AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0180500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 64 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGGAAGCTTCATAATATT+TGG 0.159291 1_4:+68463121 None:intergenic
AGTTTGTTGTCATAAATTTA+AGG 0.254840 1_4:+68463103 None:intergenic
GGAAGTTCAGTTGCTGGTTT+TGG 0.280673 1_4:-68463890 Msa0180500:CDS
CTACAACTGCTCAGATAATA+TGG 0.295331 1_4:-68463076 Msa0180500:three_prime_UTR
TTATTGAGTTAAAACCTAAA+AGG 0.315643 1_4:-68462722 Msa0180500:three_prime_UTR
TCTCTTGGAAGTTCAGTTGC+TGG 0.316900 1_4:-68463896 Msa0180500:CDS
GGCTGCTGTCATGGTTCTCT+TGG 0.318037 1_4:-68463911 Msa0180500:CDS
CATTCTCACATTTGGTTTGA+AGG 0.318868 1_4:-68462481 Msa0180500:three_prime_UTR
ATGGAGTTCTAGAAGTTGTT+AGG 0.337962 1_4:-68463057 Msa0180500:three_prime_UTR
GTATGAAACATTAATTTAGA+TGG 0.342724 1_4:-68462665 Msa0180500:three_prime_UTR
CAATAAGAATGACATGGTTC+TGG 0.357804 1_4:-68462408 Msa0180500:three_prime_UTR
TTTGACTCCATTCTCACATT+TGG 0.369337 1_4:-68462489 Msa0180500:three_prime_UTR
CAGTCTCAGAAAGCAGAATC+TGG 0.377300 1_4:+68463015 None:intergenic
TTCTGAGACTGATGCATGTC+AGG 0.379849 1_4:-68463003 Msa0180500:three_prime_UTR
TCTCTTGTAGTCTCATTCAT+AGG 0.391699 1_4:+68462265 None:intergenic
TTTATAACCTGTACCTAGTT+AGG 0.399847 1_4:-68462801 Msa0180500:three_prime_UTR
GGTCGGCGGTTGCAGCTGTT+TGG 0.403517 1_4:-68463847 Msa0180500:CDS
GATTCAAATAGCTAGGGAAT+TGG 0.428291 1_4:-68463728 Msa0180500:three_prime_UTR
GAGGTGTTGGAACAAAGTTC+TGG 0.428819 1_4:-68463370 Msa0180500:intron
TAGAAGTTGTTAGGATTTCA+AGG 0.435463 1_4:-68463048 Msa0180500:three_prime_UTR
AGCTAGGGAATTGGTAGATT+AGG 0.445650 1_4:-68463719 Msa0180500:intron
CTTCAAACCAAATGTGAGAA+TGG 0.457109 1_4:+68462482 None:intergenic
ATGTCATTCTTATTGTCATC+GGG 0.459221 1_4:+68462416 None:intergenic
CTACAATTAACTACACATCT+TGG 0.461195 1_4:-68462448 Msa0180500:three_prime_UTR
ACAGCGATGAAGGTGCTTGA+TGG 0.463862 1_4:+68462978 None:intergenic
TGCTGTTCTAGGAGGGAAAA+GGG 0.486523 1_4:-68463754 Msa0180500:exon
GTTCTAGGAGGGAAAAGGGT+TGG 0.489920 1_4:-68463750 Msa0180500:exon
ACTTTGCGAAACAGCGATGA+AGG 0.492585 1_4:+68462968 None:intergenic
GACATTTGACGCAAGTAAAA+CGG 0.492766 1_4:-68462182 Msa0180500:three_prime_UTR
ATTAATGTTTCATACGATGT+TGG 0.494860 1_4:+68462673 None:intergenic
TTGCTGTTCTAGGAGGGAAA+AGG 0.496052 1_4:-68463755 Msa0180500:exon
TATAGTGCACCAACGAAAAG+TGG 0.498962 1_4:+68463404 None:intergenic
GGTGGTTTCGGCTGCTGTCA+TGG 0.499140 1_4:-68463920 Msa0180500:CDS
TGACATGGTTCTGGAAATAG+AGG 0.500760 1_4:-68462399 Msa0180500:intron
TGAATATGAAGTGGAAACAA+TGG 0.502809 1_4:-68462225 Msa0180500:three_prime_UTR
ACAAAACTGTATCTTTGAGC+AGG 0.508311 1_4:-68462910 Msa0180500:three_prime_UTR
AACTCGAGAATCTAGTTTAG+CGG 0.509342 1_4:+68462144 None:intergenic
AGGGTTGGATTCAAATAGCT+AGG 0.510738 1_4:-68463735 Msa0180500:three_prime_UTR
CATGTCATTCTTATTGTCAT+CGG 0.515243 1_4:+68462415 None:intergenic
TACTCACAGAAGAGAGGTGT+TGG 0.518746 1_4:-68463383 Msa0180500:three_prime_UTR
ACTGTATCTTTGAGCAGGGC+AGG 0.521107 1_4:-68462905 Msa0180500:three_prime_UTR
CTTGTAGTCTCATTCATAGG+AGG 0.542751 1_4:+68462268 None:intergenic
ATGTTTCATACGATGTTGGA+AGG 0.544469 1_4:+68462677 None:intergenic
GGTTGCCGACTGGCATCTAG+AGG 0.548162 1_4:-68463869 Msa0180500:CDS
GTTGTTAGGATTTCAAGGGA+TGG 0.556184 1_4:-68463043 Msa0180500:three_prime_UTR
CCAACTTGGTACATTTCAGA+AGG 0.560788 1_4:+68462937 None:intergenic
TGTGTCTCTACTGCCTAACT+AGG 0.561963 1_4:+68462788 None:intergenic
TCTACTGCCTAACTAGGTAC+AGG 0.565223 1_4:+68462794 None:intergenic
CCTTCTGAAATGTACCAAGT+TGG 0.566723 1_4:-68462937 Msa0180500:three_prime_UTR
AGAAGTTGTTAGGATTTCAA+GGG 0.583374 1_4:-68463047 Msa0180500:three_prime_UTR
CAACTTGGTACATTTCAGAA+GGG 0.589447 1_4:+68462938 None:intergenic
CAAAACTGTATCTTTGAGCA+GGG 0.601758 1_4:-68462909 Msa0180500:three_prime_UTR
GTTGCCGACTGGCATCTAGA+GGG 0.613589 1_4:-68463868 Msa0180500:CDS
GGGTTGGATTCAAATAGCTA+GGG 0.615232 1_4:-68463734 Msa0180500:three_prime_UTR
CGATGACAATAAGAATGACA+TGG 0.621449 1_4:-68462414 Msa0180500:three_prime_UTR
CCGACTGGCATCTAGAGGGT+CGG 0.622077 1_4:-68463864 Msa0180500:CDS
AATATGAGATGAATATGAAG+TGG 0.624009 1_4:-68462234 Msa0180500:three_prime_UTR
AGTTAAGAAAAGTCAAGTCA+AGG 0.629073 1_4:+68462759 None:intergenic
TGAATCTAGAACAGAGCTGT+CGG 0.629591 1_4:-68464253 Msa0180500:intron
AAACCTAAAAGGAATCGAGA+TGG 0.635088 1_4:-68462711 Msa0180500:three_prime_UTR
ACTGGCATCTAGAGGGTCGG+CGG 0.669702 1_4:-68463861 Msa0180500:CDS
GCACTATACTCACAGAAGAG+AGG 0.681055 1_4:-68463389 Msa0180500:three_prime_UTR
CCGACCCTCTAGATGCCAGT+CGG 0.682970 1_4:+68463864 None:intergenic
GCTATGCAGCGAATAAAGTG+AGG 0.697923 1_4:+68463143 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGAGAAATTTATAATCTA+TGG + chr1_4:68462254-68462273 None:intergenic 15.0%
!!! ATATATTTTATATCATTGGT+TGG - chr1_4:68462301-68462320 Msa0180500:intron 15.0%
!! TTAATAAAAAAAAGTCCATT+TGG - chr1_4:68462847-68462866 Msa0180500:three_prime_UTR 15.0%
!! AATTAAATTAATGTACCAAA+TGG + chr1_4:68462865-68462884 None:intergenic 15.0%
!!! TAATTTAATTTCCAATTATG+AGG - chr1_4:68462875-68462894 Msa0180500:three_prime_UTR 15.0%
!! CATTAGTGATAAAAAAAATT+AGG + chr1_4:68464088-68464107 None:intergenic 15.0%
!! TAAGAGAAATTTATAATCTA+TGG + chr1_4:68462254-68462273 None:intergenic 15.0%
!!! ATATATTTTATATCATTGGT+TGG - chr1_4:68462301-68462320 Msa0180500:intron 15.0%
!! TTAATAAAAAAAAGTCCATT+TGG - chr1_4:68462847-68462866 Msa0180500:three_prime_UTR 15.0%
!! AATTAAATTAATGTACCAAA+TGG + chr1_4:68462865-68462884 None:intergenic 15.0%
!!! TAATTTAATTTCCAATTATG+AGG - chr1_4:68462875-68462894 Msa0180500:three_prime_UTR 15.0%
!! CATTAGTGATAAAAAAAATT+AGG + chr1_4:68464088-68464107 None:intergenic 15.0%
!! ACTACAATTATATAATTGCA+GGG + chr1_4:68462967-68462986 None:intergenic 20.0%
!!! GCTTTAGCTTAATTATAATA+TGG - chr1_4:68463104-68463123 Msa0180500:three_prime_UTR 20.0%
!!! AGTTTGTTGTCATAAATTTA+AGG + chr1_4:68463327-68463346 None:intergenic 20.0%
!! TTATTGAGTTAAAACCTAAA+AGG - chr1_4:68463705-68463724 Msa0180500:intron 20.0%
!! GTATGAAACATTAATTTAGA+TGG - chr1_4:68463762-68463781 Msa0180500:exon 20.0%
!! ACTACAATTATATAATTGCA+GGG + chr1_4:68462967-68462986 None:intergenic 20.0%
!!! GCTTTAGCTTAATTATAATA+TGG - chr1_4:68463104-68463123 Msa0180500:three_prime_UTR 20.0%
!!! AGTTTGTTGTCATAAATTTA+AGG + chr1_4:68463327-68463346 None:intergenic 20.0%
!! TTATTGAGTTAAAACCTAAA+AGG - chr1_4:68463705-68463724 Msa0180500:intron 20.0%
!! GTATGAAACATTAATTTAGA+TGG - chr1_4:68463762-68463781 Msa0180500:exon 20.0%
! GAGAAATTTATAATCTATGG+TGG + chr1_4:68462251-68462270 None:intergenic 25.0%
! GATTAAAACACATTGAGTTT+AGG + chr1_4:68462795-68462814 None:intergenic 25.0%
! TTTATTAATGATACAGCACA+TGG + chr1_4:68462835-68462854 None:intergenic 25.0%
! CACTACAATTATATAATTGC+AGG + chr1_4:68462968-68462987 None:intergenic 25.0%
! CTGCAATTATATAATTGTAG+TGG - chr1_4:68462966-68462985 Msa0180500:three_prime_UTR 25.0%
! TAAGGAAGCTTCATAATATT+TGG + chr1_4:68463309-68463328 None:intergenic 25.0%
!! TATGTCAAAGTTTTCTTCTT+AGG - chr1_4:68463547-68463566 Msa0180500:intron 25.0%
!!! ATTTATTTTACATGATGCAG+AGG + chr1_4:68463607-68463626 None:intergenic 25.0%
! ATTAATGTTTCATACGATGT+TGG + chr1_4:68463757-68463776 None:intergenic 25.0%
! AAAGTTAAAAATGCAGTTCT+AGG + chr1_4:68463921-68463940 None:intergenic 25.0%
! AATATGAGATGAATATGAAG+TGG - chr1_4:68464193-68464212 Msa0180500:intron 25.0%
! GAGAAATTTATAATCTATGG+TGG + chr1_4:68462251-68462270 None:intergenic 25.0%
! GATTAAAACACATTGAGTTT+AGG + chr1_4:68462795-68462814 None:intergenic 25.0%
! TTTATTAATGATACAGCACA+TGG + chr1_4:68462835-68462854 None:intergenic 25.0%
! CACTACAATTATATAATTGC+AGG + chr1_4:68462968-68462987 None:intergenic 25.0%
! CTGCAATTATATAATTGTAG+TGG - chr1_4:68462966-68462985 Msa0180500:three_prime_UTR 25.0%
! TAAGGAAGCTTCATAATATT+TGG + chr1_4:68463309-68463328 None:intergenic 25.0%
!! TATGTCAAAGTTTTCTTCTT+AGG - chr1_4:68463547-68463566 Msa0180500:intron 25.0%
!!! ATTTATTTTACATGATGCAG+AGG + chr1_4:68463607-68463626 None:intergenic 25.0%
! ATTAATGTTTCATACGATGT+TGG + chr1_4:68463757-68463776 None:intergenic 25.0%
! AAAGTTAAAAATGCAGTTCT+AGG + chr1_4:68463921-68463940 None:intergenic 25.0%
! AATATGAGATGAATATGAAG+TGG - chr1_4:68464193-68464212 Msa0180500:intron 25.0%
ACCATTCATAAAGCAAACAA+GGG + chr1_4:68462374-68462393 None:intergenic 30.0%
AACCATTCATAAAGCAAACA+AGG + chr1_4:68462375-68462394 None:intergenic 30.0%
! GTTTGCTTTATGAATGGTTT+TGG - chr1_4:68462376-68462395 Msa0180500:intron 30.0%
TGACGTAACATTAATCTACT+TGG - chr1_4:68463205-68463224 Msa0180500:intron 30.0%
TAGAAGTTGTTAGGATTTCA+AGG - chr1_4:68463379-68463398 Msa0180500:three_prime_UTR 30.0%
AGAAGTTGTTAGGATTTCAA+GGG - chr1_4:68463380-68463399 Msa0180500:three_prime_UTR 30.0%
! CAAAGTTTTCTTCTTAGGTA+TGG - chr1_4:68463552-68463571 Msa0180500:intron 30.0%
TTTATAACCTGTACCTAGTT+AGG - chr1_4:68463626-68463645 Msa0180500:intron 30.0%
AGTTAAGAAAAGTCAAGTCA+AGG + chr1_4:68463671-68463690 None:intergenic 30.0%
!!! CTTCGTTTTTTTCTCATCTA+GGG + chr1_4:68463809-68463828 None:intergenic 30.0%
!!! ACTTCGTTTTTTTCTCATCT+AGG + chr1_4:68463810-68463829 None:intergenic 30.0%
CTACAATTAACTACACATCT+TGG - chr1_4:68463979-68463998 Msa0180500:intron 30.0%
ATGTCATTCTTATTGTCATC+GGG + chr1_4:68464014-68464033 None:intergenic 30.0%
CATGTCATTCTTATTGTCAT+CGG + chr1_4:68464015-68464034 None:intergenic 30.0%
TGAATATGAAGTGGAAACAA+TGG - chr1_4:68464202-68464221 Msa0180500:intron 30.0%
ACCATTCATAAAGCAAACAA+GGG + chr1_4:68462374-68462393 None:intergenic 30.0%
AACCATTCATAAAGCAAACA+AGG + chr1_4:68462375-68462394 None:intergenic 30.0%
! GTTTGCTTTATGAATGGTTT+TGG - chr1_4:68462376-68462395 Msa0180500:intron 30.0%
TGACGTAACATTAATCTACT+TGG - chr1_4:68463205-68463224 Msa0180500:intron 30.0%
TAGAAGTTGTTAGGATTTCA+AGG - chr1_4:68463379-68463398 Msa0180500:three_prime_UTR 30.0%
AGAAGTTGTTAGGATTTCAA+GGG - chr1_4:68463380-68463399 Msa0180500:three_prime_UTR 30.0%
! CAAAGTTTTCTTCTTAGGTA+TGG - chr1_4:68463552-68463571 Msa0180500:intron 30.0%
TTTATAACCTGTACCTAGTT+AGG - chr1_4:68463626-68463645 Msa0180500:intron 30.0%
AGTTAAGAAAAGTCAAGTCA+AGG + chr1_4:68463671-68463690 None:intergenic 30.0%
!!! CTTCGTTTTTTTCTCATCTA+GGG + chr1_4:68463809-68463828 None:intergenic 30.0%
!!! ACTTCGTTTTTTTCTCATCT+AGG + chr1_4:68463810-68463829 None:intergenic 30.0%
CTACAATTAACTACACATCT+TGG - chr1_4:68463979-68463998 Msa0180500:intron 30.0%
ATGTCATTCTTATTGTCATC+GGG + chr1_4:68464014-68464033 None:intergenic 30.0%
CATGTCATTCTTATTGTCAT+CGG + chr1_4:68464015-68464034 None:intergenic 30.0%
TGAATATGAAGTGGAAACAA+TGG - chr1_4:68464202-68464221 Msa0180500:intron 30.0%
! ACCCTTGTTTGCTTTATGAA+TGG - chr1_4:68462370-68462389 Msa0180500:intron 35.0%
! TAGCCTCTGTTAACTGTTTT+GGG - chr1_4:68462413-68462432 Msa0180500:three_prime_UTR 35.0%
!!! TGTCAATTGGGAGTTTTTTC+TGG - chr1_4:68462464-68462483 Msa0180500:three_prime_UTR 35.0%
AAAAGACAGCACAAAAACGT+AGG + chr1_4:68462644-68462663 None:intergenic 35.0%
! CGTTTTTGTGCTGTCTTTTT+CGG - chr1_4:68462645-68462664 Msa0180500:three_prime_UTR 35.0%
GATTCAAATAGCTAGGGAAT+TGG - chr1_4:68462699-68462718 Msa0180500:three_prime_UTR 35.0%
! AAAGAGAATAAGAGTGCACT+GGG + chr1_4:68462754-68462773 None:intergenic 35.0%
! GTGTTTATCATTTTGCTGAC+AGG - chr1_4:68462988-68463007 Msa0180500:three_prime_UTR 35.0%
!! ATGGAAATTCCACTTTTCGT+TGG - chr1_4:68463014-68463033 Msa0180500:three_prime_UTR 35.0%
!! CTACTTGGCTTCTTACTTTT+AGG - chr1_4:68463220-68463239 Msa0180500:intron 35.0%
CTACAACTGCTCAGATAATA+TGG - chr1_4:68463351-68463370 Msa0180500:intron 35.0%
!! ATGGAGTTCTAGAAGTTGTT+AGG - chr1_4:68463370-68463389 Msa0180500:intron 35.0%
CAACTTGGTACATTTCAGAA+GGG + chr1_4:68463492-68463511 None:intergenic 35.0%
ACAAAACTGTATCTTTGAGC+AGG - chr1_4:68463517-68463536 Msa0180500:intron 35.0%
CAAAACTGTATCTTTGAGCA+GGG - chr1_4:68463518-68463537 Msa0180500:intron 35.0%
AAACCTAAAAGGAATCGAGA+TGG - chr1_4:68463716-68463735 Msa0180500:intron 35.0%
ATGTTTCATACGATGTTGGA+AGG + chr1_4:68463753-68463772 None:intergenic 35.0%
TTTGACTCCATTCTCACATT+TGG - chr1_4:68463938-68463957 Msa0180500:intron 35.0%
CTTCAAACCAAATGTGAGAA+TGG + chr1_4:68463948-68463967 None:intergenic 35.0%
!! CATTCTCACATTTGGTTTGA+AGG - chr1_4:68463946-68463965 Msa0180500:intron 35.0%
CGATGACAATAAGAATGACA+TGG - chr1_4:68464013-68464032 Msa0180500:intron 35.0%
CAATAAGAATGACATGGTTC+TGG - chr1_4:68464019-68464038 Msa0180500:intron 35.0%
TCTCTTGTAGTCTCATTCAT+AGG + chr1_4:68464165-68464184 None:intergenic 35.0%
GACATTTGACGCAAGTAAAA+CGG - chr1_4:68464245-68464264 Msa0180500:intron 35.0%
! AACTCGAGAATCTAGTTTAG+CGG + chr1_4:68464286-68464305 None:intergenic 35.0%
! ACCCTTGTTTGCTTTATGAA+TGG - chr1_4:68462370-68462389 Msa0180500:intron 35.0%
! TAGCCTCTGTTAACTGTTTT+GGG - chr1_4:68462413-68462432 Msa0180500:three_prime_UTR 35.0%
!!! TGTCAATTGGGAGTTTTTTC+TGG - chr1_4:68462464-68462483 Msa0180500:three_prime_UTR 35.0%
AAAAGACAGCACAAAAACGT+AGG + chr1_4:68462644-68462663 None:intergenic 35.0%
! CGTTTTTGTGCTGTCTTTTT+CGG - chr1_4:68462645-68462664 Msa0180500:three_prime_UTR 35.0%
GATTCAAATAGCTAGGGAAT+TGG - chr1_4:68462699-68462718 Msa0180500:three_prime_UTR 35.0%
! AAAGAGAATAAGAGTGCACT+GGG + chr1_4:68462754-68462773 None:intergenic 35.0%
! GTGTTTATCATTTTGCTGAC+AGG - chr1_4:68462988-68463007 Msa0180500:three_prime_UTR 35.0%
!! ATGGAAATTCCACTTTTCGT+TGG - chr1_4:68463014-68463033 Msa0180500:three_prime_UTR 35.0%
!! CTACTTGGCTTCTTACTTTT+AGG - chr1_4:68463220-68463239 Msa0180500:intron 35.0%
CTACAACTGCTCAGATAATA+TGG - chr1_4:68463351-68463370 Msa0180500:intron 35.0%
!! ATGGAGTTCTAGAAGTTGTT+AGG - chr1_4:68463370-68463389 Msa0180500:intron 35.0%
CAACTTGGTACATTTCAGAA+GGG + chr1_4:68463492-68463511 None:intergenic 35.0%
ACAAAACTGTATCTTTGAGC+AGG - chr1_4:68463517-68463536 Msa0180500:intron 35.0%
CAAAACTGTATCTTTGAGCA+GGG - chr1_4:68463518-68463537 Msa0180500:intron 35.0%
AAACCTAAAAGGAATCGAGA+TGG - chr1_4:68463716-68463735 Msa0180500:intron 35.0%
ATGTTTCATACGATGTTGGA+AGG + chr1_4:68463753-68463772 None:intergenic 35.0%
TTTGACTCCATTCTCACATT+TGG - chr1_4:68463938-68463957 Msa0180500:intron 35.0%
CTTCAAACCAAATGTGAGAA+TGG + chr1_4:68463948-68463967 None:intergenic 35.0%
!! CATTCTCACATTTGGTTTGA+AGG - chr1_4:68463946-68463965 Msa0180500:intron 35.0%
CGATGACAATAAGAATGACA+TGG - chr1_4:68464013-68464032 Msa0180500:intron 35.0%
CAATAAGAATGACATGGTTC+TGG - chr1_4:68464019-68464038 Msa0180500:intron 35.0%
TCTCTTGTAGTCTCATTCAT+AGG + chr1_4:68464165-68464184 None:intergenic 35.0%
GACATTTGACGCAAGTAAAA+CGG - chr1_4:68464245-68464264 Msa0180500:intron 35.0%
! AACTCGAGAATCTAGTTTAG+CGG + chr1_4:68464286-68464305 None:intergenic 35.0%
! TGAATCTAGAACAGAGCTGT+CGG - chr1_4:68462174-68462193 Msa0180500:three_prime_UTR 40.0%
TAACAGAGGCTACATTCTCT+AGG + chr1_4:68462405-68462424 None:intergenic 40.0%
! GTAGCCTCTGTTAACTGTTT+TGG - chr1_4:68462412-68462431 Msa0180500:three_prime_UTR 40.0%
AAGCCCAAAACAGTTAACAG+AGG + chr1_4:68462419-68462438 None:intergenic 40.0%
AGAAAACCACGCCAGATAAA+CGG + chr1_4:68462442-68462461 None:intergenic 40.0%
! GTGGTTTTCTGCTGTCAATT+GGG - chr1_4:68462452-68462471 Msa0180500:three_prime_UTR 40.0%
!!! CAATTGGGAGTTTTTTCTGG+TGG - chr1_4:68462467-68462486 Msa0180500:three_prime_UTR 40.0%
!!! TTTCGGTGTTTTGCTGTTCT+AGG - chr1_4:68462662-68462681 Msa0180500:three_prime_UTR 40.0%
AGGGTTGGATTCAAATAGCT+AGG - chr1_4:68462692-68462711 Msa0180500:three_prime_UTR 40.0%
GGGTTGGATTCAAATAGCTA+GGG - chr1_4:68462693-68462712 Msa0180500:three_prime_UTR 40.0%
AGCTAGGGAATTGGTAGATT+AGG - chr1_4:68462708-68462727 Msa0180500:three_prime_UTR 40.0%
! CAAAGAGAATAAGAGTGCAC+TGG + chr1_4:68462755-68462774 None:intergenic 40.0%
AGAAAAGGCAGGTTTGAATC+TGG - chr1_4:68462911-68462930 Msa0180500:three_prime_UTR 40.0%
TATAGTGCACCAACGAAAAG+TGG + chr1_4:68463026-68463045 None:intergenic 40.0%
GTTGTTAGGATTTCAAGGGA+TGG - chr1_4:68463384-68463403 Msa0180500:three_prime_UTR 40.0%
CCAACTTGGTACATTTCAGA+AGG + chr1_4:68463493-68463512 None:intergenic 40.0%
!! CCTTCTGAAATGTACCAAGT+TGG - chr1_4:68463490-68463509 Msa0180500:intron 40.0%
!! ACAGTTTTGTGTAGCCAACT+TGG + chr1_4:68463507-68463526 None:intergenic 40.0%
!!! GTTTTTTTCTCATCTAGGGC+TGG + chr1_4:68463805-68463824 None:intergenic 40.0%
!! TGACATGGTTCTGGAAATAG+AGG - chr1_4:68464028-68464047 Msa0180500:intron 40.0%
CTTGTAGTCTCATTCATAGG+AGG + chr1_4:68464162-68464181 None:intergenic 40.0%
! TGAATCTAGAACAGAGCTGT+CGG - chr1_4:68462174-68462193 Msa0180500:three_prime_UTR 40.0%
TAACAGAGGCTACATTCTCT+AGG + chr1_4:68462405-68462424 None:intergenic 40.0%
! GTAGCCTCTGTTAACTGTTT+TGG - chr1_4:68462412-68462431 Msa0180500:three_prime_UTR 40.0%
AAGCCCAAAACAGTTAACAG+AGG + chr1_4:68462419-68462438 None:intergenic 40.0%
AGAAAACCACGCCAGATAAA+CGG + chr1_4:68462442-68462461 None:intergenic 40.0%
! GTGGTTTTCTGCTGTCAATT+GGG - chr1_4:68462452-68462471 Msa0180500:three_prime_UTR 40.0%
!!! CAATTGGGAGTTTTTTCTGG+TGG - chr1_4:68462467-68462486 Msa0180500:three_prime_UTR 40.0%
!!! TTTCGGTGTTTTGCTGTTCT+AGG - chr1_4:68462662-68462681 Msa0180500:three_prime_UTR 40.0%
AGGGTTGGATTCAAATAGCT+AGG - chr1_4:68462692-68462711 Msa0180500:three_prime_UTR 40.0%
GGGTTGGATTCAAATAGCTA+GGG - chr1_4:68462693-68462712 Msa0180500:three_prime_UTR 40.0%
AGCTAGGGAATTGGTAGATT+AGG - chr1_4:68462708-68462727 Msa0180500:three_prime_UTR 40.0%
! CAAAGAGAATAAGAGTGCAC+TGG + chr1_4:68462755-68462774 None:intergenic 40.0%
AGAAAAGGCAGGTTTGAATC+TGG - chr1_4:68462911-68462930 Msa0180500:three_prime_UTR 40.0%
TATAGTGCACCAACGAAAAG+TGG + chr1_4:68463026-68463045 None:intergenic 40.0%
GTTGTTAGGATTTCAAGGGA+TGG - chr1_4:68463384-68463403 Msa0180500:three_prime_UTR 40.0%
CCAACTTGGTACATTTCAGA+AGG + chr1_4:68463493-68463512 None:intergenic 40.0%
!! CCTTCTGAAATGTACCAAGT+TGG - chr1_4:68463490-68463509 Msa0180500:intron 40.0%
!! ACAGTTTTGTGTAGCCAACT+TGG + chr1_4:68463507-68463526 None:intergenic 40.0%
!!! GTTTTTTTCTCATCTAGGGC+TGG + chr1_4:68463805-68463824 None:intergenic 40.0%
!! TGACATGGTTCTGGAAATAG+AGG - chr1_4:68464028-68464047 Msa0180500:intron 40.0%
CTTGTAGTCTCATTCATAGG+AGG + chr1_4:68464162-68464181 None:intergenic 40.0%
!! GTTTTGGGCTTCCGTTTATC+TGG - chr1_4:68462428-68462447 Msa0180500:three_prime_UTR 45.0%
! CGTGGTTTTCTGCTGTCAAT+TGG - chr1_4:68462451-68462470 Msa0180500:three_prime_UTR 45.0%
!!! GTGCAGGTTTTTGGTGGTTT+CGG - chr1_4:68462495-68462514 Msa0180500:three_prime_UTR 45.0%
TCTCTTGGAAGTTCAGTTGC+TGG - chr1_4:68462531-68462550 Msa0180500:three_prime_UTR 45.0%
!!! GGAAGTTCAGTTGCTGGTTT+TGG - chr1_4:68462537-68462556 Msa0180500:three_prime_UTR 45.0%
!!! GGTGTTTTGCTGTTCTAGGA+GGG - chr1_4:68462666-68462685 Msa0180500:three_prime_UTR 45.0%
!! TTGCTGTTCTAGGAGGGAAA+AGG - chr1_4:68462672-68462691 Msa0180500:three_prime_UTR 45.0%
!! TGCTGTTCTAGGAGGGAAAA+GGG - chr1_4:68462673-68462692 Msa0180500:three_prime_UTR 45.0%
CACTCTCGCTACCTCATAAT+TGG + chr1_4:68462889-68462908 None:intergenic 45.0%
! TCATTTTGCTGACAGGAGCA+TGG - chr1_4:68462995-68463014 Msa0180500:three_prime_UTR 45.0%
GCACTATACTCACAGAAGAG+AGG - chr1_4:68463038-68463057 Msa0180500:three_prime_UTR 45.0%
! TACTCACAGAAGAGAGGTGT+TGG - chr1_4:68463044-68463063 Msa0180500:three_prime_UTR 45.0%
!! GAGGTGTTGGAACAAAGTTC+TGG - chr1_4:68463057-68463076 Msa0180500:three_prime_UTR 45.0%
GCTATGCAGCGAATAAAGTG+AGG + chr1_4:68463287-68463306 None:intergenic 45.0%
CAGTCTCAGAAAGCAGAATC+TGG + chr1_4:68463415-68463434 None:intergenic 45.0%
!! TTCTGAGACTGATGCATGTC+AGG - chr1_4:68463424-68463443 Msa0180500:three_prime_UTR 45.0%
ACTTTGCGAAACAGCGATGA+AGG + chr1_4:68463462-68463481 None:intergenic 45.0%
TCTACTGCCTAACTAGGTAC+AGG + chr1_4:68463636-68463655 None:intergenic 45.0%
TGTGTCTCTACTGCCTAACT+AGG + chr1_4:68463642-68463661 None:intergenic 45.0%
! GAGCCATCTCGATTCCTTTT+AGG + chr1_4:68463722-68463741 None:intergenic 45.0%
!! GTTTTGGGCTTCCGTTTATC+TGG - chr1_4:68462428-68462447 Msa0180500:three_prime_UTR 45.0%
! CGTGGTTTTCTGCTGTCAAT+TGG - chr1_4:68462451-68462470 Msa0180500:three_prime_UTR 45.0%
!!! GTGCAGGTTTTTGGTGGTTT+CGG - chr1_4:68462495-68462514 Msa0180500:three_prime_UTR 45.0%
TCTCTTGGAAGTTCAGTTGC+TGG - chr1_4:68462531-68462550 Msa0180500:three_prime_UTR 45.0%
!!! GGAAGTTCAGTTGCTGGTTT+TGG - chr1_4:68462537-68462556 Msa0180500:three_prime_UTR 45.0%
!!! GGTGTTTTGCTGTTCTAGGA+GGG - chr1_4:68462666-68462685 Msa0180500:three_prime_UTR 45.0%
!! TTGCTGTTCTAGGAGGGAAA+AGG - chr1_4:68462672-68462691 Msa0180500:three_prime_UTR 45.0%
!! TGCTGTTCTAGGAGGGAAAA+GGG - chr1_4:68462673-68462692 Msa0180500:three_prime_UTR 45.0%
CACTCTCGCTACCTCATAAT+TGG + chr1_4:68462889-68462908 None:intergenic 45.0%
! TCATTTTGCTGACAGGAGCA+TGG - chr1_4:68462995-68463014 Msa0180500:three_prime_UTR 45.0%
GCACTATACTCACAGAAGAG+AGG - chr1_4:68463038-68463057 Msa0180500:three_prime_UTR 45.0%
! TACTCACAGAAGAGAGGTGT+TGG - chr1_4:68463044-68463063 Msa0180500:three_prime_UTR 45.0%
!! GAGGTGTTGGAACAAAGTTC+TGG - chr1_4:68463057-68463076 Msa0180500:three_prime_UTR 45.0%
GCTATGCAGCGAATAAAGTG+AGG + chr1_4:68463287-68463306 None:intergenic 45.0%
CAGTCTCAGAAAGCAGAATC+TGG + chr1_4:68463415-68463434 None:intergenic 45.0%
!! TTCTGAGACTGATGCATGTC+AGG - chr1_4:68463424-68463443 Msa0180500:three_prime_UTR 45.0%
ACTTTGCGAAACAGCGATGA+AGG + chr1_4:68463462-68463481 None:intergenic 45.0%
TCTACTGCCTAACTAGGTAC+AGG + chr1_4:68463636-68463655 None:intergenic 45.0%
TGTGTCTCTACTGCCTAACT+AGG + chr1_4:68463642-68463661 None:intergenic 45.0%
! GAGCCATCTCGATTCCTTTT+AGG + chr1_4:68463722-68463741 None:intergenic 45.0%
!!! TTATATATATTTTATATCAT+TGG - chr1_4:68462297-68462316 Msa0180500:intron 5.0%
!!! TTATATATATTTTATATCAT+TGG - chr1_4:68462297-68462316 Msa0180500:intron 5.0%
CTAAACCCTGCTACAGAACG+CGG + chr1_4:68462330-68462349 None:intergenic 50.0%
! TGTTTTCTGCTGCTGTCAGC+TGG - chr1_4:68462604-68462623 Msa0180500:three_prime_UTR 50.0%
! GTTTTCTGCTGCTGTCAGCT+GGG - chr1_4:68462605-68462624 Msa0180500:three_prime_UTR 50.0%
!!! CGGTGTTTTGCTGTTCTAGG+AGG - chr1_4:68462665-68462684 Msa0180500:three_prime_UTR 50.0%
!! GTTCTAGGAGGGAAAAGGGT+TGG - chr1_4:68462677-68462696 Msa0180500:three_prime_UTR 50.0%
GGTAGCGAGAGTGAGAGAAA+AGG - chr1_4:68462896-68462915 Msa0180500:three_prime_UTR 50.0%
!! ACAGCGATGAAGGTGCTTGA+TGG + chr1_4:68463452-68463471 None:intergenic 50.0%
ACTGTATCTTTGAGCAGGGC+AGG - chr1_4:68463522-68463541 Msa0180500:intron 50.0%
CTAAACCCTGCTACAGAACG+CGG + chr1_4:68462330-68462349 None:intergenic 50.0%
! TGTTTTCTGCTGCTGTCAGC+TGG - chr1_4:68462604-68462623 Msa0180500:three_prime_UTR 50.0%
! GTTTTCTGCTGCTGTCAGCT+GGG - chr1_4:68462605-68462624 Msa0180500:three_prime_UTR 50.0%
!!! CGGTGTTTTGCTGTTCTAGG+AGG - chr1_4:68462665-68462684 Msa0180500:three_prime_UTR 50.0%
!! GTTCTAGGAGGGAAAAGGGT+TGG - chr1_4:68462677-68462696 Msa0180500:three_prime_UTR 50.0%
GGTAGCGAGAGTGAGAGAAA+AGG - chr1_4:68462896-68462915 Msa0180500:three_prime_UTR 50.0%
!! ACAGCGATGAAGGTGCTTGA+TGG + chr1_4:68463452-68463471 None:intergenic 50.0%
ACTGTATCTTTGAGCAGGGC+AGG - chr1_4:68463522-68463541 Msa0180500:intron 50.0%
TGGATTCCGCGTTCTGTAGC+AGG - chr1_4:68462321-68462340 Msa0180500:intron 55.0%
GGATTCCGCGTTCTGTAGCA+GGG - chr1_4:68462322-68462341 Msa0180500:intron 55.0%
!! TTTTCTGGTGGCTGCTGTGC+AGG - chr1_4:68462479-68462498 Msa0180500:three_prime_UTR 55.0%
! GTGGCTGCTGTGCAGGTTTT+TGG - chr1_4:68462486-68462505 Msa0180500:three_prime_UTR 55.0%
!! GCTGCTGTGCAGGTTTTTGG+TGG - chr1_4:68462489-68462508 Msa0180500:three_prime_UTR 55.0%
GGCTGCTGTCATGGTTCTCT+TGG - chr1_4:68462516-68462535 Msa0180500:three_prime_UTR 55.0%
!!! TGCTGGTTTTGGTTGCCGAC+TGG - chr1_4:68462548-68462567 Msa0180500:three_prime_UTR 55.0%
! GTTGCCGACTGGCATCTAGA+GGG - chr1_4:68462559-68462578 Msa0180500:three_prime_UTR 55.0%
GCGAGAGTGAGAGAAAAGGC+AGG - chr1_4:68462900-68462919 Msa0180500:three_prime_UTR 55.0%
TGGATTCCGCGTTCTGTAGC+AGG - chr1_4:68462321-68462340 Msa0180500:intron 55.0%
GGATTCCGCGTTCTGTAGCA+GGG - chr1_4:68462322-68462341 Msa0180500:intron 55.0%
!! TTTTCTGGTGGCTGCTGTGC+AGG - chr1_4:68462479-68462498 Msa0180500:three_prime_UTR 55.0%
! GTGGCTGCTGTGCAGGTTTT+TGG - chr1_4:68462486-68462505 Msa0180500:three_prime_UTR 55.0%
!! GCTGCTGTGCAGGTTTTTGG+TGG - chr1_4:68462489-68462508 Msa0180500:three_prime_UTR 55.0%
GGCTGCTGTCATGGTTCTCT+TGG - chr1_4:68462516-68462535 Msa0180500:three_prime_UTR 55.0%
!!! TGCTGGTTTTGGTTGCCGAC+TGG - chr1_4:68462548-68462567 Msa0180500:three_prime_UTR 55.0%
! GTTGCCGACTGGCATCTAGA+GGG - chr1_4:68462559-68462578 Msa0180500:three_prime_UTR 55.0%
GCGAGAGTGAGAGAAAAGGC+AGG - chr1_4:68462900-68462919 Msa0180500:three_prime_UTR 55.0%
GGGCTTCCGTTTATCTGGCG+TGG - chr1_4:68462433-68462452 Msa0180500:three_prime_UTR 60.0%
GGTGGTTTCGGCTGCTGTCA+TGG - chr1_4:68462507-68462526 Msa0180500:three_prime_UTR 60.0%
! GGTTGCCGACTGGCATCTAG+AGG - chr1_4:68462558-68462577 Msa0180500:three_prime_UTR 60.0%
CCGACCCTCTAGATGCCAGT+CGG + chr1_4:68462566-68462585 None:intergenic 60.0%
CCGACTGGCATCTAGAGGGT+CGG - chr1_4:68462563-68462582 Msa0180500:three_prime_UTR 60.0%
ACTGGCATCTAGAGGGTCGG+CGG - chr1_4:68462566-68462585 Msa0180500:three_prime_UTR 60.0%
GGGCTTCCGTTTATCTGGCG+TGG - chr1_4:68462433-68462452 Msa0180500:three_prime_UTR 60.0%
GGTGGTTTCGGCTGCTGTCA+TGG - chr1_4:68462507-68462526 Msa0180500:three_prime_UTR 60.0%
! GGTTGCCGACTGGCATCTAG+AGG - chr1_4:68462558-68462577 Msa0180500:three_prime_UTR 60.0%
CCGACCCTCTAGATGCCAGT+CGG + chr1_4:68462566-68462585 None:intergenic 60.0%
CCGACTGGCATCTAGAGGGT+CGG - chr1_4:68462563-68462582 Msa0180500:three_prime_UTR 60.0%
ACTGGCATCTAGAGGGTCGG+CGG - chr1_4:68462566-68462585 Msa0180500:three_prime_UTR 60.0%
GGTCGGCGGTTGCAGCTGTT+TGG - chr1_4:68462580-68462599 Msa0180500:three_prime_UTR 65.0%
GGTCGGCGGTTGCAGCTGTT+TGG - chr1_4:68462580-68462599 Msa0180500:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 68462144 68464305 68462144 ID=Msa0180500;Name=Msa0180500
chr1_4 mRNA 68462144 68464305 68462144 ID=Msa0180500-mRNA-1;Parent=Msa0180500;Name=Msa0180500-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.6|0.5|1|0.6|0.33|6|1112|64
chr1_4 exon 68462144 68462308 68462144 ID=Msa0180500-mRNA-1:exon:22597;Parent=Msa0180500-mRNA-1
chr1_4 exon 68462400 68463207 68462400 ID=Msa0180500-mRNA-1:exon:22596;Parent=Msa0180500-mRNA-1
chr1_4 exon 68463371 68463463 68463371 ID=Msa0180500-mRNA-1:exon:22595;Parent=Msa0180500-mRNA-1
chr1_4 exon 68463720 68463948 68463720 ID=Msa0180500-mRNA-1:exon:22594;Parent=Msa0180500-mRNA-1
chr1_4 exon 68464254 68464261 68464254 ID=Msa0180500-mRNA-1:exon:22593;Parent=Msa0180500-mRNA-1
chr1_4 exon 68464302 68464305 68464302 ID=Msa0180500-mRNA-1:exon:22592;Parent=Msa0180500-mRNA-1
chr1_4 CDS 68464302 68464305 68464302 ID=Msa0180500-mRNA-1:cds;Parent=Msa0180500-mRNA-1
chr1_4 CDS 68464254 68464261 68464254 ID=Msa0180500-mRNA-1:cds;Parent=Msa0180500-mRNA-1
chr1_4 CDS 68463766 68463948 68463766 ID=Msa0180500-mRNA-1:cds;Parent=Msa0180500-mRNA-1
chr1_4 three_prime_UTR 68463720 68463765 68463720 ID=Msa0180500-mRNA-1:three_prime_utr;Parent=Msa0180500-mRNA-1
chr1_4 three_prime_UTR 68463371 68463463 68463371 ID=Msa0180500-mRNA-1:three_prime_utr;Parent=Msa0180500-mRNA-1
chr1_4 three_prime_UTR 68462400 68463207 68462400 ID=Msa0180500-mRNA-1:three_prime_utr;Parent=Msa0180500-mRNA-1
chr1_4 three_prime_UTR 68462144 68462308 68462144 ID=Msa0180500-mRNA-1:three_prime_utr;Parent=Msa0180500-mRNA-1
Gene Sequence

>Msa0180500

ATGGAGCTGTCGGTTTTTGGTGGTTTCGGCTGCTGTCATGGTTCTCTTGGAAGTTCAGTTGCTGGTTTTGGTTGCCGACTGGCATCTAGAGGGTCGGCGGTTGCAGCTGTTTGGCTGTTTTCTGCTGCTGTCAGCTGGGTTGCAGCTGCTGTCCTACGTTTTTGTGCTGTCTTTTTCGGTGTTTTGCTGTTCTAG

Protein sequence

>Msa0180500

MELSVFGGFGCCHGSLGSSVAGFGCRLASRGSAVAAVWLFSAAVSWVAAAVLRFCAVFFGVLLF*