Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952380 | sp|O65278|ULP1B_ARATH | 24.887 | 221 | 137 | 8 | 477 | 688 | 141 | 341 | 1.38e-12 | 73.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952380 | A0A072TKR8 | 63.250 | 400 | 45 | 4 | 1 | 399 | 1 | 299 | 1.05e-156 | 465 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0210730 | Msa0952380 | 0.914506 | 1.770467e-84 | -8.615850e-47 |
| Msa0317780 | Msa0952380 | 0.905090 | 6.198402e-80 | -8.615850e-47 |
| Msa0342760 | Msa0952380 | 0.913805 | 4.015557e-84 | -8.615850e-47 |
| Msa0352050 | Msa0952380 | 0.851123 | 1.089542e-60 | -8.615850e-47 |
| Msa0878530 | Msa0952380 | 0.803354 | 3.628100e-49 | -8.615850e-47 |
| Msa0900920 | Msa0952380 | 0.906786 | 1.022229e-80 | -8.615850e-47 |
| Msa0952380 | Msa0954640 | 0.929569 | 5.754480e-93 | -8.615850e-47 |
| Msa0952380 | Msa1025910 | 0.866077 | 3.710733e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952380 | MtrunA17_Chr6g0474521 | 69.782 | 321 | 56 | 1 | 42 | 362 | 1 | 280 | 1.48e-152 | 444 |
| Msa0952380 | MtrunA17_Chr1g0162981 | 62.162 | 148 | 52 | 1 | 256 | 399 | 1 | 148 | 2.41e-54 | 184 |
| Msa0952380 | MtrunA17_Chr4g0074621 | 94.505 | 91 | 5 | 0 | 1 | 91 | 1 | 91 | 2.54e-53 | 178 |
| Msa0952380 | MtrunA17_Chr1g0175971 | 94.505 | 91 | 5 | 0 | 1 | 91 | 1 | 91 | 2.54e-53 | 178 |
| Msa0952380 | MtrunA17_Chr8g0337461 | 86.765 | 68 | 9 | 0 | 1 | 68 | 1 | 68 | 1.14e-33 | 123 |
| Msa0952380 | MtrunA17_Chr7g0265121 | 34.426 | 183 | 113 | 2 | 22 | 198 | 9 | 190 | 8.06e-33 | 125 |
| Msa0952380 | MtrunA17_Chr4g0074611 | 34.426 | 183 | 113 | 2 | 22 | 198 | 9 | 190 | 8.06e-33 | 125 |
| Msa0952380 | MtrunA17_Chr4g0012881 | 26.339 | 224 | 147 | 7 | 31 | 246 | 38 | 251 | 6.66e-21 | 97.4 |
| Msa0952380 | MtrunA17_Chr6g0470871 | 53.448 | 58 | 27 | 0 | 23 | 80 | 16 | 73 | 6.47e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952380 | AT4G00690.1 | 24.887 | 221 | 137 | 8 | 477 | 688 | 141 | 341 | 1.41e-13 | 73.2 |
Find 181 sgRNAs with CRISPR-Local
Find 411 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCTCTTAGTACCTATAAT+TGG | 0.159588 | 6_3:+46612400 | Msa0952380:CDS |
| GATACAGTTATACACATTTC+TGG | 0.200591 | 6_3:+46612495 | Msa0952380:CDS |
| CTAGACCTTTGTTTGGCTTT+AGG | 0.220943 | 6_3:+46612132 | Msa0952380:CDS |
| ATGCGTGGAAAACGCTTAAT+TGG | 0.267383 | 6_3:-46612665 | None:intergenic |
| TGAGGTAGTTGATGATTTAA+AGG | 0.268632 | 6_3:+46613921 | Msa0952380:CDS |
| AGATATGTTGGAATCTTCTT+TGG | 0.268674 | 6_3:+46614890 | Msa0952380:CDS |
| TAACCTTCGCATTTGCAAAA+AGG | 0.270102 | 6_3:-46612733 | None:intergenic |
| TGAGGGAAAACAAACGAAAA+AGG | 0.283246 | 6_3:+46611779 | Msa0952380:CDS |
| ACAAAGGTCTAGATGTTTAA+AGG | 0.286497 | 6_3:-46612121 | None:intergenic |
| TATATAGATAAAGGGGTATT+AGG | 0.287945 | 6_3:-46616862 | None:intergenic |
| AGAAATACATATATAGATAA+AGG | 0.290515 | 6_3:-46616871 | None:intergenic |
| TTAATATAACTGTGTGATTT+CGG | 0.290724 | 6_3:-46612345 | None:intergenic |
| GAGGATATTAAAAGCAAATA+AGG | 0.296971 | 6_3:+46613047 | Msa0952380:CDS |
| TGTGGGATGGTGAAGCAAAA+TGG | 0.309075 | 6_3:+46615080 | Msa0952380:CDS |
| CGCTCTTAGTACCTATAATT+GGG | 0.312086 | 6_3:+46612401 | Msa0952380:CDS |
| ATTTACCAAAGCAACAAAAT+TGG | 0.312599 | 6_3:+46614928 | Msa0952380:CDS |
| TTATCGAAGGTCATATATAA+AGG | 0.331004 | 6_3:+46616930 | Msa0952380:three_prime_UTR |
| GCTTTAGGTTTGCCTATTGT+AGG | 0.336005 | 6_3:+46612147 | Msa0952380:CDS |
| GCTTAATTGGACCACTGGTT+AGG | 0.336914 | 6_3:-46612652 | None:intergenic |
| CATTGGAGTTTACGTCCTTC+AGG | 0.346042 | 6_3:-46613949 | None:intergenic |
| CCTTAGGTTATTAATATTGC+TGG | 0.350091 | 6_3:+46613734 | Msa0952380:intron |
| TGGTTGCCCAGCAGTATTGC+AGG | 0.352587 | 6_3:+46612515 | Msa0952380:CDS |
| AACAGCAACACCCCAATTAT+AGG | 0.367016 | 6_3:-46612412 | None:intergenic |
| TCTATATATGTATTTCTTTG+AGG | 0.369379 | 6_3:+46616877 | Msa0952380:three_prime_UTR |
| ATGTCCAGTGGTCTTCGAAC+TGG | 0.369613 | 6_3:-46614628 | None:intergenic |
| AACCATTCTCAAGTTGGTAT+TGG | 0.370824 | 6_3:+46612913 | Msa0952380:CDS |
| ATAAAGGGGTATTAGGATAA+AGG | 0.373190 | 6_3:-46616855 | None:intergenic |
| AATAAAGGAGCGAACAATAA+AGG | 0.374187 | 6_3:+46614867 | Msa0952380:CDS |
| AACACAAAGATTTGCTTTCC+CGG | 0.375365 | 6_3:+46613001 | Msa0952380:CDS |
| GAAATACATATATAGATAAA+GGG | 0.379203 | 6_3:-46616870 | None:intergenic |
| GTAGATGAGTTGCGTGTTGC+CGG | 0.380253 | 6_3:+46613578 | Msa0952380:CDS |
| GTTTACCGGAAACTAGTGAT+AGG | 0.386283 | 6_3:+46612175 | Msa0952380:CDS |
| CTACGTTGTCCCCTTCTTGA+AGG | 0.389579 | 6_3:-46612272 | None:intergenic |
| TGCAGTATCTAATACAAATC+TGG | 0.391438 | 6_3:-46616709 | None:intergenic |
| CTTCCTACTTCCATGCTACT+TGG | 0.397148 | 6_3:-46613096 | None:intergenic |
| TGATTAGTTGGTTGAGGACT+TGG | 0.400972 | 6_3:+46612843 | Msa0952380:intron |
| GTGGGATGGTGAAGCAAAAT+GGG | 0.404332 | 6_3:+46615081 | Msa0952380:CDS |
| GTGGATATGAAGACCTATAT+AGG | 0.406234 | 6_3:+46612015 | Msa0952380:CDS |
| AAATGCCTCAAGGCAGCGTT+TGG | 0.407622 | 6_3:+46614712 | Msa0952380:CDS |
| GTAGTGGAATTGATGAATAA+AGG | 0.409455 | 6_3:+46614852 | Msa0952380:CDS |
| TTTGTCTAACTTGATTGTGC+TGG | 0.411331 | 6_3:+46616769 | Msa0952380:three_prime_UTR |
| CTAACCCTATCACTAGTTTC+CGG | 0.415358 | 6_3:-46612180 | None:intergenic |
| CAGTGAAATTGTTTGTCGTC+TGG | 0.416799 | 6_3:+46616662 | Msa0952380:CDS |
| AGTACCATTCATTCCTATAT+AGG | 0.420459 | 6_3:-46612028 | None:intergenic |
| TAAACATCTAGACCTTTGTT+TGG | 0.421249 | 6_3:+46612125 | Msa0952380:CDS |
| TTCAATACCTGCAATACTGC+TGG | 0.429612 | 6_3:-46612522 | None:intergenic |
| ACTTCCTCGCCTTCATGCAT+TGG | 0.432506 | 6_3:-46613610 | None:intergenic |
| GGAGTTGGATGATGATGATA+TGG | 0.432653 | 6_3:+46613347 | Msa0952380:CDS |
| TGATGATGATATGGCTGAAA+AGG | 0.433309 | 6_3:+46613356 | Msa0952380:CDS |
| TTTATTCTGCACACATGAAA+AGG | 0.433361 | 6_3:+46613425 | Msa0952380:CDS |
| CTTAATTGGACCACTGGTTA+GGG | 0.433873 | 6_3:-46612651 | None:intergenic |
| AGCAAATAAGGTTGATGGTA+GGG | 0.436321 | 6_3:+46613059 | Msa0952380:CDS |
| AATGAATGGTACTTTATTGA+AGG | 0.438781 | 6_3:+46612038 | Msa0952380:CDS |
| GGTATATGTTCTTAAGTACT+TGG | 0.444660 | 6_3:+46615054 | Msa0952380:CDS |
| TATGTTGGAATCTTCTTTGG+AGG | 0.445095 | 6_3:+46614893 | Msa0952380:CDS |
| TCTTCATATCCACAAGATAT+CGG | 0.446334 | 6_3:-46612005 | None:intergenic |
| TTAAAAGCAAATAAGGTTGA+TGG | 0.448682 | 6_3:+46613054 | Msa0952380:CDS |
| TTGGAAGAAGAAAATGATGA+TGG | 0.450909 | 6_3:+46613255 | Msa0952380:CDS |
| TTTGCGCATCAGACAATGTT+CGG | 0.454164 | 6_3:-46611957 | None:intergenic |
| GGTAAACACTCTCCTACAAT+AGG | 0.455224 | 6_3:-46612159 | None:intergenic |
| TGAATTTCCGCTCAGTCCAT+TGG | 0.455335 | 6_3:-46613966 | None:intergenic |
| TTCTTAAGTACTTGGAGTTG+TGG | 0.459941 | 6_3:+46615062 | Msa0952380:CDS |
| AAGATTGATGCGGATAATGA+TGG | 0.460099 | 6_3:+46613150 | Msa0952380:CDS |
| TAGATGAGTTGCGTGTTGCC+GGG | 0.464352 | 6_3:+46613579 | Msa0952380:CDS |
| TTAATGTGATTAGTTGGTTG+AGG | 0.466558 | 6_3:+46612837 | Msa0952380:intron |
| TATCTACCAACTTATTAGTA+CGG | 0.467587 | 6_3:-46611930 | None:intergenic |
| ATCTACCAACTTATTAGTAC+GGG | 0.467987 | 6_3:-46611929 | None:intergenic |
| AGGTGGGATGCAAGTAGCTT+GGG | 0.470670 | 6_3:+46612072 | Msa0952380:CDS |
| TGGGATTTAGAGTAGGCGTT+AGG | 0.472541 | 6_3:+46612091 | Msa0952380:CDS |
| TCTTAAGTACTTGGAGTTGT+GGG | 0.482984 | 6_3:+46615063 | Msa0952380:CDS |
| TAATATTCGTTGGTGTATCA+TGG | 0.485490 | 6_3:+46616822 | Msa0952380:three_prime_UTR |
| CATGTTACGTGTTGGACCAT+AGG | 0.488808 | 6_3:+46614648 | Msa0952380:CDS |
| TATTGTAGGAGAGTGTTTAC+CGG | 0.495009 | 6_3:+46612161 | Msa0952380:CDS |
| CATACATTGTCCTCTTCCTA+TGG | 0.495966 | 6_3:-46614664 | None:intergenic |
| AGAAAATGATGGGATGAAGT+TGG | 0.497063 | 6_3:+46613200 | Msa0952380:CDS |
| TGAAGGAATTATTGCATAGG+TGG | 0.500937 | 6_3:+46612055 | Msa0952380:CDS |
| ACCAACTTGAGAATGGTTAA+CGG | 0.500987 | 6_3:-46612908 | None:intergenic |
| AACATGACCTCCATCCACTT+TGG | 0.501951 | 6_3:-46612699 | None:intergenic |
| AAGCTGAAGGTCCTTCAAGA+AGG | 0.502318 | 6_3:+46612261 | Msa0952380:CDS |
| ATCCTCAAGGATTGAAACCC+GGG | 0.502408 | 6_3:-46613019 | None:intergenic |
| TAAAGACAATGGGATGGAGT+TGG | 0.505100 | 6_3:+46613332 | Msa0952380:CDS |
| CTCCAATACCAACTTGAGAA+TGG | 0.505693 | 6_3:-46612915 | None:intergenic |
| AGCATTACCAATGAATAGTC+GGG | 0.509033 | 6_3:-46615118 | None:intergenic |
| ATGGAAGAAGATAAAGACAA+TGG | 0.509362 | 6_3:+46613321 | Msa0952380:CDS |
| TAGGTGGGATGCAAGTAGCT+TGG | 0.510938 | 6_3:+46612071 | Msa0952380:CDS |
| AAGCATTACCAATGAATAGT+CGG | 0.511109 | 6_3:-46615119 | None:intergenic |
| AAGACCTATATAGGAATGAA+TGG | 0.515117 | 6_3:+46612024 | Msa0952380:CDS |
| TGGAAGAAGATAAAGACAAT+GGG | 0.520727 | 6_3:+46613322 | Msa0952380:CDS |
| GCCGTTAACCATTCTCAAGT+TGG | 0.520859 | 6_3:+46612907 | Msa0952380:CDS |
| AAGCAAATAAGGTTGATGGT+AGG | 0.523460 | 6_3:+46613058 | Msa0952380:CDS |
| AGGTTATTAATATTGCTGGC+AGG | 0.523648 | 6_3:+46613738 | Msa0952380:intron |
| ACTTACAGGAGGATATCCTT+CGG | 0.524242 | 6_3:+46616634 | Msa0952380:intron |
| AACTCCGTTCCGATATCTTG+TGG | 0.528157 | 6_3:+46611996 | Msa0952380:CDS |
| GGAAAAGCAGAAGAAAATGA+TGG | 0.528960 | 6_3:+46613189 | Msa0952380:CDS |
| AATGCCCCGTACTAATAAGT+TGG | 0.529713 | 6_3:+46611924 | Msa0952380:CDS |
| GATGGGTTGAAAAGTGAGGC+GGG | 0.530008 | 6_3:+46613168 | Msa0952380:CDS |
| CCGCAACGCCTCAAGTGTCT+TGG | 0.532629 | 6_3:-46614010 | None:intergenic |
| AATGCATGAAGGCGAGGAAG+TGG | 0.532769 | 6_3:+46613612 | Msa0952380:CDS |
| ATACCCGCGGATTTATTGAT+CGG | 0.534688 | 6_3:+46616735 | Msa0952380:CDS |
| AAAACGCTTAATTGGACCAC+TGG | 0.534869 | 6_3:-46612657 | None:intergenic |
| GAGTATGCCCGACTATTCAT+TGG | 0.535075 | 6_3:+46615111 | Msa0952380:CDS |
| TTCTTTGGAGGTTGTAGCGG+TGG | 0.538058 | 6_3:+46614905 | Msa0952380:CDS |
| AGCTGAAGGTCCTTCAAGAA+GGG | 0.538805 | 6_3:+46612262 | Msa0952380:CDS |
| ATCTTCTTTGGAGGTTGTAG+CGG | 0.546883 | 6_3:+46614902 | Msa0952380:CDS |
| GAACAATAAAGGAGATATGT+TGG | 0.549679 | 6_3:+46614878 | Msa0952380:CDS |
| CAATCCTTGAGGATGATATG+AGG | 0.550170 | 6_3:+46613028 | Msa0952380:CDS |
| CTTATATGGCTGAACATCAA+AGG | 0.550916 | 6_3:+46612968 | Msa0952380:CDS |
| TGTCCAGTGGTCTTCGAACT+GGG | 0.551007 | 6_3:-46614627 | None:intergenic |
| GGCATTTGAGTCTTTATCTG+TGG | 0.552622 | 6_3:-46611907 | None:intergenic |
| AGTAGCATGGAAGTAGGAAG+TGG | 0.553313 | 6_3:+46613099 | Msa0952380:CDS |
| ACACAAAGATTTGCTTTCCC+GGG | 0.556553 | 6_3:+46613002 | Msa0952380:CDS |
| TTTACCGGAAACTAGTGATA+GGG | 0.559975 | 6_3:+46612176 | Msa0952380:CDS |
| GAAGGAATTATTGCATAGGT+GGG | 0.560436 | 6_3:+46612056 | Msa0952380:CDS |
| TCAAGATATATATGCCTCGT+TGG | 0.560933 | 6_3:+46613986 | Msa0952380:CDS |
| TATTCCGATGCCAAGTAGCA+TGG | 0.561626 | 6_3:+46613086 | Msa0952380:CDS |
| TTCCCGGGTTTCAATCCTTG+AGG | 0.561883 | 6_3:+46613017 | Msa0952380:CDS |
| GAAGAGGACAATGTATGTGT+TGG | 0.563430 | 6_3:+46614670 | Msa0952380:CDS |
| CATCCTCAAGGATTGAAACC+CGG | 0.563868 | 6_3:-46613020 | None:intergenic |
| AGAAAATGATGATGGGATGA+AGG | 0.570797 | 6_3:+46613263 | Msa0952380:CDS |
| ATTCCACTACCCCTTCAAAA+CGG | 0.572945 | 6_3:-46614839 | None:intergenic |
| CAACCCAGTTCGAAGACCAC+TGG | 0.574509 | 6_3:+46614624 | Msa0952380:CDS |
| CATGATGAAGTTCGAAAACA+TGG | 0.575114 | 6_3:+46613770 | Msa0952380:CDS |
| AAATACATATATAGATAAAG+GGG | 0.575274 | 6_3:-46616869 | None:intergenic |
| ATATCCTCATATCATCCTCA+AGG | 0.575345 | 6_3:-46613032 | None:intergenic |
| TATGGCTGAACATCAAAGGT+TGG | 0.580692 | 6_3:+46612972 | Msa0952380:CDS |
| TCAATACCTGCAATACTGCT+GGG | 0.583740 | 6_3:-46612521 | None:intergenic |
| AGATGAGTTGCGTGTTGCCG+GGG | 0.584197 | 6_3:+46613580 | Msa0952380:CDS |
| AGTAGCTTGGGATTTAGAGT+AGG | 0.584499 | 6_3:+46612084 | Msa0952380:CDS |
| TTGGTCCAATTGTTAATGCG+TGG | 0.585880 | 6_3:-46612680 | None:intergenic |
| ACTTCCATGCTACTTGGCAT+CGG | 0.586687 | 6_3:-46613090 | None:intergenic |
| AGAAGATAAAGACAATGGGA+TGG | 0.587623 | 6_3:+46613326 | Msa0952380:CDS |
| TATTGAAGGAATTATTGCAT+AGG | 0.587809 | 6_3:+46612052 | Msa0952380:CDS |
| CTGAAGGACGTAAACTCCAA+TGG | 0.587862 | 6_3:+46613950 | Msa0952380:CDS |
| AATTGAAAATCTTAGTAGTG+CGG | 0.588744 | 6_3:+46612446 | Msa0952380:CDS |
| GAAGGTTGATGATGAAGATG+TGG | 0.591676 | 6_3:+46613281 | Msa0952380:CDS |
| TAGTGTACATTCTAAGCTGA+AGG | 0.592478 | 6_3:+46612248 | Msa0952380:CDS |
| AACAATTGGACCAAAGTGGA+TGG | 0.592872 | 6_3:+46612689 | Msa0952380:CDS |
| GAAAAGCAGAAGAAAATGAT+GGG | 0.594943 | 6_3:+46613190 | Msa0952380:CDS |
| CAGTGGTCTTCGAACTGGGT+TGG | 0.595890 | 6_3:-46614623 | None:intergenic |
| ATGCATGAAGGCGAGGAAGT+GGG | 0.596800 | 6_3:+46613613 | Msa0952380:CDS |
| TAACCGATCAATAAATCCGC+GGG | 0.596912 | 6_3:-46616738 | None:intergenic |
| GATTTAAAGGCACATCCTGA+AGG | 0.597377 | 6_3:+46613934 | Msa0952380:CDS |
| CATTAACAATTGGACCAAAG+TGG | 0.599981 | 6_3:+46612685 | Msa0952380:CDS |
| TGATGAAGATGTTGGTGAAG+AGG | 0.600999 | 6_3:+46613224 | Msa0952380:CDS |
| CCACTGGACATGTTACGTGT+TGG | 0.601741 | 6_3:+46614640 | Msa0952380:CDS |
| ACGTGTTGGACCATAGGAAG+AGG | 0.602868 | 6_3:+46614654 | Msa0952380:CDS |
| TAGAGTAGGCGTTAGGACTG+TGG | 0.605350 | 6_3:+46612098 | Msa0952380:CDS |
| ATGCCAAGTAGCATGGAAGT+AGG | 0.607349 | 6_3:+46613093 | Msa0952380:CDS |
| GGAAGTGGGTCAAAACATGT+AGG | 0.610645 | 6_3:+46613114 | Msa0952380:CDS |
| TGGAAGAAGAAAATGATGAT+GGG | 0.616216 | 6_3:+46613256 | Msa0952380:CDS |
| CCAAGACACTTGAGGCGTTG+CGG | 0.618422 | 6_3:+46614010 | Msa0952380:CDS |
| GGTTCCAACACAACAAGACA+TGG | 0.619501 | 6_3:+46612864 | Msa0952380:CDS |
| TGGGATGGTGAAGCAAAATG+GGG | 0.623459 | 6_3:+46615082 | Msa0952380:CDS |
| TGATGGGTTGAAAAGTGAGG+CGG | 0.624829 | 6_3:+46613167 | Msa0952380:CDS |
| GCAGCGTTTGGATAATGCAA+TGG | 0.628794 | 6_3:+46614724 | Msa0952380:CDS |
| GTCATTTGATTAGATATGGG+CGG | 0.632926 | 6_3:+46612616 | Msa0952380:intron |
| CAATTTCACTGCGAATCCGA+AGG | 0.633824 | 6_3:-46616650 | None:intergenic |
| GCTGAAGGTCCTTCAAGAAG+GGG | 0.635073 | 6_3:+46612263 | Msa0952380:CDS |
| AAGTACTTGGAGTTGTGGGA+TGG | 0.635913 | 6_3:+46615067 | Msa0952380:CDS |
| AAGGTTGATGATGAAGATGT+GGG | 0.641554 | 6_3:+46613282 | Msa0952380:CDS |
| AAGTTGGATGATGAAGATGT+TGG | 0.645218 | 6_3:+46613216 | Msa0952380:CDS |
| ATTATCCAAACGCTGCCTTG+AGG | 0.647660 | 6_3:-46614717 | None:intergenic |
| CGGAAAATATAACACACACA+AGG | 0.655010 | 6_3:-46612325 | None:intergenic |
| ACAGTGAAAGAAATGCCTCA+AGG | 0.655287 | 6_3:+46614702 | Msa0952380:CDS |
| AGATTGATGCGGATAATGAT+GGG | 0.662184 | 6_3:+46613151 | Msa0952380:CDS |
| TAATGATGGGTTGAAAAGTG+AGG | 0.663934 | 6_3:+46613164 | Msa0952380:CDS |
| AATTGGACCAAAGTGGATGG+AGG | 0.668982 | 6_3:+46612692 | Msa0952380:CDS |
| GCAAACCTAAAGCCAAACAA+AGG | 0.673782 | 6_3:-46612137 | None:intergenic |
| GTAGCATGGAAGTAGGAAGT+GGG | 0.674257 | 6_3:+46613100 | Msa0952380:CDS |
| TCGTTGGACCAAGACACTTG+AGG | 0.677045 | 6_3:+46614002 | Msa0952380:CDS |
| GAACATTTATCCCTAACCAG+TGG | 0.678694 | 6_3:+46612641 | Msa0952380:CDS |
| GCTCTTAGTACCTATAATTG+GGG | 0.679670 | 6_3:+46612402 | Msa0952380:CDS |
| TTAACCGATCAATAAATCCG+CGG | 0.698985 | 6_3:-46616739 | None:intergenic |
| ATATCCACAAGATATCGGAA+CGG | 0.702922 | 6_3:-46612000 | None:intergenic |
| CCAACACGTAACATGTCCAG+TGG | 0.705795 | 6_3:-46614640 | None:intergenic |
| GTAAACTCCAATGGACTGAG+CGG | 0.711805 | 6_3:+46613959 | Msa0952380:CDS |
| TCAAGTGTCTTGGTCCAACG+AGG | 0.711931 | 6_3:-46614000 | None:intergenic |
| AGATACTGCAAAGATACCCG+CGG | 0.714457 | 6_3:+46616722 | Msa0952380:CDS |
| GGGATGGTGAAGCAAAATGG+GGG | 0.720669 | 6_3:+46615083 | Msa0952380:CDS |
| AAAGTGTAGTAAGATTGATG+CGG | 0.726301 | 6_3:+46613140 | Msa0952380:CDS |
| TCTACCAACTTATTAGTACG+GGG | 0.745691 | 6_3:-46611928 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTAAATTAAAACAAAAA+AGG | - | chr6_3:46613668-46613687 | None:intergenic | 10.0% |
| !! | TATTTAATCGTAAAATAAAT+TGG | - | chr6_3:46615378-46615397 | None:intergenic | 10.0% |
| !!! | TTTTTCATTTAAAAAAATTG+AGG | - | chr6_3:46615875-46615894 | None:intergenic | 10.0% |
| !!! | TTTTATTTTTTTAAAGTGTT+TGG | + | chr6_3:46616357-46616376 | Msa0952380:intron | 10.0% |
| !! | TACTAAATACTAATATATTA+TGG | + | chr6_3:46616573-46616592 | Msa0952380:intron | 10.0% |
| !! | ACTAAATACTAATATATTAT+GGG | + | chr6_3:46616574-46616593 | Msa0952380:intron | 10.0% |
| !! | ATTAAAACAAAAAAGGTTAA+CGG | - | chr6_3:46613661-46613680 | None:intergenic | 15.0% |
| !! | ACATAAATAAAAGTAAGTAA+TGG | - | chr6_3:46613710-46613729 | None:intergenic | 15.0% |
| !!! | AATTTTGTCAGATTATTTTT+CGG | + | chr6_3:46613808-46613827 | Msa0952380:CDS | 15.0% |
| !!! | AACTCTTAAATAAATTGTTT+TGG | + | chr6_3:46614754-46614773 | Msa0952380:intron | 15.0% |
| !! | CTAAATACTAATATATTATG+GGG | + | chr6_3:46616575-46616594 | Msa0952380:intron | 15.0% |
| !! | AAATACATATATAGATAAAG+GGG | - | chr6_3:46616872-46616891 | None:intergenic | 15.0% |
| !! | GAAATACATATATAGATAAA+GGG | - | chr6_3:46616873-46616892 | None:intergenic | 15.0% |
| !! | AGAAATACATATATAGATAA+AGG | - | chr6_3:46616874-46616893 | None:intergenic | 15.0% |
| !! | TTAATATAACTGTGTGATTT+CGG | - | chr6_3:46612348-46612367 | None:intergenic | 20.0% |
| !!! | ATTTGTCATTTGATTAGATA+TGG | + | chr6_3:46612612-46612631 | Msa0952380:intron | 20.0% |
| !!! | TTTGTCATTTGATTAGATAT+GGG | + | chr6_3:46612613-46612632 | Msa0952380:intron | 20.0% |
| !! | TTGCCTTTAGTATATTAAAT+CGG | + | chr6_3:46612760-46612779 | Msa0952380:intron | 20.0% |
| !!! | TTACCGATTTAATATACTAA+AGG | - | chr6_3:46612766-46612785 | None:intergenic | 20.0% |
| !! | TAGTATATTAAATCGGTAAA+TGG | + | chr6_3:46612767-46612786 | Msa0952380:intron | 20.0% |
| !! | AGTATATTAAATCGGTAAAT+GGG | + | chr6_3:46612768-46612787 | Msa0952380:intron | 20.0% |
| !!! | TTTTATTTATGTATTGCCTT+AGG | + | chr6_3:46613718-46613737 | Msa0952380:intron | 20.0% |
| !! | TTATAATTAATGTTAGGCAT+GGG | - | chr6_3:46613893-46613912 | None:intergenic | 20.0% |
| !! | ATTATAATTAATGTTAGGCA+TGG | - | chr6_3:46613894-46613913 | None:intergenic | 20.0% |
| !! | CTGCAATTATAATTAATGTT+AGG | - | chr6_3:46613899-46613918 | None:intergenic | 20.0% |
| !! | TTAATTATAATTGCAGTTTG+AGG | + | chr6_3:46613903-46613922 | Msa0952380:intron | 20.0% |
| !! | TCATTGACATCAAATTTATT+AGG | - | chr6_3:46614522-46614541 | None:intergenic | 20.0% |
| !! | TTGATATATTACTTGTGTAT+AGG | + | chr6_3:46614982-46615001 | Msa0952380:intron | 20.0% |
| !! | TGATATATTACTTGTGTATA+GGG | + | chr6_3:46614983-46615002 | Msa0952380:intron | 20.0% |
| !! | AATAACTCACTAGAATATAT+GGG | + | chr6_3:46615518-46615537 | Msa0952380:intron | 20.0% |
| !! | TTGTTTGAGGAAAATAAAAA+TGG | + | chr6_3:46615546-46615565 | Msa0952380:intron | 20.0% |
| !! | TATTTGACAGGAATAAAAAT+GGG | - | chr6_3:46615704-46615723 | None:intergenic | 20.0% |
| !! | TTCAACAATCAATTTCATAT+AGG | - | chr6_3:46615800-46615819 | None:intergenic | 20.0% |
| !!! | CAAGAATTATTTTCTTTTGT+CGG | + | chr6_3:46615914-46615933 | Msa0952380:intron | 20.0% |
| !!! | ATGATTTTATTTTCAAACGA+GGG | - | chr6_3:46616483-46616502 | None:intergenic | 20.0% |
| !! | TCGTTTGAAAATAAAATCAT+GGG | + | chr6_3:46616483-46616502 | Msa0952380:intron | 20.0% |
| !! | TCTATATATGTATTTCTTTG+AGG | + | chr6_3:46616877-46616896 | Msa0952380:three_prime_UTR | 20.0% |
| !! | TTCGATAACAAAACAAAAAA+AGG | - | chr6_3:46616918-46616937 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTTTTGTTATCGA+AGG | + | chr6_3:46616917-46616936 | Msa0952380:three_prime_UTR | 20.0% |
| ! | CAACAGTATTCATTCATTAA+TGG | - | chr6_3:46611878-46611897 | None:intergenic | 25.0% |
| ! | TATCTACCAACTTATTAGTA+CGG | - | chr6_3:46611933-46611952 | None:intergenic | 25.0% |
| ! | AATGAATGGTACTTTATTGA+AGG | + | chr6_3:46612038-46612057 | Msa0952380:CDS | 25.0% |
| ! | TATTGAAGGAATTATTGCAT+AGG | + | chr6_3:46612052-46612071 | Msa0952380:CDS | 25.0% |
| ! | AATTGAAAATCTTAGTAGTG+CGG | + | chr6_3:46612446-46612465 | Msa0952380:CDS | 25.0% |
| !!! | TGCAGGTATTGAATATTAAA+TGG | + | chr6_3:46612532-46612551 | Msa0952380:intron | 25.0% |
| !!! | GCAGGTATTGAATATTAAAT+GGG | + | chr6_3:46612533-46612552 | Msa0952380:intron | 25.0% |
| ! | ACCTATTTAATGTGATTAGT+TGG | + | chr6_3:46612831-46612850 | Msa0952380:intron | 25.0% |
| ! | ACCAACTAATCACATTAAAT+AGG | - | chr6_3:46612835-46612854 | None:intergenic | 25.0% |
| ! | GAGGATATTAAAAGCAAATA+AGG | + | chr6_3:46613047-46613066 | Msa0952380:CDS | 25.0% |
| ! | TTAAAAGCAAATAAGGTTGA+TGG | + | chr6_3:46613054-46613073 | Msa0952380:CDS | 25.0% |
| !!! | TTTTTTTAGTGTGTTATGTG+AGG | + | chr6_3:46613556-46613575 | Msa0952380:intron | 25.0% |
| ! | ATACTCTAATGAAAGAAAAC+AGG | - | chr6_3:46614191-46614210 | None:intergenic | 25.0% |
| ! | ATATTTGAATTGACAGAACA+AGG | + | chr6_3:46614235-46614254 | Msa0952380:intron | 25.0% |
| ! | TCAAATATAGAGAATAATGC+TGG | + | chr6_3:46614310-46614329 | Msa0952380:intron | 25.0% |
| ! | AAACAAAACTCGCAAAATTA+GGG | - | chr6_3:46614480-46614499 | None:intergenic | 25.0% |
| ! | AAAACAAAACTCGCAAAATT+AGG | - | chr6_3:46614481-46614500 | None:intergenic | 25.0% |
| ! | ATTTACCAAAGCAACAAAAT+TGG | + | chr6_3:46614928-46614947 | Msa0952380:CDS | 25.0% |
| !! | GCTTTCAGTTTTCAATATAT+TGG | - | chr6_3:46615309-46615328 | None:intergenic | 25.0% |
| ! | AATTAGAATTGTTAAGACTC+AGG | + | chr6_3:46615329-46615348 | Msa0952380:intron | 25.0% |
| !!! | CTATTGTTTGAGTTTTTAAC+TGG | + | chr6_3:46615428-46615447 | Msa0952380:intron | 25.0% |
| ! | CCCTTATAATTCCAAAAATA+CGG | - | chr6_3:46615463-46615482 | None:intergenic | 25.0% |
| !!! | CCGTATTTTTGGAATTATAA+GGG | + | chr6_3:46615460-46615479 | Msa0952380:intron | 25.0% |
| !!! | CGTATTTTTGGAATTATAAG+GGG | + | chr6_3:46615461-46615480 | Msa0952380:intron | 25.0% |
| !!! | ATGTTATGTTAATTTGTTCC+CGG | + | chr6_3:46615494-46615513 | Msa0952380:intron | 25.0% |
| ! | GAATAACTCACTAGAATATA+TGG | + | chr6_3:46615517-46615536 | Msa0952380:intron | 25.0% |
| ! | GGAACAAAAAAAATATGCAT+AGG | + | chr6_3:46615618-46615637 | Msa0952380:intron | 25.0% |
| !!! | ACTGTCATTATTTTTTTCCT+GGG | - | chr6_3:46615655-46615674 | None:intergenic | 25.0% |
| !!! | AACTGTCATTATTTTTTTCC+TGG | - | chr6_3:46615656-46615675 | None:intergenic | 25.0% |
| ! | CTATTTGACAGGAATAAAAA+TGG | - | chr6_3:46615705-46615724 | None:intergenic | 25.0% |
| !! | CATTTTTATTCCTGTCAAAT+AGG | + | chr6_3:46615703-46615722 | Msa0952380:intron | 25.0% |
| !! | ATTTTCACAGAAATTTACCT+GGG | - | chr6_3:46615745-46615764 | None:intergenic | 25.0% |
| ! | AACAATCAATTTCATATAGG+AGG | - | chr6_3:46615797-46615816 | None:intergenic | 25.0% |
| ! | CATGTGATATCAATATTTCT+TGG | + | chr6_3:46615825-46615844 | Msa0952380:intron | 25.0% |
| !! | GATAATTTTCTTTGTTCCAT+TGG | + | chr6_3:46615938-46615957 | Msa0952380:intron | 25.0% |
| !!! | TAATTCCTGGGAATTTTTTA+TGG | - | chr6_3:46616190-46616209 | None:intergenic | 25.0% |
| ! | TGTTCAATAGTATAATTCCT+GGG | - | chr6_3:46616202-46616221 | None:intergenic | 25.0% |
| ! | TTGTTCAATAGTATAATTCC+TGG | - | chr6_3:46616203-46616222 | None:intergenic | 25.0% |
| ! | ATTCCAACATTTATATTCCT+GGG | + | chr6_3:46616254-46616273 | Msa0952380:intron | 25.0% |
| ! | TAAAATTGAAACCCAAGAAT+AGG | - | chr6_3:46616342-46616361 | None:intergenic | 25.0% |
| !!! | CATGATTTTATTTTCAAACG+AGG | - | chr6_3:46616484-46616503 | None:intergenic | 25.0% |
| ! | CTCGTTTGAAAATAAAATCA+TGG | + | chr6_3:46616482-46616501 | Msa0952380:intron | 25.0% |
| !!! | TATATAGATAAAGGGGTATT+AGG | - | chr6_3:46616865-46616884 | None:intergenic | 25.0% |
| ! | TTATCGAAGGTCATATATAA+AGG | + | chr6_3:46616930-46616949 | Msa0952380:three_prime_UTR | 25.0% |
| ATCTACCAACTTATTAGTAC+GGG | - | chr6_3:46611932-46611951 | None:intergenic | 30.0% | |
| TCTTCATATCCACAAGATAT+CGG | - | chr6_3:46612008-46612027 | None:intergenic | 30.0% | |
| AAGACCTATATAGGAATGAA+TGG | + | chr6_3:46612024-46612043 | Msa0952380:CDS | 30.0% | |
| AGTACCATTCATTCCTATAT+AGG | - | chr6_3:46612031-46612050 | None:intergenic | 30.0% | |
| ACAAAGGTCTAGATGTTTAA+AGG | - | chr6_3:46612124-46612143 | None:intergenic | 30.0% | |
| TAAACATCTAGACCTTTGTT+TGG | + | chr6_3:46612125-46612144 | Msa0952380:CDS | 30.0% | |
| ! | CTGTATCATTCTTTTGTTGA+TGG | - | chr6_3:46612482-46612501 | None:intergenic | 30.0% |
| GATACAGTTATACACATTTC+TGG | + | chr6_3:46612495-46612514 | Msa0952380:CDS | 30.0% | |
| ! | TTAATGTGATTAGTTGGTTG+AGG | + | chr6_3:46612837-46612856 | Msa0952380:intron | 30.0% |
| AAGCTTGCACATCAAAAAAA+GGG | - | chr6_3:46612951-46612970 | None:intergenic | 30.0% | |
| TAAGCTTGCACATCAAAAAA+AGG | - | chr6_3:46612952-46612971 | None:intergenic | 30.0% | |
| ! | TTTTGATGTGCAAGCTTATA+TGG | + | chr6_3:46612954-46612973 | Msa0952380:CDS | 30.0% |
| AAAGTGTAGTAAGATTGATG+CGG | + | chr6_3:46613140-46613159 | Msa0952380:CDS | 30.0% | |
| GAAAAGCAGAAGAAAATGAT+GGG | + | chr6_3:46613190-46613209 | Msa0952380:CDS | 30.0% | |
| TGGTGAAGAGGAAAAAAAAT+TGG | + | chr6_3:46613236-46613255 | Msa0952380:CDS | 30.0% | |
| TTGGAAGAAGAAAATGATGA+TGG | + | chr6_3:46613255-46613274 | Msa0952380:CDS | 30.0% | |
| TGGAAGAAGAAAATGATGAT+GGG | + | chr6_3:46613256-46613275 | Msa0952380:CDS | 30.0% | |
| GGGTGAAGAAGAAAAAAAAA+TGG | + | chr6_3:46613302-46613321 | Msa0952380:CDS | 30.0% | |
| ATGGAAGAAGATAAAGACAA+TGG | + | chr6_3:46613321-46613340 | Msa0952380:CDS | 30.0% | |
| TGGAAGAAGATAAAGACAAT+GGG | + | chr6_3:46613322-46613341 | Msa0952380:CDS | 30.0% | |
| TGGCTGAAAAGGAAAAAAAA+AGG | + | chr6_3:46613367-46613386 | Msa0952380:CDS | 30.0% | |
| TTTATTCTGCACACATGAAA+AGG | + | chr6_3:46613425-46613444 | Msa0952380:CDS | 30.0% | |
| !!! | AACTACATTTTTTCATGTCG+CGG | + | chr6_3:46613487-46613506 | Msa0952380:intron | 30.0% |
| CCAGCAATATTAATAACCTA+AGG | - | chr6_3:46613737-46613756 | None:intergenic | 30.0% | |
| CCTTAGGTTATTAATATTGC+TGG | + | chr6_3:46613734-46613753 | Msa0952380:intron | 30.0% | |
| !! | TGTCAGATTATTTTTCGGTA+CGG | + | chr6_3:46613813-46613832 | Msa0952380:intron | 30.0% |
| TAAAGGTTGAATACACATCA+CGG | - | chr6_3:46613866-46613885 | None:intergenic | 30.0% | |
| !! | TGAGGTAGTTGATGATTTAA+AGG | + | chr6_3:46613921-46613940 | Msa0952380:CDS | 30.0% |
| AGTCATCATTATGATGTTGT+AGG | + | chr6_3:46614067-46614086 | Msa0952380:intron | 30.0% | |
| !!! | AGGAGTTTGCTGATTTATTT+TGG | + | chr6_3:46614255-46614274 | Msa0952380:intron | 30.0% |
| !!! | CATTGTGGTTTTGTCTATAT+GGG | + | chr6_3:46614369-46614388 | Msa0952380:intron | 30.0% |
| AACAAAACTCGCAAAATTAG+GGG | - | chr6_3:46614479-46614498 | None:intergenic | 30.0% | |
| ! | GTAGTGGAATTGATGAATAA+AGG | + | chr6_3:46614852-46614871 | Msa0952380:CDS | 30.0% |
| AATAAAGGAGCGAACAATAA+AGG | + | chr6_3:46614867-46614886 | Msa0952380:CDS | 30.0% | |
| GAACAATAAAGGAGATATGT+TGG | + | chr6_3:46614878-46614897 | Msa0952380:CDS | 30.0% | |
| AGATATGTTGGAATCTTCTT+TGG | + | chr6_3:46614890-46614909 | Msa0952380:CDS | 30.0% | |
| !! | ACTAACCAATTTTGTTGCTT+TGG | - | chr6_3:46614936-46614955 | None:intergenic | 30.0% |
| ! | AAATTTTGCAGTCATGATTG+TGG | + | chr6_3:46615031-46615050 | Msa0952380:intron | 30.0% |
| ! | AATTTTGCAGTCATGATTGT+GGG | + | chr6_3:46615032-46615051 | Msa0952380:intron | 30.0% |
| GGTATATGTTCTTAAGTACT+TGG | + | chr6_3:46615054-46615073 | Msa0952380:CDS | 30.0% | |
| AAGCATTACCAATGAATAGT+CGG | - | chr6_3:46615122-46615141 | None:intergenic | 30.0% | |
| ! | CAATTAATCATCATTGACTG+CGG | + | chr6_3:46615223-46615242 | Msa0952380:intron | 30.0% |
| GCAATTTGGCTGTATATTTA+GGG | - | chr6_3:46615277-46615296 | None:intergenic | 30.0% | |
| TGCAATTTGGCTGTATATTT+AGG | - | chr6_3:46615278-46615297 | None:intergenic | 30.0% | |
| !! | TTGTTTGAGTTTTTAACTGG+AGG | + | chr6_3:46615431-46615450 | Msa0952380:intron | 30.0% |
| !!! | GCCGTATTTTTGGAATTATA+AGG | + | chr6_3:46615459-46615478 | Msa0952380:intron | 30.0% |
| !! | TGTTATGTTAATTTGTTCCC+GGG | + | chr6_3:46615495-46615514 | Msa0952380:intron | 30.0% |
| ATATTCTAGTGAGTTATTCC+CGG | - | chr6_3:46615516-46615535 | None:intergenic | 30.0% | |
| GAATTACATATGCCATTGTT+TGG | + | chr6_3:46615589-46615608 | Msa0952380:intron | 30.0% | |
| CATAGGAATAAATTATACCC+AGG | + | chr6_3:46615635-46615654 | Msa0952380:intron | 30.0% | |
| AATAAAAATGGGCAAAACGT+GGG | - | chr6_3:46615693-46615712 | None:intergenic | 30.0% | |
| TTTATTCCTGTCAAATAGGA+TGG | + | chr6_3:46615707-46615726 | Msa0952380:intron | 30.0% | |
| TTATTCCTGTCAAATAGGAT+GGG | + | chr6_3:46615708-46615727 | Msa0952380:intron | 30.0% | |
| ! | GATTTTCACAGAAATTTACC+TGG | - | chr6_3:46615746-46615765 | None:intergenic | 30.0% |
| ATAGAAGTCCAAACTCAATT+GGG | - | chr6_3:46615971-46615990 | None:intergenic | 30.0% | |
| !!! | GACTTCTATGCATTGATTTT+GGG | + | chr6_3:46615982-46616001 | Msa0952380:intron | 30.0% |
| ATAGGATTTAGAAATGTCGA+TGG | + | chr6_3:46616127-46616146 | Msa0952380:intron | 30.0% | |
| !!! | CACTTTTTTCTACAATTTCC+TGG | + | chr6_3:46616224-46616243 | Msa0952380:intron | 30.0% |
| ! | AATGTTGGAATCTTATTTCC+AGG | - | chr6_3:46616245-46616264 | None:intergenic | 30.0% |
| GATTCCAACATTTATATTCC+TGG | + | chr6_3:46616253-46616272 | Msa0952380:intron | 30.0% | |
| TTTCCCAGGAATATAAATGT+TGG | - | chr6_3:46616260-46616279 | None:intergenic | 30.0% | |
| GGGTTACAAAATTAATACCT+GGG | - | chr6_3:46616289-46616308 | None:intergenic | 30.0% | |
| AGGGTTACAAAATTAATACC+TGG | - | chr6_3:46616290-46616309 | None:intergenic | 30.0% | |
| AATAGGATTCCCAACATTTA+GGG | - | chr6_3:46616325-46616344 | None:intergenic | 30.0% | |
| TATATTTCATTCCGATCTCA+CGG | + | chr6_3:46616442-46616461 | Msa0952380:intron | 30.0% | |
| !! | TTTATTTTCAAACGAGGGTT+GGG | - | chr6_3:46616478-46616497 | None:intergenic | 30.0% |
| !!! | TTTTATTTTCAAACGAGGGT+TGG | - | chr6_3:46616479-46616498 | None:intergenic | 30.0% |
| TGTGTAAGTTATTTGTTTCC+AGG | + | chr6_3:46616507-46616526 | Msa0952380:intron | 30.0% | |
| ACTGTGTATAAAACATTTCC+TGG | - | chr6_3:46616528-46616547 | None:intergenic | 30.0% | |
| TTATACACAGTAACACACAT+TGG | + | chr6_3:46616537-46616556 | Msa0952380:intron | 30.0% | |
| TGTAAGTAAATGCAGTTAGT+TGG | - | chr6_3:46616621-46616640 | None:intergenic | 30.0% | |
| AACTAACTGCATTTACTTAC+AGG | + | chr6_3:46616620-46616639 | Msa0952380:intron | 30.0% | |
| TGCAGTATCTAATACAAATC+TGG | - | chr6_3:46616712-46616731 | None:intergenic | 30.0% | |
| ! | GCGTTTTGTATAATATTCGT+TGG | + | chr6_3:46616812-46616831 | Msa0952380:three_prime_UTR | 30.0% |
| TAATATTCGTTGGTGTATCA+TGG | + | chr6_3:46616822-46616841 | Msa0952380:three_prime_UTR | 30.0% | |
| !! | ATAAAGGGGTATTAGGATAA+AGG | - | chr6_3:46616858-46616877 | None:intergenic | 30.0% |
| TGAGGGAAAACAAACGAAAA+AGG | + | chr6_3:46611779-46611798 | Msa0952380:CDS | 35.0% | |
| GAGGGAAAACAAACGAAAAA+GGG | + | chr6_3:46611780-46611799 | Msa0952380:CDS | 35.0% | |
| TCTACCAACTTATTAGTACG+GGG | - | chr6_3:46611931-46611950 | None:intergenic | 35.0% | |
| ATATCCACAAGATATCGGAA+CGG | - | chr6_3:46612003-46612022 | None:intergenic | 35.0% | |
| GTGGATATGAAGACCTATAT+AGG | + | chr6_3:46612015-46612034 | Msa0952380:CDS | 35.0% | |
| TGAAGGAATTATTGCATAGG+TGG | + | chr6_3:46612055-46612074 | Msa0952380:CDS | 35.0% | |
| GAAGGAATTATTGCATAGGT+GGG | + | chr6_3:46612056-46612075 | Msa0952380:CDS | 35.0% | |
| !! | TATTGTAGGAGAGTGTTTAC+CGG | + | chr6_3:46612161-46612180 | Msa0952380:CDS | 35.0% |
| TTTACCGGAAACTAGTGATA+GGG | + | chr6_3:46612176-46612195 | Msa0952380:CDS | 35.0% | |
| TAGTGTACATTCTAAGCTGA+AGG | + | chr6_3:46612248-46612267 | Msa0952380:CDS | 35.0% | |
| CGGAAAATATAACACACACA+AGG | - | chr6_3:46612328-46612347 | None:intergenic | 35.0% | |
| ACGCTCTTAGTACCTATAAT+TGG | + | chr6_3:46612400-46612419 | Msa0952380:CDS | 35.0% | |
| CGCTCTTAGTACCTATAATT+GGG | + | chr6_3:46612401-46612420 | Msa0952380:CDS | 35.0% | |
| GCTCTTAGTACCTATAATTG+GGG | + | chr6_3:46612402-46612421 | Msa0952380:CDS | 35.0% | |
| GTCATTTGATTAGATATGGG+CGG | + | chr6_3:46612616-46612635 | Msa0952380:intron | 35.0% | |
| ! | GTTTTCCACGCATTAACAAT+TGG | + | chr6_3:46612675-46612694 | Msa0952380:CDS | 35.0% |
| CATTAACAATTGGACCAAAG+TGG | + | chr6_3:46612685-46612704 | Msa0952380:CDS | 35.0% | |
| ! | AAACCTTTTTGCAAATGCGA+AGG | + | chr6_3:46612730-46612749 | Msa0952380:CDS | 35.0% |
| TAACCTTCGCATTTGCAAAA+AGG | - | chr6_3:46612736-46612755 | None:intergenic | 35.0% | |
| !! | TTTTCCATGTCTTGTTGTGT+TGG | - | chr6_3:46612871-46612890 | None:intergenic | 35.0% |
| ACCAACTTGAGAATGGTTAA+CGG | - | chr6_3:46612911-46612930 | None:intergenic | 35.0% | |
| !! | AACCATTCTCAAGTTGGTAT+TGG | + | chr6_3:46612913-46612932 | Msa0952380:CDS | 35.0% |
| CTTATATGGCTGAACATCAA+AGG | + | chr6_3:46612968-46612987 | Msa0952380:CDS | 35.0% | |
| ! | AACACAAAGATTTGCTTTCC+CGG | + | chr6_3:46613001-46613020 | Msa0952380:CDS | 35.0% |
| ATATCCTCATATCATCCTCA+AGG | - | chr6_3:46613035-46613054 | None:intergenic | 35.0% | |
| !! | AAGCAAATAAGGTTGATGGT+AGG | + | chr6_3:46613058-46613077 | Msa0952380:CDS | 35.0% |
| !! | AGCAAATAAGGTTGATGGTA+GGG | + | chr6_3:46613059-46613078 | Msa0952380:CDS | 35.0% |
| AAGATTGATGCGGATAATGA+TGG | + | chr6_3:46613150-46613169 | Msa0952380:CDS | 35.0% | |
| AGATTGATGCGGATAATGAT+GGG | + | chr6_3:46613151-46613170 | Msa0952380:CDS | 35.0% | |
| !! | TAATGATGGGTTGAAAAGTG+AGG | + | chr6_3:46613164-46613183 | Msa0952380:CDS | 35.0% |
| GGAAAAGCAGAAGAAAATGA+TGG | + | chr6_3:46613189-46613208 | Msa0952380:CDS | 35.0% | |
| ! | AGAAAATGATGGGATGAAGT+TGG | + | chr6_3:46613200-46613219 | Msa0952380:CDS | 35.0% |
| AAGTTGGATGATGAAGATGT+TGG | + | chr6_3:46613216-46613235 | Msa0952380:CDS | 35.0% | |
| !! | AGAAAATGATGATGGGATGA+AGG | + | chr6_3:46613263-46613282 | Msa0952380:CDS | 35.0% |
| !! | AAGGTTGATGATGAAGATGT+GGG | + | chr6_3:46613282-46613301 | Msa0952380:CDS | 35.0% |
| AGAAGATAAAGACAATGGGA+TGG | + | chr6_3:46613326-46613345 | Msa0952380:CDS | 35.0% | |
| ! | TGATGATGATATGGCTGAAA+AGG | + | chr6_3:46613356-46613375 | Msa0952380:CDS | 35.0% |
| !!! | ACTACATTTTTTCATGTCGC+GGG | + | chr6_3:46613488-46613507 | Msa0952380:intron | 35.0% |
| AGGTTATTAATATTGCTGGC+AGG | + | chr6_3:46613738-46613757 | Msa0952380:intron | 35.0% | |
| CATGATGAAGTTCGAAAACA+TGG | + | chr6_3:46613770-46613789 | Msa0952380:CDS | 35.0% | |
| TGTTAGGCATGGGATAATAA+AGG | - | chr6_3:46613883-46613902 | None:intergenic | 35.0% | |
| TCAAGATATATATGCCTCGT+TGG | + | chr6_3:46613986-46614005 | Msa0952380:CDS | 35.0% | |
| AGGTGTAGATGATTTCTGAT+TGG | + | chr6_3:46614087-46614106 | Msa0952380:intron | 35.0% | |
| ! | TTGTCTAGAATGTTGATGAG+TGG | + | chr6_3:46614116-46614135 | Msa0952380:intron | 35.0% |
| ! | TGTCTAGAATGTTGATGAGT+GGG | + | chr6_3:46614117-46614136 | Msa0952380:intron | 35.0% |
| CTCTACCTAAAATTCCCTTT+AGG | + | chr6_3:46614334-46614353 | Msa0952380:intron | 35.0% | |
| !!! | GCATTGTGGTTTTGTCTATA+TGG | + | chr6_3:46614368-46614387 | Msa0952380:intron | 35.0% |
| GGGTTTGTGTTGTATTAGTT+CGG | + | chr6_3:46614389-46614408 | Msa0952380:intron | 35.0% | |
| TTTGTGTTGTATTAGTTCGG+TGG | + | chr6_3:46614392-46614411 | Msa0952380:intron | 35.0% | |
| TTGTGTTGTATTAGTTCGGT+GGG | + | chr6_3:46614393-46614412 | Msa0952380:intron | 35.0% | |
| ! | GTTTTGTGTGGTTTTTTGTG+CGG | + | chr6_3:46614422-46614441 | Msa0952380:intron | 35.0% |
| ! | TTTTGTGTGGTTTTTTGTGC+GGG | + | chr6_3:46614423-46614442 | Msa0952380:intron | 35.0% |
| GCAAAATTAGGGGTTACAAT+AGG | - | chr6_3:46614469-46614488 | None:intergenic | 35.0% | |
| !!! | CGAATTTGTTTTATGCAACG+TGG | + | chr6_3:46614564-46614583 | Msa0952380:intron | 35.0% |
| ! | TTACAGAAAGTCCGTTTTGA+AGG | + | chr6_3:46614828-46614847 | Msa0952380:intron | 35.0% |
| !! | TACAGAAAGTCCGTTTTGAA+GGG | + | chr6_3:46614829-46614848 | Msa0952380:intron | 35.0% |
| TATGTTGGAATCTTCTTTGG+AGG | + | chr6_3:46614893-46614912 | Msa0952380:CDS | 35.0% | |
| ! | ATTTTGCAGTCATGATTGTG+GGG | + | chr6_3:46615033-46615052 | Msa0952380:intron | 35.0% |
| TTCTTAAGTACTTGGAGTTG+TGG | + | chr6_3:46615062-46615081 | Msa0952380:CDS | 35.0% | |
| TCTTAAGTACTTGGAGTTGT+GGG | + | chr6_3:46615063-46615082 | Msa0952380:CDS | 35.0% | |
| AGCATTACCAATGAATAGTC+GGG | - | chr6_3:46615121-46615140 | None:intergenic | 35.0% | |
| ATTGGATGTCTACTGCAATT+TGG | - | chr6_3:46615291-46615310 | None:intergenic | 35.0% | |
| TAGAATTGTTAAGACTCAGG+TGG | + | chr6_3:46615332-46615351 | Msa0952380:intron | 35.0% | |
| TATTCTAGTGAGTTATTCCC+GGG | - | chr6_3:46615515-46615534 | None:intergenic | 35.0% | |
| GGAAAATAAAAATGGTTCCC+AGG | + | chr6_3:46615554-46615573 | Msa0952380:intron | 35.0% | |
| AATTCCAACCTTAGATTCCT+GGG | - | chr6_3:46615574-46615593 | None:intergenic | 35.0% | |
| TAATTCCAACCTTAGATTCC+TGG | - | chr6_3:46615575-46615594 | None:intergenic | 35.0% | |
| ATATGCCATTGTTTGGTAGA+TGG | + | chr6_3:46615596-46615615 | Msa0952380:intron | 35.0% | |
| TATGCCATTGTTTGGTAGAT+GGG | + | chr6_3:46615597-46615616 | Msa0952380:intron | 35.0% | |
| GAATAAAAATGGGCAAAACG+TGG | - | chr6_3:46615694-46615713 | None:intergenic | 35.0% | |
| !! | AGGTGATAAGCATTGGTTAA+GGG | - | chr6_3:46615777-46615796 | None:intergenic | 35.0% |
| ATATAGGAGGTGATAAGCAT+TGG | - | chr6_3:46615784-46615803 | None:intergenic | 35.0% | |
| TCAATTGGGGAAAATTCCAA+TGG | - | chr6_3:46615957-46615976 | None:intergenic | 35.0% | |
| ! | GAATTTTCCCCAATTGAGTT+TGG | + | chr6_3:46615960-46615979 | Msa0952380:intron | 35.0% |
| TAGAAGTCCAAACTCAATTG+GGG | - | chr6_3:46615970-46615989 | None:intergenic | 35.0% | |
| CATAGAAGTCCAAACTCAAT+TGG | - | chr6_3:46615972-46615991 | None:intergenic | 35.0% | |
| !!! | GGACTTCTATGCATTGATTT+TGG | + | chr6_3:46615981-46616000 | Msa0952380:intron | 35.0% |
| !!! | ATGCATTGATTTTGGGATGA+TGG | + | chr6_3:46615989-46616008 | Msa0952380:intron | 35.0% |
| TTACACATCCCTTTCCATAT+TGG | - | chr6_3:46616015-46616034 | None:intergenic | 35.0% | |
| GTAATACAAGAAAGAGAACC+TGG | + | chr6_3:46616031-46616050 | Msa0952380:intron | 35.0% | |
| AGTTTAGGCTCTTCATCAAT+AGG | + | chr6_3:46616109-46616128 | Msa0952380:intron | 35.0% | |
| !! | AAATGTCGATGGTATTGACA+GGG | + | chr6_3:46616138-46616157 | Msa0952380:intron | 35.0% |
| TCATGCCATAAAAAATTCCC+AGG | + | chr6_3:46616182-46616201 | Msa0952380:intron | 35.0% | |
| GAATAGGATTCCCAACATTT+AGG | - | chr6_3:46616326-46616345 | None:intergenic | 35.0% | |
| AATGTTGGGAATCCTATTCT+TGG | + | chr6_3:46616327-46616346 | Msa0952380:intron | 35.0% | |
| ATGTTGGGAATCCTATTCTT+GGG | + | chr6_3:46616328-46616347 | Msa0952380:intron | 35.0% | |
| GTTAACATGTGTAACATTCC+CGG | + | chr6_3:46616379-46616398 | Msa0952380:intron | 35.0% | |
| TTAACATGTGTAACATTCCC+GGG | + | chr6_3:46616380-46616399 | Msa0952380:intron | 35.0% | |
| ATATTTCATTCCGATCTCAC+GGG | + | chr6_3:46616443-46616462 | Msa0952380:intron | 35.0% | |
| ! | TTATTTTCAAACGAGGGTTG+GGG | - | chr6_3:46616477-46616496 | None:intergenic | 35.0% |
| TAACTGCATTTACTTACAGG+AGG | + | chr6_3:46616623-46616642 | Msa0952380:intron | 35.0% | |
| TTAACCGATCAATAAATCCG+CGG | - | chr6_3:46616742-46616761 | None:intergenic | 35.0% | |
| TTTGTCTAACTTGATTGTGC+TGG | + | chr6_3:46616769-46616788 | Msa0952380:three_prime_UTR | 35.0% | |
| CGAAAAAGGGATTGTGTTGT+TGG | + | chr6_3:46611793-46611812 | Msa0952380:CDS | 40.0% | |
| GGCATTTGAGTCTTTATCTG+TGG | - | chr6_3:46611910-46611929 | None:intergenic | 40.0% | |
| AATGCCCCGTACTAATAAGT+TGG | + | chr6_3:46611924-46611943 | Msa0952380:CDS | 40.0% | |
| TTTGCGCATCAGACAATGTT+CGG | - | chr6_3:46611960-46611979 | None:intergenic | 40.0% | |
| ! | AGTAGCTTGGGATTTAGAGT+AGG | + | chr6_3:46612084-46612103 | Msa0952380:CDS | 40.0% |
| !! | CTAGACCTTTGTTTGGCTTT+AGG | + | chr6_3:46612132-46612151 | Msa0952380:CDS | 40.0% |
| GCAAACCTAAAGCCAAACAA+AGG | - | chr6_3:46612140-46612159 | None:intergenic | 40.0% | |
| ! | GCTTTAGGTTTGCCTATTGT+AGG | + | chr6_3:46612147-46612166 | Msa0952380:CDS | 40.0% |
| GGTAAACACTCTCCTACAAT+AGG | - | chr6_3:46612162-46612181 | None:intergenic | 40.0% | |
| GTTTACCGGAAACTAGTGAT+AGG | + | chr6_3:46612175-46612194 | Msa0952380:CDS | 40.0% | |
| ! | CTAACCCTATCACTAGTTTC+CGG | - | chr6_3:46612183-46612202 | None:intergenic | 40.0% |
| AACAGCAACACCCCAATTAT+AGG | - | chr6_3:46612415-46612434 | None:intergenic | 40.0% | |
| TCAATACCTGCAATACTGCT+GGG | - | chr6_3:46612524-46612543 | None:intergenic | 40.0% | |
| TTCAATACCTGCAATACTGC+TGG | - | chr6_3:46612525-46612544 | None:intergenic | 40.0% | |
| GAACATTTATCCCTAACCAG+TGG | + | chr6_3:46612641-46612660 | Msa0952380:CDS | 40.0% | |
| ! | CTTAATTGGACCACTGGTTA+GGG | - | chr6_3:46612654-46612673 | None:intergenic | 40.0% |
| AAAACGCTTAATTGGACCAC+TGG | - | chr6_3:46612660-46612679 | None:intergenic | 40.0% | |
| ATGCGTGGAAAACGCTTAAT+TGG | - | chr6_3:46612668-46612687 | None:intergenic | 40.0% | |
| TTGGTCCAATTGTTAATGCG+TGG | - | chr6_3:46612683-46612702 | None:intergenic | 40.0% | |
| AACAATTGGACCAAAGTGGA+TGG | + | chr6_3:46612689-46612708 | Msa0952380:CDS | 40.0% | |
| ! | TGATTAGTTGGTTGAGGACT+TGG | + | chr6_3:46612843-46612862 | Msa0952380:intron | 40.0% |
| CTCCAATACCAACTTGAGAA+TGG | - | chr6_3:46612918-46612937 | None:intergenic | 40.0% | |
| TATGGCTGAACATCAAAGGT+TGG | + | chr6_3:46612972-46612991 | Msa0952380:CDS | 40.0% | |
| ! | ACACAAAGATTTGCTTTCCC+GGG | + | chr6_3:46613002-46613021 | Msa0952380:CDS | 40.0% |
| CAATCCTTGAGGATGATATG+AGG | + | chr6_3:46613028-46613047 | Msa0952380:CDS | 40.0% | |
| ! | TGATGAAGATGTTGGTGAAG+AGG | + | chr6_3:46613224-46613243 | Msa0952380:CDS | 40.0% |
| !! | GAAGGTTGATGATGAAGATG+TGG | + | chr6_3:46613281-46613300 | Msa0952380:CDS | 40.0% |
| TAAAGACAATGGGATGGAGT+TGG | + | chr6_3:46613332-46613351 | Msa0952380:CDS | 40.0% | |
| ! | GGAGTTGGATGATGATGATA+TGG | + | chr6_3:46613347-46613366 | Msa0952380:CDS | 40.0% |
| ! | GGAGTTTTTCCAATGCATGA+AGG | + | chr6_3:46613601-46613620 | Msa0952380:CDS | 40.0% |
| ! | GATTTAAAGGCACATCCTGA+AGG | + | chr6_3:46613934-46613953 | Msa0952380:CDS | 40.0% |
| AAGAAAACAGGCAGTGATGA+AGG | - | chr6_3:46614179-46614198 | None:intergenic | 40.0% | |
| ! | CACTGCCTAAAGGGAATTTT+AGG | - | chr6_3:46614342-46614361 | None:intergenic | 40.0% |
| CTAAAATTCCCTTTAGGCAG+TGG | + | chr6_3:46614340-46614359 | Msa0952380:intron | 40.0% | |
| ! | TGTGTTGTATTAGTTCGGTG+GGG | + | chr6_3:46614394-46614413 | Msa0952380:intron | 40.0% |
| !!! | TTTGTGTGGTTTTTTGTGCG+GGG | + | chr6_3:46614424-46614443 | Msa0952380:intron | 40.0% |
| CATACATTGTCCTCTTCCTA+TGG | - | chr6_3:46614667-46614686 | None:intergenic | 40.0% | |
| GAAGAGGACAATGTATGTGT+TGG | + | chr6_3:46614670-46614689 | Msa0952380:CDS | 40.0% | |
| ACAGTGAAAGAAATGCCTCA+AGG | + | chr6_3:46614702-46614721 | Msa0952380:CDS | 40.0% | |
| !!! | ACAGAAAGTCCGTTTTGAAG+GGG | + | chr6_3:46614830-46614849 | Msa0952380:intron | 40.0% |
| ATTCCACTACCCCTTCAAAA+CGG | - | chr6_3:46614842-46614861 | None:intergenic | 40.0% | |
| ! | ATCTTCTTTGGAGGTTGTAG+CGG | + | chr6_3:46614902-46614921 | Msa0952380:CDS | 40.0% |
| GCTGTATATTTAGGGAATGC+GGG | - | chr6_3:46615269-46615288 | None:intergenic | 40.0% | |
| GGCTGTATATTTAGGGAATG+CGG | - | chr6_3:46615270-46615289 | None:intergenic | 40.0% | |
| TATATGGGTGCGTTTGTTTG+AGG | + | chr6_3:46615533-46615552 | Msa0952380:intron | 40.0% | |
| AAATGGTTCCCAGGAATCTA+AGG | + | chr6_3:46615563-46615582 | Msa0952380:intron | 40.0% | |
| TGTTCCCATCTACCAAACAA+TGG | - | chr6_3:46615604-46615623 | None:intergenic | 40.0% | |
| ACTTTCCCATCCTATTTGAC+AGG | - | chr6_3:46615716-46615735 | None:intergenic | 40.0% | |
| !!! | GATGGGAAAGTTTTATTCCC+AGG | + | chr6_3:46615725-46615744 | Msa0952380:intron | 40.0% |
| !! | GAGGTGATAAGCATTGGTTA+AGG | - | chr6_3:46615778-46615797 | None:intergenic | 40.0% |
| !!! | TTTTGGGATGATGGCCAATA+TGG | + | chr6_3:46615998-46616017 | Msa0952380:intron | 40.0% |
| ! | GATGATGGCCAATATGGAAA+GGG | + | chr6_3:46616004-46616023 | Msa0952380:intron | 40.0% |
| ! | AATCCTTCCTGAGTTCTAGT+CGG | - | chr6_3:46616087-46616106 | None:intergenic | 40.0% |
| CTCAGGAAGGATTAGAGTTT+AGG | + | chr6_3:46616094-46616113 | Msa0952380:intron | 40.0% | |
| !! | GAAATGTCGATGGTATTGAC+AGG | + | chr6_3:46616137-46616156 | Msa0952380:intron | 40.0% |
| !! | AATGTCGATGGTATTGACAG+GGG | + | chr6_3:46616139-46616158 | Msa0952380:intron | 40.0% |
| ! | TTTAGGGTGCGTTTGTTTGA+GGG | - | chr6_3:46616309-46616328 | None:intergenic | 40.0% |
| ! | ATTTAGGGTGCGTTTGTTTG+AGG | - | chr6_3:46616310-46616329 | None:intergenic | 40.0% |
| AACAAACGCACCCTAAATGT+TGG | + | chr6_3:46616312-46616331 | Msa0952380:intron | 40.0% | |
| ACAAACGCACCCTAAATGTT+GGG | + | chr6_3:46616313-46616332 | Msa0952380:intron | 40.0% | |
| GGAAAAAATTCCCGTGAGAT+CGG | - | chr6_3:46616456-46616475 | None:intergenic | 40.0% | |
| ACTTACAGGAGGATATCCTT+CGG | + | chr6_3:46616634-46616653 | Msa0952380:intron | 40.0% | |
| CAGTGAAATTGTTTGTCGTC+TGG | + | chr6_3:46616662-46616681 | Msa0952380:CDS | 40.0% | |
| ATACCCGCGGATTTATTGAT+CGG | + | chr6_3:46616735-46616754 | Msa0952380:CDS | 40.0% | |
| TAACCGATCAATAAATCCGC+GGG | - | chr6_3:46616741-46616760 | None:intergenic | 40.0% | |
| AACTCCGTTCCGATATCTTG+TGG | + | chr6_3:46611996-46612015 | Msa0952380:CDS | 45.0% | |
| ! | TGGGATTTAGAGTAGGCGTT+AGG | + | chr6_3:46612091-46612110 | Msa0952380:CDS | 45.0% |
| AAGCTGAAGGTCCTTCAAGA+AGG | + | chr6_3:46612261-46612280 | Msa0952380:CDS | 45.0% | |
| AGCTGAAGGTCCTTCAAGAA+GGG | + | chr6_3:46612262-46612281 | Msa0952380:CDS | 45.0% | |
| ! | GCTTAATTGGACCACTGGTT+AGG | - | chr6_3:46612655-46612674 | None:intergenic | 45.0% |
| AATTGGACCAAAGTGGATGG+AGG | + | chr6_3:46612692-46612711 | Msa0952380:CDS | 45.0% | |
| AACATGACCTCCATCCACTT+TGG | - | chr6_3:46612702-46612721 | None:intergenic | 45.0% | |
| GGTTCCAACACAACAAGACA+TGG | + | chr6_3:46612864-46612883 | Msa0952380:CDS | 45.0% | |
| GCCGTTAACCATTCTCAAGT+TGG | + | chr6_3:46612907-46612926 | Msa0952380:CDS | 45.0% | |
| ATCCTCAAGGATTGAAACCC+GGG | - | chr6_3:46613022-46613041 | None:intergenic | 45.0% | |
| CATCCTCAAGGATTGAAACC+CGG | - | chr6_3:46613023-46613042 | None:intergenic | 45.0% | |
| TATTCCGATGCCAAGTAGCA+TGG | + | chr6_3:46613086-46613105 | Msa0952380:CDS | 45.0% | |
| ! | ACTTCCATGCTACTTGGCAT+CGG | - | chr6_3:46613093-46613112 | None:intergenic | 45.0% |
| ATGCCAAGTAGCATGGAAGT+AGG | + | chr6_3:46613093-46613112 | Msa0952380:CDS | 45.0% | |
| CTTCCTACTTCCATGCTACT+TGG | - | chr6_3:46613099-46613118 | None:intergenic | 45.0% | |
| AGTAGCATGGAAGTAGGAAG+TGG | + | chr6_3:46613099-46613118 | Msa0952380:CDS | 45.0% | |
| GTAGCATGGAAGTAGGAAGT+GGG | + | chr6_3:46613100-46613119 | Msa0952380:CDS | 45.0% | |
| GGAAGTGGGTCAAAACATGT+AGG | + | chr6_3:46613114-46613133 | Msa0952380:CDS | 45.0% | |
| !! | TGATGGGTTGAAAAGTGAGG+CGG | + | chr6_3:46613167-46613186 | Msa0952380:CDS | 45.0% |
| CATGCATTGGAAAAACTCCC+CGG | - | chr6_3:46613600-46613619 | None:intergenic | 45.0% | |
| ! | TTTTCCAATGCATGAAGGCG+AGG | + | chr6_3:46613606-46613625 | Msa0952380:CDS | 45.0% |
| CATTGGAGTTTACGTCCTTC+AGG | - | chr6_3:46613952-46613971 | None:intergenic | 45.0% | |
| CTGAAGGACGTAAACTCCAA+TGG | + | chr6_3:46613950-46613969 | Msa0952380:CDS | 45.0% | |
| !! | GTAAACTCCAATGGACTGAG+CGG | + | chr6_3:46613959-46613978 | Msa0952380:CDS | 45.0% |
| TGAATTTCCGCTCAGTCCAT+TGG | - | chr6_3:46613969-46613988 | None:intergenic | 45.0% | |
| ! | TTCCCTTTAGGCAGTGGATT+TGG | + | chr6_3:46614346-46614365 | Msa0952380:intron | 45.0% |
| TGCCAAATCCACTGCCTAAA+GGG | - | chr6_3:46614351-46614370 | None:intergenic | 45.0% | |
| ATGCCAAATCCACTGCCTAA+AGG | - | chr6_3:46614352-46614371 | None:intergenic | 45.0% | |
| ! | GTGTTGTATTAGTTCGGTGG+GGG | + | chr6_3:46614395-46614414 | Msa0952380:intron | 45.0% |
| ! | TGTTGTATTAGTTCGGTGGG+GGG | + | chr6_3:46614396-46614415 | Msa0952380:intron | 45.0% |
| CATGTTACGTGTTGGACCAT+AGG | + | chr6_3:46614648-46614667 | Msa0952380:CDS | 45.0% | |
| ATTATCCAAACGCTGCCTTG+AGG | - | chr6_3:46614720-46614739 | None:intergenic | 45.0% | |
| GCAGCGTTTGGATAATGCAA+TGG | + | chr6_3:46614724-46614743 | Msa0952380:CDS | 45.0% | |
| AAGTACTTGGAGTTGTGGGA+TGG | + | chr6_3:46615067-46615086 | Msa0952380:CDS | 45.0% | |
| TGTGGGATGGTGAAGCAAAA+TGG | + | chr6_3:46615080-46615099 | Msa0952380:CDS | 45.0% | |
| GTGGGATGGTGAAGCAAAAT+GGG | + | chr6_3:46615081-46615100 | Msa0952380:CDS | 45.0% | |
| TGGGATGGTGAAGCAAAATG+GGG | + | chr6_3:46615082-46615101 | Msa0952380:CDS | 45.0% | |
| GAGTATGCCCGACTATTCAT+TGG | + | chr6_3:46615111-46615130 | Msa0952380:CDS | 45.0% | |
| GTATATTTAGGGAATGCGGG+AGG | - | chr6_3:46615266-46615285 | None:intergenic | 45.0% | |
| !! | GCATTGGTTAAGGGCAGAAT+TGG | - | chr6_3:46615768-46615787 | None:intergenic | 45.0% |
| ! | GGATGATGGCCAATATGGAA+AGG | + | chr6_3:46616003-46616022 | Msa0952380:intron | 45.0% |
| ! | AGAACCTGGTTTGTCTAGCA+GGG | + | chr6_3:46616045-46616064 | Msa0952380:intron | 45.0% |
| TAATCCCTGCTAGACAAACC+AGG | - | chr6_3:46616052-46616071 | None:intergenic | 45.0% | |
| ACACTCCTACAACTAAGTCC+CGG | - | chr6_3:46616401-46616420 | None:intergenic | 45.0% | |
| CAATTTCACTGCGAATCCGA+AGG | - | chr6_3:46616653-46616672 | None:intergenic | 45.0% | |
| AGATACTGCAAAGATACCCG+CGG | + | chr6_3:46616722-46616741 | Msa0952380:CDS | 45.0% | |
| !!! | TAAATTTTATCATTAAAATT+AGG | + | chr6_3:46614592-46614611 | Msa0952380:intron | 5.0% |
| !! | AAATTTAAAAATTTCAAATT+AGG | - | chr6_3:46615017-46615036 | None:intergenic | 5.0% |
| TAGGTGGGATGCAAGTAGCT+TGG | + | chr6_3:46612071-46612090 | Msa0952380:CDS | 50.0% | |
| AGGTGGGATGCAAGTAGCTT+GGG | + | chr6_3:46612072-46612091 | Msa0952380:CDS | 50.0% | |
| TAGAGTAGGCGTTAGGACTG+TGG | + | chr6_3:46612098-46612117 | Msa0952380:CDS | 50.0% | |
| GCTGAAGGTCCTTCAAGAAG+GGG | + | chr6_3:46612263-46612282 | Msa0952380:CDS | 50.0% | |
| CTACGTTGTCCCCTTCTTGA+AGG | - | chr6_3:46612275-46612294 | None:intergenic | 50.0% | |
| TTCCCGGGTTTCAATCCTTG+AGG | + | chr6_3:46613017-46613036 | Msa0952380:CDS | 50.0% | |
| !! | GATGGGTTGAAAAGTGAGGC+GGG | + | chr6_3:46613168-46613187 | Msa0952380:CDS | 50.0% |
| GTAGATGAGTTGCGTGTTGC+CGG | + | chr6_3:46613578-46613597 | Msa0952380:CDS | 50.0% | |
| TAGATGAGTTGCGTGTTGCC+GGG | + | chr6_3:46613579-46613598 | Msa0952380:CDS | 50.0% | |
| ACTTCCTCGCCTTCATGCAT+TGG | - | chr6_3:46613613-46613632 | None:intergenic | 50.0% | |
| AATGCATGAAGGCGAGGAAG+TGG | + | chr6_3:46613612-46613631 | Msa0952380:CDS | 50.0% | |
| ATGCATGAAGGCGAGGAAGT+GGG | + | chr6_3:46613613-46613632 | Msa0952380:CDS | 50.0% | |
| TCAAGTGTCTTGGTCCAACG+AGG | - | chr6_3:46614003-46614022 | None:intergenic | 50.0% | |
| TCGTTGGACCAAGACACTTG+AGG | + | chr6_3:46614002-46614021 | Msa0952380:CDS | 50.0% | |
| ! | AGGCAGTGGATTTGGCATTG+TGG | + | chr6_3:46614354-46614373 | Msa0952380:intron | 50.0% |
| GCGGGGTTTACGCTTATGTT+TGG | + | chr6_3:46614441-46614460 | Msa0952380:intron | 50.0% | |
| TATTAGGCAGAGTCGTCGCA+AGG | - | chr6_3:46614506-46614525 | None:intergenic | 50.0% | |
| TGTCCAGTGGTCTTCGAACT+GGG | - | chr6_3:46614630-46614649 | None:intergenic | 50.0% | |
| ATGTCCAGTGGTCTTCGAAC+TGG | - | chr6_3:46614631-46614650 | None:intergenic | 50.0% | |
| CCAACACGTAACATGTCCAG+TGG | - | chr6_3:46614643-46614662 | None:intergenic | 50.0% | |
| CCACTGGACATGTTACGTGT+TGG | + | chr6_3:46614640-46614659 | Msa0952380:CDS | 50.0% | |
| ACGTGTTGGACCATAGGAAG+AGG | + | chr6_3:46614654-46614673 | Msa0952380:CDS | 50.0% | |
| AAATGCCTCAAGGCAGCGTT+TGG | + | chr6_3:46614712-46614731 | Msa0952380:CDS | 50.0% | |
| !!! | AGTCCGTTTTGAAGGGGTAG+TGG | + | chr6_3:46614836-46614855 | Msa0952380:CDS | 50.0% |
| ! | TTCTTTGGAGGTTGTAGCGG+TGG | + | chr6_3:46614905-46614924 | Msa0952380:CDS | 50.0% |
| GGGATGGTGAAGCAAAATGG+GGG | + | chr6_3:46615083-46615102 | Msa0952380:CDS | 50.0% | |
| !! | GGAGGAGTGTGCCGTATTTT+TGG | + | chr6_3:46615449-46615468 | Msa0952380:intron | 50.0% |
| ! | GGTTCCCAGGAATCTAAGGT+TGG | + | chr6_3:46615567-46615586 | Msa0952380:intron | 50.0% |
| GCAAAACGTGGGTCAAACGT+CGG | - | chr6_3:46615682-46615701 | None:intergenic | 50.0% | |
| ! | GAGAACCTGGTTTGTCTAGC+AGG | + | chr6_3:46616044-46616063 | Msa0952380:intron | 50.0% |
| ! | ATCCACACCGACTAGAACTC+AGG | + | chr6_3:46616077-46616096 | Msa0952380:intron | 50.0% |
| ! | TTCCTGAGTTCTAGTCGGTG+TGG | - | chr6_3:46616082-46616101 | None:intergenic | 50.0% |
| ! | ACACCGACTAGAACTCAGGA+AGG | + | chr6_3:46616081-46616100 | Msa0952380:intron | 50.0% |
| TTCCTGGGAAAGCTAATCCC+AGG | + | chr6_3:46616269-46616288 | Msa0952380:intron | 50.0% | |
| !! | TACCTGGGATTAGCTTTCCC+AGG | - | chr6_3:46616274-46616293 | None:intergenic | 50.0% |
| CATTCCCGGGACTTAGTTGT+AGG | + | chr6_3:46616393-46616412 | Msa0952380:intron | 50.0% | |
| CACTCCTACAACTAAGTCCC+GGG | - | chr6_3:46616400-46616419 | None:intergenic | 50.0% | |
| GGGACTTAGTTGTAGGAGTG+TGG | + | chr6_3:46616400-46616419 | Msa0952380:intron | 50.0% | |
| TGGTTGCCCAGCAGTATTGC+AGG | + | chr6_3:46612515-46612534 | Msa0952380:CDS | 55.0% | |
| AGATGAGTTGCGTGTTGCCG+GGG | + | chr6_3:46613580-46613599 | Msa0952380:CDS | 55.0% | |
| !! | CCAAGACACTTGAGGCGTTG+CGG | + | chr6_3:46614010-46614029 | Msa0952380:CDS | 55.0% |
| ! | GTATTAGTTCGGTGGGGGGT+TGG | + | chr6_3:46614400-46614419 | Msa0952380:intron | 55.0% |
| CAGTGGTCTTCGAACTGGGT+TGG | - | chr6_3:46614626-46614645 | None:intergenic | 55.0% | |
| CAACCCAGTTCGAAGACCAC+TGG | + | chr6_3:46614624-46614643 | Msa0952380:CDS | 55.0% | |
| CCGCAACGCCTCAAGTGTCT+TGG | - | chr6_3:46614013-46614032 | None:intergenic | 60.0% | |
| !!! | GGTGGGGGGTTGGTTTTGTG+TGG | + | chr6_3:46614410-46614429 | Msa0952380:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 46611778 | 46617002 | 46611778 | ID=Msa0952380;Name=Msa0952380 |
| chr6_3 | mRNA | 46611778 | 46617002 | 46611778 | ID=Msa0952380-mRNA-1;Parent=Msa0952380;Name=Msa0952380-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.8|0.63|1|1|1|11|241|718 |
| chr6_3 | exon | 46611778 | 46611816 | 46611778 | ID=Msa0952380-mRNA-1:exon:10298;Parent=Msa0952380-mRNA-1 |
| chr6_3 | exon | 46611907 | 46612536 | 46611907 | ID=Msa0952380-mRNA-1:exon:10299;Parent=Msa0952380-mRNA-1 |
| chr6_3 | exon | 46612629 | 46612751 | 46612629 | ID=Msa0952380-mRNA-1:exon:10300;Parent=Msa0952380-mRNA-1 |
| chr6_3 | exon | 46612850 | 46613457 | 46612850 | ID=Msa0952380-mRNA-1:exon:10301;Parent=Msa0952380-mRNA-1 |
| chr6_3 | exon | 46613565 | 46613646 | 46613565 | ID=Msa0952380-mRNA-1:exon:10302;Parent=Msa0952380-mRNA-1 |
| chr6_3 | exon | 46613740 | 46613829 | 46613740 | ID=Msa0952380-mRNA-1:exon:10303;Parent=Msa0952380-mRNA-1 |
| chr6_3 | exon | 46613919 | 46614044 | 46613919 | ID=Msa0952380-mRNA-1:exon:10304;Parent=Msa0952380-mRNA-1 |
| chr6_3 | exon | 46614614 | 46614745 | 46614614 | ID=Msa0952380-mRNA-1:exon:10305;Parent=Msa0952380-mRNA-1 |
| chr6_3 | exon | 46614834 | 46614949 | 46614834 | ID=Msa0952380-mRNA-1:exon:10306;Parent=Msa0952380-mRNA-1 |
| chr6_3 | exon | 46615042 | 46615132 | 46615042 | ID=Msa0952380-mRNA-1:exon:10307;Parent=Msa0952380-mRNA-1 |
| chr6_3 | exon | 46616642 | 46617002 | 46616642 | ID=Msa0952380-mRNA-1:exon:10308;Parent=Msa0952380-mRNA-1 |
| chr6_3 | CDS | 46611778 | 46611816 | 46611778 | ID=Msa0952380-mRNA-1:cds;Parent=Msa0952380-mRNA-1 |
| chr6_3 | CDS | 46611907 | 46612536 | 46611907 | ID=Msa0952380-mRNA-1:cds;Parent=Msa0952380-mRNA-1 |
| chr6_3 | CDS | 46612629 | 46612751 | 46612629 | ID=Msa0952380-mRNA-1:cds;Parent=Msa0952380-mRNA-1 |
| chr6_3 | CDS | 46612850 | 46613457 | 46612850 | ID=Msa0952380-mRNA-1:cds;Parent=Msa0952380-mRNA-1 |
| chr6_3 | CDS | 46613565 | 46613646 | 46613565 | ID=Msa0952380-mRNA-1:cds;Parent=Msa0952380-mRNA-1 |
| chr6_3 | CDS | 46613740 | 46613829 | 46613740 | ID=Msa0952380-mRNA-1:cds;Parent=Msa0952380-mRNA-1 |
| chr6_3 | CDS | 46613919 | 46614044 | 46613919 | ID=Msa0952380-mRNA-1:cds;Parent=Msa0952380-mRNA-1 |
| chr6_3 | CDS | 46614614 | 46614745 | 46614614 | ID=Msa0952380-mRNA-1:cds;Parent=Msa0952380-mRNA-1 |
| chr6_3 | CDS | 46614834 | 46614949 | 46614834 | ID=Msa0952380-mRNA-1:cds;Parent=Msa0952380-mRNA-1 |
| chr6_3 | CDS | 46615042 | 46615132 | 46615042 | ID=Msa0952380-mRNA-1:cds;Parent=Msa0952380-mRNA-1 |
| chr6_3 | CDS | 46616642 | 46616761 | 46616642 | ID=Msa0952380-mRNA-1:cds;Parent=Msa0952380-mRNA-1 |
| chr6_3 | three_prime_UTR | 46616762 | 46617002 | 46616762 | ID=Msa0952380-mRNA-1:three_prime_utr;Parent=Msa0952380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
