703914 Msa0981010:CDS 30.0%
TGAGCAATCATCAAAATATC+TGG - chr6_4:19704117-19704136 None:intergenic 30.0%
AATAGGTTAAGCTATTTGAG+AGG - chr6_4:19704145-19704164 None:intergenic 30.0%
TCTCAAATAGCTTAACCTAT+TGG + chr6_4:19704144-19704163 Msa0981010:three_prime_UTR 30.0%
!!! TCCAACTACATACCTTTTTT+CGG - chr6_4:19702100-19702119 None:intergenic 30.0%
! ATTCTCAGTGTTCTCTTTTA+TGG - chr6_4:19702262-19702281 None:intergenic 30.0%
AAAGAATAGAAGCAAGTTTG+GGG - chr6_4:19702299-19702318 None:intergenic 30.0%
AAATATCCATGTCTATAGGA+GGG - chr6_4:19702348-19702367 None:intergenic 30.0%
TTGCAAATATCCATGTCTAT+AGG - chr6_4:19702352-19702371 None:intergenic 30.0%
!!! TGTTGCTTTTTGGTTTTTTG+TGG + chr6_4:19703147-19703166 Msa0981010:intron 30.0%
!!! ATTTTTCAGGAAGTGGATTT+AGG + chr6_4:19703173-19703192 Msa0981010:intron 30.0%
!!! TTTTTCAGGAAGTGGATTTA+GGG + chr6_4:19703174-19703193 Msa0981010:intron 30.0%
!!! TTGCAAAATTTTGTTGTTCC+TGG + chr6_4:19703347-19703366 Msa0981010:CDS 30.0%
! ATGTGAATGTGACCAAATTT+TGG - chr6_4:19703414-19703433 None:intergenic 30.0%
CATTCACATCTTATAAGTGA+TGG + chr6_4:19703425-19703444 Msa0981010:CDS 30.0%
! CAATAAGCTTGTTTCAACAA+AGG - chr6_4:19703470-19703489 None:intergenic 30.0%
CTTTGTTGAAACAAGCTTAT+TGG + chr6_4:19703468-19703487 Msa0981010:CDS 30.0%
!! GAGACTTTTTGCTCATTTTT+CGG - chr6_4:19703518-19703537 None:intergenic 30.0%
! TGATGTTAATGATGATGATG+AGG + chr6_4:19703664-19703683 Msa0981010:CDS 30.0%
AACATATTCCAAATGCAAGA+AGG + chr6_4:19703687-19703706 Msa0981010:CDS 30.0%
GAGAATGCAATCTATTAAGT+AGG + chr6_4:19703895-19703914 Msa0981010:CDS 30.0%
TGAGCAATCATCAAAATATC+TGG - chr6_4:19704117-19704136 None:intergenic 30.0%
AATAGGTTAAGCTATTTGAG+AGG - chr6_4:19704145-19704164 None:intergenic 30.0%
TCTCAAATAGCTTAACCTAT+TGG + chr6_4:19704144-19704163 Msa0981010:three_prime_UTR 30.0%
CAAATATCCATGTCTATAGG+AGG - chr6_4:19702349-19702368 None:intergenic 35.0%
TGCAACAATGTATCAGTTTC+AGG + chr6_4:19702367-19702386 Msa0981010:CDS 35.0%
! GGTTTTTGCATTGTGTTTGA+AGG - chr6_4:19703305-19703324 None:intergenic 35.0%
CAGCTACTAGTACCAAAATT+TGG + chr6_4:19703399-19703418 Msa0981010:CDS 35.0%
! AAGCTTGTTTCAACAAAGGA+GGG - chr6_4:19703466-19703485 None:intergenic 35.0%
! TAAGCTTGTTTCAACAAAGG+AGG - chr6_4:19703467-19703486 None:intergenic 35.0%
ATCAGACAGAAGCAAAAAGA+AGG + chr6_4:19703555-19703574 Msa0981010:CDS 35.0%
TCAGACAGAAGCAAAAAGAA+GGG + chr6_4:19703556-19703575 Msa0981010:CDS 35.0%
! GAAAGAGAAAGAGAGTTTTG+AGG + chr6_4:19703601-19703620 Msa0981010:CDS 35.0%
TGCAAGTAGCTAACAAAAGT+AGG - chr6_4:19703845-19703864 None:intergenic 35.0%
CAAATATCCATGTCTATAGG+AGG - chr6_4:19702349-19702368 None:intergenic 35.0%
TGCAACAATGTATCAGTTTC+AGG + chr6_4:19702367-19702386 Msa0981010:CDS 35.0%
! GGTTTTTGCATTGTGTTTGA+AGG - chr6_4:19703305-19703324 None:intergenic 35.0%
CAGCTACTAGTACCAAAATT+TGG + chr6_4:19703399-19703418 Msa0981010:CDS 35.0%
! AAGCTTGTTTCAACAAAGGA+GGG - chr6_4:19703466-19703485 None:intergenic 35.0%
! TAAGCTTGTTTCAACAAAGG+AGG - chr6_4:19703467-19703486 None:intergenic 35.0%
ATCAGACAGAAGCAAAAAGA+AGG + chr6_4:19703555-19703574 Msa0981010:CDS 35.0%
TCAGACAGAAGCAAAAAGAA+GGG + chr6_4:19703556-19703575 Msa0981010:CDS 35.0%
! GAAAGAGAAAGAGAGTTTTG+AGG + chr6_4:19703601-19703620 Msa0981010:CDS 35.0%
TGCAAGTAGCTAACAAAAGT+AGG - chr6_4:19703845-19703864 None:intergenic 35.0%
AGCAGGAAAAAGGTCATCAA+TGG - chr6_4:19702416-19702435 None:intergenic 40.0%
!!! GTGGCAAATTTTTCAGGAAG+TGG + chr6_4:19703166-19703185 Msa0981010:intron 40.0%
!! CTCTTACTTCTTGCTTTTCC+AGG - chr6_4:19703368-19703387 None:intergenic 40.0%
AAAAAGAAGGGTGAAGAGAG+TGG + chr6_4:19703568-19703587 Msa0981010:CDS 40.0%
GGTGAAGAGAGTGGTAAAAA+TGG + chr6_4:19703577-19703596 Msa0981010:CDS 40.0%
!!! GAGAAAGAGAGTTTTGAGGT+TGG + chr6_4:19703605-19703624 Msa0981010:CDS 40.0%
GCACTCATTGTTTGTCACAA+AGG + chr6_4:19703711-19703730 Msa0981010:CDS 40.0%
CATGCATTGCATAGTGTCTT+TGG - chr6_4:19703767-19703786 None:intergenic 40.0%
AAGACACTATGCAATGCATG+TGG + chr6_4:19703767-19703786 Msa0981010:CDS 40.0%
AGCAGGAAAAAGGTCATCAA+TGG - chr6_4:19702416-19702435 None:intergenic 40.0%
!!! GTGGCAAATTTTTCAGGAAG+TGG + chr6_4:19703166-19703185 Msa0981010:intron 40.0%
!! CTCTTACTTCTTGCTTTTCC+AGG - chr6_4:19703368-19703387 None:intergenic 40.0%
AAAAAGAAGGGTGAAGAGAG+TGG + chr6_4:19703568-19703587 Msa0981010:CDS 40.0%
GGTGAAGAGAGTGGTAAAAA+TGG + chr6_4:19703577-19703596 Msa0981010:CDS 40.0%
!!! GAGAAAGAGAGTTTTGAGGT+TGG + chr6_4:19703605-19703624 Msa0981010:CDS 40.0%
GCACTCATTGTTTGTCACAA+AGG + chr6_4:19703711-19703730 Msa0981010:CDS 40.0%
CATGCATTGCATAGTGTCTT+TGG - chr6_4:19703767-19703786 None:intergenic 40.0%
AAGACACTATGCAATGCATG+TGG + chr6_4:19703767-19703786 Msa0981010:CDS 40.0%
ATGGTACTCAGAGCTTCTGT+CGG - chr6_4:19702243-19702262 None:intergenic 45.0%
GGGTGTGAAGAAGAAGAAGA+GGG - chr6_4:19702328-19702347 None:intergenic 45.0%
AGGGTGTGAAGAAGAAGAAG+AGG - chr6_4:19702329-19702348 None:intergenic 45.0%
TTCACACCCTCCTATAGACA+TGG + chr6_4:19702339-19702358 Msa0981010:exon 45.0%
! CCTTTTTCCTGCTCACAACA+CGG + chr6_4:19702423-19702442 Msa0981010:CDS 45.0%
! TCAGGAAGTGGATTTAGGGA+TGG + chr6_4:19703178-19703197 Msa0981010:intron 45.0%
! AAGTGGATTTAGGGATGGAG+TGG + chr6_4:19703183-19703202 Msa0981010:CDS 45.0%
!! GAAGGTGCTATGACACAACT+TGG - chr6_4:19703245-19703264 None:intergenic 45.0%
TGAGTGCACCTTCTTGCATT+TGG - chr6_4:19703698-19703717 None:intergenic 45.0%
CATAGTGTCTTTGGTCCCAA+TGG - chr6_4:19703758-19703777 None:intergenic 45.0%
TATGCAATGCATGTGGTGTG+AGG + chr6_4:19703774-19703793 Msa0981010:CDS 45.0%
GTAGGTTGTTGCCAGAGTAT+AGG + chr6_4:19703807-19703826 Msa0981010:CDS 45.0%
ACAAAAGTAGGACTCTTCGC+TGG - chr6_4:19703833-19703852 None:intergenic 45.0%
ATGGTACTCAGAGCTTCTGT+CGG - chr6_4:19702243-19702262 None:intergenic 45.0%
GGGTGTGAAGAAGAAGAAGA+GGG - chr6_4:19702328-19702347 None:intergenic 45.0%
AGGGTGTGAAGAAGAAGAAG+AGG - chr6_4:19702329-19702348 None:intergenic 45.0%
TTCACACCCTCCTATAGACA+TGG + chr6_4:19702339-19702358 Msa0981010:exon 45.0%
! CCTTTTTCCTGCTCACAACA+CGG + chr6_4:19702423-19702442 Msa0981010:CDS 45.0%
! TCAGGAAGTGGATTTAGGGA+TGG + chr6_4:19703178-19703197 Msa0981010:intron 45.0%
! AAGTGGATTTAGGGATGGAG+TGG + chr6_4:19703183-19703202 Msa0981010:CDS 45.0%
!! GAAGGTGCTATGACACAACT+TGG - chr6_4:19703245-19703264 None:intergenic 45.0%
TGAGTGCACCTTCTTGCATT+TGG - chr6_4:19703698-19703717 None:intergenic 45.0%
CATAGTGTCTTTGGTCCCAA+TGG - chr6_4:19703758-19703777 None:intergenic 45.0%
TATGCAATGCATGTGGTGTG+AGG + chr6_4:19703774-19703793 Msa0981010:CDS 45.0%
GTAGGTTGTTGCCAGAGTAT+AGG + chr6_4:19703807-19703826 Msa0981010:CDS 45.0%
ACAAAAGTAGGACTCTTCGC+TGG - chr6_4:19703833-19703852 None:intergenic 45.0%
CCGTGTTGTGAGCAGGAAAA+AGG - chr6_4:19702426-19702445 None:intergenic 50.0%
AGACTAACCGTGTTGTGAGC+AGG - chr6_4:19702433-19702452 None:intergenic 50.0%
AAAGTCTCTGCAGTTGCGTG+CGG + chr6_4:19703530-19703549 Msa0981010:CDS 50.0%
TGTCACAAAGGACCCCACAA+TGG + chr6_4:19703723-19703742 Msa0981010:CDS 50.0%
ACAAAGGACCCCACAATGGA+GGG + chr6_4:19703727-19703746 Msa0981010:CDS 50.0%
TGTGGTGTGAGGTACAAGTC+TGG + chr6_4:19703785-19703804 Msa0981010:CDS 50.0%
GTGTGAGGTACAAGTCTGGT+AGG + chr6_4:19703789-19703808 Msa0981010:CDS 50.0%
CCGTGTTGTGAGCAGGAAAA+AGG - chr6_4:19702426-19702445 None:intergenic 50.0%
AGACTAACCGTGTTGTGAGC+AGG - chr6_4:19702433-19702452 None:intergenic 50.0%
AAAGTCTCTGCAGTTGCGTG+CGG + chr6_4:19703530-19703549 Msa0981010:CDS 50.0%
TGTCACAAAGGACCCCACAA+TGG + chr6_4:19703723-19703742 Msa0981010:CDS 50.0%
ACAAAGGACCCCACAATGGA+GGG + chr6_4:19703727-19703746 Msa0981010:CDS 50.0%
TGTGGTGTGAGGTACAAGTC+TGG + chr6_4:19703785-19703804 Msa0981010:CDS 50.0%
GTGTGAGGTACAAGTCTGGT+AGG + chr6_4:19703789-19703808 Msa0981010:CDS 50.0%
CGGAGCAATGAGTTCGCTGT+CGG - chr6_4:19703498-19703517 None:intergenic 55.0%
CACAAAGGACCCCACAATGG+AGG + chr6_4:19703726-19703745 Msa0981010:CDS 55.0%
ATGGTCCTGCCCTCCATTGT+GGG - chr6_4:19703739-19703758 None:intergenic 55.0%
AATGGTCCTGCCCTCCATTG+TGG - chr6_4:19703740-19703759 None:intergenic 55.0%
ACAATGGAGGGCAGGACCAT+TGG + chr6_4:19703739-19703758 Msa0981010:CDS 55.0%
CAATGGAGGGCAGGACCATT+GGG + chr6_4:19703740-19703759 Msa0981010:CDS 55.0%
! CTCTTCGCTGGCCTATACTC+TGG - chr6_4:19703821-19703840 None:intergenic 55.0%
CGGAGCAATGAGTTCGCTGT+CGG - chr6_4:19703498-19703517 None:intergenic 55.0%
CACAAAGGACCCCACAATGG+AGG + chr6_4:19703726-19703745 Msa0981010:CDS 55.0%
ATGGTCCTGCCCTCCATTGT+GGG - chr6_4:19703739-19703758 None:intergenic 55.0%
AATGGTCCTGCCCTCCATTG+TGG - chr6_4:19703740-19703759 None:intergenic 55.0%
ACAATGGAGGGCAGGACCAT+TGG + chr6_4:19703739-19703758 Msa0981010:CDS 55.0%
CAATGGAGGGCAGGACCATT+GGG + chr6_4:19703740-19703759 Msa0981010:CDS 55.0%
! CTCTTCGCTGGCCTATACTC+TGG - chr6_4:19703821-19703840 None:intergenic 55.0%
TGGTCCTGCCCTCCATTGTG+GGG - chr6_4:19703738-19703757 None:intergenic 60.0%
TGGTCCTGCCCTCCATTGTG+GGG - chr6_4:19703738-19703757 None:intergenic 60.0%
AGGACCCCACAATGGAGGGC+AGG + chr6_4:19703731-19703750 Msa0981010:CDS 65.0%
AGGACCCCACAATGGAGGGC+AGG + chr6_4:19703731-19703750 Msa0981010:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 19702100 19704179 19702100 ID=Msa0981010;Name=Msa0981010
chr6_4 mRNA 19702100 19704179 19702100 ID=Msa0981010-mRNA-1;Parent=Msa0981010;Name=Msa0981010-mRNA-1;_AED=0.00;_eAED=0.00;_QI=258|1|1|1|1|1|2|263|273
chr6_4 exon 19702100 19702444 19702100 ID=Msa0981010-mRNA-1:exon:6141;Parent=Msa0981010-mRNA-1
chr6_4 exon 19703182 19704179 19703182 ID=Msa0981010-mRNA-1:exon:6142;Parent=Msa0981010-mRNA-1
chr6_4 five_prime_UTR 19702100 19702357 19702100 ID=Msa0981010-mRNA-1:five_prime_utr;Parent=Msa0981010-mRNA-1
chr6_4 CDS 19702358 19702444 19702358 ID=Msa0981010-mRNA-1:cds;Parent=Msa0981010-mRNA-1
chr6_4 CDS 19703182 19703916 19703182 ID=Msa0981010-mRNA-1:cds;Parent=Msa0981010-mRNA-1
chr6_4 three_prime_UTR 19703917 19704179 19703917 ID=Msa0981010-mRNA-1:three_prime_utr;Parent=Msa0981010-mRNA-1
Gene Sequence

>Msa0981010

ATGGATATTTGCAACAATGTATCAGTTTCAGGAGAGTTTCAACAAGAGTTTTCTACCATTGATGACCTTTTTCCTGCTCACAACACGGAAGTGGATTTAGGGATGGAGTGGTTGTCAGTGTTTGTTGAAGAATGTTTTTCAAGTAAACCAAGTTGTGTCATAGCACCTTCTTCTAATGTTCAAATTCAAGAAAGTACAAACACAAAACCTTCAAACACAATGCAAAAACCTCAACAACAAAATCAATCTTATTTGCAAAATTTTGTTGTTCCTGGAAAAGCAAGAAGTAAGAGAAAAAGACTTTCAGCTACTAGTACCAAAATTTGGTCACATTCACATCTTATAAGTGATGGTAATTTGATTTCTGACCCTCCTTTGTTGAAACAAGCTTATTGGTTAGCCGACAGCGAACTCATTGCTCCGAAAAATGAGCAAAAAGTCTCTGCAGTTGCGTGCGGAGATCAGACAGAAGCAAAAAGAAGGGTGAAGAGAGTGGTAAAAATGGAGAAAGAGAAAGAGAGTTTTGAGGTTGGAATTACTCAAGTTAAGCATAGTGAGAATAATAATGATGATGTTAATGATGATGATGAGGAACATATTCCAAATGCAAGAAGGTGCACTCATTGTTTGTCACAAAGGACCCCACAATGGAGGGCAGGACCATTGGGACCAAAGACACTATGCAATGCATGTGGTGTGAGGTACAAGTCTGGTAGGTTGTTGCCAGAGTATAGGCCAGCGAAGAGTCCTACTTTTGTTAGCTACTTGCATTCAAATTCACACAAGAAAGTTCTTGAGATGAGAATGCAATCTATTAAGTAG

Protein sequence

>Msa0981010

MDICNNVSVSGEFQQEFSTIDDLFPAHNTEVDLGMEWLSVFVEECFSSKPSCVIAPSSNVQIQESTNTKPSNTMQKPQQQNQSYLQNFVVPGKARSKRKRLSATSTKIWSHSHLISDGNLISDPPLLKQAYWLADSELIAPKNEQKVSAVACGDQTEAKRRVKRVVKMEKEKESFEVGITQVKHSENNNDDVNDDDEEHIPNARRCTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMRMQSIK*