AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0325800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 129 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCGTTATGGTTTGGTTTC+CGG 0.173244 2_4:+33785523 Msa0325800:three_prime_UTR
CTTTAATTGTAAACTCTAAT+TGG 0.183153 2_4:-33785930 None:intergenic
AAATATAGAGAGAATTTAAA+TGG 0.184250 2_4:+33788619 Msa0325800:three_prime_UTR
GTATATATTTATCTCAATTC+TGG 0.228631 2_4:+33786542 Msa0325800:three_prime_UTR
TTCAAACTGCACTTGTCTTT+TGG 0.238459 2_4:+33785193 Msa0325800:three_prime_UTR
TCATCAGGCTTCTACTCTTA+TGG 0.240846 2_4:+33786327 Msa0325800:three_prime_UTR
AAGTTTCAGCTTTAAGAATA+AGG 0.250889 2_4:+33787050 Msa0325800:three_prime_UTR
CTTCCTTCGGCGTCCCTGTT+TGG 0.256077 2_4:+33784455 Msa0325800:CDS
AATTTGAACTTAGTATATTA+TGG 0.279206 2_4:+33786081 Msa0325800:three_prime_UTR
ATATTATGGTTCAAGATTAA+AGG 0.283432 2_4:+33786095 Msa0325800:three_prime_UTR
TCAAAGATCCCTTTGCTTCC+TGG 0.287120 2_4:-33785805 None:intergenic
GCTGATTTATATTTATATTC+AGG 0.289412 2_4:-33785982 None:intergenic
TACAAGCTATTCTTCGAATT+AGG 0.290872 2_4:-33786937 None:intergenic
CTAGGTGGTTGTTAGCAATT+TGG 0.299532 2_4:+33784573 Msa0325800:CDS
GCTTACTCTTGCTAATGCTT+TGG 0.322777 2_4:+33785366 Msa0325800:three_prime_UTR
TGCAATGGTTCATTACATTC+AGG 0.343536 2_4:+33785648 Msa0325800:three_prime_UTR
TCTAACGCGGGGAATAAATA+TGG 0.348893 2_4:-33786750 None:intergenic
TATTGTAATCTGTAGGATCT+TGG 0.354549 2_4:+33788393 Msa0325800:three_prime_UTR
TATTGTAATCTGTAGGATCT+TGG 0.354549 2_4:+33788427 Msa0325800:three_prime_UTR
GTTTCACTAATATCAAAATC+TGG 0.370567 2_4:-33786375 None:intergenic
CGAACCAGCGTCACGCCATC+AGG 0.377988 2_4:-33784801 None:intergenic
GTAGGTATTGGGATCTTGTT+TGG 0.385389 2_4:+33785776 Msa0325800:intron
TCGGACTCATTGATTGCATC+AGG 0.402153 2_4:+33784821 Msa0325800:three_prime_UTR
AATATAGAGAGAATTTAAAT+GGG 0.406386 2_4:+33788620 Msa0325800:three_prime_UTR
CGGATTGATCTTGACATGGC+TGG 0.407294 2_4:+33785267 Msa0325800:three_prime_UTR
ATATTTATTCCCCGCGTTAG+AGG 0.411499 2_4:+33786752 Msa0325800:three_prime_UTR
AATATCAAAATCTGGCCATC+CGG 0.419141 2_4:-33786367 None:intergenic
CTGATGGCGTGACGCTGGTT+CGG 0.420919 2_4:+33784802 Msa0325800:exon
AGTTTATAGGTTTCAGTACA+TGG 0.423641 2_4:+33786501 Msa0325800:intron
TATCTCAATTCTGGACCAAC+TGG 0.424195 2_4:+33786551 Msa0325800:three_prime_UTR
GTACTGGGTTCGTTATGGTT+TGG 0.424720 2_4:+33785516 Msa0325800:three_prime_UTR
AATCGACAAGGAGACCAAAC+AGG 0.427472 2_4:-33784469 None:intergenic
ACTGGGTTCGTGACGTGATA+TGG 0.432550 2_4:+33784755 Msa0325800:CDS
TCCCCTTAAATATTGACAAA+AGG 0.433210 2_4:+33786207 Msa0325800:three_prime_UTR
CATTTACAAAATGTGTGAAC+TGG 0.436677 2_4:-33785391 None:intergenic
GTTATGACCCACTTTGGCTA+TGG 0.436788 2_4:+33786573 Msa0325800:three_prime_UTR
TATAGTTCAAAATGAGGATC+AGG 0.443469 2_4:+33786133 Msa0325800:three_prime_UTR
GAATTGAATGTGTAGGTATT+GGG 0.449053 2_4:+33785765 Msa0325800:intron
CGAAGTTATAGTTCAAAATG+AGG 0.453490 2_4:+33786127 Msa0325800:three_prime_UTR
TTATGACCCACTTTGGCTAT+GGG 0.455457 2_4:+33786574 Msa0325800:three_prime_UTR
CTAACGTTGCCCCGTTGATC+CGG 0.455749 2_4:-33786786 None:intergenic
CGTCATCGTTCGCCGTCTCT+AGG 0.462516 2_4:+33784555 Msa0325800:CDS
GATCAACGGGGCAACGTTAG+TGG 0.462859 2_4:+33786789 Msa0325800:three_prime_UTR
ATTAGAGTTTACAATTAAAG+TGG 0.469319 2_4:+33785933 Msa0325800:three_prime_UTR
TCGTCACACCACCATCTTCG+TGG 0.471917 2_4:-33784401 None:intergenic
TAGTGCCTCTGCAACACCTC+TGG 0.474866 2_4:-33788273 None:intergenic
ATGTGGGATCCTTCTCTTGA+GGG 0.478112 2_4:+33786176 Msa0325800:three_prime_UTR
TGATGTTGGAAATTTATGTA+AGG 0.478314 2_4:+33788551 Msa0325800:three_prime_UTR
TGCGTCTCTGATAAGTGCAC+AGG 0.478736 2_4:+33788308 Msa0325800:three_prime_UTR
AGGTTTCAGTACATGGAAGA+AGG 0.485879 2_4:+33786508 Msa0325800:intron
GGAATTTATGAGCACTTACC+CGG 0.490203 2_4:+33786348 Msa0325800:three_prime_UTR
AAAACATACACTAACATCAT+GGG 0.494562 2_4:-33788518 None:intergenic
ATGGTATGCAGAGGCGAGAA+AGG 0.495213 2_4:+33784774 Msa0325800:CDS
AAATGTCTTCAGATAATTGT+GGG 0.497863 2_4:-33786988 None:intergenic
TAGCTTGTAATGTTGCTAAG+AGG 0.503900 2_4:+33786951 Msa0325800:three_prime_UTR
GATCTTGTTTGGAGTGCACC+AGG 0.504829 2_4:+33785787 Msa0325800:three_prime_UTR
GAATTGAGATAAATATATAC+AGG 0.506382 2_4:-33786539 None:intergenic
CCGTCGCTTCCTCCTTCCTT+CGG 0.510379 2_4:+33784442 Msa0325800:CDS
GGAGATTACTTGTCTTAGAC+AGG 0.510984 2_4:+33786811 Msa0325800:three_prime_UTR
GTAACAAAGGAAAGTAGTAT+TGG 0.512968 2_4:-33785836 None:intergenic
AAATCACATACTTTGTTCCC+TGG 0.513655 2_4:-33785415 None:intergenic
TAATTGTAAACTCTAATTGG+TGG 0.515183 2_4:-33785927 None:intergenic
TACTTTCCTTTGTTACTACC+AGG 0.521592 2_4:+33785843 Msa0325800:three_prime_UTR
CAATGTGATAAACTTTGTAC+AGG 0.525680 2_4:+33787797 Msa0325800:three_prime_UTR
ATATCAAAATCTGGCCATCC+GGG 0.534719 2_4:-33786366 None:intergenic
TAATAGCAAAAGACTCATCC+TGG 0.535124 2_4:-33785861 None:intergenic
TTGTAAATGGCCAGGGAACA+TGG 0.536074 2_4:+33785437 Msa0325800:three_prime_UTR
CAACTGGTTATGACCCACTT+TGG 0.536890 2_4:+33786567 Msa0325800:three_prime_UTR
TGGAGTGCACCAGGAAGCAA+AGG 0.545156 2_4:+33785796 Msa0325800:three_prime_UTR
CAATCTTATAAGTTCGCTTG+AGG 0.549363 2_4:+33786043 Msa0325800:three_prime_UTR
TTGAATTTATTGTAATCTGT+AGG 0.550964 2_4:+33788420 Msa0325800:three_prime_UTR
TTAGAGTTTACAATTAAAGT+GGG 0.557364 2_4:+33785934 Msa0325800:three_prime_UTR
ATCAACGGGGCAACGTTAGT+GGG 0.558798 2_4:+33786790 Msa0325800:three_prime_UTR
TGATGACAGAAGTTCAAAGT+TGG 0.558995 2_4:+33786727 Msa0325800:three_prime_UTR
AATCCCTGATGGCGTGACGC+TGG 0.559602 2_4:+33784797 Msa0325800:exon
CTGGTTTGAGAGCTAAGATA+AGG 0.560800 2_4:+33785286 Msa0325800:three_prime_UTR
AACTAACAAACCCCAAACTC+CGG 0.565899 2_4:-33784616 None:intergenic
CAAACAGGGACGCCGAAGGA+AGG 0.569818 2_4:-33784454 None:intergenic
AGGAGGAAGCGACGGTGGTG+CGG 0.573939 2_4:-33784434 None:intergenic
AGTAAGCATACCATGTTCCC+TGG 0.576511 2_4:-33785447 None:intergenic
GCAATGTAGATCCACGAAGA+TGG 0.576536 2_4:+33784390 Msa0325800:intron
AAAATGTCTTCAGATAATTG+TGG 0.576965 2_4:-33786989 None:intergenic
GCATCCTCCCATAGCCAAAG+TGG 0.578225 2_4:-33786581 None:intergenic
CGTTATGGTTTGGTTTCCGG+TGG 0.581466 2_4:+33785526 Msa0325800:three_prime_UTR
AGACCAAACAGGGACGCCGA+AGG 0.582809 2_4:-33784458 None:intergenic
TTAGCAAGAGTAAGCATGAG+AGG 0.585510 2_4:-33785358 None:intergenic
GCTTTCATTCAGAAGAATGT+GGG 0.586990 2_4:+33786160 Msa0325800:three_prime_UTR
ACAGGGACGCCGAAGGAAGG+AGG 0.588318 2_4:-33784451 None:intergenic
ATTTACAAAATGTGTGAACT+GGG 0.591062 2_4:-33785390 None:intergenic
CTTGTTGAATATGATTCCAG+AGG 0.593773 2_4:+33788257 Msa0325800:three_prime_UTR
AGCTTTCATTCAGAAGAATG+TGG 0.594635 2_4:+33786159 Msa0325800:three_prime_UTR
ACAAACTTTCCCTCAAGAGA+AGG 0.598936 2_4:-33786185 None:intergenic
AGTTCAAAATGAGGATCAGG+TGG 0.600536 2_4:+33786136 Msa0325800:three_prime_UTR
CTGTGAGTTATTACACGGCA+AGG 0.607421 2_4:+33788357 Msa0325800:three_prime_UTR
CTAGCCTGTGAGTTATTACA+CGG 0.608774 2_4:+33788352 Msa0325800:three_prime_UTR
GAGACTGAACAAAACACCAC+CGG 0.610159 2_4:-33785542 None:intergenic
CCGAAGGAAGGAGGAAGCGA+CGG 0.611461 2_4:-33784442 None:intergenic
TTTATGAGCACTTACCCGGA+TGG 0.612291 2_4:+33786352 Msa0325800:three_prime_UTR
TAAATCAGTGTTATCTCACA+AGG 0.615512 2_4:-33788470 None:intergenic
TGACCCACTTTGGCTATGGG+AGG 0.621045 2_4:+33786577 Msa0325800:three_prime_UTR
GGCGAGAAAGGAATCCCTGA+TGG 0.621367 2_4:+33784786 Msa0325800:CDS
ACTCATCCTGGTAGTAACAA+AGG 0.622316 2_4:-33785849 None:intergenic
CGTGTAATAACTCACAGGCT+AGG 0.622510 2_4:-33788351 None:intergenic
GAACCAGCGTCACGCCATCA+GGG 0.622554 2_4:-33784800 None:intergenic
CTTGCCGTGTAATAACTCAC+AGG 0.626253 2_4:-33788356 None:intergenic
CAAAGTGGGTCATAACCAGT+TGG 0.629322 2_4:-33786566 None:intergenic
AATGTGGGATCCTTCTCTTG+AGG 0.629331 2_4:+33786175 Msa0325800:three_prime_UTR
CGAGATCTTGTGACGAACGA+CGG 0.638975 2_4:-33784506 None:intergenic
CTGTACAAAGTTTATCACAT+TGG 0.639047 2_4:-33787796 None:intergenic
TTGACATCTAAGACAGACAA+GGG 0.639749 2_4:+33785238 Msa0325800:three_prime_UTR
TGCTAACAACCACCTAGAGA+CGG 0.641462 2_4:-33784567 None:intergenic
TGATTCCAGAGGTGTTGCAG+AGG 0.641649 2_4:+33788268 Msa0325800:three_prime_UTR
AAGGAAGGAGGAAGCGACGG+TGG 0.642914 2_4:-33784439 None:intergenic
ATGTAGATCCACGAAGATGG+TGG 0.643154 2_4:+33784393 Msa0325800:CDS
ATCGACAAGGAGACCAAACA+GGG 0.645643 2_4:-33784468 None:intergenic
GGAGTGCACCAGGAAGCAAA+GGG 0.648154 2_4:+33785797 Msa0325800:three_prime_UTR
TCATTATTAAGAATTTGACA+TGG 0.649138 2_4:-33785889 None:intergenic
TGCAAGTGTCTACAAACACA+TGG 0.653659 2_4:+33787743 Msa0325800:three_prime_UTR
CATCGTTCGCCGTCTCTAGG+TGG 0.655761 2_4:+33784558 Msa0325800:CDS
GTAATAACTCACAGGCTAGG+TGG 0.658204 2_4:-33788348 None:intergenic
AAACATACACTAACATCATG+GGG 0.662611 2_4:-33788517 None:intergenic
CATCCTCCCATAGCCAAAGT+GGG 0.663163 2_4:-33786580 None:intergenic
ATATAGAGAGAATTTAAATG+GGG 0.666231 2_4:+33788621 Msa0325800:three_prime_UTR
GCGTCTCTGATAAGTGCACA+GGG 0.673628 2_4:+33788309 Msa0325800:three_prime_UTR
TGACGTGATATGGTATGCAG+AGG 0.675040 2_4:+33784765 Msa0325800:CDS
AGAACAGTTGAAAATCGACA+AGG 0.693648 2_4:-33784481 None:intergenic
AGTAGAAGCCTGATGAACCA+CGG 0.701660 2_4:-33786320 None:intergenic
TTTGACATCTAAGACAGACA+AGG 0.726090 2_4:+33785237 Msa0325800:three_prime_UTR
CGATGACGAGATCTGTACGA+CGG 0.734992 2_4:-33784540 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAATAAAAATAAAAATA+AGG + chr2_4:33784260-33784279 Msa0325800:intron 0.0%
!! TAAAATAAAAATAAAAATAA+GGG + chr2_4:33784261-33784280 Msa0325800:intron 0.0%
!!! ATGTAAAATAGATTTTAAAT+GGG - chr2_4:33784241-33784260 None:intergenic 10.0%
!!! AATGTAAAATAGATTTTAAA+TGG - chr2_4:33784242-33784261 None:intergenic 10.0%
!!! TGTAAAATAGATTTTAAATG+GGG - chr2_4:33784240-33784259 None:intergenic 15.0%
!!! AAAATTTTATTTTAGAGAGA+AGG - chr2_4:33784308-33784327 None:intergenic 15.0%
!!! ATTTTTTTATTTTACTGATG+AGG + chr2_4:33785312-33785331 Msa0325800:three_prime_UTR 15.0%
!! AATTTGAACTTAGTATATTA+TGG + chr2_4:33786081-33786100 Msa0325800:three_prime_UTR 15.0%
!!! ATTTTCAAAGTATCTTAATT+TGG + chr2_4:33787018-33787037 Msa0325800:three_prime_UTR 15.0%
!! TTAGTTATTAGTATAAATGA+GGG - chr2_4:33787201-33787220 None:intergenic 15.0%
!! AAAGTATAAATAATTCAACA+AGG + chr2_4:33787511-33787530 Msa0325800:intron 15.0%
!!! TGTAATTTAAAGTTTGTTTT+TGG + chr2_4:33787685-33787704 Msa0325800:intron 15.0%
!!! TTTTTATTTGAATTTTCTGA+AGG + chr2_4:33787872-33787891 Msa0325800:intron 15.0%
!!! TTTTATTTGAATTTTCTGAA+GGG + chr2_4:33787873-33787892 Msa0325800:intron 15.0%
!! AATTGAATAAGTTATTTGAT+TGG - chr2_4:33788211-33788230 None:intergenic 15.0%
!! AAATATAGAGAGAATTTAAA+TGG + chr2_4:33788619-33788638 Msa0325800:three_prime_UTR 15.0%
!! AATATAGAGAGAATTTAAAT+GGG + chr2_4:33788620-33788639 Msa0325800:three_prime_UTR 15.0%
!! AAAAATCTTGGAATTTAAAT+CGG - chr2_4:33788651-33788670 None:intergenic 15.0%
!! AAAAAACACATATTAACTCA+AGG + chr2_4:33784130-33784149 Msa0325800:intron 20.0%
!! AGTACTAGTAAAAATGTATA+AGG + chr2_4:33785037-33785056 Msa0325800:intron 20.0%
!!! AAAGTATGTGATTTTGTAAA+TGG + chr2_4:33785424-33785443 Msa0325800:three_prime_UTR 20.0%
!! ATTCAGATTCCATTTAAAAA+GGG - chr2_4:33785749-33785768 None:intergenic 20.0%
!! AATTCAGATTCCATTTAAAA+AGG - chr2_4:33785750-33785769 None:intergenic 20.0%
!! TCATTATTAAGAATTTGACA+TGG - chr2_4:33785892-33785911 None:intergenic 20.0%
!! CTTTAATTGTAAACTCTAAT+TGG - chr2_4:33785933-33785952 None:intergenic 20.0%
!! ATTAGAGTTTACAATTAAAG+TGG + chr2_4:33785933-33785952 Msa0325800:three_prime_UTR 20.0%
!! TTAGAGTTTACAATTAAAGT+GGG + chr2_4:33785934-33785953 Msa0325800:three_prime_UTR 20.0%
!!! GCTGATTTATATTTATATTC+AGG - chr2_4:33785985-33786004 None:intergenic 20.0%
!! AATAGAACAGTTAAGAAAAA+AGG - chr2_4:33786021-33786040 None:intergenic 20.0%
!!! TTTTTTCTTAACTGTTCTAT+TGG + chr2_4:33786020-33786039 Msa0325800:three_prime_UTR 20.0%
!! ATATTATGGTTCAAGATTAA+AGG + chr2_4:33786095-33786114 Msa0325800:three_prime_UTR 20.0%
!!! TACCTTTTGTCAATATTTAA+GGG - chr2_4:33786212-33786231 None:intergenic 20.0%
!!! TTACCTTTTGTCAATATTTA+AGG - chr2_4:33786213-33786232 None:intergenic 20.0%
!! AAATATTGACAAAAGGTAAT+TGG + chr2_4:33786214-33786233 Msa0325800:intron 20.0%
!! TTCACAAATATTAATCCAAT+AGG - chr2_4:33786275-33786294 None:intergenic 20.0%
!! ATTGGATTAATATTTGTGAA+TGG + chr2_4:33786275-33786294 Msa0325800:intron 20.0%
!!! ATTTTGATATTAGTGAAACA+AGG + chr2_4:33786379-33786398 Msa0325800:three_prime_UTR 20.0%
!!! ACTTTTATTTATGTTGAAGA+TGG + chr2_4:33786432-33786451 Msa0325800:intron 20.0%
!! TATAAACTTGGTTGTTAAAT+TGG - chr2_4:33786489-33786508 None:intergenic 20.0%
!! AATTTAACAACCAAGTTTAT+AGG + chr2_4:33786488-33786507 Msa0325800:intron 20.0%
!! GAATTGAGATAAATATATAC+AGG - chr2_4:33786542-33786561 None:intergenic 20.0%
!! GTATATATTTATCTCAATTC+TGG + chr2_4:33786542-33786561 Msa0325800:three_prime_UTR 20.0%
!!! AGGTTTTTAATTTGCATTAT+CGG + chr2_4:33786867-33786886 Msa0325800:intron 20.0%
!! TTTATCATTTGAATTTGTGT+AGG + chr2_4:33787103-33787122 Msa0325800:intron 20.0%
!! TATGATTGGATATGATAAAT+TGG + chr2_4:33787159-33787178 Msa0325800:intron 20.0%
!! CTTAGTTATTAGTATAAATG+AGG - chr2_4:33787202-33787221 None:intergenic 20.0%
!!! ATTTAAAGTTTGTTTTTGGT+TGG + chr2_4:33787689-33787708 Msa0325800:intron 20.0%
!!! GTTGTTCATATGATTATTTT+TGG + chr2_4:33787989-33788008 Msa0325800:intron 20.0%
!!! ATTTTTTTACCCTTTTATGT+AGG + chr2_4:33788228-33788247 Msa0325800:intron 20.0%
!!! GTTTTATTATTGTAATCTGT+AGG + chr2_4:33788386-33788405 Msa0325800:three_prime_UTR 20.0%
!! TTGAATTTATTGTAATCTGT+AGG + chr2_4:33788420-33788439 Msa0325800:three_prime_UTR 20.0%
!!! TTTTTTATTAGAACTGATGT+TGG + chr2_4:33788537-33788556 Msa0325800:three_prime_UTR 20.0%
!! ATATAGAGAGAATTTAAATG+GGG + chr2_4:33788621-33788640 Msa0325800:three_prime_UTR 20.0%
!! ATTAACTCAAGGATTTTAAG+TGG + chr2_4:33784141-33784160 Msa0325800:intron 25.0%
!!! TTAACTCAAGGATTTTAAGT+GGG + chr2_4:33784142-33784161 Msa0325800:intron 25.0%
! AGTGGTTATTTGTTCATTTA+TGG - chr2_4:33785011-33785030 None:intergenic 25.0%
! AAGAAAAATTAAACCTGCTA+TGG - chr2_4:33785130-33785149 None:intergenic 25.0%
!! AATTTTTCTTGTCAGATACT+TGG + chr2_4:33785140-33785159 Msa0325800:three_prime_UTR 25.0%
! ATTTACAAAATGTGTGAACT+GGG - chr2_4:33785393-33785412 None:intergenic 25.0%
! TATAGCAAAAAATCACAAGT+GGG - chr2_4:33785679-33785698 None:intergenic 25.0%
! TAATTGTAAACTCTAATTGG+TGG - chr2_4:33785930-33785949 None:intergenic 25.0%
!! ACCTTTTGTCAATATTTAAG+GGG - chr2_4:33786211-33786230 None:intergenic 25.0%
! GTTTCACTAATATCAAAATC+TGG - chr2_4:33786378-33786397 None:intergenic 25.0%
! TTTATTTATGTTGAAGATGG+TGG + chr2_4:33786435-33786454 Msa0325800:intron 25.0%
!!! TGGCAATGATTTTTTACTTT+TGG + chr2_4:33786455-33786474 Msa0325800:intron 25.0%
!!! TTTTAAAAAATCCTCTAACG+CGG - chr2_4:33786766-33786785 None:intergenic 25.0%
!!! GTTAGAGGATTTTTTAAAAC+CGG + chr2_4:33786767-33786786 Msa0325800:three_prime_UTR 25.0%
!!! ATTTTTTAAAACCGGATCAA+CGG + chr2_4:33786775-33786794 Msa0325800:three_prime_UTR 25.0%
!!! TTTTTCCTAGTTTTTTCTTG+AGG + chr2_4:33786847-33786866 Msa0325800:intron 25.0%
! AAAAACCTCAAGAAAAAACT+AGG - chr2_4:33786855-33786874 None:intergenic 25.0%
!!! GGTTTTTAATTTGCATTATC+GGG + chr2_4:33786868-33786887 Msa0325800:intron 25.0%
! AAATGTCTTCAGATAATTGT+GGG - chr2_4:33786991-33787010 None:intergenic 25.0%
! AAAATGTCTTCAGATAATTG+TGG - chr2_4:33786992-33787011 None:intergenic 25.0%
!!! AAGTTTCAGCTTTAAGAATA+AGG + chr2_4:33787050-33787069 Msa0325800:three_prime_UTR 25.0%
! AAAGACCTTATGATTATGAT+TGG + chr2_4:33787145-33787164 Msa0325800:intron 25.0%
! CATATCCAATCATAATCATA+AGG - chr2_4:33787153-33787172 None:intergenic 25.0%
! CAAAGTATGGTATTTATGAT+AGG - chr2_4:33787477-33787496 None:intergenic 25.0%
! TTTAAATTACAAGACGCTAA+AGG - chr2_4:33787676-33787695 None:intergenic 25.0%
!!! TTGTTTCATTATTTTTCCAG+AGG + chr2_4:33787717-33787736 Msa0325800:intron 25.0%
! AAAACATACACTAACATCAT+GGG - chr2_4:33788521-33788540 None:intergenic 25.0%
! AAAAACATACACTAACATCA+TGG - chr2_4:33788522-33788541 None:intergenic 25.0%
! TGATGTTGGAAATTTATGTA+AGG + chr2_4:33788551-33788570 Msa0325800:three_prime_UTR 25.0%
!!! TGTGTTTTTTGTACTAGTGA+GGG - chr2_4:33784120-33784139 None:intergenic 30.0%
!!! ATGTGTTTTTTGTACTAGTG+AGG - chr2_4:33784121-33784140 None:intergenic 30.0%
!! TGTTTTTAAATCAGGTGGAT+AGG - chr2_4:33784170-33784189 None:intergenic 30.0%
ATCCACCTGATTTAAAAACA+TGG + chr2_4:33784170-33784189 Msa0325800:intron 30.0%
!! ATCCATGTTTTTAAATCAGG+TGG - chr2_4:33784175-33784194 None:intergenic 30.0%
ACCTGATTTAAAAACATGGA+TGG + chr2_4:33784174-33784193 Msa0325800:intron 30.0%
!! TCCATCCATGTTTTTAAATC+AGG - chr2_4:33784178-33784197 None:intergenic 30.0%
TGATTTAAAAACATGGATGG+AGG + chr2_4:33784177-33784196 Msa0325800:intron 30.0%
GATTTAAAAACATGGATGGA+GGG + chr2_4:33784178-33784197 Msa0325800:intron 30.0%
ATTTAAAAACATGGATGGAG+GGG + chr2_4:33784179-33784198 Msa0325800:intron 30.0%
!!! TTAGCAATTTGGTTTTCTTC+AGG + chr2_4:33784584-33784603 Msa0325800:CDS 30.0%
GGTTATTTGTTCATTTATGG+TGG - chr2_4:33785008-33785027 None:intergenic 30.0%
TTTACTAGTACTCAATCAAG+TGG - chr2_4:33785029-33785048 None:intergenic 30.0%
AAAATTAAACCTGCTATGGA+GGG - chr2_4:33785126-33785145 None:intergenic 30.0%
AAAAATTAAACCTGCTATGG+AGG - chr2_4:33785127-33785146 None:intergenic 30.0%
CATTTACAAAATGTGTGAAC+TGG - chr2_4:33785394-33785413 None:intergenic 30.0%
! CAGTTCACACATTTTGTAAA+TGG + chr2_4:33785392-33785411 Msa0325800:three_prime_UTR 30.0%
!! TTGTTTCGTTTTTGCTTTTG+TGG + chr2_4:33785471-33785490 Msa0325800:three_prime_UTR 30.0%
!! TATCATTGGTTGTTTTGTAC+TGG + chr2_4:33785500-33785519 Msa0325800:three_prime_UTR 30.0%
!! ATCATTGGTTGTTTTGTACT+GGG + chr2_4:33785501-33785520 Msa0325800:three_prime_UTR 30.0%
!!! TGCTCTTTTTTATCAGAGAT+TGG + chr2_4:33785600-33785619 Msa0325800:three_prime_UTR 30.0%
!!! GCTCTTTTTTATCAGAGATT+GGG + chr2_4:33785601-33785620 Msa0325800:three_prime_UTR 30.0%
!!! CTCTTTTTTATCAGAGATTG+GGG + chr2_4:33785602-33785621 Msa0325800:three_prime_UTR 30.0%
!!! AACTTGTTACTCTTTTGCAA+TGG + chr2_4:33785633-33785652 Msa0325800:three_prime_UTR 30.0%
CTATAGCAAAAAATCACAAG+TGG - chr2_4:33785680-33785699 None:intergenic 30.0%
! TTGAATAGATTGCTGATTAG+AGG + chr2_4:33785716-33785735 Msa0325800:intron 30.0%
! GGAAACTATCCCTTTTTAAA+TGG + chr2_4:33785737-33785756 Msa0325800:intron 30.0%
TGAATTGAATGTGTAGGTAT+TGG + chr2_4:33785764-33785783 Msa0325800:intron 30.0%
GAATTGAATGTGTAGGTATT+GGG + chr2_4:33785765-33785784 Msa0325800:intron 30.0%
GTAACAAAGGAAAGTAGTAT+TGG - chr2_4:33785839-33785858 None:intergenic 30.0%
AACAGTTAAGAAAAAAGGAG+GGG - chr2_4:33786016-33786035 None:intergenic 30.0%
GAACAGTTAAGAAAAAAGGA+GGG - chr2_4:33786017-33786036 None:intergenic 30.0%
AGAACAGTTAAGAAAAAAGG+AGG - chr2_4:33786018-33786037 None:intergenic 30.0%
CGAAGTTATAGTTCAAAATG+AGG + chr2_4:33786127-33786146 Msa0325800:three_prime_UTR 30.0%
TATAGTTCAAAATGAGGATC+AGG + chr2_4:33786133-33786152 Msa0325800:three_prime_UTR 30.0%
TCCCCTTAAATATTGACAAA+AGG + chr2_4:33786207-33786226 Msa0325800:three_prime_UTR 30.0%
!! TGAATAATGCGTTTTTGAAG+TGG + chr2_4:33786247-33786266 Msa0325800:intron 30.0%
TGTACTGAAACCTATAAACT+TGG - chr2_4:33786501-33786520 None:intergenic 30.0%
AGTTTATAGGTTTCAGTACA+TGG + chr2_4:33786501-33786520 Msa0325800:intron 30.0%
! TCTCTTGTACTTTTCTTGTT+AGG + chr2_4:33786634-33786653 Msa0325800:intron 30.0%
TTTAAAAAATCCTCTAACGC+GGG - chr2_4:33786765-33786784 None:intergenic 30.0%
!!! TTTTTTAAAACCGGATCAAC+GGG + chr2_4:33786776-33786795 Msa0325800:three_prime_UTR 30.0%
!! CTTATTGTTTTGTCAGTTCA+TGG + chr2_4:33786898-33786917 Msa0325800:intron 30.0%
TACAAGCTATTCTTCGAATT+AGG - chr2_4:33786940-33786959 None:intergenic 30.0%
AGTGTCTTGAATTATCTCTT+AGG - chr2_4:33787238-33787257 None:intergenic 30.0%
! TTCCCTTTAAGTCTTATGAA+AGG + chr2_4:33787274-33787293 Msa0325800:intron 30.0%
CTCCTTTCATAAGACTTAAA+GGG - chr2_4:33787279-33787298 None:intergenic 30.0%
ACTCCTTTCATAAGACTTAA+AGG - chr2_4:33787280-33787299 None:intergenic 30.0%
CAATAAACATTTACTCCAAG+TGG + chr2_4:33787347-33787366 Msa0325800:intron 30.0%
TACAGAAAAGACACAAAGTA+TGG - chr2_4:33787490-33787509 None:intergenic 30.0%
CAATATCTCAAAACAAAAGC+TGG - chr2_4:33787584-33787603 None:intergenic 30.0%
CTGTACAAAGTTTATCACAT+TGG - chr2_4:33787799-33787818 None:intergenic 30.0%
CAATGTGATAAACTTTGTAC+AGG + chr2_4:33787797-33787816 Msa0325800:three_prime_UTR 30.0%
AAAATTCCCACCTATTGTTT+GGG + chr2_4:33788049-33788068 Msa0325800:intron 30.0%
CAGTAGTTTCACTAAAGAAT+TGG + chr2_4:33788078-33788097 Msa0325800:intron 30.0%
GCATTTGATAAACTGACATT+TGG + chr2_4:33788125-33788144 Msa0325800:intron 30.0%
! TTTTTACCCTTTTATGTAGG+AGG + chr2_4:33788231-33788250 Msa0325800:intron 30.0%
AAGTAACCTCCTACATAAAA+GGG - chr2_4:33788240-33788259 None:intergenic 30.0%
TATTGTAATCTGTAGGATCT+TGG + chr2_4:33788393-33788412 Msa0325800:three_prime_UTR 30.0%
TATTGTAATCTGTAGGATCT+TGG + chr2_4:33788393-33788412 Msa0325800:three_prime_UTR 30.0%
TAAATCAGTGTTATCTCACA+AGG - chr2_4:33788473-33788492 None:intergenic 30.0%
AAACATACACTAACATCATG+GGG - chr2_4:33788520-33788539 None:intergenic 30.0%
!!! TGTTTTTTGTACTAGTGAGG+GGG - chr2_4:33784118-33784137 None:intergenic 35.0%
!!! GTGTTTTTTGTACTAGTGAG+GGG - chr2_4:33784119-33784138 None:intergenic 35.0%
AGAACAGTTGAAAATCGACA+AGG - chr2_4:33784484-33784503 None:intergenic 35.0%
TCGAACTCTTTCTTTCTGTT+TGG + chr2_4:33784662-33784681 Msa0325800:intron 35.0%
!! CAGTTTCGTTTTTGCTTTTG+TGG + chr2_4:33784708-33784727 Msa0325800:intron 35.0%
!! TTTCGTTTTTGCTTTTGTGG+TGG + chr2_4:33784711-33784730 Msa0325800:CDS 35.0%
AGATGTTGAATGTAAACCCT+TGG - chr2_4:33785088-33785107 None:intergenic 35.0%
! TTCAAACTGCACTTGTCTTT+TGG + chr2_4:33785193-33785212 Msa0325800:three_prime_UTR 35.0%
! TTTGACATCTAAGACAGACA+AGG + chr2_4:33785237-33785256 Msa0325800:three_prime_UTR 35.0%
! TTGACATCTAAGACAGACAA+GGG + chr2_4:33785238-33785257 Msa0325800:three_prime_UTR 35.0%
! AAGACAGACAAGGGATTTTT+CGG + chr2_4:33785247-33785266 Msa0325800:three_prime_UTR 35.0%
! TTTTCGGATTGATCTTGACA+TGG + chr2_4:33785263-33785282 Msa0325800:three_prime_UTR 35.0%
! ACACATTTTGTAAATGGCCA+GGG + chr2_4:33785398-33785417 Msa0325800:three_prime_UTR 35.0%
AAATCACATACTTTGTTCCC+TGG - chr2_4:33785418-33785437 None:intergenic 35.0%
! ATGTGATTTTGTAAATGGCC+AGG + chr2_4:33785429-33785448 Msa0325800:three_prime_UTR 35.0%
! TGTGATTTTGTAAATGGCCA+GGG + chr2_4:33785430-33785449 Msa0325800:three_prime_UTR 35.0%
!! TTTCGTTTTTGCTTTTGTGG+TGG + chr2_4:33784711-33784730 Msa0325800:CDS 35.0%
!!! TTTTTTATCAGAGATTGGGG+TGG + chr2_4:33785605-33785624 Msa0325800:three_prime_UTR 35.0%
TGCAATGGTTCATTACATTC+AGG + chr2_4:33785648-33785667 Msa0325800:three_prime_UTR 35.0%
GGAATCTGAATTGAATGTGT+AGG + chr2_4:33785758-33785777 Msa0325800:intron 35.0%
TACTTTCCTTTGTTACTACC+AGG + chr2_4:33785843-33785862 Msa0325800:three_prime_UTR 35.0%
TAATAGCAAAAGACTCATCC+TGG - chr2_4:33785864-33785883 None:intergenic 35.0%
TTAAGAAAAAAGGAGGGGAT+TGG - chr2_4:33786011-33786030 None:intergenic 35.0%
CAATCTTATAAGTTCGCTTG+AGG + chr2_4:33786043-33786062 Msa0325800:three_prime_UTR 35.0%
AGCTTTCATTCAGAAGAATG+TGG + chr2_4:33786159-33786178 Msa0325800:three_prime_UTR 35.0%
GCTTTCATTCAGAAGAATGT+GGG + chr2_4:33786160-33786179 Msa0325800:three_prime_UTR 35.0%
!!! GTTTTTGAAGTGGTACCTAT+TGG + chr2_4:33786257-33786276 Msa0325800:intron 35.0%
GGAGCAAAATGAATCTGAAA+TGG - chr2_4:33786302-33786321 None:intergenic 35.0%
AATATCAAAATCTGGCCATC+CGG - chr2_4:33786370-33786389 None:intergenic 35.0%
! AGTACATGGAAGAAGGTTTT+TGG + chr2_4:33786515-33786534 Msa0325800:three_prime_UTR 35.0%
ATGGGAGGATGCAAAAATAA+AGG + chr2_4:33786592-33786611 Msa0325800:three_prime_UTR 35.0%
! GAAAAGTACAAGAGACACAT+AGG - chr2_4:33786629-33786648 None:intergenic 35.0%
! CTTGTACTTTTCTTGTTAGG+AGG + chr2_4:33786637-33786656 Msa0325800:intron 35.0%
GGCTGATAGTATAGTACATT+TGG + chr2_4:33786658-33786677 Msa0325800:intron 35.0%
TGATGACAGAAGTTCAAAGT+TGG + chr2_4:33786727-33786746 Msa0325800:three_prime_UTR 35.0%
TTAAAAAATCCTCTAACGCG+GGG - chr2_4:33786764-33786783 None:intergenic 35.0%
!!! TTTTTAAAACCGGATCAACG+GGG + chr2_4:33786777-33786796 Msa0325800:three_prime_UTR 35.0%
! TAGCTTGTAATGTTGCTAAG+AGG + chr2_4:33786951-33786970 Msa0325800:three_prime_UTR 35.0%
TGGATATGATAAATTGGCGA+TGG + chr2_4:33787165-33787184 Msa0325800:intron 35.0%
AAAGGAGTTTGTGCCTTAAT+CGG + chr2_4:33787292-33787311 Msa0325800:intron 35.0%
TTCCTACAATTAACACCACT+TGG - chr2_4:33787365-33787384 None:intergenic 35.0%
! TGACAGCTTTAACTATGTAG+TGG - chr2_4:33787409-33787428 None:intergenic 35.0%
AAATTACAAGACGCTAAAGG+CGG - chr2_4:33787673-33787692 None:intergenic 35.0%
! TTTTCTTTTCCCTTGTACTC+TGG + chr2_4:33787918-33787937 Msa0325800:intron 35.0%
ACCAACTAAAGCAGGTAAAT+AGG - chr2_4:33787949-33787968 None:intergenic 35.0%
CAAAATTCCCACCTATTGTT+TGG + chr2_4:33788048-33788067 Msa0325800:intron 35.0%
! AAACTGACATTTGGAGCTAA+TGG + chr2_4:33788134-33788153 Msa0325800:intron 35.0%
! ATTTGGAGCTAATGGTTCAT+AGG + chr2_4:33788142-33788161 Msa0325800:intron 35.0%
CAAGTAACCTCCTACATAAA+AGG - chr2_4:33788241-33788260 None:intergenic 35.0%
CTTGTTGAATATGATTCCAG+AGG + chr2_4:33788257-33788276 Msa0325800:three_prime_UTR 35.0%
TACATTGCTGATGGAGGATT+TGG - chr2_4:33784378-33784397 None:intergenic 40.0%
CTAGGTGGTTGTTAGCAATT+TGG + chr2_4:33784573-33784592 Msa0325800:CDS 40.0%
!! TTTCTTCAGGTTTTCTTCGC+CGG + chr2_4:33784597-33784616 Msa0325800:CDS 40.0%
AACTAACAAACCCCAAACTC+CGG - chr2_4:33784619-33784638 None:intergenic 40.0%
!! TATCGTCGGTTGTTTTGTAC+TGG + chr2_4:33784737-33784756 Msa0325800:CDS 40.0%
!! ATCGTCGGTTGTTTTGTACT+GGG + chr2_4:33784738-33784757 Msa0325800:CDS 40.0%
AATGTAAACCCTTGGCAACA+GGG - chr2_4:33785080-33785099 None:intergenic 40.0%
! CTGGTTTGAGAGCTAAGATA+AGG + chr2_4:33785286-33785305 Msa0325800:three_prime_UTR 40.0%
TTAGCAAGAGTAAGCATGAG+AGG - chr2_4:33785361-33785380 None:intergenic 40.0%
GCTTACTCTTGCTAATGCTT+TGG + chr2_4:33785366-33785385 Msa0325800:three_prime_UTR 40.0%
! CACACATTTTGTAAATGGCC+AGG + chr2_4:33785397-33785416 Msa0325800:three_prime_UTR 40.0%
! TTTTGTGGTGGCTGTATCAT+TGG + chr2_4:33785486-33785505 Msa0325800:three_prime_UTR 40.0%
! GTTTTGTACTGGGTTCGTTA+TGG + chr2_4:33785511-33785530 Msa0325800:three_prime_UTR 40.0%
!! GTTCGTTATGGTTTGGTTTC+CGG + chr2_4:33785523-33785542 Msa0325800:three_prime_UTR 40.0%
!!! CAGTCTCGGTTGTTTTTTAG+CGG + chr2_4:33785558-33785577 Msa0325800:three_prime_UTR 40.0%
!! GTAGGTATTGGGATCTTGTT+TGG + chr2_4:33785776-33785795 Msa0325800:intron 40.0%
ACTCATCCTGGTAGTAACAA+AGG - chr2_4:33785852-33785871 None:intergenic 40.0%
AGTTCAAAATGAGGATCAGG+TGG + chr2_4:33786136-33786155 Msa0325800:three_prime_UTR 40.0%
ACAAACTTTCCCTCAAGAGA+AGG - chr2_4:33786188-33786207 None:intergenic 40.0%
! TTCAGATTCATTTTGCTCCG+TGG + chr2_4:33786303-33786322 Msa0325800:intron 40.0%
TCATCAGGCTTCTACTCTTA+TGG + chr2_4:33786327-33786346 Msa0325800:three_prime_UTR 40.0%
GGAATTTATGAGCACTTACC+CGG + chr2_4:33786348-33786367 Msa0325800:three_prime_UTR 40.0%
ATATCAAAATCTGGCCATCC+GGG - chr2_4:33786369-33786388 None:intergenic 40.0%
AGGTTTCAGTACATGGAAGA+AGG + chr2_4:33786508-33786527 Msa0325800:intron 40.0%
TATCTCAATTCTGGACCAAC+TGG + chr2_4:33786551-33786570 Msa0325800:three_prime_UTR 40.0%
TTATGACCCACTTTGGCTAT+GGG + chr2_4:33786574-33786593 Msa0325800:three_prime_UTR 40.0%
TCTAACGCGGGGAATAAATA+TGG - chr2_4:33786753-33786772 None:intergenic 40.0%
ATATTTATTCCCCGCGTTAG+AGG + chr2_4:33786752-33786771 Msa0325800:three_prime_UTR 40.0%
GGAGATTACTTGTCTTAGAC+AGG + chr2_4:33786811-33786830 Msa0325800:three_prime_UTR 40.0%
CTTGTCTTAGACAGGTACAA+AGG + chr2_4:33786819-33786838 Msa0325800:intron 40.0%
! AAACACGTTTCCACCGATTA+AGG - chr2_4:33787308-33787327 None:intergenic 40.0%
! CTCCAAGTGGTGTTAATTGT+AGG + chr2_4:33787360-33787379 Msa0325800:intron 40.0%
AAGCTGTCAAAAAACACCTC+AGG + chr2_4:33787420-33787439 Msa0325800:intron 40.0%
TGCAAGTGTCTACAAACACA+TGG + chr2_4:33787743-33787762 Msa0325800:three_prime_UTR 40.0%
GGTAATGAACTGCAAATCTC+TGG + chr2_4:33787818-33787837 Msa0325800:intron 40.0%
GCCTATTTACCTGCTTTAGT+TGG + chr2_4:33787945-33787964 Msa0325800:intron 40.0%
AGTATGCAACCAACTAAAGC+AGG - chr2_4:33787957-33787976 None:intergenic 40.0%
CTAGCCTGTGAGTTATTACA+CGG + chr2_4:33788352-33788371 Msa0325800:three_prime_UTR 40.0%
TAAAAACATGGATGGAGGGG+AGG + chr2_4:33784182-33784201 Msa0325800:intron 45.0%
! TGATGGAGGATTTGGAACAG+GGG - chr2_4:33784370-33784389 None:intergenic 45.0%
! CTGATGGAGGATTTGGAACA+GGG - chr2_4:33784371-33784390 None:intergenic 45.0%
TGGATCTACATTGCTGATGG+AGG - chr2_4:33784384-33784403 None:intergenic 45.0%
TCGTGGATCTACATTGCTGA+TGG - chr2_4:33784387-33784406 None:intergenic 45.0%
GCAATGTAGATCCACGAAGA+TGG + chr2_4:33784390-33784409 Msa0325800:intron 45.0%
ATGTAGATCCACGAAGATGG+TGG + chr2_4:33784393-33784412 Msa0325800:CDS 45.0%
ATCGACAAGGAGACCAAACA+GGG - chr2_4:33784471-33784490 None:intergenic 45.0%
AATCGACAAGGAGACCAAAC+AGG - chr2_4:33784472-33784491 None:intergenic 45.0%
TGCTAACAACCACCTAGAGA+CGG - chr2_4:33784570-33784589 None:intergenic 45.0%
AAGAGTTCGACCACCAAAAC+AGG - chr2_4:33784652-33784671 None:intergenic 45.0%
! TTTTGTGGTGGCTGTATCGT+CGG + chr2_4:33784723-33784742 Msa0325800:CDS 45.0%
TGACGTGATATGGTATGCAG+AGG + chr2_4:33784765-33784784 Msa0325800:CDS 45.0%
! TCGGACTCATTGATTGCATC+AGG + chr2_4:33784821-33784840 Msa0325800:three_prime_UTR 45.0%
CCACTTCGAAACAGGGATAA+CGG - chr2_4:33784891-33784910 None:intergenic 45.0%
CGTTATCCCTGTTTCGAAGT+GGG + chr2_4:33784889-33784908 Msa0325800:intron 45.0%
TGGACGTTGTCTTCAGTTCT+GGG + chr2_4:33784938-33784957 Msa0325800:intron 45.0%
GAATGTAAACCCTTGGCAAC+AGG - chr2_4:33785081-33785100 None:intergenic 45.0%
TGTTTGTTTCCCTCCATAGC+AGG + chr2_4:33785114-33785133 Msa0325800:intron 45.0%
TTGTAAATGGCCAGGGAACA+TGG + chr2_4:33785405-33785424 Msa0325800:three_prime_UTR 45.0%
AGTAAGCATACCATGTTCCC+TGG - chr2_4:33785450-33785469 None:intergenic 45.0%
GTACTGGGTTCGTTATGGTT+TGG + chr2_4:33785516-33785535 Msa0325800:three_prime_UTR 45.0%
GAGACTGAACAAAACACCAC+CGG - chr2_4:33785545-33785564 None:intergenic 45.0%
!! GGTGGTGTTTTGTTCAGTCT+CGG + chr2_4:33785544-33785563 Msa0325800:three_prime_UTR 45.0%
!!! TCTCGGTTGTTTTTTAGCGG+TGG + chr2_4:33785561-33785580 Msa0325800:three_prime_UTR 45.0%
TCAAAGATCCCTTTGCTTCC+TGG - chr2_4:33785808-33785827 None:intergenic 45.0%
AATGTGGGATCCTTCTCTTG+AGG + chr2_4:33786175-33786194 Msa0325800:three_prime_UTR 45.0%
ATGTGGGATCCTTCTCTTGA+GGG + chr2_4:33786176-33786195 Msa0325800:three_prime_UTR 45.0%
! ATTTTGCTCCGTGGTTCATC+AGG + chr2_4:33786312-33786331 Msa0325800:three_prime_UTR 45.0%
AGTAGAAGCCTGATGAACCA+CGG - chr2_4:33786323-33786342 None:intergenic 45.0%
TTTATGAGCACTTACCCGGA+TGG + chr2_4:33786352-33786371 Msa0325800:three_prime_UTR 45.0%
CAAAGTGGGTCATAACCAGT+TGG - chr2_4:33786569-33786588 None:intergenic 45.0%
CAACTGGTTATGACCCACTT+TGG + chr2_4:33786567-33786586 Msa0325800:three_prime_UTR 45.0%
GTTATGACCCACTTTGGCTA+TGG + chr2_4:33786573-33786592 Msa0325800:three_prime_UTR 45.0%
CAAAAAACACCTCAGGAGAG+AGG + chr2_4:33787427-33787446 Msa0325800:intron 45.0%
ATACTTAGTCCTCTCTCCTG+AGG - chr2_4:33787439-33787458 None:intergenic 45.0%
TAGGCTTTGCCAGAGTACAA+GGG - chr2_4:33787930-33787949 None:intergenic 45.0%
ATAGGCTTTGCCAGAGTACA+AGG - chr2_4:33787931-33787950 None:intergenic 45.0%
TTCCCACCTATTGTTTGGGA+TGG + chr2_4:33788053-33788072 Msa0325800:intron 45.0%
CACCATCCCAAACAATAGGT+GGG - chr2_4:33788058-33788077 None:intergenic 45.0%
ACTGCACCATCCCAAACAAT+AGG - chr2_4:33788062-33788081 None:intergenic 45.0%
GTAATAACTCACAGGCTAGG+TGG - chr2_4:33788351-33788370 None:intergenic 45.0%
CGTGTAATAACTCACAGGCT+AGG - chr2_4:33788354-33788373 None:intergenic 45.0%
CTTGCCGTGTAATAACTCAC+AGG - chr2_4:33788359-33788378 None:intergenic 45.0%
CTGTGAGTTATTACACGGCA+AGG + chr2_4:33788357-33788376 Msa0325800:three_prime_UTR 45.0%
!! CGGTACGGGTTTTAGTGAGA+AGG - chr2_4:33784336-33784355 None:intergenic 50.0%
TTGGAACAGGGGAGGAGTTA+CGG - chr2_4:33784359-33784378 None:intergenic 50.0%
! GCTGATGGAGGATTTGGAAC+AGG - chr2_4:33784372-33784391 None:intergenic 50.0%
CGAGATCTTGTGACGAACGA+CGG - chr2_4:33784509-33784528 None:intergenic 50.0%
CGATGACGAGATCTGTACGA+CGG - chr2_4:33784543-33784562 None:intergenic 50.0%
! AGGTTTTCTTCGCCGGAGTT+TGG + chr2_4:33784604-33784623 Msa0325800:CDS 50.0%
! GGTTTTCTTCGCCGGAGTTT+GGG + chr2_4:33784605-33784624 Msa0325800:CDS 50.0%
! GTTTTCTTCGCCGGAGTTTG+GGG + chr2_4:33784606-33784625 Msa0325800:CDS 50.0%
AGTTCGACCACCAAAACAGG+AGG - chr2_4:33784649-33784668 None:intergenic 50.0%
ACTGGGTTCGTGACGTGATA+TGG + chr2_4:33784755-33784774 Msa0325800:CDS 50.0%
ATGGTATGCAGAGGCGAGAA+AGG + chr2_4:33784774-33784793 Msa0325800:CDS 50.0%
CCGTTATCCCTGTTTCGAAG+TGG + chr2_4:33784888-33784907 Msa0325800:intron 50.0%
TCCCTGTTTCGAAGTGGGAT+TGG + chr2_4:33784894-33784913 Msa0325800:intron 50.0%
GCCAATCCCACTTCGAAACA+GGG - chr2_4:33784898-33784917 None:intergenic 50.0%
TCCAGTAGCAGGCATAAAGC+AGG - chr2_4:33784922-33784941 None:intergenic 50.0%
TGAAGACAACGTCCAGTAGC+AGG - chr2_4:33784933-33784952 None:intergenic 50.0%
CTGGACGTTGTCTTCAGTTC+TGG + chr2_4:33784937-33784956 Msa0325800:intron 50.0%
GGACGTTGTCTTCAGTTCTG+GGG + chr2_4:33784939-33784958 Msa0325800:intron 50.0%
TAGATGCATCCCTGTTGCCA+AGG + chr2_4:33785068-33785087 Msa0325800:intron 50.0%
AGATGCATCCCTGTTGCCAA+GGG + chr2_4:33785069-33785088 Msa0325800:intron 50.0%
CGGATTGATCTTGACATGGC+TGG + chr2_4:33785267-33785286 Msa0325800:three_prime_UTR 50.0%
!! CGTTATGGTTTGGTTTCCGG+TGG + chr2_4:33785526-33785545 Msa0325800:three_prime_UTR 50.0%
! GATCTTGTTTGGAGTGCACC+AGG + chr2_4:33785787-33785806 Msa0325800:three_prime_UTR 50.0%
CATCCTCCCATAGCCAAAGT+GGG - chr2_4:33786583-33786602 None:intergenic 50.0%
ATCAACGGGGCAACGTTAGT+GGG + chr2_4:33786790-33786809 Msa0325800:three_prime_UTR 50.0%
GGAGTTTGTGCCTTAATCGG+TGG + chr2_4:33787295-33787314 Msa0325800:intron 50.0%
GCACCATCCCAAACAATAGG+TGG - chr2_4:33788059-33788078 None:intergenic 50.0%
!! TGATTCCAGAGGTGTTGCAG+AGG + chr2_4:33788268-33788287 Msa0325800:three_prime_UTR 50.0%
TGCGTCTCTGATAAGTGCAC+AGG + chr2_4:33788308-33788327 Msa0325800:three_prime_UTR 50.0%
GCGTCTCTGATAAGTGCACA+GGG + chr2_4:33788309-33788328 Msa0325800:three_prime_UTR 50.0%
! TGGAGGATTTGGAACAGGGG+AGG - chr2_4:33784367-33784386 None:intergenic 55.0%
TCGTCACACCACCATCTTCG+TGG - chr2_4:33784404-33784423 None:intergenic 55.0%
TCGACCACCAAAACAGGAGG+TGG - chr2_4:33784646-33784665 None:intergenic 55.0%
GGCGAGAAAGGAATCCCTGA+TGG + chr2_4:33784786-33784805 Msa0325800:CDS 55.0%
CGCCAATCCCACTTCGAAAC+AGG - chr2_4:33784899-33784918 None:intergenic 55.0%
GCCTGCTTTATGCCTGCTAC+TGG + chr2_4:33784918-33784937 Msa0325800:intron 55.0%
TGGAGTGCACCAGGAAGCAA+AGG + chr2_4:33785796-33785815 Msa0325800:three_prime_UTR 55.0%
GGAGTGCACCAGGAAGCAAA+GGG + chr2_4:33785797-33785816 Msa0325800:three_prime_UTR 55.0%
TGACCCACTTTGGCTATGGG+AGG + chr2_4:33786577-33786596 Msa0325800:three_prime_UTR 55.0%
GCATCCTCCCATAGCCAAAG+TGG - chr2_4:33786584-33786603 None:intergenic 55.0%
CTAACGTTGCCCCGTTGATC+CGG - chr2_4:33786789-33786808 None:intergenic 55.0%
GATCAACGGGGCAACGTTAG+TGG + chr2_4:33786789-33786808 Msa0325800:three_prime_UTR 55.0%
GTAGACACTTGCAGAGCCTC+TGG - chr2_4:33787736-33787755 None:intergenic 55.0%
TAGTGCCTCTGCAACACCTC+TGG - chr2_4:33788276-33788295 None:intergenic 55.0%
GAACAGGGGAGGAGTTACGG+CGG - chr2_4:33784356-33784375 None:intergenic 60.0%
AAGGAAGGAGGAAGCGACGG+TGG - chr2_4:33784442-33784461 None:intergenic 60.0%
CCGAAGGAAGGAGGAAGCGA+CGG - chr2_4:33784445-33784464 None:intergenic 60.0%
CCGTCGCTTCCTCCTTCCTT+CGG + chr2_4:33784442-33784461 Msa0325800:CDS 60.0%
CAAACAGGGACGCCGAAGGA+AGG - chr2_4:33784457-33784476 None:intergenic 60.0%
CTTCCTTCGGCGTCCCTGTT+TGG + chr2_4:33784455-33784474 Msa0325800:CDS 60.0%
AGACCAAACAGGGACGCCGA+AGG - chr2_4:33784461-33784480 None:intergenic 60.0%
CGTCATCGTTCGCCGTCTCT+AGG + chr2_4:33784555-33784574 Msa0325800:CDS 60.0%
CATCGTTCGCCGTCTCTAGG+TGG + chr2_4:33784558-33784577 Msa0325800:CDS 60.0%
! GTTCGCGCCACCTCCTGTTT+TGG + chr2_4:33784636-33784655 Msa0325800:intron 60.0%
! AATCCCTGATGGCGTGACGC+TGG + chr2_4:33784797-33784816 Msa0325800:exon 60.0%
GAACCAGCGTCACGCCATCA+GGG - chr2_4:33784803-33784822 None:intergenic 60.0%
! CTGATGGCGTGACGCTGGTT+CGG + chr2_4:33784802-33784821 Msa0325800:exon 60.0%
GGGAGGAGTTACGGCGGTAC+GGG - chr2_4:33784350-33784369 None:intergenic 65.0%
GGGGAGGAGTTACGGCGGTA+CGG - chr2_4:33784351-33784370 None:intergenic 65.0%
AGGAGGAAGCGACGGTGGTG+CGG - chr2_4:33784437-33784456 None:intergenic 65.0%
ACAGGGACGCCGAAGGAAGG+AGG - chr2_4:33784454-33784473 None:intergenic 65.0%
!! CGCGCCACCTCCTGTTTTGG+TGG + chr2_4:33784639-33784658 Msa0325800:intron 65.0%
CGAACCAGCGTCACGCCATC+AGG - chr2_4:33784804-33784823 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 33784112 33788675 33784112 ID=Msa0325800;Name=Msa0325800
chr2_4 mRNA 33784112 33788675 33784112 ID=Msa0325800-mRNA-1;Parent=Msa0325800;Name=Msa0325800-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.8|0.81|0.90|0.4|0.45|11|2009|117
chr2_4 exon 33784112 33784125 33784112 ID=Msa0325800-mRNA-1:exon:10849;Parent=Msa0325800-mRNA-1
chr2_4 exon 33784391 33784627 33784391 ID=Msa0325800-mRNA-1:exon:10850;Parent=Msa0325800-mRNA-1
chr2_4 exon 33784711 33784842 33784711 ID=Msa0325800-mRNA-1:exon:10851;Parent=Msa0325800-mRNA-1
chr2_4 exon 33785133 33785669 33785133 ID=Msa0325800-mRNA-1:exon:10852;Parent=Msa0325800-mRNA-1
chr2_4 exon 33785780 33786228 33785780 ID=Msa0325800-mRNA-1:exon:10853;Parent=Msa0325800-mRNA-1
chr2_4 exon 33786308 33786424 33786308 ID=Msa0325800-mRNA-1:exon:10854;Parent=Msa0325800-mRNA-1
chr2_4 exon 33786510 33786613 33786510 ID=Msa0325800-mRNA-1:exon:10855;Parent=Msa0325800-mRNA-1
chr2_4 exon 33786726 33786832 33786726 ID=Msa0325800-mRNA-1:exon:10856;Parent=Msa0325800-mRNA-1
chr2_4 exon 33786914 33787071 33786914 ID=Msa0325800-mRNA-1:exon:10857;Parent=Msa0325800-mRNA-1
chr2_4 exon 33787737 33787818 33787737 ID=Msa0325800-mRNA-1:exon:10858;Parent=Msa0325800-mRNA-1
chr2_4 exon 33788250 33788675 33788250 ID=Msa0325800-mRNA-1:exon:10859;Parent=Msa0325800-mRNA-1
chr2_4 CDS 33784112 33784125 33784112 ID=Msa0325800-mRNA-1:cds;Parent=Msa0325800-mRNA-1
chr2_4 CDS 33784391 33784627 33784391 ID=Msa0325800-mRNA-1:cds;Parent=Msa0325800-mRNA-1
chr2_4 CDS 33784711 33784813 33784711 ID=Msa0325800-mRNA-1:cds;Parent=Msa0325800-mRNA-1
chr2_4 three_prime_UTR 33784814 33784842 33784814 ID=Msa0325800-mRNA-1:three_prime_utr;Parent=Msa0325800-mRNA-1
chr2_4 three_prime_UTR 33785133 33785669 33785133 ID=Msa0325800-mRNA-1:three_prime_utr;Parent=Msa0325800-mRNA-1
chr2_4 three_prime_UTR 33785780 33786228 33785780 ID=Msa0325800-mRNA-1:three_prime_utr;Parent=Msa0325800-mRNA-1
chr2_4 three_prime_UTR 33786308 33786424 33786308 ID=Msa0325800-mRNA-1:three_prime_utr;Parent=Msa0325800-mRNA-1
chr2_4 three_prime_UTR 33786510 33786613 33786510 ID=Msa0325800-mRNA-1:three_prime_utr;Parent=Msa0325800-mRNA-1
chr2_4 three_prime_UTR 33786726 33786832 33786726 ID=Msa0325800-mRNA-1:three_prime_utr;Parent=Msa0325800-mRNA-1
chr2_4 three_prime_UTR 33786914 33787071 33786914 ID=Msa0325800-mRNA-1:three_prime_utr;Parent=Msa0325800-mRNA-1
chr2_4 three_prime_UTR 33787737 33787818 33787737 ID=Msa0325800-mRNA-1:three_prime_utr;Parent=Msa0325800-mRNA-1
chr2_4 three_prime_UTR 33788250 33788675 33788250 ID=Msa0325800-mRNA-1:three_prime_utr;Parent=Msa0325800-mRNA-1
Gene Sequence

>Msa0325800

ATGCCCCCTCACTACAATGTAGATCCACGAAGATGGTGGTGTGACGAGAGTTGTTCTCCGCACCACCGTCGCTTCCTCCTTCCTTCGGCGTCCCTGTTTGGTCTCCTTGTCGATTTTCAACTGTTCTCGCCGTCGTTCGTCACAAGATCTCGTCTTCGTTTGTCCGTCGTACAGATCTCGTCATCGTTCGCCGTCTCTAGGTGGTTGTTAGCAATTTGGTTTTCTTCAGGTTTTCTTCGCCGGAGTTTGGGTTTCGTTTTTGCTTTTGTGGTGGCTGTATCGTCGGTTGTTTTGTACTGGGTTCGTGACGTGATATGGTATGCAGAGGCGAGAAAGGAATCCCTGATGGCGTGA
Protein sequence

>Msa0325800

MPPHYNVDPRRWWCDESCSPHHRRFLLPSASLFGLLVDFQLFSPSFVTRSRLRLSVVQISSSFAVSRWLLAIWFSSGFLRRSLGFVFAFVVAVSSVVLYWVRDVIWYAEARKESLMA*