AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0317780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0317780 MtrunA17_Chr4g0067411 23.364 214 146 6 13 219 288 490 7.91e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0317780 AT4G15880.1 27.442 215 131 8 15 219 290 489 1.99e-14 72.8

Find 222 sgRNAs with CRISPR-Local

Find 471 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTATATTAACTCGGTAAA+TGG 0.151452 2_4:+15750175 Msa0317780:five_prime_UTR
ACGCTCTTAGTACCTATAAT+TGG 0.159588 2_4:+15749809 Msa0317780:five_prime_UTR
TTGGATTATGTTGATTAATT+TGG 0.171188 2_4:+15748689 Msa0317780:five_prime_UTR
GATACAGTTATACACATTTC+TGG 0.200591 2_4:+15749904 Msa0317780:five_prime_UTR
CTCTTAAGAAGCATAGTTTA+TGG 0.211933 2_4:+15748395 Msa0317780:five_prime_UTR
CTAGACCTTTGTTTGGCTTT+AGG 0.220943 2_4:+15749541 Msa0317780:five_prime_UTR
CAACAGTATTCATTCATTAA+TGG 0.229144 2_4:-15749284 None:intergenic
TGATTGATACGTCTTATAAT+TGG 0.259286 2_4:+15748315 Msa0317780:five_prime_UTR
TGCTTTGGGGTTGCTTTAAC+AGG 0.259473 2_4:+15748512 Msa0317780:five_prime_UTR
GTTACGTATATGTTAAAATA+TGG 0.261544 2_4:+15748909 Msa0317780:five_prime_UTR
AGACAATCCAACTCCTGTTT+AGG 0.265563 2_4:+15748211 Msa0317780:five_prime_UTR
ATGCGTGGAAAACGCTTAAT+TGG 0.267383 2_4:-15750073 None:intergenic
TGAGGTAGTTGATGATTTAA+AGG 0.268632 2_4:+15751330 Msa0317780:CDS
AGATATGTTGGAATCTTCTT+TGG 0.268674 2_4:+15752299 Msa0317780:CDS
TGAAGTTATTCAGGTGCTTT+GGG 0.274410 2_4:+15748498 Msa0317780:five_prime_UTR
ATTACTTTGGGTAGGATTAT+TGG 0.285548 2_4:+15748590 Msa0317780:five_prime_UTR
ACAAAGGTCTAGATGTTTAA+AGG 0.286497 2_4:-15749530 None:intergenic
TATATAGATAAAGGGGTATT+AGG 0.287945 2_4:-15754272 None:intergenic
AGAAATACATATATAGATAA+AGG 0.290515 2_4:-15754281 None:intergenic
TTAATATAACTGTGTGATTT+CGG 0.290724 2_4:-15749754 None:intergenic
GAGGATATTAAAAGCAAATA+AGG 0.296971 2_4:+15750455 Msa0317780:five_prime_UTR
TGTGGGATGGTGAAGCAAAA+TGG 0.309075 2_4:+15752489 Msa0317780:CDS
CGCTCTTAGTACCTATAATT+GGG 0.312086 2_4:+15749810 Msa0317780:five_prime_UTR
ATTTACCAAAGCAACAAAAT+TGG 0.312599 2_4:+15752337 Msa0317780:CDS
TTATCGAAGGTCATATATAA+AGG 0.331004 2_4:+15754340 Msa0317780:three_prime_UTR
GTATTGTGGTGAAGTTATTC+AGG 0.332978 2_4:+15748489 Msa0317780:five_prime_UTR
ACCAACTAATCACATTAAAT+AGG 0.335921 2_4:-15750240 None:intergenic
GCTTTAGGTTTGCCTATTGT+AGG 0.336005 2_4:+15749556 Msa0317780:five_prime_UTR
GCTTAATTGGACCACTGGTT+AGG 0.336914 2_4:-15750060 None:intergenic
CATTGGAGTTTACGTCCTTC+AGG 0.346042 2_4:-15751358 None:intergenic
GACAATCCAACTCCTGTTTA+GGG 0.347430 2_4:+15748212 Msa0317780:five_prime_UTR
CCTTAGGTTATTAATATTGC+TGG 0.350091 2_4:+15751143 Msa0317780:intron
AACACAAAGATTTGCTTTCC+CGG 0.362338 2_4:+15750409 Msa0317780:five_prime_UTR
GTGAAGTTATTCAGGTGCTT+TGG 0.366697 2_4:+15748497 Msa0317780:five_prime_UTR
AACAGCAACACCCCAATTAT+AGG 0.367016 2_4:-15749821 None:intergenic
CTTCCTACTTCCATGCTACT+TGG 0.368193 2_4:-15750504 None:intergenic
TCTATATATGTATTTCTTTG+AGG 0.369379 2_4:+15754287 Msa0317780:three_prime_UTR
ATGTCCAGTGGTCTTCGAAC+TGG 0.369613 2_4:-15752037 None:intergenic
AACCATTCTCAAGTTGGTAT+TGG 0.370824 2_4:+15750321 Msa0317780:five_prime_UTR
ATAAAGGGGTATTAGGATAA+AGG 0.373190 2_4:-15754265 None:intergenic
AATAAAGGAGCGAACAATAA+AGG 0.374187 2_4:+15752276 Msa0317780:CDS
GAAATACATATATAGATAAA+GGG 0.379203 2_4:-15754280 None:intergenic
CTCTACGTGATATCATTTAG+AGG 0.380165 2_4:-15748798 None:intergenic
GTAGATGAGTTGCGTGTTGC+CGG 0.380253 2_4:+15750987 Msa0317780:CDS
TGGTTGCCCAGCCGTATTGC+AGG 0.381669 2_4:+15749924 Msa0317780:five_prime_UTR
GTTTACCGGAAACTAGTGAT+AGG 0.386283 2_4:+15749584 Msa0317780:five_prime_UTR
CTACGTTGTCCCCTTCTTGA+AGG 0.389579 2_4:-15749681 None:intergenic
GGCACACTCATTTGATTTGT+CGG 0.390763 2_4:+15747946 None:intergenic
TGCAGTATCTAATACAAATC+TGG 0.391438 2_4:-15754119 None:intergenic
AATCAAAGTGTGAGATTAAG+TGG 0.394106 2_4:+15748268 Msa0317780:five_prime_UTR
ACCTATTTAATGTGATTAGT+TGG 0.395573 2_4:+15750239 Msa0317780:five_prime_UTR
TCACTATTTATAATTTAAAT+CGG 0.400219 2_4:+15748091 Msa0317780:five_prime_UTR
AACTAATGTGTGCATTACTT+TGG 0.400622 2_4:+15748577 Msa0317780:five_prime_UTR
TGATTAGTTGGTTGAGGACT+TGG 0.400972 2_4:+15750251 Msa0317780:five_prime_UTR
GTGGGATGGTGAAGCAAAAT+GGG 0.404332 2_4:+15752490 Msa0317780:CDS
GTGGATATGAAGACCTATAT+AGG 0.406234 2_4:+15749424 Msa0317780:five_prime_UTR
GTAGTGGAATTGATGAATAA+AGG 0.409455 2_4:+15752261 Msa0317780:CDS
TTTGTCTAACTTGATTGTGC+TGG 0.411331 2_4:+15754179 Msa0317780:three_prime_UTR
ACTTACTTAACTCCCTAAAC+AGG 0.412047 2_4:-15748224 None:intergenic
CTAACCCTATCACTAGTTTC+CGG 0.415358 2_4:-15749589 None:intergenic
CAGTGAAATTGTTTGTCGTC+TGG 0.416799 2_4:+15754072 Msa0317780:CDS
AGTACCATTCATTCCTATAT+AGG 0.420459 2_4:-15749437 None:intergenic
TAAACATCTAGACCTTTGTT+TGG 0.421249 2_4:+15749534 Msa0317780:five_prime_UTR
TGTCGGATGAGTTGTTCAAA+TGG 0.427031 2_4:+15747963 Msa0317780:five_prime_UTR
ACTTCCTCGCCTTCATGCAT+TGG 0.432506 2_4:-15751019 None:intergenic
GGAGTTGGATGATGATGATA+TGG 0.432653 2_4:+15750755 Msa0317780:five_prime_UTR
TGATGATGATATGGCTGAAA+AGG 0.433309 2_4:+15750764 Msa0317780:five_prime_UTR
TTTATTCTGCACACATGAAA+AGG 0.433361 2_4:+15750834 Msa0317780:exon
CTTAATTGGACCACTGGTTA+GGG 0.433873 2_4:-15750059 None:intergenic
AGTATATTAACTCGGTAAAT+GGG 0.436587 2_4:+15750176 Msa0317780:five_prime_UTR
GCGGGAAAAGCAGAAGAAAA+TGG 0.436729 2_4:+15750594 Msa0317780:five_prime_UTR
AATGAATGGTACTTTATTGA+AGG 0.438781 2_4:+15749447 Msa0317780:five_prime_UTR
TTAAAGCTTTAGAAATTTGA+AGG 0.441106 2_4:+15748874 Msa0317780:five_prime_UTR
GGTATATGTTCTTAAGTACT+TGG 0.444660 2_4:+15752463 Msa0317780:CDS
TATGTTGGAATCTTCTTTGG+AGG 0.445095 2_4:+15752302 Msa0317780:CDS
TTCAATACCTGCAATACGGC+TGG 0.445664 2_4:-15749931 None:intergenic
TCTTCATATCCACAAGATAT+CGG 0.446334 2_4:-15749414 None:intergenic
AGCAAATAAGGTTGACGGTA+GGG 0.449525 2_4:+15750467 Msa0317780:five_prime_UTR
TTGGAAGAAGAAAATGATGA+TGG 0.450909 2_4:+15750663 Msa0317780:five_prime_UTR
TTCTTTGGAGGTTGTAGTGG+TGG 0.452564 2_4:+15752314 Msa0317780:CDS
TTGTAACGTGTGTTGAGAAT+AGG 0.453191 2_4:+15749097 Msa0317780:five_prime_UTR
TTTGCGCATCAGACAATGTT+CGG 0.454164 2_4:-15749366 None:intergenic
GGTAAACACTCTCCTACAAT+AGG 0.455224 2_4:-15749568 None:intergenic
TGAATTTCCGCTCAGTCCAT+TGG 0.455335 2_4:-15751375 None:intergenic
TTAACTCCCTAAACAGGAGT+TGG 0.455504 2_4:-15748218 None:intergenic
TTCTTAAGTACTTGGAGTTG+TGG 0.459941 2_4:+15752471 Msa0317780:CDS
AAGATTGATGCGGATAATGA+TGG 0.460099 2_4:+15750558 Msa0317780:five_prime_UTR
TAGATGAGTTGCGTGTTGCC+GGG 0.464352 2_4:+15750988 Msa0317780:CDS
TTAATGTGATTAGTTGGTTG+AGG 0.466558 2_4:+15750245 Msa0317780:five_prime_UTR
TATCTACCAACTTATTAGTA+CGG 0.467587 2_4:-15749339 None:intergenic
ATCTACCAACTTATTAGTAC+GGG 0.467987 2_4:-15749338 None:intergenic
GTCGGATGAGTTGTTCAAAT+GGG 0.468410 2_4:+15747964 Msa0317780:five_prime_UTR
AGGTGGGATGCAAGTAGCTT+GGG 0.470670 2_4:+15749481 Msa0317780:five_prime_UTR
TGGGATTTAGAGTAGGCGTT+AGG 0.472541 2_4:+15749500 Msa0317780:five_prime_UTR
GGAAAGCAAATCTTTGTGTT+CGG 0.477390 2_4:-15750406 None:intergenic
TCTTAAGTACTTGGAGTTGT+GGG 0.482984 2_4:+15752472 Msa0317780:CDS
TAATATTCGTTGGTGTATCA+TGG 0.485490 2_4:+15754232 Msa0317780:three_prime_UTR
AACATATGTCGAAAGATTTG+TGG 0.488241 2_4:+15748829 Msa0317780:five_prime_UTR
CATGTTACGTGTTGGACCAT+AGG 0.488808 2_4:+15752057 Msa0317780:CDS
AATATTCAATACCTGCAATA+CGG 0.491166 2_4:-15749935 None:intergenic
ACTAATGTGTGCATTACTTT+GGG 0.491948 2_4:+15748578 Msa0317780:five_prime_UTR
TATTGTAGGAGAGTGTTTAC+CGG 0.495009 2_4:+15749570 Msa0317780:five_prime_UTR
TTACCGAGTTAATATACTAA+AGG 0.495602 2_4:-15750171 None:intergenic
ACTTCCATGCTACTTGGAAT+CGG 0.499692 2_4:-15750498 None:intergenic
TGAAGGAATTATTGCATAGG+TGG 0.500937 2_4:+15749464 Msa0317780:five_prime_UTR
ACCAACTTGAGAATGGTTAA+CGG 0.500987 2_4:-15750316 None:intergenic
AACATGACCTCCATCCACTT+TGG 0.501951 2_4:-15750107 None:intergenic
AAGCTGAAGGTCCTTCAAGA+AGG 0.502318 2_4:+15749670 Msa0317780:five_prime_UTR
ATCCTCAAGGATTGAAACCC+GGG 0.502408 2_4:-15750427 None:intergenic
TAAAGACAATGGGATGGAGT+TGG 0.505100 2_4:+15750740 Msa0317780:five_prime_UTR
CTCCAATACCAACTTGAGAA+TGG 0.505693 2_4:-15750323 None:intergenic
CATACATTGTCCTCTTCCTA+TGG 0.507544 2_4:-15752073 None:intergenic
AGCATTACCAATGAATAGTC+GGG 0.509033 2_4:-15752527 None:intergenic
ATGGAAGAAGATAAAGACAA+TGG 0.509362 2_4:+15750729 Msa0317780:five_prime_UTR
TAGGTGGGATGCAAGTAGCT+TGG 0.510938 2_4:+15749480 Msa0317780:five_prime_UTR
AAGCATTACCAATGAATAGT+CGG 0.511109 2_4:-15752528 None:intergenic
GGGCAGAAATAATGTGAGAC+TGG 0.513035 2_4:+15748166 Msa0317780:five_prime_UTR
AGAAAATGGTGGGATGAAGT+TGG 0.514499 2_4:+15750608 Msa0317780:five_prime_UTR
AAGACCTATATAGGAATGAA+TGG 0.515117 2_4:+15749433 Msa0317780:five_prime_UTR
ATCTTCTTTGGAGGTTGTAG+TGG 0.519883 2_4:+15752311 Msa0317780:CDS
TGGAAGAAGATAAAGACAAT+GGG 0.520727 2_4:+15750730 Msa0317780:five_prime_UTR
GCCGTTAACCATTCTCAAGT+TGG 0.520859 2_4:+15750315 Msa0317780:five_prime_UTR
GAAGAGGACAATGTATGTGC+TGG 0.521423 2_4:+15752079 Msa0317780:CDS
AGGTTATTAATATTGCTGGC+AGG 0.523648 2_4:+15751147 Msa0317780:intron
ACTTACAGGAGGATATCCTT+CGG 0.524242 2_4:+15754044 Msa0317780:intron
TTAAAAGCAAATAAGGTTGA+CGG 0.525394 2_4:+15750462 Msa0317780:five_prime_UTR
AACTCCGTTCCGATATCTTG+TGG 0.528157 2_4:+15749405 Msa0317780:five_prime_UTR
AATGCCCCGTACTAATAAGT+TGG 0.529713 2_4:+15749333 Msa0317780:five_prime_UTR
GATGGGTTGAAAAGTGAGGC+GGG 0.530008 2_4:+15750576 Msa0317780:five_prime_UTR
CCGCAACGCCTCAAGTGTCT+TGG 0.532629 2_4:-15751419 None:intergenic
AATGCATGAAGGCGAGGAAG+TGG 0.532769 2_4:+15751021 Msa0317780:CDS
ATACCCGCGGATTTATTGAT+CGG 0.534688 2_4:+15754145 Msa0317780:CDS
AAAACGCTTAATTGGACCAC+TGG 0.534869 2_4:-15750065 None:intergenic
GAGTATGCCCGACTATTCAT+TGG 0.535075 2_4:+15752520 Msa0317780:CDS
AGCTGAAGGTCCTTCAAGAA+GGG 0.538805 2_4:+15749671 Msa0317780:five_prime_UTR
ACACAAAGATTTGCTTTCCC+GGG 0.543023 2_4:+15750410 Msa0317780:five_prime_UTR
TTGTTAAGCAATAGTAGTGA+TGG 0.544942 2_4:+15748613 Msa0317780:five_prime_UTR
GAACAATAAAGGAGATATGT+TGG 0.549679 2_4:+15752287 Msa0317780:CDS
CAATCCTTGAGGATGATATG+AGG 0.550170 2_4:+15750436 Msa0317780:five_prime_UTR
CTTATATGGCTGAACATCAA+AGG 0.550916 2_4:+15750376 Msa0317780:five_prime_UTR
TGTCCAGTGGTCTTCGAACT+GGG 0.551007 2_4:-15752036 None:intergenic
GGCATTTGAGTCTTTATCTG+TGG 0.552622 2_4:-15749316 None:intergenic
AGTAGCATGGAAGTAGGAAG+TGG 0.553313 2_4:+15750507 Msa0317780:five_prime_UTR
TTTACCGGAAACTAGTGATA+GGG 0.559975 2_4:+15749585 Msa0317780:five_prime_UTR
GAAGGAATTATTGCATAGGT+GGG 0.560436 2_4:+15749465 Msa0317780:five_prime_UTR
TTCCCGGGTTTCAATCCTTG+AGG 0.561883 2_4:+15750425 Msa0317780:five_prime_UTR
CATCCTCAAGGATTGAAACC+CGG 0.563868 2_4:-15750428 None:intergenic
TCAAGATGTATATGCCTCGT+TGG 0.564996 2_4:+15751395 Msa0317780:CDS
AAGCAAATAAGGTTGACGGT+AGG 0.567979 2_4:+15750466 Msa0317780:five_prime_UTR
AGAAAATGATGATGGGATGA+AGG 0.570797 2_4:+15750671 Msa0317780:five_prime_UTR
ATTCCACTACCCCTTCAAAA+CGG 0.572945 2_4:-15752248 None:intergenic
CAACCCAGTTCGAAGACCAC+TGG 0.574509 2_4:+15752033 Msa0317780:CDS
CATGATGAAGTTCGAAAACA+TGG 0.575114 2_4:+15751179 Msa0317780:CDS
AAATACATATATAGATAAAG+GGG 0.575274 2_4:-15754279 None:intergenic
ATATCCTCATATCATCCTCA+AGG 0.575345 2_4:-15750440 None:intergenic
TATGGCTGAACATCAAAGGT+TGG 0.580692 2_4:+15750380 Msa0317780:five_prime_UTR
AGTGTTAGTGGATGATGTGA+TGG 0.581899 2_4:+15748733 Msa0317780:five_prime_UTR
AGATGAGTTGCGTGTTGCCG+GGG 0.584197 2_4:+15750989 Msa0317780:CDS
AGTAGCTTGGGATTTAGAGT+AGG 0.584499 2_4:+15749493 Msa0317780:five_prime_UTR
TTGGTCCAATTGTTAATGCG+TGG 0.585880 2_4:-15750088 None:intergenic
ATGAGAAATCAAACACTAGA+GGG 0.586103 2_4:+15748121 Msa0317780:five_prime_UTR
AGAAGATAAAGACAATGGGA+TGG 0.587623 2_4:+15750734 Msa0317780:five_prime_UTR
TATTGAAGGAATTATTGCAT+AGG 0.587809 2_4:+15749461 Msa0317780:five_prime_UTR
CTGAAGGACGTAAACTCCAA+TGG 0.587862 2_4:+15751359 Msa0317780:CDS
ATTATGTTGATTAATTTGGT+AGG 0.588132 2_4:+15748693 Msa0317780:five_prime_UTR
AATTGAAAATCTTAGTAGTG+CGG 0.588744 2_4:+15749855 Msa0317780:five_prime_UTR
GAAGGTTGATGATGAAGATG+TGG 0.591676 2_4:+15750689 Msa0317780:five_prime_UTR
TAGTGTACATTCTAAGCTGA+AGG 0.592478 2_4:+15749657 Msa0317780:five_prime_UTR
AACAATTGGACCAAAGTGGA+TGG 0.592872 2_4:+15750097 Msa0317780:five_prime_UTR
CAGTGGTCTTCGAACTGGGT+TGG 0.595890 2_4:-15752032 None:intergenic
ATGCATGAAGGCGAGGAAGT+GGG 0.596800 2_4:+15751022 Msa0317780:CDS
TAACCGATCAATAAATCCGC+GGG 0.596912 2_4:-15754148 None:intergenic
GATTTAAAGGCACATCCTGA+AGG 0.597377 2_4:+15751343 Msa0317780:CDS
CATTAACAATTGGACCAAAG+TGG 0.599981 2_4:+15750093 Msa0317780:five_prime_UTR
TCAATACCTGCAATACGGCT+GGG 0.600754 2_4:-15749930 None:intergenic
TGATGAAGATGTTGGTGAAG+AGG 0.600999 2_4:+15750632 Msa0317780:five_prime_UTR
CCACTGGACATGTTACGTGT+TGG 0.601741 2_4:+15752049 Msa0317780:CDS
ACGTGTTGGACCATAGGAAG+AGG 0.602868 2_4:+15752063 Msa0317780:CDS
TAGAGTAGGCGTTAGGACTG+TGG 0.605350 2_4:+15749507 Msa0317780:five_prime_UTR
ATGTGTGCATTACTTTGGGT+AGG 0.605587 2_4:+15748582 Msa0317780:five_prime_UTR
AAGTCCACTGCTACATTCTG+AGG 0.606211 2_4:-15748448 None:intergenic
GATGAGAAATCAAACACTAG+AGG 0.606463 2_4:+15748120 Msa0317780:five_prime_UTR
TATTCCGATTCCAAGTAGCA+TGG 0.607008 2_4:+15750494 Msa0317780:five_prime_UTR
ATTCCAAGTAGCATGGAAGT+AGG 0.610198 2_4:+15750501 Msa0317780:five_prime_UTR
GGAAGTGGGTCAAAACATGT+AGG 0.610645 2_4:+15750522 Msa0317780:five_prime_UTR
TGGAAGAAGAAAATGATGAT+GGG 0.616216 2_4:+15750664 Msa0317780:five_prime_UTR
CCAAGACACTTGAGGCGTTG+CGG 0.618422 2_4:+15751419 Msa0317780:CDS
GGTTCCAACACAACAAGACA+TGG 0.619501 2_4:+15750272 Msa0317780:five_prime_UTR
TGGGATGGTGAAGCAAAATG+GGG 0.623459 2_4:+15752491 Msa0317780:CDS
TGATGGGTTGAAAAGTGAGG+CGG 0.624829 2_4:+15750575 Msa0317780:five_prime_UTR
TTGCCTTTAGTATATTAACT+CGG 0.628627 2_4:+15750168 Msa0317780:five_prime_UTR
GTCATTTGATTAGATATGGG+CGG 0.632926 2_4:+15750024 Msa0317780:intron
CAATTTCACTGCGAATCCGA+AGG 0.633824 2_4:-15754060 None:intergenic
GAAAAGCAGAAGAAAATGGT+GGG 0.634063 2_4:+15750598 Msa0317780:five_prime_UTR
GCTGAAGGTCCTTCAAGAAG+GGG 0.635073 2_4:+15749672 Msa0317780:five_prime_UTR
AAGTACTTGGAGTTGTGGGA+TGG 0.635913 2_4:+15752476 Msa0317780:CDS
AAGGTTGATGATGAAGATGT+GGG 0.641554 2_4:+15750690 Msa0317780:five_prime_UTR
AAGTTGGATGATGAAGATGT+TGG 0.645218 2_4:+15750624 Msa0317780:five_prime_UTR
GGAAAAGCAGAAGAAAATGG+TGG 0.646378 2_4:+15750597 Msa0317780:five_prime_UTR
ATTATCCAAACGCTGCCTTG+AGG 0.647660 2_4:-15752126 None:intergenic
CGGAAAATATAACACACACA+AGG 0.655010 2_4:-15749734 None:intergenic
ACAGTGAAAGAAATGCCTCA+AGG 0.655287 2_4:+15752111 Msa0317780:CDS
CTGACCTCAGAATGTAGCAG+TGG 0.661445 2_4:+15748444 Msa0317780:five_prime_UTR
AGATTGATGCGGATAATGAT+GGG 0.662184 2_4:+15750559 Msa0317780:five_prime_UTR
TAATGATGGGTTGAAAAGTG+AGG 0.663934 2_4:+15750572 Msa0317780:five_prime_UTR
AATTGGACCAAAGTGGATGG+AGG 0.668982 2_4:+15750100 Msa0317780:five_prime_UTR
GCAAACCTAAAGCCAAACAA+AGG 0.673782 2_4:-15749546 None:intergenic
GTAGCATGGAAGTAGGAAGT+GGG 0.674257 2_4:+15750508 Msa0317780:five_prime_UTR
TCGTTGGACCAAGACACTTG+AGG 0.677045 2_4:+15751411 Msa0317780:CDS
GAAGTTATTCAGGTGCTTTG+GGG 0.678278 2_4:+15748499 Msa0317780:five_prime_UTR
GAACATTTATCCCTAACCAG+TGG 0.678694 2_4:+15750049 Msa0317780:five_prime_UTR
GCTCTTAGTACCTATAATTG+GGG 0.679670 2_4:+15749811 Msa0317780:five_prime_UTR
TTAACCGATCAATAAATCCG+CGG 0.698985 2_4:-15754149 None:intergenic
ATATCCACAAGATATCGGAA+CGG 0.702922 2_4:-15749409 None:intergenic
CCAACACGTAACATGTCCAG+TGG 0.705795 2_4:-15752049 None:intergenic
GTAAACTCCAATGGACTGAG+CGG 0.711805 2_4:+15751368 Msa0317780:CDS
TCAAGTGTCTTGGTCCAACG+AGG 0.711931 2_4:-15751409 None:intergenic
AGATACTGCAAAGATACCCG+CGG 0.714457 2_4:+15754132 Msa0317780:CDS
GGGATGGTGAAGCAAAATGG+GGG 0.720669 2_4:+15752492 Msa0317780:CDS
AAAGTGTAGTAAGATTGATG+CGG 0.726301 2_4:+15750548 Msa0317780:five_prime_UTR
TATGTTAGTAGTGCATAACA+CGG 0.740933 2_4:+15748639 Msa0317780:five_prime_UTR
TCTACCAACTTATTAGTACG+GGG 0.745691 2_4:-15749337 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCACTATTTATAATTTAAAT+CGG + chr2_4:15748091-15748110 Msa0317780:five_prime_UTR 10.0%
!! AATCTAAATTAAAACAAAAA+AGG - chr2_4:15751077-15751096 None:intergenic 10.0%
!! TATTTAATCGTAAAATAAAT+TGG - chr2_4:15752787-15752806 None:intergenic 10.0%
!!! TTTTCATTTAAAAAAAATTG+AGG - chr2_4:15753284-15753303 None:intergenic 10.0%
!!! TTTTATTTTTTTAAAGTGTT+TGG + chr2_4:15753767-15753786 Msa0317780:intron 10.0%
!! TACTAAATACTAATATATTA+TGG + chr2_4:15753983-15754002 Msa0317780:intron 10.0%
!! ACTAAATACTAATATATTAT+GGG + chr2_4:15753984-15754003 Msa0317780:intron 10.0%
!! AGATAAAAAAAAAACTCAAA+AGG + chr2_4:15748145-15748164 Msa0317780:five_prime_UTR 15.0%
!! GATAAAAAAAAAACTCAAAA+GGG + chr2_4:15748146-15748165 Msa0317780:five_prime_UTR 15.0%
!! AAGTAAGTTAATTAAAAAGA+TGG + chr2_4:15748239-15748258 Msa0317780:five_prime_UTR 15.0%
!! ATTAAAACAAAAAAGGTTAA+CGG - chr2_4:15751070-15751089 None:intergenic 15.0%
!! ACATAAATAAAAGTAAGTAA+TGG - chr2_4:15751119-15751138 None:intergenic 15.0%
!!! AATTTTGTCAGATTATTTTT+CGG + chr2_4:15751217-15751236 Msa0317780:CDS 15.0%
!!! AACTCTTAAATAAATTGTTT+TGG + chr2_4:15752163-15752182 Msa0317780:intron 15.0%
!! CTAAATACTAATATATTATG+GGG + chr2_4:15753985-15754004 Msa0317780:intron 15.0%
!! AAATACATATATAGATAAAG+GGG - chr2_4:15754282-15754301 None:intergenic 15.0%
!! GAAATACATATATAGATAAA+GGG - chr2_4:15754283-15754302 None:intergenic 15.0%
!! AGAAATACATATATAGATAA+AGG - chr2_4:15754284-15754303 None:intergenic 15.0%
!! TAAGTTAATTAAAAAGATGG+TGG + chr2_4:15748242-15748261 Msa0317780:five_prime_UTR 20.0%
!!! ATCATTTAATTTTGTCAATG+TGG + chr2_4:15748340-15748359 Msa0317780:five_prime_UTR 20.0%
!!! TTGGATTATGTTGATTAATT+TGG + chr2_4:15748689-15748708 Msa0317780:five_prime_UTR 20.0%
!!! ATTATGTTGATTAATTTGGT+AGG + chr2_4:15748693-15748712 Msa0317780:five_prime_UTR 20.0%
!!! TTAAAGCTTTAGAAATTTGA+AGG + chr2_4:15748874-15748893 Msa0317780:five_prime_UTR 20.0%
!! AATTTGAAGGAAAAAAAATG+TGG + chr2_4:15748887-15748906 Msa0317780:five_prime_UTR 20.0%
!! GTTACGTATATGTTAAAATA+TGG + chr2_4:15748909-15748928 Msa0317780:five_prime_UTR 20.0%
!!! ATAATGTTCTTCAATTTTTG+TGG + chr2_4:15749011-15749030 Msa0317780:five_prime_UTR 20.0%
!! TTAATATAACTGTGTGATTT+CGG - chr2_4:15749757-15749776 None:intergenic 20.0%
!!! ATTTGTCATTTGATTAGATA+TGG + chr2_4:15750020-15750039 Msa0317780:intron 20.0%
!!! TTTGTCATTTGATTAGATAT+GGG + chr2_4:15750021-15750040 Msa0317780:intron 20.0%
!!! TTTTATTTATGTATTGCCTT+AGG + chr2_4:15751127-15751146 Msa0317780:intron 20.0%
!! TTATAATTAATGTTAGGCAT+GGG - chr2_4:15751302-15751321 None:intergenic 20.0%
!! ATTATAATTAATGTTAGGCA+TGG - chr2_4:15751303-15751322 None:intergenic 20.0%
!! CTGCAATTATAATTAATGTT+AGG - chr2_4:15751308-15751327 None:intergenic 20.0%
!! TTAATTATAATTGCAGTTTG+AGG + chr2_4:15751312-15751331 Msa0317780:intron 20.0%
!! TCATTGACATCAAATTTATT+AGG - chr2_4:15751931-15751950 None:intergenic 20.0%
!! TTGATATATTACTTGTGTAT+AGG + chr2_4:15752391-15752410 Msa0317780:intron 20.0%
!! TGATATATTACTTGTGTATA+GGG + chr2_4:15752392-15752411 Msa0317780:intron 20.0%
!! AATAACTCACTAGAATATAT+GGG + chr2_4:15752927-15752946 Msa0317780:intron 20.0%
!! TTGTTTGAGGAAAATAAAAA+TGG + chr2_4:15752955-15752974 Msa0317780:intron 20.0%
!! TATTTGACAGGAATAAAAAT+GGG - chr2_4:15753113-15753132 None:intergenic 20.0%
!! TTCAACAATCAATTTCATAT+AGG - chr2_4:15753209-15753228 None:intergenic 20.0%
!!! CAAGAATTATTTTCTTTTGT+CGG + chr2_4:15753324-15753343 Msa0317780:intron 20.0%
!!! TAATTCCTAGGAATTTTTTA+TGG - chr2_4:15753600-15753619 None:intergenic 20.0%
!!! ATGATTTTATTTTCAAACGA+GGG - chr2_4:15753893-15753912 None:intergenic 20.0%
!! TCGTTTGAAAATAAAATCAT+GGG + chr2_4:15753893-15753912 Msa0317780:intron 20.0%
!! TCTATATATGTATTTCTTTG+AGG + chr2_4:15754287-15754306 Msa0317780:three_prime_UTR 20.0%
!! TTCGATAACAAAACAAAAAA+AGG - chr2_4:15754328-15754347 None:intergenic 20.0%
!!! TTTTTTTGTTTTGTTATCGA+AGG + chr2_4:15754327-15754346 Msa0317780:three_prime_UTR 20.0%
! TTTGGATGAAAAACAAGTAA+TGG - chr2_4:15748016-15748035 None:intergenic 25.0%
! CAAAAAATAATGAGTCAGTT+TGG - chr2_4:15748034-15748053 None:intergenic 25.0%
!!! AACTGACTCATTATTTTTTG+AGG + chr2_4:15748034-15748053 Msa0317780:five_prime_UTR 25.0%
! TGATTGATACGTCTTATAAT+TGG + chr2_4:15748315-15748334 Msa0317780:five_prime_UTR 25.0%
! CACAATCAAACTACAAAAAT+TGG - chr2_4:15748772-15748791 None:intergenic 25.0%
!! CAATTTTTGTAGTTTGATTG+TGG + chr2_4:15748770-15748789 Msa0317780:five_prime_UTR 25.0%
!!! AAGTTTTGTAAGTATGTCTA+TGG + chr2_4:15748945-15748964 Msa0317780:five_prime_UTR 25.0%
! ATGTCTATGGTAAAAAAGAT+AGG + chr2_4:15748958-15748977 Msa0317780:five_prime_UTR 25.0%
!! GTTTTTGTATACAACAGATA+AGG + chr2_4:15749156-15749175 Msa0317780:intron 25.0%
! CAACAGTATTCATTCATTAA+TGG - chr2_4:15749287-15749306 None:intergenic 25.0%
! TATCTACCAACTTATTAGTA+CGG - chr2_4:15749342-15749361 None:intergenic 25.0%
! AATGAATGGTACTTTATTGA+AGG + chr2_4:15749447-15749466 Msa0317780:five_prime_UTR 25.0%
! TATTGAAGGAATTATTGCAT+AGG + chr2_4:15749461-15749480 Msa0317780:five_prime_UTR 25.0%
! AATTGAAAATCTTAGTAGTG+CGG + chr2_4:15749855-15749874 Msa0317780:five_prime_UTR 25.0%
! AATATTCAATACCTGCAATA+CGG - chr2_4:15749938-15749957 None:intergenic 25.0%
!!! TGCAGGTATTGAATATTAAA+TGG + chr2_4:15749941-15749960 Msa0317780:intron 25.0%
!!! GCAGGTATTGAATATTAAAT+GGG + chr2_4:15749942-15749961 Msa0317780:intron 25.0%
! TTGCCTTTAGTATATTAACT+CGG + chr2_4:15750168-15750187 Msa0317780:five_prime_UTR 25.0%
! TTACCGAGTTAATATACTAA+AGG - chr2_4:15750174-15750193 None:intergenic 25.0%
! TAGTATATTAACTCGGTAAA+TGG + chr2_4:15750175-15750194 Msa0317780:five_prime_UTR 25.0%
! AGTATATTAACTCGGTAAAT+GGG + chr2_4:15750176-15750195 Msa0317780:five_prime_UTR 25.0%
! ACCTATTTAATGTGATTAGT+TGG + chr2_4:15750239-15750258 Msa0317780:five_prime_UTR 25.0%
! ACCAACTAATCACATTAAAT+AGG - chr2_4:15750243-15750262 None:intergenic 25.0%
! GAGGATATTAAAAGCAAATA+AGG + chr2_4:15750455-15750474 Msa0317780:five_prime_UTR 25.0%
! TTAAAAGCAAATAAGGTTGA+CGG + chr2_4:15750462-15750481 Msa0317780:five_prime_UTR 25.0%
!!! TTTTTTTAGTGTGTTATGTG+AGG + chr2_4:15750965-15750984 Msa0317780:intron 25.0%
! ATACTCTAATGAAAGAAAAC+AGG - chr2_4:15751600-15751619 None:intergenic 25.0%
! ATATTTGAATTGACAGAACA+AGG + chr2_4:15751644-15751663 Msa0317780:intron 25.0%
! TCAAATATAGAGAATAATGC+TGG + chr2_4:15751719-15751738 Msa0317780:intron 25.0%
! AAACAAAACTCGCAAAATTA+GGG - chr2_4:15751889-15751908 None:intergenic 25.0%
! AAAACAAAACTCGCAAAATT+AGG - chr2_4:15751890-15751909 None:intergenic 25.0%
! ATTTACCAAAGCAACAAAAT+TGG + chr2_4:15752337-15752356 Msa0317780:CDS 25.0%
!! GCTTTCAGTTTTCAATATAT+TGG - chr2_4:15752718-15752737 None:intergenic 25.0%
! AATTAGAATTGTTAAGACTC+AGG + chr2_4:15752738-15752757 Msa0317780:intron 25.0%
! TGAATGTTGTATCTATTGTT+TGG + chr2_4:15752825-15752844 Msa0317780:intron 25.0%
! GAATGTTGTATCTATTGTTT+GGG + chr2_4:15752826-15752845 Msa0317780:intron 25.0%
! CCCTTATAATTCCAAAAATA+CGG - chr2_4:15752872-15752891 None:intergenic 25.0%
!!! CCGTATTTTTGGAATTATAA+GGG + chr2_4:15752869-15752888 Msa0317780:intron 25.0%
!!! CGTATTTTTGGAATTATAAG+GGG + chr2_4:15752870-15752889 Msa0317780:intron 25.0%
!!! ATGTTATGTTAATTTGTTCC+CGG + chr2_4:15752903-15752922 Msa0317780:intron 25.0%
! GAATAACTCACTAGAATATA+TGG + chr2_4:15752926-15752945 Msa0317780:intron 25.0%
!!! ACTGTCATTATTTTTTTCCT+GGG - chr2_4:15753064-15753083 None:intergenic 25.0%
!!! AACTGTCATTATTTTTTTCC+TGG - chr2_4:15753065-15753084 None:intergenic 25.0%
! CTATTTGACAGGAATAAAAA+TGG - chr2_4:15753114-15753133 None:intergenic 25.0%
!! CATTTTTATTCCTGTCAAAT+AGG + chr2_4:15753112-15753131 Msa0317780:intron 25.0%
!! ATTTTCACAGAAATTTACCT+GGG - chr2_4:15753154-15753173 None:intergenic 25.0%
! AACAATCAATTTCATATAGG+AGG - chr2_4:15753206-15753225 None:intergenic 25.0%
! CATGTGATATCAATATTTCT+TGG + chr2_4:15753234-15753253 Msa0317780:intron 25.0%
!! GATAATTTTCTTTGTTCCAT+TGG + chr2_4:15753348-15753367 Msa0317780:intron 25.0%
! TGTTCAATAGTATAATTCCT+AGG - chr2_4:15753612-15753631 None:intergenic 25.0%
! ATTCCAACATTTATATTCCT+GGG + chr2_4:15753664-15753683 Msa0317780:intron 25.0%
! TAAAATTGAAACCCAAGAAT+AGG - chr2_4:15753752-15753771 None:intergenic 25.0%
!!! CATGATTTTATTTTCAAACG+AGG - chr2_4:15753894-15753913 None:intergenic 25.0%
! CTCGTTTGAAAATAAAATCA+TGG + chr2_4:15753892-15753911 Msa0317780:intron 25.0%
!!! TATATAGATAAAGGGGTATT+AGG - chr2_4:15754275-15754294 None:intergenic 25.0%
! TTATCGAAGGTCATATATAA+AGG + chr2_4:15754340-15754359 Msa0317780:three_prime_UTR 25.0%
ATGAGAAATCAAACACTAGA+GGG + chr2_4:15748121-15748140 Msa0317780:five_prime_UTR 30.0%
AATCAAAGTGTGAGATTAAG+TGG + chr2_4:15748268-15748287 Msa0317780:five_prime_UTR 30.0%
! CTCTTAAGAAGCATAGTTTA+TGG + chr2_4:15748395-15748414 Msa0317780:five_prime_UTR 30.0%
!!! TTTTGTGCAATAGAGTATTG+TGG + chr2_4:15748475-15748494 Msa0317780:five_prime_UTR 30.0%
AACTAATGTGTGCATTACTT+TGG + chr2_4:15748577-15748596 Msa0317780:five_prime_UTR 30.0%
ACTAATGTGTGCATTACTTT+GGG + chr2_4:15748578-15748597 Msa0317780:five_prime_UTR 30.0%
ATTACTTTGGGTAGGATTAT+TGG + chr2_4:15748590-15748609 Msa0317780:five_prime_UTR 30.0%
TTGTTAAGCAATAGTAGTGA+TGG + chr2_4:15748613-15748632 Msa0317780:five_prime_UTR 30.0%
TATGTTAGTAGTGCATAACA+CGG + chr2_4:15748639-15748658 Msa0317780:five_prime_UTR 30.0%
! AGATTTTGTTCAAGTGTTAG+TGG + chr2_4:15748721-15748740 Msa0317780:five_prime_UTR 30.0%
AACATATGTCGAAAGATTTG+TGG + chr2_4:15748829-15748848 Msa0317780:five_prime_UTR 30.0%
! GTCGCACTTTTGTTAAAAAA+TGG + chr2_4:15748851-15748870 Msa0317780:five_prime_UTR 30.0%
ATCTACCAACTTATTAGTAC+GGG - chr2_4:15749341-15749360 None:intergenic 30.0%
TCTTCATATCCACAAGATAT+CGG - chr2_4:15749417-15749436 None:intergenic 30.0%
AAGACCTATATAGGAATGAA+TGG + chr2_4:15749433-15749452 Msa0317780:five_prime_UTR 30.0%
AGTACCATTCATTCCTATAT+AGG - chr2_4:15749440-15749459 None:intergenic 30.0%
ACAAAGGTCTAGATGTTTAA+AGG - chr2_4:15749533-15749552 None:intergenic 30.0%
TAAACATCTAGACCTTTGTT+TGG + chr2_4:15749534-15749553 Msa0317780:five_prime_UTR 30.0%
! CTGTATCATTCTTTTGTTGA+TGG - chr2_4:15749891-15749910 None:intergenic 30.0%
GATACAGTTATACACATTTC+TGG + chr2_4:15749904-15749923 Msa0317780:five_prime_UTR 30.0%
!!! AAACCTTTTTTCAAATGCGA+AGG + chr2_4:15750138-15750157 Msa0317780:intron 30.0%
TAACCTTCGCATTTGAAAAA+AGG - chr2_4:15750144-15750163 None:intergenic 30.0%
! TTAATGTGATTAGTTGGTTG+AGG + chr2_4:15750245-15750264 Msa0317780:five_prime_UTR 30.0%
AAGCTTGCACATCAAAAAAA+GGG - chr2_4:15750359-15750378 None:intergenic 30.0%
TAAGCTTGCACATCAAAAAA+AGG - chr2_4:15750360-15750379 None:intergenic 30.0%
! TTTTGATGTGCAAGCTTATA+TGG + chr2_4:15750362-15750381 Msa0317780:five_prime_UTR 30.0%
AAAGTGTAGTAAGATTGATG+CGG + chr2_4:15750548-15750567 Msa0317780:five_prime_UTR 30.0%
TGGTGAAGAGGAAAAAAAAT+TGG + chr2_4:15750644-15750663 Msa0317780:five_prime_UTR 30.0%
TTGGAAGAAGAAAATGATGA+TGG + chr2_4:15750663-15750682 Msa0317780:five_prime_UTR 30.0%
TGGAAGAAGAAAATGATGAT+GGG + chr2_4:15750664-15750683 Msa0317780:five_prime_UTR 30.0%
GGGTGAAGAAGAAAAAAAAA+TGG + chr2_4:15750710-15750729 Msa0317780:five_prime_UTR 30.0%
ATGGAAGAAGATAAAGACAA+TGG + chr2_4:15750729-15750748 Msa0317780:five_prime_UTR 30.0%
TGGAAGAAGATAAAGACAAT+GGG + chr2_4:15750730-15750749 Msa0317780:five_prime_UTR 30.0%
GGCTGAAAAGGAAAAAAAAA+AGG + chr2_4:15750776-15750795 Msa0317780:five_prime_UTR 30.0%
TTTATTCTGCACACATGAAA+AGG + chr2_4:15750834-15750853 Msa0317780:exon 30.0%
!!! AACTACATTTTTTCATGTCG+CGG + chr2_4:15750896-15750915 Msa0317780:intron 30.0%
CCAGCAATATTAATAACCTA+AGG - chr2_4:15751146-15751165 None:intergenic 30.0%
CCTTAGGTTATTAATATTGC+TGG + chr2_4:15751143-15751162 Msa0317780:intron 30.0%
!! TGTCAGATTATTTTTCGGTA+CGG + chr2_4:15751222-15751241 Msa0317780:intron 30.0%
TAAAGGTTGAATACACATCA+CGG - chr2_4:15751275-15751294 None:intergenic 30.0%
!! TGAGGTAGTTGATGATTTAA+AGG + chr2_4:15751330-15751349 Msa0317780:CDS 30.0%
AGTCATCATTATGATGTTGT+AGG + chr2_4:15751476-15751495 Msa0317780:intron 30.0%
!!! AGGAGTTTGCTGATTTATTT+TGG + chr2_4:15751664-15751683 Msa0317780:intron 30.0%
!!! CATTGTGGTTTTGTCTATAT+GGG + chr2_4:15751778-15751797 Msa0317780:intron 30.0%
AACAAAACTCGCAAAATTAG+GGG - chr2_4:15751888-15751907 None:intergenic 30.0%
! TTACATAAAGTCCGTTTTGA+AGG + chr2_4:15752237-15752256 Msa0317780:intron 30.0%
!! TACATAAAGTCCGTTTTGAA+GGG + chr2_4:15752238-15752257 Msa0317780:intron 30.0%
! GTAGTGGAATTGATGAATAA+AGG + chr2_4:15752261-15752280 Msa0317780:CDS 30.0%
AATAAAGGAGCGAACAATAA+AGG + chr2_4:15752276-15752295 Msa0317780:CDS 30.0%
GAACAATAAAGGAGATATGT+TGG + chr2_4:15752287-15752306 Msa0317780:CDS 30.0%
AGATATGTTGGAATCTTCTT+TGG + chr2_4:15752299-15752318 Msa0317780:CDS 30.0%
!! ACTAACCAATTTTGTTGCTT+TGG - chr2_4:15752345-15752364 None:intergenic 30.0%
! AAATTTTGCAGTCATGATTG+TGG + chr2_4:15752440-15752459 Msa0317780:intron 30.0%
! AATTTTGCAGTCATGATTGT+GGG + chr2_4:15752441-15752460 Msa0317780:intron 30.0%
GGTATATGTTCTTAAGTACT+TGG + chr2_4:15752463-15752482 Msa0317780:CDS 30.0%
AAGCATTACCAATGAATAGT+CGG - chr2_4:15752531-15752550 None:intergenic 30.0%
CAATTAATCATCATTGACAG+CGG + chr2_4:15752632-15752651 Msa0317780:intron 30.0%
GCAATTAGGCTGTATATTTA+GGG - chr2_4:15752686-15752705 None:intergenic 30.0%
TGCAATTAGGCTGTATATTT+AGG - chr2_4:15752687-15752706 None:intergenic 30.0%
!! CTATTGTTTGGGTTTTTAAC+TGG + chr2_4:15752837-15752856 Msa0317780:intron 30.0%
!!! GCCGTATTTTTGGAATTATA+AGG + chr2_4:15752868-15752887 Msa0317780:intron 30.0%
!! TGTTATGTTAATTTGTTCCC+GGG + chr2_4:15752904-15752923 Msa0317780:intron 30.0%
ATATTCTAGTGAGTTATTCC+CGG - chr2_4:15752925-15752944 None:intergenic 30.0%
GAATTACATATGCCATTGTT+TGG + chr2_4:15752998-15753017 Msa0317780:intron 30.0%
GGAACAAAAAAAATATGCCT+TGG + chr2_4:15753027-15753046 Msa0317780:intron 30.0%
AATAAAAATGGGCAAAACGT+GGG - chr2_4:15753102-15753121 None:intergenic 30.0%
TTATTCCTGTCAAATAGGAT+TGG + chr2_4:15753117-15753136 Msa0317780:intron 30.0%
! GATTTTCACAGAAATTTACC+TGG - chr2_4:15753155-15753174 None:intergenic 30.0%
ATAGAAGTCCAAACTCAATT+GGG - chr2_4:15753381-15753400 None:intergenic 30.0%
!!! GACTTCTATGCATTGATTTT+GGG + chr2_4:15753392-15753411 Msa0317780:intron 30.0%
TGATGCCATAAAAAATTCCT+AGG + chr2_4:15753592-15753611 Msa0317780:intron 30.0%
!!! CACTTTTTTCTACAATTTCC+TGG + chr2_4:15753634-15753653 Msa0317780:intron 30.0%
! AATGTTGGAATCTTATTTCC+AGG - chr2_4:15753655-15753674 None:intergenic 30.0%
GATTCCAACATTTATATTCC+TGG + chr2_4:15753663-15753682 Msa0317780:intron 30.0%
TTTCCCAGGAATATAAATGT+TGG - chr2_4:15753670-15753689 None:intergenic 30.0%
GGGTTACAAAATTAATACCT+GGG - chr2_4:15753699-15753718 None:intergenic 30.0%
AGGGTTACAAAATTAATACC+TGG - chr2_4:15753700-15753719 None:intergenic 30.0%
AATAGGATTCCCAACATTTA+GGG - chr2_4:15753735-15753754 None:intergenic 30.0%
TATATTTCATTCCGATCTCA+CGG + chr2_4:15753852-15753871 Msa0317780:intron 30.0%
!! TTTATTTTCAAACGAGGGTT+GGG - chr2_4:15753888-15753907 None:intergenic 30.0%
!!! TTTTATTTTCAAACGAGGGT+TGG - chr2_4:15753889-15753908 None:intergenic 30.0%
TGTGTAAGTTATTTGTTTCC+AGG + chr2_4:15753917-15753936 Msa0317780:intron 30.0%
ACTGTGTATAAAACATTTCC+TGG - chr2_4:15753938-15753957 None:intergenic 30.0%
TTATACACAGTAACACACAT+TGG + chr2_4:15753947-15753966 Msa0317780:intron 30.0%
TGTAAGTAAATGCAGTTAGT+TGG - chr2_4:15754031-15754050 None:intergenic 30.0%
AACTAACTGCATTTACTTAC+AGG + chr2_4:15754030-15754049 Msa0317780:intron 30.0%
TGCAGTATCTAATACAAATC+TGG - chr2_4:15754122-15754141 None:intergenic 30.0%
! GCGTTTTGTATAATATTCGT+TGG + chr2_4:15754222-15754241 Msa0317780:three_prime_UTR 30.0%
TAATATTCGTTGGTGTATCA+TGG + chr2_4:15754232-15754251 Msa0317780:three_prime_UTR 30.0%
!! ATAAAGGGGTATTAGGATAA+AGG - chr2_4:15754268-15754287 None:intergenic 30.0%
GATGAGAAATCAAACACTAG+AGG + chr2_4:15748120-15748139 Msa0317780:five_prime_UTR 35.0%
ACTTACTTAACTCCCTAAAC+AGG - chr2_4:15748227-15748246 None:intergenic 35.0%
GTATTGTGGTGAAGTTATTC+AGG + chr2_4:15748489-15748508 Msa0317780:five_prime_UTR 35.0%
TGAAGTTATTCAGGTGCTTT+GGG + chr2_4:15748498-15748517 Msa0317780:five_prime_UTR 35.0%
!!! TTTTGTGCAATAGAGTACTG+TGG + chr2_4:15748540-15748559 Msa0317780:five_prime_UTR 35.0%
CTCTACGTGATATCATTTAG+AGG - chr2_4:15748801-15748820 None:intergenic 35.0%
TTGTAACGTGTGTTGAGAAT+AGG + chr2_4:15749097-15749116 Msa0317780:five_prime_UTR 35.0%
AGATAAGGTGAACATCATGA+GGG + chr2_4:15749171-15749190 Msa0317780:intron 35.0%
TGAGGGAAAACAAACGAAAA+AGG + chr2_4:15749188-15749207 Msa0317780:intron 35.0%
GAGGGAAAACAAACGAAAAA+GGG + chr2_4:15749189-15749208 Msa0317780:intron 35.0%
TCTACCAACTTATTAGTACG+GGG - chr2_4:15749340-15749359 None:intergenic 35.0%
ATATCCACAAGATATCGGAA+CGG - chr2_4:15749412-15749431 None:intergenic 35.0%
GTGGATATGAAGACCTATAT+AGG + chr2_4:15749424-15749443 Msa0317780:five_prime_UTR 35.0%
TGAAGGAATTATTGCATAGG+TGG + chr2_4:15749464-15749483 Msa0317780:five_prime_UTR 35.0%
GAAGGAATTATTGCATAGGT+GGG + chr2_4:15749465-15749484 Msa0317780:five_prime_UTR 35.0%
!! TATTGTAGGAGAGTGTTTAC+CGG + chr2_4:15749570-15749589 Msa0317780:five_prime_UTR 35.0%
TTTACCGGAAACTAGTGATA+GGG + chr2_4:15749585-15749604 Msa0317780:five_prime_UTR 35.0%
TAGTGTACATTCTAAGCTGA+AGG + chr2_4:15749657-15749676 Msa0317780:five_prime_UTR 35.0%
CGGAAAATATAACACACACA+AGG - chr2_4:15749737-15749756 None:intergenic 35.0%
ACGCTCTTAGTACCTATAAT+TGG + chr2_4:15749809-15749828 Msa0317780:five_prime_UTR 35.0%
CGCTCTTAGTACCTATAATT+GGG + chr2_4:15749810-15749829 Msa0317780:five_prime_UTR 35.0%
GCTCTTAGTACCTATAATTG+GGG + chr2_4:15749811-15749830 Msa0317780:five_prime_UTR 35.0%
GTCATTTGATTAGATATGGG+CGG + chr2_4:15750024-15750043 Msa0317780:intron 35.0%
! GTTTTCCACGCATTAACAAT+TGG + chr2_4:15750083-15750102 Msa0317780:five_prime_UTR 35.0%
CATTAACAATTGGACCAAAG+TGG + chr2_4:15750093-15750112 Msa0317780:five_prime_UTR 35.0%
!! TTTTCCATGTCTTGTTGTGT+TGG - chr2_4:15750279-15750298 None:intergenic 35.0%
ACCAACTTGAGAATGGTTAA+CGG - chr2_4:15750319-15750338 None:intergenic 35.0%
!! AACCATTCTCAAGTTGGTAT+TGG + chr2_4:15750321-15750340 Msa0317780:five_prime_UTR 35.0%
CTTATATGGCTGAACATCAA+AGG + chr2_4:15750376-15750395 Msa0317780:five_prime_UTR 35.0%
GGAAAGCAAATCTTTGTGTT+CGG - chr2_4:15750409-15750428 None:intergenic 35.0%
! AACACAAAGATTTGCTTTCC+CGG + chr2_4:15750409-15750428 Msa0317780:five_prime_UTR 35.0%
ATATCCTCATATCATCCTCA+AGG - chr2_4:15750443-15750462 None:intergenic 35.0%
AAGATTGATGCGGATAATGA+TGG + chr2_4:15750558-15750577 Msa0317780:five_prime_UTR 35.0%
AGATTGATGCGGATAATGAT+GGG + chr2_4:15750559-15750578 Msa0317780:five_prime_UTR 35.0%
!! TAATGATGGGTTGAAAAGTG+AGG + chr2_4:15750572-15750591 Msa0317780:five_prime_UTR 35.0%
GAAAAGCAGAAGAAAATGGT+GGG + chr2_4:15750598-15750617 Msa0317780:five_prime_UTR 35.0%
AAGTTGGATGATGAAGATGT+TGG + chr2_4:15750624-15750643 Msa0317780:five_prime_UTR 35.0%
!! AGAAAATGATGATGGGATGA+AGG + chr2_4:15750671-15750690 Msa0317780:five_prime_UTR 35.0%
!! AAGGTTGATGATGAAGATGT+GGG + chr2_4:15750690-15750709 Msa0317780:five_prime_UTR 35.0%
AGAAGATAAAGACAATGGGA+TGG + chr2_4:15750734-15750753 Msa0317780:five_prime_UTR 35.0%
! TGATGATGATATGGCTGAAA+AGG + chr2_4:15750764-15750783 Msa0317780:five_prime_UTR 35.0%
!!! ACTACATTTTTTCATGTCGC+GGG + chr2_4:15750897-15750916 Msa0317780:intron 35.0%
AGGTTATTAATATTGCTGGC+AGG + chr2_4:15751147-15751166 Msa0317780:intron 35.0%
CATGATGAAGTTCGAAAACA+TGG + chr2_4:15751179-15751198 Msa0317780:CDS 35.0%
TGTTAGGCATGGGATAATAA+AGG - chr2_4:15751292-15751311 None:intergenic 35.0%
AGGTGTAGATGATTTCTGAT+TGG + chr2_4:15751496-15751515 Msa0317780:intron 35.0%
! TTGTCTAGAATGTTGATGAG+TGG + chr2_4:15751525-15751544 Msa0317780:intron 35.0%
! TGTCTAGAATGTTGATGAGT+GGG + chr2_4:15751526-15751545 Msa0317780:intron 35.0%
CTCTACCTAAAATTCCCTTT+AGG + chr2_4:15751743-15751762 Msa0317780:intron 35.0%
!!! GCATTGTGGTTTTGTCTATA+TGG + chr2_4:15751777-15751796 Msa0317780:intron 35.0%
GGGTTTGTGTTGTATTAGTT+CGG + chr2_4:15751798-15751817 Msa0317780:intron 35.0%
TTTGTGTTGTATTAGTTCGG+TGG + chr2_4:15751801-15751820 Msa0317780:intron 35.0%
TTGTGTTGTATTAGTTCGGT+GGG + chr2_4:15751802-15751821 Msa0317780:intron 35.0%
! GTTTTGTGTGGTTTTTTGTG+CGG + chr2_4:15751831-15751850 Msa0317780:intron 35.0%
! TTTTGTGTGGTTTTTTGTGC+GGG + chr2_4:15751832-15751851 Msa0317780:intron 35.0%
GCAAAATTAGGGGTTACAAT+AGG - chr2_4:15751878-15751897 None:intergenic 35.0%
!!! CGAATTTGTTTTATGCAACG+TGG + chr2_4:15751973-15751992 Msa0317780:intron 35.0%
!!! ACATAAAGTCCGTTTTGAAG+GGG + chr2_4:15752239-15752258 Msa0317780:intron 35.0%
TATGTTGGAATCTTCTTTGG+AGG + chr2_4:15752302-15752321 Msa0317780:CDS 35.0%
! ATTTTGCAGTCATGATTGTG+GGG + chr2_4:15752442-15752461 Msa0317780:intron 35.0%
TTCTTAAGTACTTGGAGTTG+TGG + chr2_4:15752471-15752490 Msa0317780:CDS 35.0%
TCTTAAGTACTTGGAGTTGT+GGG + chr2_4:15752472-15752491 Msa0317780:CDS 35.0%
AGCATTACCAATGAATAGTC+GGG - chr2_4:15752530-15752549 None:intergenic 35.0%
ATTGGATGTCTACTGCAATT+AGG - chr2_4:15752700-15752719 None:intergenic 35.0%
TAGAATTGTTAAGACTCAGG+TGG + chr2_4:15752741-15752760 Msa0317780:intron 35.0%
!! TTGTTTGGGTTTTTAACTGG+AGG + chr2_4:15752840-15752859 Msa0317780:intron 35.0%
TATTCTAGTGAGTTATTCCC+GGG - chr2_4:15752924-15752943 None:intergenic 35.0%
GGAAAATAAAAATGGTTCCC+AGG + chr2_4:15752963-15752982 Msa0317780:intron 35.0%
AATTCCAACCTTAGATTCCT+GGG - chr2_4:15752983-15753002 None:intergenic 35.0%
TAATTCCAACCTTAGATTCC+TGG - chr2_4:15752984-15753003 None:intergenic 35.0%
ATATGCCATTGTTTGGTAGA+TGG + chr2_4:15753005-15753024 Msa0317780:intron 35.0%
TATGCCATTGTTTGGTAGAT+GGG + chr2_4:15753006-15753025 Msa0317780:intron 35.0%
CCTGGGTATAATTTATTCCA+AGG - chr2_4:15753047-15753066 None:intergenic 35.0%
CCTTGGAATAAATTATACCC+AGG + chr2_4:15753044-15753063 Msa0317780:intron 35.0%
GAATAAAAATGGGCAAAACG+TGG - chr2_4:15753103-15753122 None:intergenic 35.0%
ACTTTCCAATCCTATTTGAC+AGG - chr2_4:15753125-15753144 None:intergenic 35.0%
!!! GATTGGAAAGTTTTATTCCC+AGG + chr2_4:15753134-15753153 Msa0317780:intron 35.0%
!! AGGTGATAAGCATTGGTTAA+GGG - chr2_4:15753186-15753205 None:intergenic 35.0%
ATATAGGAGGTGATAAGCAT+TGG - chr2_4:15753193-15753212 None:intergenic 35.0%
TCAATTGGGGAAAATTCCAA+TGG - chr2_4:15753367-15753386 None:intergenic 35.0%
! GAATTTTCCCCAATTGAGTT+TGG + chr2_4:15753370-15753389 Msa0317780:intron 35.0%
TAGAAGTCCAAACTCAATTG+GGG - chr2_4:15753380-15753399 None:intergenic 35.0%
CATAGAAGTCCAAACTCAAT+TGG - chr2_4:15753382-15753401 None:intergenic 35.0%
!!! GGACTTCTATGCATTGATTT+TGG + chr2_4:15753391-15753410 Msa0317780:intron 35.0%
!!! ATGCATTGATTTTGGGATGA+TGG + chr2_4:15753399-15753418 Msa0317780:intron 35.0%
TTACACATCCCTTTCCATAT+TGG - chr2_4:15753425-15753444 None:intergenic 35.0%
GTAATACAAGAAAGAGAACC+TGG + chr2_4:15753441-15753460 Msa0317780:intron 35.0%
ACAGGATTTAGAAATGTCGA+TGG + chr2_4:15753537-15753556 Msa0317780:intron 35.0%
!! AAATGTCGATGGTATTGACA+GGG + chr2_4:15753548-15753567 Msa0317780:intron 35.0%
GAATAGGATTCCCAACATTT+AGG - chr2_4:15753736-15753755 None:intergenic 35.0%
AATGTTGGGAATCCTATTCT+TGG + chr2_4:15753737-15753756 Msa0317780:intron 35.0%
ATGTTGGGAATCCTATTCTT+GGG + chr2_4:15753738-15753757 Msa0317780:intron 35.0%
GTTAACATGTGTAACATTCC+CGG + chr2_4:15753789-15753808 Msa0317780:intron 35.0%
TTAACATGTGTAACATTCCC+GGG + chr2_4:15753790-15753809 Msa0317780:intron 35.0%
ATATTTCATTCCGATCTCAC+GGG + chr2_4:15753853-15753872 Msa0317780:intron 35.0%
! TTATTTTCAAACGAGGGTTG+GGG - chr2_4:15753887-15753906 None:intergenic 35.0%
TAACTGCATTTACTTACAGG+AGG + chr2_4:15754033-15754052 Msa0317780:intron 35.0%
TTAACCGATCAATAAATCCG+CGG - chr2_4:15754152-15754171 None:intergenic 35.0%
TTTGTCTAACTTGATTGTGC+TGG + chr2_4:15754179-15754198 Msa0317780:three_prime_UTR 35.0%
TGTCGGATGAGTTGTTCAAA+TGG + chr2_4:15747963-15747982 Msa0317780:five_prime_UTR 40.0%
GTCGGATGAGTTGTTCAAAT+GGG + chr2_4:15747964-15747983 Msa0317780:five_prime_UTR 40.0%
AGACAATCCAACTCCTGTTT+AGG + chr2_4:15748211-15748230 Msa0317780:five_prime_UTR 40.0%
GACAATCCAACTCCTGTTTA+GGG + chr2_4:15748212-15748231 Msa0317780:five_prime_UTR 40.0%
TTAACTCCCTAAACAGGAGT+TGG - chr2_4:15748221-15748240 None:intergenic 40.0%
GTGAAGTTATTCAGGTGCTT+TGG + chr2_4:15748497-15748516 Msa0317780:five_prime_UTR 40.0%
GAAGTTATTCAGGTGCTTTG+GGG + chr2_4:15748499-15748518 Msa0317780:five_prime_UTR 40.0%
ATGTGTGCATTACTTTGGGT+AGG + chr2_4:15748582-15748601 Msa0317780:five_prime_UTR 40.0%
! AGTGTTAGTGGATGATGTGA+TGG + chr2_4:15748733-15748752 Msa0317780:five_prime_UTR 40.0%
CAGATAAGGTGAACATCATG+AGG + chr2_4:15749170-15749189 Msa0317780:intron 40.0%
CGAAAAAGGGATTGTGTTGT+TGG + chr2_4:15749202-15749221 Msa0317780:intron 40.0%
GGCATTTGAGTCTTTATCTG+TGG - chr2_4:15749319-15749338 None:intergenic 40.0%
AATGCCCCGTACTAATAAGT+TGG + chr2_4:15749333-15749352 Msa0317780:five_prime_UTR 40.0%
TTTGCGCATCAGACAATGTT+CGG - chr2_4:15749369-15749388 None:intergenic 40.0%
! AGTAGCTTGGGATTTAGAGT+AGG + chr2_4:15749493-15749512 Msa0317780:five_prime_UTR 40.0%
!! CTAGACCTTTGTTTGGCTTT+AGG + chr2_4:15749541-15749560 Msa0317780:five_prime_UTR 40.0%
GCAAACCTAAAGCCAAACAA+AGG - chr2_4:15749549-15749568 None:intergenic 40.0%
! GCTTTAGGTTTGCCTATTGT+AGG + chr2_4:15749556-15749575 Msa0317780:five_prime_UTR 40.0%
GGTAAACACTCTCCTACAAT+AGG - chr2_4:15749571-15749590 None:intergenic 40.0%
GTTTACCGGAAACTAGTGAT+AGG + chr2_4:15749584-15749603 Msa0317780:five_prime_UTR 40.0%
! CTAACCCTATCACTAGTTTC+CGG - chr2_4:15749592-15749611 None:intergenic 40.0%
AACAGCAACACCCCAATTAT+AGG - chr2_4:15749824-15749843 None:intergenic 40.0%
GAACATTTATCCCTAACCAG+TGG + chr2_4:15750049-15750068 Msa0317780:five_prime_UTR 40.0%
! CTTAATTGGACCACTGGTTA+GGG - chr2_4:15750062-15750081 None:intergenic 40.0%
AAAACGCTTAATTGGACCAC+TGG - chr2_4:15750068-15750087 None:intergenic 40.0%
ATGCGTGGAAAACGCTTAAT+TGG - chr2_4:15750076-15750095 None:intergenic 40.0%
TTGGTCCAATTGTTAATGCG+TGG - chr2_4:15750091-15750110 None:intergenic 40.0%
AACAATTGGACCAAAGTGGA+TGG + chr2_4:15750097-15750116 Msa0317780:five_prime_UTR 40.0%
! TGATTAGTTGGTTGAGGACT+TGG + chr2_4:15750251-15750270 Msa0317780:five_prime_UTR 40.0%
CTCCAATACCAACTTGAGAA+TGG - chr2_4:15750326-15750345 None:intergenic 40.0%
TATGGCTGAACATCAAAGGT+TGG + chr2_4:15750380-15750399 Msa0317780:five_prime_UTR 40.0%
! ACACAAAGATTTGCTTTCCC+GGG + chr2_4:15750410-15750429 Msa0317780:five_prime_UTR 40.0%
CAATCCTTGAGGATGATATG+AGG + chr2_4:15750436-15750455 Msa0317780:five_prime_UTR 40.0%
AAGCAAATAAGGTTGACGGT+AGG + chr2_4:15750466-15750485 Msa0317780:five_prime_UTR 40.0%
AGCAAATAAGGTTGACGGTA+GGG + chr2_4:15750467-15750486 Msa0317780:five_prime_UTR 40.0%
TATTCCGATTCCAAGTAGCA+TGG + chr2_4:15750494-15750513 Msa0317780:five_prime_UTR 40.0%
! ACTTCCATGCTACTTGGAAT+CGG - chr2_4:15750501-15750520 None:intergenic 40.0%
ATTCCAAGTAGCATGGAAGT+AGG + chr2_4:15750501-15750520 Msa0317780:five_prime_UTR 40.0%
GGAAAAGCAGAAGAAAATGG+TGG + chr2_4:15750597-15750616 Msa0317780:five_prime_UTR 40.0%
! AGAAAATGGTGGGATGAAGT+TGG + chr2_4:15750608-15750627 Msa0317780:five_prime_UTR 40.0%
! TGATGAAGATGTTGGTGAAG+AGG + chr2_4:15750632-15750651 Msa0317780:five_prime_UTR 40.0%
!! GAAGGTTGATGATGAAGATG+TGG + chr2_4:15750689-15750708 Msa0317780:five_prime_UTR 40.0%
TAAAGACAATGGGATGGAGT+TGG + chr2_4:15750740-15750759 Msa0317780:five_prime_UTR 40.0%
! GGAGTTGGATGATGATGATA+TGG + chr2_4:15750755-15750774 Msa0317780:five_prime_UTR 40.0%
! GGAGTTTTTCCAATGCATGA+AGG + chr2_4:15751010-15751029 Msa0317780:CDS 40.0%
! GATTTAAAGGCACATCCTGA+AGG + chr2_4:15751343-15751362 Msa0317780:CDS 40.0%
TCAAGATGTATATGCCTCGT+TGG + chr2_4:15751395-15751414 Msa0317780:CDS 40.0%
AAGAAAACAGGCAGTGATGA+AGG - chr2_4:15751588-15751607 None:intergenic 40.0%
! CACTGCCTAAAGGGAATTTT+AGG - chr2_4:15751751-15751770 None:intergenic 40.0%
CTAAAATTCCCTTTAGGCAG+TGG + chr2_4:15751749-15751768 Msa0317780:intron 40.0%
! TGTGTTGTATTAGTTCGGTG+GGG + chr2_4:15751803-15751822 Msa0317780:intron 40.0%
!!! TTTGTGTGGTTTTTTGTGCG+GGG + chr2_4:15751833-15751852 Msa0317780:intron 40.0%
CATACATTGTCCTCTTCCTA+TGG - chr2_4:15752076-15752095 None:intergenic 40.0%
ACAGTGAAAGAAATGCCTCA+AGG + chr2_4:15752111-15752130 Msa0317780:CDS 40.0%
ATTCCACTACCCCTTCAAAA+CGG - chr2_4:15752251-15752270 None:intergenic 40.0%
! ATCTTCTTTGGAGGTTGTAG+TGG + chr2_4:15752311-15752330 Msa0317780:CDS 40.0%
GCTGTATATTTAGGGAATGC+GGG - chr2_4:15752678-15752697 None:intergenic 40.0%
GGCTGTATATTTAGGGAATG+CGG - chr2_4:15752679-15752698 None:intergenic 40.0%
TATATGGGTGCGTTTGTTTG+AGG + chr2_4:15752942-15752961 Msa0317780:intron 40.0%
AAATGGTTCCCAGGAATCTA+AGG + chr2_4:15752972-15752991 Msa0317780:intron 40.0%
TGTTCCCATCTACCAAACAA+TGG - chr2_4:15753013-15753032 None:intergenic 40.0%
!! GAGGTGATAAGCATTGGTTA+AGG - chr2_4:15753187-15753206 None:intergenic 40.0%
!!! TTTTGGGATGATGGCCAATA+TGG + chr2_4:15753408-15753427 Msa0317780:intron 40.0%
! GATGATGGCCAATATGGAAA+GGG + chr2_4:15753414-15753433 Msa0317780:intron 40.0%
! AATCCTTCCTGAGTTCTAGT+CGG - chr2_4:15753497-15753516 None:intergenic 40.0%
CTCAGGAAGGATTAGAGTTT+AGG + chr2_4:15753504-15753523 Msa0317780:intron 40.0%
AGTTTAGGCTCTTCATCAAC+AGG + chr2_4:15753519-15753538 Msa0317780:intron 40.0%
!! GAAATGTCGATGGTATTGAC+AGG + chr2_4:15753547-15753566 Msa0317780:intron 40.0%
!! AATGTCGATGGTATTGACAG+GGG + chr2_4:15753549-15753568 Msa0317780:intron 40.0%
! TTTAGGGTGCGTTTGTTTGA+GGG - chr2_4:15753719-15753738 None:intergenic 40.0%
! ATTTAGGGTGCGTTTGTTTG+AGG - chr2_4:15753720-15753739 None:intergenic 40.0%
AACAAACGCACCCTAAATGT+TGG + chr2_4:15753722-15753741 Msa0317780:intron 40.0%
ACAAACGCACCCTAAATGTT+GGG + chr2_4:15753723-15753742 Msa0317780:intron 40.0%
GGAAAAAATTCCCGTGAGAT+CGG - chr2_4:15753866-15753885 None:intergenic 40.0%
ACTTACAGGAGGATATCCTT+CGG + chr2_4:15754044-15754063 Msa0317780:intron 40.0%
CAGTGAAATTGTTTGTCGTC+TGG + chr2_4:15754072-15754091 Msa0317780:CDS 40.0%
ATACCCGCGGATTTATTGAT+CGG + chr2_4:15754145-15754164 Msa0317780:CDS 40.0%
TAACCGATCAATAAATCCGC+GGG - chr2_4:15754151-15754170 None:intergenic 40.0%
GGGCAGAAATAATGTGAGAC+TGG + chr2_4:15748166-15748185 Msa0317780:five_prime_UTR 45.0%
AAGTCCACTGCTACATTCTG+AGG - chr2_4:15748451-15748470 None:intergenic 45.0%
!! TGCTTTGGGGTTGCTTTAAC+AGG + chr2_4:15748512-15748531 Msa0317780:five_prime_UTR 45.0%
AACTCCGTTCCGATATCTTG+TGG + chr2_4:15749405-15749424 Msa0317780:five_prime_UTR 45.0%
! TGGGATTTAGAGTAGGCGTT+AGG + chr2_4:15749500-15749519 Msa0317780:five_prime_UTR 45.0%
AAGCTGAAGGTCCTTCAAGA+AGG + chr2_4:15749670-15749689 Msa0317780:five_prime_UTR 45.0%
AGCTGAAGGTCCTTCAAGAA+GGG + chr2_4:15749671-15749690 Msa0317780:five_prime_UTR 45.0%
TCAATACCTGCAATACGGCT+GGG - chr2_4:15749933-15749952 None:intergenic 45.0%
TTCAATACCTGCAATACGGC+TGG - chr2_4:15749934-15749953 None:intergenic 45.0%
! GCTTAATTGGACCACTGGTT+AGG - chr2_4:15750063-15750082 None:intergenic 45.0%
AATTGGACCAAAGTGGATGG+AGG + chr2_4:15750100-15750119 Msa0317780:five_prime_UTR 45.0%
AACATGACCTCCATCCACTT+TGG - chr2_4:15750110-15750129 None:intergenic 45.0%
GGTTCCAACACAACAAGACA+TGG + chr2_4:15750272-15750291 Msa0317780:five_prime_UTR 45.0%
GCCGTTAACCATTCTCAAGT+TGG + chr2_4:15750315-15750334 Msa0317780:five_prime_UTR 45.0%
ATCCTCAAGGATTGAAACCC+GGG - chr2_4:15750430-15750449 None:intergenic 45.0%
CATCCTCAAGGATTGAAACC+CGG - chr2_4:15750431-15750450 None:intergenic 45.0%
CTTCCTACTTCCATGCTACT+TGG - chr2_4:15750507-15750526 None:intergenic 45.0%
AGTAGCATGGAAGTAGGAAG+TGG + chr2_4:15750507-15750526 Msa0317780:five_prime_UTR 45.0%
GTAGCATGGAAGTAGGAAGT+GGG + chr2_4:15750508-15750527 Msa0317780:five_prime_UTR 45.0%
GGAAGTGGGTCAAAACATGT+AGG + chr2_4:15750522-15750541 Msa0317780:five_prime_UTR 45.0%
!! TGATGGGTTGAAAAGTGAGG+CGG + chr2_4:15750575-15750594 Msa0317780:five_prime_UTR 45.0%
GCGGGAAAAGCAGAAGAAAA+TGG + chr2_4:15750594-15750613 Msa0317780:five_prime_UTR 45.0%
CATGCATTGGAAAAACTCCC+CGG - chr2_4:15751009-15751028 None:intergenic 45.0%
! TTTTCCAATGCATGAAGGCG+AGG + chr2_4:15751015-15751034 Msa0317780:CDS 45.0%
CATTGGAGTTTACGTCCTTC+AGG - chr2_4:15751361-15751380 None:intergenic 45.0%
CTGAAGGACGTAAACTCCAA+TGG + chr2_4:15751359-15751378 Msa0317780:CDS 45.0%
!! GTAAACTCCAATGGACTGAG+CGG + chr2_4:15751368-15751387 Msa0317780:CDS 45.0%
TGAATTTCCGCTCAGTCCAT+TGG - chr2_4:15751378-15751397 None:intergenic 45.0%
! TTCCCTTTAGGCAGTGGATT+TGG + chr2_4:15751755-15751774 Msa0317780:intron 45.0%
TGCCAAATCCACTGCCTAAA+GGG - chr2_4:15751760-15751779 None:intergenic 45.0%
ATGCCAAATCCACTGCCTAA+AGG - chr2_4:15751761-15751780 None:intergenic 45.0%
! GTGTTGTATTAGTTCGGTGG+GGG + chr2_4:15751804-15751823 Msa0317780:intron 45.0%
! TGTTGTATTAGTTCGGTGGG+GGG + chr2_4:15751805-15751824 Msa0317780:intron 45.0%
CATGTTACGTGTTGGACCAT+AGG + chr2_4:15752057-15752076 Msa0317780:CDS 45.0%
GAAGAGGACAATGTATGTGC+TGG + chr2_4:15752079-15752098 Msa0317780:CDS 45.0%
ATTATCCAAACGCTGCCTTG+AGG - chr2_4:15752129-15752148 None:intergenic 45.0%
GCAGCGTTTGGATAATGCAA+TGG + chr2_4:15752133-15752152 Msa0317780:intron 45.0%
! TTCTTTGGAGGTTGTAGTGG+TGG + chr2_4:15752314-15752333 Msa0317780:CDS 45.0%
AAGTACTTGGAGTTGTGGGA+TGG + chr2_4:15752476-15752495 Msa0317780:CDS 45.0%
TGTGGGATGGTGAAGCAAAA+TGG + chr2_4:15752489-15752508 Msa0317780:CDS 45.0%
GTGGGATGGTGAAGCAAAAT+GGG + chr2_4:15752490-15752509 Msa0317780:CDS 45.0%
TGGGATGGTGAAGCAAAATG+GGG + chr2_4:15752491-15752510 Msa0317780:CDS 45.0%
GAGTATGCCCGACTATTCAT+TGG + chr2_4:15752520-15752539 Msa0317780:CDS 45.0%
GTATATTTAGGGAATGCGGG+AGG - chr2_4:15752675-15752694 None:intergenic 45.0%
!! GCATTGGTTAAGGGCAGAAT+TGG - chr2_4:15753177-15753196 None:intergenic 45.0%
! GGATGATGGCCAATATGGAA+AGG + chr2_4:15753413-15753432 Msa0317780:intron 45.0%
! AGAACCTGGTTTGTCTAGCA+GGG + chr2_4:15753455-15753474 Msa0317780:intron 45.0%
TAATCCCTGCTAGACAAACC+AGG - chr2_4:15753462-15753481 None:intergenic 45.0%
ACACTCCTACAACTAAGTCC+CGG - chr2_4:15753811-15753830 None:intergenic 45.0%
CAATTTCACTGCGAATCCGA+AGG - chr2_4:15754063-15754082 None:intergenic 45.0%
AGATACTGCAAAGATACCCG+CGG + chr2_4:15754132-15754151 Msa0317780:CDS 45.0%
!!! GATTTTTATTAATAAAATTT+TGG + chr2_4:15748670-15748689 Msa0317780:five_prime_UTR 5.0%
!!! TAAATTTTATCATTAAAATT+AGG + chr2_4:15752001-15752020 Msa0317780:intron 5.0%
!! AAATTTAAAAATTTCAAATT+AGG - chr2_4:15752426-15752445 None:intergenic 5.0%
CTGACCTCAGAATGTAGCAG+TGG + chr2_4:15748444-15748463 Msa0317780:five_prime_UTR 50.0%
TAGGTGGGATGCAAGTAGCT+TGG + chr2_4:15749480-15749499 Msa0317780:five_prime_UTR 50.0%
AGGTGGGATGCAAGTAGCTT+GGG + chr2_4:15749481-15749500 Msa0317780:five_prime_UTR 50.0%
TAGAGTAGGCGTTAGGACTG+TGG + chr2_4:15749507-15749526 Msa0317780:five_prime_UTR 50.0%
GCTGAAGGTCCTTCAAGAAG+GGG + chr2_4:15749672-15749691 Msa0317780:five_prime_UTR 50.0%
CTACGTTGTCCCCTTCTTGA+AGG - chr2_4:15749684-15749703 None:intergenic 50.0%
TTCCCGGGTTTCAATCCTTG+AGG + chr2_4:15750425-15750444 Msa0317780:five_prime_UTR 50.0%
!! GATGGGTTGAAAAGTGAGGC+GGG + chr2_4:15750576-15750595 Msa0317780:five_prime_UTR 50.0%
GTAGATGAGTTGCGTGTTGC+CGG + chr2_4:15750987-15751006 Msa0317780:CDS 50.0%
TAGATGAGTTGCGTGTTGCC+GGG + chr2_4:15750988-15751007 Msa0317780:CDS 50.0%
ACTTCCTCGCCTTCATGCAT+TGG - chr2_4:15751022-15751041 None:intergenic 50.0%
AATGCATGAAGGCGAGGAAG+TGG + chr2_4:15751021-15751040 Msa0317780:CDS 50.0%
ATGCATGAAGGCGAGGAAGT+GGG + chr2_4:15751022-15751041 Msa0317780:CDS 50.0%
TCAAGTGTCTTGGTCCAACG+AGG - chr2_4:15751412-15751431 None:intergenic 50.0%
TCGTTGGACCAAGACACTTG+AGG + chr2_4:15751411-15751430 Msa0317780:CDS 50.0%
! AGGCAGTGGATTTGGCATTG+TGG + chr2_4:15751763-15751782 Msa0317780:intron 50.0%
GCGGGGTTTACGCTTATGTT+TGG + chr2_4:15751850-15751869 Msa0317780:intron 50.0%
TATTAGGCAGAGTCGTCGCA+AGG - chr2_4:15751915-15751934 None:intergenic 50.0%
TGTCCAGTGGTCTTCGAACT+GGG - chr2_4:15752039-15752058 None:intergenic 50.0%
ATGTCCAGTGGTCTTCGAAC+TGG - chr2_4:15752040-15752059 None:intergenic 50.0%
CCAACACGTAACATGTCCAG+TGG - chr2_4:15752052-15752071 None:intergenic 50.0%
CCACTGGACATGTTACGTGT+TGG + chr2_4:15752049-15752068 Msa0317780:CDS 50.0%
ACGTGTTGGACCATAGGAAG+AGG + chr2_4:15752063-15752082 Msa0317780:CDS 50.0%
AAATGCCTCAAGGCAGCGTT+TGG + chr2_4:15752121-15752140 Msa0317780:intron 50.0%
!!! AGTCCGTTTTGAAGGGGTAG+TGG + chr2_4:15752245-15752264 Msa0317780:intron 50.0%
GGGATGGTGAAGCAAAATGG+GGG + chr2_4:15752492-15752511 Msa0317780:CDS 50.0%
!! GGAGGAGTGTGCCGTATTTT+TGG + chr2_4:15752858-15752877 Msa0317780:intron 50.0%
! GGTTCCCAGGAATCTAAGGT+TGG + chr2_4:15752976-15752995 Msa0317780:intron 50.0%
GCAAAACGTGGGTCAAACGT+CGG - chr2_4:15753091-15753110 None:intergenic 50.0%
! GAGAACCTGGTTTGTCTAGC+AGG + chr2_4:15753454-15753473 Msa0317780:intron 50.0%
! ATCCACACCGACTAGAACTC+AGG + chr2_4:15753487-15753506 Msa0317780:intron 50.0%
! TTCCTGAGTTCTAGTCGGTG+TGG - chr2_4:15753492-15753511 None:intergenic 50.0%
! ACACCGACTAGAACTCAGGA+AGG + chr2_4:15753491-15753510 Msa0317780:intron 50.0%
TTCCTGGGAAAGCTAATCCC+AGG + chr2_4:15753679-15753698 Msa0317780:intron 50.0%
!! TACCTGGGATTAGCTTTCCC+AGG - chr2_4:15753684-15753703 None:intergenic 50.0%
CATTCCCGGGACTTAGTTGT+AGG + chr2_4:15753803-15753822 Msa0317780:intron 50.0%
CACTCCTACAACTAAGTCCC+GGG - chr2_4:15753810-15753829 None:intergenic 50.0%
GGGACTTAGTTGTAGGAGTG+TGG + chr2_4:15753810-15753829 Msa0317780:intron 50.0%
AGATGAGTTGCGTGTTGCCG+GGG + chr2_4:15750989-15751008 Msa0317780:CDS 55.0%
!! CCAAGACACTTGAGGCGTTG+CGG + chr2_4:15751419-15751438 Msa0317780:CDS 55.0%
! GTATTAGTTCGGTGGGGGGT+TGG + chr2_4:15751809-15751828 Msa0317780:intron 55.0%
CAGTGGTCTTCGAACTGGGT+TGG - chr2_4:15752035-15752054 None:intergenic 55.0%
CAACCCAGTTCGAAGACCAC+TGG + chr2_4:15752033-15752052 Msa0317780:CDS 55.0%
TGGTTGCCCAGCCGTATTGC+AGG + chr2_4:15749924-15749943 Msa0317780:five_prime_UTR 60.0%
CCGCAACGCCTCAAGTGTCT+TGG - chr2_4:15751422-15751441 None:intergenic 60.0%
!!! GGTGGGGGGTTGGTTTTGTG+TGG + chr2_4:15751819-15751838 Msa0317780:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 15747951 15754412 15747951 ID=Msa0317780;Name=Msa0317780
chr2_4 mRNA 15747951 15754412 15747951 ID=Msa0317780-mRNA-1;Parent=Msa0317780;Name=Msa0317780-mRNA-1;_AED=0.05;_eAED=0.05;_QI=2693|0.81|0.66|1|0.63|0.5|12|241|249
chr2_4 exon 15747951 15749143 15747951 ID=Msa0317780-mRNA-1:exon:5900;Parent=Msa0317780-mRNA-1
chr2_4 exon 15749227 15749945 15749227 ID=Msa0317780-mRNA-1:exon:5901;Parent=Msa0317780-mRNA-1
chr2_4 exon 15750037 15750129 15750037 ID=Msa0317780-mRNA-1:exon:5902;Parent=Msa0317780-mRNA-1
chr2_4 exon 15750160 15750866 15750160 ID=Msa0317780-mRNA-1:exon:5903;Parent=Msa0317780-mRNA-1
chr2_4 exon 15750974 15750981 15750974 ID=Msa0317780-mRNA-1:exon:5904;Parent=Msa0317780-mRNA-1
chr2_4 exon 15750987 15751055 15750987 ID=Msa0317780-mRNA-1:exon:5905;Parent=Msa0317780-mRNA-1
chr2_4 exon 15751149 15751238 15751149 ID=Msa0317780-mRNA-1:exon:5906;Parent=Msa0317780-mRNA-1
chr2_4 exon 15751328 15751453 15751328 ID=Msa0317780-mRNA-1:exon:5907;Parent=Msa0317780-mRNA-1
chr2_4 exon 15752023 15752137 15752023 ID=Msa0317780-mRNA-1:exon:5908;Parent=Msa0317780-mRNA-1
chr2_4 exon 15752247 15752358 15752247 ID=Msa0317780-mRNA-1:exon:5909;Parent=Msa0317780-mRNA-1
chr2_4 exon 15752451 15752541 15752451 ID=Msa0317780-mRNA-1:exon:5910;Parent=Msa0317780-mRNA-1
chr2_4 exon 15754052 15754412 15754052 ID=Msa0317780-mRNA-1:exon:5911;Parent=Msa0317780-mRNA-1
chr2_4 five_prime_UTR 15747951 15749143 15747951 ID=Msa0317780-mRNA-1:five_prime_utr;Parent=Msa0317780-mRNA-1
chr2_4 five_prime_UTR 15749227 15749945 15749227 ID=Msa0317780-mRNA-1:five_prime_utr;Parent=Msa0317780-mRNA-1
chr2_4 five_prime_UTR 15750037 15750129 15750037 ID=Msa0317780-mRNA-1:five_prime_utr;Parent=Msa0317780-mRNA-1
chr2_4 five_prime_UTR 15750160 15750847 15750160 ID=Msa0317780-mRNA-1:five_prime_utr;Parent=Msa0317780-mRNA-1
chr2_4 CDS 15750848 15750866 15750848 ID=Msa0317780-mRNA-1:cds;Parent=Msa0317780-mRNA-1
chr2_4 CDS 15750974 15750981 15750974 ID=Msa0317780-mRNA-1:cds;Parent=Msa0317780-mRNA-1
chr2_4 CDS 15750987 15751055 15750987 ID=Msa0317780-mRNA-1:cds;Parent=Msa0317780-mRNA-1
chr2_4 CDS 15751149 15751238 15751149 ID=Msa0317780-mRNA-1:cds;Parent=Msa0317780-mRNA-1
chr2_4 CDS 15751328 15751453 15751328 ID=Msa0317780-mRNA-1:cds;Parent=Msa0317780-mRNA-1
chr2_4 CDS 15752023 15752137 15752023 ID=Msa0317780-mRNA-1:cds;Parent=Msa0317780-mRNA-1
chr2_4 CDS 15752247 15752358 15752247 ID=Msa0317780-mRNA-1:cds;Parent=Msa0317780-mRNA-1
chr2_4 CDS 15752451 15752541 15752451 ID=Msa0317780-mRNA-1:cds;Parent=Msa0317780-mRNA-1
chr2_4 CDS 15754052 15754171 15754052 ID=Msa0317780-mRNA-1:cds;Parent=Msa0317780-mRNA-1
chr2_4 three_prime_UTR 15754172 15754412 15754172 ID=Msa0317780-mRNA-1:three_prime_utr;Parent=Msa0317780-mRNA-1
Gene Sequence

>Msa0317780

ATGAAAAGGCTAGAGATATTGTGTTATGTAGATGAGTTGCGTGTTGCCGGGGAGTTTTTCCAATGCATGAAGGCGAGGAAGTGGGTGAACTCATATGTTATTAATATTGCTGGCAGGACTATGATGCATGATGAAGTTCGAAAACATGGTTGTGTGAAACGCTTAATTTTGTCAGATTATTTTTCGTTTGAGGTAGTTGATGATTTAAAGGCACATCCTGAAGGACGTAAACTCCAATGGACTGAGCGGAAATTCAAGATGTATATGCCTCGTTGGACCAAGACACTTGAGGCGTTGCGGTCATCTGACTTAGTATTTGCACCAACCCAGTTCGAAGACCACTGGACATGTTACGTGTTGGACCATAGGAAGAGGACAATGTATGTGCTGGACTCGTTATACAGTGAAAGAAATGCCTCAAGGCAGCTCCGTTTTGAAGGGGTAGTGGAATTGATGAATAAAGGAGCGAACAATAAAGGAGATATGTTGGAATCTTCTTTGGAGGTTGTAGTGGTGGATTTACCAAAGCAACAAAATTGTCATGATTGTGGGGTATATGTTCTTAAGTACTTGGAGTTGTGGGATGGTGAAGCAAAATGGGGGCAGAAGAGTATGCCCGACTATTCATTGGAGGATATCCTTCGGATTCGCAGTGAAATTGTTTGTCGTCTGGTGCTTCATGAAGAAAATATCAAGACCAGATTTGTATTAGATACTGCAAAGATACCCGCGGATTTATTGATCGGTTAA
Protein sequence

>Msa0317780

MKRLEILCYVDELRVAGEFFQCMKARKWVNSYVINIAGRTMMHDEVRKHGCVKRLILSDYFSFEVVDDLKAHPEGRKLQWTERKFKMYMPRWTKTLEALRSSDLVFAPTQFEDHWTCYVLDHRKRTMYVLDSLYSERNASRQLRFEGVVELMNKGANNKGDMLESSLEVVVVDLPKQQNCHDCGVYVLKYLELWDGEAKWGQKSMPDYSLEDILRIRSEIVCRLVLHEENIKTRFVLDTAKIPADLLIG*