AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0729030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0729030 MtrunA17_Chr3g0126151 90.123 81 8 0 116 196 44 124 4.11e-47 154
Msa0729030 MtrunA17_Chr3g0126151 86.486 37 5 0 1 37 1 37 2.97e-13 65.9
Msa0729030 MtrunA17_Chr4g0030191 90.278 72 7 0 125 196 175 246 4.20e-37 137
Msa0729030 MtrunA17_Chr7g0263581 76.389 72 17 0 125 196 183 254 1.33e-30 119
Msa0729030 MtrunA17_Chr2g0325911 69.880 83 23 1 125 207 178 258 2.10e-30 119
Msa0729030 MtrunA17_Chr4g0053181 76.389 72 17 0 125 196 220 291 7.28e-30 118
Msa0729030 MtrunA17_Chr5g0401891 76.389 72 17 0 125 196 196 267 1.21e-29 117
Msa0729030 MtrunA17_Chr7g0269621 61.538 78 28 1 217 294 4 79 2.72e-18 81.6
Msa0729030 MtrunA17_Chr1g0195141 73.214 56 15 0 239 294 24 79 1.48e-17 79.7
Msa0729030 MtrunA17_Chr4g0054351 45.570 79 42 1 119 196 361 439 1.47e-15 77.0
Msa0729030 MtrunA17_Chr7g0216601 44.444 90 49 1 108 196 105 194 1.59e-15 76.3
Msa0729030 MtrunA17_Chr8g0367311 46.835 79 41 1 119 196 33 111 2.83e-15 73.9
Msa0729030 MtrunA17_Chr8g0371621 84.444 45 7 0 212 256 346 390 2.84e-15 75.5
Msa0729030 MtrunA17_Chr6g0452911 43.333 90 50 1 108 196 108 197 3.87e-15 75.1
Msa0729030 MtrunA17_Chr3g0135161 45.570 79 42 1 119 196 358 436 4.55e-15 75.5
Msa0729030 MtrunA17_Chr4g0073521 43.956 91 50 1 107 196 83 173 5.81e-15 74.3
Msa0729030 MtrunA17_Chr8g0343851 46.835 79 41 1 119 196 296 374 6.35e-15 74.7
Msa0729030 MtrunA17_Chr1g0212541 100.000 31 0 0 1 31 1 31 4.78e-14 65.5
Msa0729030 MtrunA17_Chr5g0412151 44.304 79 43 1 119 196 275 353 5.30e-14 72.0
Msa0729030 MtrunA17_Chr4g0072291 43.038 79 44 1 119 196 210 288 8.67e-14 71.2
Msa0729030 MtrunA17_Chr4g0019131 96.774 31 1 0 1 31 1 31 1.39e-13 65.1
Msa0729030 MtrunA17_Chr5g0405691 79.070 43 9 0 212 254 325 367 2.30e-13 70.1
Msa0729030 MtrunA17_Chr1g0152161 41.772 79 45 1 119 196 360 438 2.46e-13 70.1
Msa0729030 MtrunA17_Chr5g0400871 44.304 79 43 1 119 196 300 378 3.97e-13 69.3
Msa0729030 MtrunA17_Chr7g0249621 40.506 79 46 1 119 196 310 388 4.59e-13 69.3
Msa0729030 MtrunA17_Chr7g0238391 83.784 37 6 0 1 37 1 37 4.95e-13 64.3
Msa0729030 MtrunA17_Chr4g0032631 39.241 79 47 1 119 196 214 292 7.93e-13 68.6
Msa0729030 MtrunA17_Chr8g0355191 41.758 91 52 1 107 196 91 181 1.12e-12 67.8
Msa0729030 MtrunA17_Chr2g0328971 40.506 79 46 1 119 196 215 293 2.16e-12 67.4
Msa0729030 MtrunA17_Chr8g0362541 32.990 194 102 8 12 196 21 195 4.93e-12 65.9
Msa0729030 MtrunA17_Chr4g0002011 45.205 73 39 1 125 196 93 165 5.77e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0729030 AT2G28550.5 78.082 73 16 0 125 197 31 103 6.33e-32 120
Msa0729030 AT4G36920.1 79.167 72 15 0 125 196 175 246 4.17e-31 120
Msa0729030 AT4G36920.2 79.167 72 15 0 125 196 175 246 4.17e-31 120
Msa0729030 AT2G28550.2 77.778 72 16 0 125 196 197 268 7.37e-31 117
Msa0729030 AT2G28550.6 77.778 72 16 0 125 196 197 268 7.37e-31 117
Msa0729030 AT2G28550.1 78.082 73 16 0 125 197 197 269 1.61e-30 119
Msa0729030 AT2G28550.4 77.778 72 16 0 125 196 197 268 2.11e-30 117
Msa0729030 AT2G28550.3 77.778 72 16 0 125 196 197 268 6.70e-30 118
Msa0729030 AT5G67180.4 70.833 72 21 0 125 196 140 211 1.62e-27 107
Msa0729030 AT5G67180.3 70.833 72 21 0 125 196 140 211 2.62e-27 107
Msa0729030 AT5G67180.2 70.833 72 21 0 125 196 140 211 3.25e-27 107
Msa0729030 AT5G67180.1 70.833 72 21 0 125 196 140 211 3.55e-27 108
Msa0729030 AT5G60120.6 58.571 70 29 0 125 194 204 273 2.93e-18 85.1
Msa0729030 AT5G60120.1 57.746 71 30 0 125 195 204 274 3.10e-18 85.1
Msa0729030 AT5G60120.2 57.746 71 30 0 125 195 204 274 4.04e-18 84.7
Msa0729030 AT5G60120.4 58.571 70 29 0 125 194 204 273 4.76e-18 84.0
Msa0729030 AT5G60120.3 58.571 70 29 0 125 194 204 273 4.76e-18 84.0
Msa0729030 AT5G60120.5 58.571 70 29 0 125 194 204 273 4.76e-18 84.0
Msa0729030 AT2G39250.1 41.071 112 58 2 108 219 135 238 9.01e-16 76.6
Msa0729030 AT2G39250.2 51.389 72 35 0 108 179 135 206 1.90e-15 74.7
Msa0729030 AT3G16780.1 56.410 78 32 1 217 294 4 79 3.56e-15 73.2
Msa0729030 AT4G02230.1 56.410 78 32 1 217 294 4 79 4.35e-15 73.2
Msa0729030 AT1G51190.1 43.038 79 44 1 119 196 238 316 1.42e-14 74.3
Msa0729030 AT1G02780.1 67.857 56 18 0 239 294 24 79 1.56e-14 71.6
Msa0729030 AT5G57390.2 43.038 79 44 1 119 196 133 211 1.89e-14 73.6
Msa0729030 AT5G57390.1 43.038 79 44 1 119 196 251 329 2.48e-14 73.6
Msa0729030 AT3G54990.2 55.556 63 28 0 125 187 166 228 2.61e-14 71.6
Msa0729030 AT1G72570.1 43.038 79 44 1 119 196 271 349 7.07e-14 72.0
Msa0729030 AT3G54990.1 54.688 64 29 0 125 188 166 229 7.22e-14 71.6
Msa0729030 AT1G79700.1 37.838 111 66 2 125 232 106 216 8.55e-14 70.9
Msa0729030 AT5G10510.6 43.038 79 44 1 119 196 316 394 1.48e-13 71.2
Msa0729030 AT5G10510.4 43.038 79 44 1 119 196 316 394 1.48e-13 71.2
Msa0729030 AT5G10510.2 43.038 79 44 1 119 196 275 353 1.51e-13 71.2
Msa0729030 AT5G10510.3 43.038 79 44 1 119 196 336 414 1.51e-13 71.2
Msa0729030 AT5G10510.7 43.038 79 44 1 119 196 278 356 1.54e-13 71.2
Msa0729030 AT5G10510.5 43.038 79 44 1 119 196 278 356 1.54e-13 71.2
Msa0729030 AT5G17430.2 41.772 79 45 1 119 196 196 274 1.74e-13 70.9
Msa0729030 AT1G79700.4 47.945 73 37 1 125 196 24 96 1.76e-13 68.9
Msa0729030 AT1G79700.3 47.945 73 37 1 125 196 30 102 1.77e-13 68.9
Msa0729030 AT5G10510.1 43.038 79 44 1 119 196 301 379 1.84e-13 70.9
Msa0729030 AT5G17430.1 41.772 79 45 1 119 196 258 336 2.04e-13 70.9
Msa0729030 AT1G79700.2 47.945 73 37 1 125 196 106 178 2.78e-13 69.3
Msa0729030 AT3G20840.1 40.506 79 46 1 119 196 229 307 2.80e-13 70.5
Msa0729030 AT3G54320.3 42.222 90 51 1 108 196 102 191 2.85e-13 70.1
Msa0729030 AT3G54320.1 42.222 90 51 1 108 196 102 191 3.25e-13 70.1
Msa0729030 AT5G65510.3 43.038 79 44 1 119 196 221 299 4.32e-13 68.9
Msa0729030 AT5G65510.4 43.038 79 44 1 119 196 221 299 4.59e-13 69.3
Msa0729030 AT5G65510.2 43.038 79 44 1 119 196 279 357 4.91e-13 69.7
Msa0729030 AT5G65510.1 43.038 79 44 1 119 196 279 357 4.91e-13 69.7
Msa0729030 AT1G16060.3 47.222 72 37 1 126 196 43 114 8.48e-13 67.8
Msa0729030 AT3G54320.4 42.222 90 51 1 108 196 36 125 9.18e-13 68.2
Msa0729030 AT3G54320.5 42.222 90 51 1 108 196 36 125 9.18e-13 68.2
Msa0729030 AT1G16060.1 47.222 72 37 1 126 196 113 184 9.85e-13 68.2
Msa0729030 AT3G51250.2 76.744 43 10 0 212 254 336 378 1.60e-12 67.8
Msa0729030 AT4G37750.1 41.772 79 45 1 119 196 331 409 1.61e-12 68.2
Msa0729030 AT3G51250.1 76.744 43 10 0 212 254 336 378 2.17e-12 67.4
Msa0729030 AT2G17840.2 69.767 43 13 0 212 254 325 367 4.00e-12 66.6
Msa0729030 AT2G17840.1 69.767 43 13 0 212 254 325 367 5.46e-12 66.2
Msa0729030 AT4G35985.3 72.093 43 12 0 212 254 315 357 6.58e-12 65.9
Msa0729030 AT4G35985.1 72.093 43 12 0 212 254 315 357 8.28e-12 65.9

Find 117 sgRNAs with CRISPR-Local

Find 517 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAAGTTGCTCTAAAATTT+TGG 0.145593 5_1:+35471400 None:intergenic
GGCTATTAGGCTTCAATTTC+GGG 0.161283 5_1:-35473812 Msa0729030:CDS
GCACTCCATGCACTTCAAAT+AGG 0.189942 5_1:+35471371 None:intergenic
AAACATCAGGAAGTTGTTTA+AGG 0.196812 5_1:-35471771 Msa0729030:CDS
TTAGTTGTGCTGAGTATTCT+AGG 0.225565 5_1:-35471489 Msa0729030:three_prime_UTR
AACAAGTAATTAGGTTTATT+AGG 0.226734 5_1:-35471339 Msa0729030:three_prime_UTR
CTATTATTATTAGGTTTATT+AGG 0.236076 5_1:-35471299 Msa0729030:three_prime_UTR
TATGTCTTCCACCTATTATT+AGG 0.246163 5_1:-35471274 Msa0729030:three_prime_UTR
GTCTTCCACCTATTATTATT+AGG 0.252645 5_1:-35471308 Msa0729030:three_prime_UTR
ACTGGAGTTGTGAAGGTCTC+TGG 0.256501 5_1:-35472625 Msa0729030:CDS
TAAACAACTTCCTGATGTTT+TGG 0.257525 5_1:+35471774 None:intergenic
TGGCTATTAGGCTTCAATTT+CGG 0.261218 5_1:-35473813 Msa0729030:CDS
ATGCAATGAGGTTGGCTATT+AGG 0.263230 5_1:-35473825 Msa0729030:CDS
TTAGAAAATTTCTTTGGCTT+TGG 0.297124 5_1:+35471010 None:intergenic
AAATTCTACTGTTGGTGAAT+AGG 0.298689 5_1:+35471440 None:intergenic
CTTAGTTGGCTTCCTGATAA+TGG 0.300810 5_1:+35471742 None:intergenic
CTAATAAACCTAATAATAAT+AGG 0.305000 5_1:+35471300 None:intergenic
CGAATTTGTGCTTGCATCAT+TGG 0.306603 5_1:-35472539 Msa0729030:CDS
CACTCCATGCACTTCAAATA+GGG 0.312935 5_1:+35471372 None:intergenic
ATGGGTTTAGAAAATTTCTT+TGG 0.315606 5_1:+35471004 None:intergenic
TTTCTTTGGCTTTGGTTTGA+TGG 0.322637 5_1:+35471018 None:intergenic
GCTCGAATGGGTCAATTCTT+TGG 0.326489 5_1:-35473142 Msa0729030:CDS
TTAAGGATGGCTCCATTATC+AGG 0.352370 5_1:-35471754 Msa0729030:CDS
CAAATCTCTGTTAGTTTGTA+AGG 0.359992 5_1:-35471595 Msa0729030:three_prime_UTR
GAATTGAAGGATATAGATTA+TGG 0.360912 5_1:-35471618 Msa0729030:three_prime_UTR
TTCTTTGGCTTTGGTTTGAT+GGG 0.368786 5_1:+35471019 None:intergenic
ATCGAGCTGTGATTAAATTC+AGG 0.369387 5_1:-35473421 Msa0729030:CDS
GAAGACATAAACCTAATAAT+AGG 0.377515 5_1:+35471263 None:intergenic
AAGAGGAAGGGACGTCATTC+TGG 0.380707 5_1:-35471680 Msa0729030:CDS
GACGAAGAATTTATCGAAAG+AGG 0.380753 5_1:-35473260 Msa0729030:CDS
TCGGGAAGTTTATGAGTGTT+GGG 0.384481 5_1:-35473794 Msa0729030:CDS
TCTGAGGCGAGGTATAAATA+TGG 0.385017 5_1:-35478804 Msa0729030:CDS
AAGGGACGTCATTCTGGATA+TGG 0.390520 5_1:-35471674 Msa0729030:CDS
TTCGGGAAGTTTATGAGTGT+TGG 0.401568 5_1:-35473795 Msa0729030:CDS
GAACTCGACGGCGGTGGGAT+TGG 0.407762 5_1:-35478698 Msa0729030:CDS
CGGCGGTGGGATTGGATTGA+AGG 0.418925 5_1:-35478690 Msa0729030:CDS
ATATATCCCCTTGTATCAAA+TGG 0.425462 5_1:-35471222 Msa0729030:three_prime_UTR
TTATGATGATGATCTTAAAC+AGG 0.426832 5_1:-35473363 Msa0729030:intron
CTGGAGTTGTGAAGGTCTCT+GGG 0.429053 5_1:-35472624 Msa0729030:CDS
TCAATTCATTACAACTATCA+AGG 0.436727 5_1:+35471634 None:intergenic
TTTAATCACAGCTCGATCAT+AGG 0.442531 5_1:+35473427 None:intergenic
AAAATGTTCCTCAAGATCAA+TGG 0.447604 5_1:-35473771 Msa0729030:CDS
TCTAAACCGGTCAAATCATC+AGG 0.449308 5_1:-35470953 Msa0729030:three_prime_UTR
TGATAGTTGTAATGAATTGA+AGG 0.454838 5_1:-35471631 Msa0729030:three_prime_UTR
TCTTTGTAGGCCAAAACATC+AGG 0.468870 5_1:-35471784 Msa0729030:intron
GAGAGGGAGTGAATCTTAGT+TGG 0.469063 5_1:+35471728 None:intergenic
CTCCTTCATGCGCCTAGCAC+GGG 0.474189 5_1:+35471706 None:intergenic
TGCCAATGGCGGGTTCTCAC+TGG 0.477394 5_1:-35472643 Msa0729030:CDS
TGGCCGTTGGGAAGCTCGAA+TGG 0.479832 5_1:-35473155 Msa0729030:CDS
CCCATGGTTTGATGATCGGT+TGG 0.483362 5_1:+35471115 None:intergenic
GGCAAAGAACTCGACGGCGG+TGG 0.488834 5_1:-35478704 Msa0729030:CDS
GATATATATACATCAAGAAT+AGG 0.490279 5_1:+35471238 None:intergenic
TATATCCTTACTGAAAGTGT+TGG 0.492687 5_1:+35473745 None:intergenic
TGTCCTTTCCATTTGATACA+AGG 0.494466 5_1:+35471214 None:intergenic
GTGATTAAATTCAGGGGAGT+TGG 0.495775 5_1:-35473413 Msa0729030:CDS
ACTGCACAAATGTGGCCGTT+GGG 0.502208 5_1:-35473167 Msa0729030:CDS
CAGAAAGTGCTGCCAATGGC+GGG 0.507773 5_1:-35472653 Msa0729030:CDS
GTCCTTTCCATTTGATACAA+GGG 0.516924 5_1:+35471215 None:intergenic
ATGCCATAAAATTCTACTGT+TGG 0.517251 5_1:+35471432 None:intergenic
CCATGGTTTGATGATCGGTT+GGG 0.519753 5_1:+35471116 None:intergenic
TCGAGCTGTGATTAAATTCA+GGG 0.520084 5_1:-35473420 Msa0729030:CDS
CACTGCACAAATGTGGCCGT+TGG 0.520758 5_1:-35473168 Msa0729030:CDS
ACTCCTTCATGCGCCTAGCA+CGG 0.520831 5_1:+35471705 None:intergenic
ATCAGGAAGTTGTTTAAGGA+TGG 0.524358 5_1:-35471767 Msa0729030:CDS
TCAACCCTATTTGAAGTGCA+TGG 0.524468 5_1:-35471376 Msa0729030:three_prime_UTR
GCAAAGAACTCGACGGCGGT+GGG 0.531879 5_1:-35478703 Msa0729030:CDS
TTCACTCCCTCTCCCGTGCT+AGG 0.532607 5_1:-35471718 Msa0729030:CDS
CTCCCGTGCTAGGCGCATGA+AGG 0.533050 5_1:-35471708 Msa0729030:CDS
GTTGGAAACCATTGATCTTG+AGG 0.534071 5_1:+35473763 None:intergenic
GATTGACACTTCTTATGTGA+TGG 0.535042 5_1:-35478738 Msa0729030:CDS
TCATGCGCCTAGCACGGGAG+AGG 0.536545 5_1:+35471711 None:intergenic
TCTGAAGGTGAAGGTGGTTG+TGG 0.538155 5_1:-35470908 Msa0729030:three_prime_UTR
ATTGTCATGCTTCCGTCTGA+AGG 0.540606 5_1:-35470923 Msa0729030:three_prime_UTR
TCCTTTCCATTTGATACAAG+GGG 0.540764 5_1:+35471216 None:intergenic
TTTGTGCTTGCATCATTGGA+TGG 0.550004 5_1:-35472535 Msa0729030:CDS
GAAGGTGAAGGTGGTTGTGG+TGG 0.551018 5_1:-35470905 None:intergenic
CATGAAGGAGTACAAGAGGA+AGG 0.551340 5_1:-35471693 Msa0729030:CDS
GGGATTGGATTGAAGGTGAT+CGG 0.553314 5_1:-35478683 Msa0729030:CDS
GGCCGTTGGGAAGCTCGAAT+GGG 0.556502 5_1:-35473154 Msa0729030:CDS
CATGCGCCTAGCACGGGAGA+GGG 0.557277 5_1:+35471712 None:intergenic
ACAGAAAGTGCTGCCAATGG+CGG 0.560136 5_1:-35472654 Msa0729030:intron
TGATCCCATGGTTTGATGAT+CGG 0.566503 5_1:+35471111 None:intergenic
TCAGTGGCAAAATCAAAAGC+AGG 0.567167 5_1:-35472589 Msa0729030:CDS
TCAAGTGGGAGTTCGAAGTA+CGG 0.569076 5_1:-35473199 Msa0729030:CDS
GATGCAAGCACAAATTCGCC+AGG 0.569550 5_1:+35472544 None:intergenic
TCCCCTTGTATCAAATGGAA+AGG 0.572141 5_1:-35471217 Msa0729030:three_prime_UTR
GGTTCTCACTGGAGTTGTGA+AGG 0.573126 5_1:-35472632 Msa0729030:CDS
TGCTGCTCATGCAATGAGGT+TGG 0.575123 5_1:-35473833 Msa0729030:CDS
TATGTGATGGGAAGAGTGAT+CGG 0.577256 5_1:-35478725 Msa0729030:CDS
GTGAAGCCTGATGATTTGAC+CGG 0.580905 5_1:+35470947 None:intergenic
GGCGCATGAAGGAGTACAAG+AGG 0.583689 5_1:-35471697 Msa0729030:CDS
ATTGACACTTCTTATGTGAT+GGG 0.585245 5_1:-35478737 Msa0729030:CDS
GACATAAACCTAATAATAGG+TGG 0.585461 5_1:+35471266 None:intergenic
CTCCAGTGAGAACCCGCCAT+TGG 0.592012 5_1:+35472641 None:intergenic
CCCAACCGATCATCAAACCA+TGG 0.595711 5_1:-35471116 Msa0729030:three_prime_UTR
GACCCATTCGAGCTTCCCAA+CGG 0.607274 5_1:+35473152 None:intergenic
ATAAACCTAATAATAATAGG+TGG 0.611196 5_1:+35471303 None:intergenic
ATATATACATCAAGAATAGG+TGG 0.613926 5_1:+35471241 None:intergenic
AGAAGAGAAACATGATCCCA+TGG 0.620026 5_1:+35471099 None:intergenic
GGAGTAACACTGCACAAATG+TGG 0.629769 5_1:-35473175 Msa0729030:CDS
ATGACAGAAAGTGCTGCCAA+TGG 0.630224 5_1:-35472657 Msa0729030:intron
TAGCAGCTGAATGAATGCAA+TGG 0.632941 5_1:-35478828 None:intergenic
CCAACCGATCATCAAACCAT+GGG 0.642430 5_1:-35471115 Msa0729030:three_prime_UTR
CTTCCGTCTGAAGGTGAAGG+TGG 0.644624 5_1:-35470914 Msa0729030:three_prime_UTR
ATGCTTCCGTCTGAAGGTGA+AGG 0.646034 5_1:-35470917 Msa0729030:three_prime_UTR
TTCAGACGGAAGCATGACAA+TGG 0.647564 5_1:+35470925 None:intergenic
ATGAAGGAGTACAAGAGGAA+GGG 0.649275 5_1:-35471692 Msa0729030:CDS
CAACCACCTTCACCTTCAGA+CGG 0.651234 5_1:+35470911 None:intergenic
GAATGAATGCAATGGATCTG+AGG 0.654402 5_1:-35478820 Msa0729030:CDS
GGTGATCGGAGAAAATGAGA+AGG 0.657737 5_1:-35478669 Msa0729030:intron
CGAGCTGTGATTAAATTCAG+GGG 0.676890 5_1:-35473419 Msa0729030:CDS
AATGCAATGGATCTGAGGCG+AGG 0.697056 5_1:-35478815 Msa0729030:CDS
GTGATCGGCAAAGAACTCGA+CGG 0.705193 5_1:-35478710 Msa0729030:CDS
AGTGGGAGTTCGAAGTACGG+AGG 0.722179 5_1:-35473196 Msa0729030:CDS
ATCGGCAAAGAACTCGACGG+CGG 0.723525 5_1:-35478707 Msa0729030:CDS
AAGATGCTGCTCATGCAATG+AGG 0.725690 5_1:-35473837 Msa0729030:CDS
TCGAAGATGTATGTATGATG+CGG 0.739684 5_1:-35474200 Msa0729030:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTTATTTTTTTTAT+AGG - chr5_1:35471979-35471998 Msa0729030:intron 0.0%
!!! TATTTTTTATTTTTTTTATA+GGG - chr5_1:35471980-35471999 Msa0729030:intron 0.0%
!!! ATTAATTTTTTAAATTTTTT+TGG + chr5_1:35472185-35472204 None:intergenic 0.0%
!!! TTAAAAATTATAAAAAATTT+TGG - chr5_1:35472235-35472254 Msa0729030:intron 0.0%
!!! TATTTTTTATTTTTTTTATA+GGG + chr5_1:35471980-35471999 None:intergenic 0.0%
!!! TTATTTTTTATTTTTTTTAT+AGG + chr5_1:35471979-35471998 None:intergenic 0.0%
!!! TTTATTATTTTTGTCAATTT+TGG - chr5_1:35471653-35471672 Msa0729030:exon 10.0%
!!! TATTTTTAAAATTTTTACAG+GGG + chr5_1:35472073-35472092 None:intergenic 10.0%
!!! TTATTTTGAAAATTAAATTC+CGG + chr5_1:35473030-35473049 None:intergenic 10.0%
!!! TAAAAAAGTTTAGATTTTTT+TGG - chr5_1:35472312-35472331 Msa0729030:intron 10.0%
!!! AAAAAAGTTTAGATTTTTTT+GGG - chr5_1:35472313-35472332 Msa0729030:intron 10.0%
!!! TTTAATTTTCATATTGTAAT+TGG - chr5_1:35472927-35472946 Msa0729030:intron 10.0%
!!! TTAATTTTCATATTGTAATT+GGG - chr5_1:35472928-35472947 Msa0729030:intron 10.0%
!!! TTTTTTTGAAATAAAAAAAC+TGG + chr5_1:35472998-35473017 None:intergenic 10.0%
!! ATGGAAAAAATAAATAAAAA+TGG + chr5_1:35473091-35473110 None:intergenic 10.0%
!! TTGAAAATAATGAAAAAATT+TGG + chr5_1:35473211-35473230 None:intergenic 10.0%
!! ATAAAAATGATAAAAAATCT+GGG + chr5_1:35473281-35473300 None:intergenic 10.0%
!! AATAAAAATGATAAAAAATC+TGG + chr5_1:35473282-35473301 None:intergenic 10.0%
!!! ACGAAATTTTTTTTAAAAAT+TGG + chr5_1:35473312-35473331 None:intergenic 10.0%
!! ATTTAAATTCAATTTAATCT+TGG + chr5_1:35474586-35474605 None:intergenic 10.0%
!! TTAAATTGAATTTAAATAAG+AGG - chr5_1:35474589-35474608 Msa0729030:intron 10.0%
!!! CAATATTTTCAATATATATT+AGG + chr5_1:35475336-35475355 None:intergenic 10.0%
!!! ATATCCATTTTAATTATATT+AGG + chr5_1:35475378-35475397 None:intergenic 10.0%
!! ATATAATTAAAATGGATATA+AGG - chr5_1:35475379-35475398 Msa0729030:intron 10.0%
!!! AATATTTTCAAAATAAAGTT+AGG + chr5_1:35475415-35475434 None:intergenic 10.0%
!!! TTGTGTAATTAATTTTTTTA+TGG - chr5_1:35476245-35476264 Msa0729030:intron 10.0%
!!! ATTTTTTTCAATGTTTTAAA+TGG + chr5_1:35476841-35476860 None:intergenic 10.0%
!!! CTTTTTTTATTTTTAAACTA+AGG + chr5_1:35478584-35478603 None:intergenic 10.0%
!! AGCTAAATTTCATATAAAAA+AGG + chr5_1:35471477-35471496 None:intergenic 15.0%
!!! ATTTTTAAAATTTTTACAGG+GGG + chr5_1:35472072-35472091 None:intergenic 15.0%
!! TAGAAGATATTTAAAAATAC+CGG - chr5_1:35472273-35472292 Msa0729030:intron 15.0%
!!! AATTTTTGTTAGGATATTTT+AGG + chr5_1:35472553-35472572 None:intergenic 15.0%
!! TAGAAGATATTTAAAAATAC+TGG + chr5_1:35472273-35472292 None:intergenic 15.0%
!!! GAAAGTGTTTTTTTTTTTTT+GGG + chr5_1:35473666-35473685 None:intergenic 15.0%
!!! ATTATAGTTTGTTTATTGTT+TGG - chr5_1:35474132-35474151 Msa0729030:intron 15.0%
!!! TACTTTTTGTATCTATTTTA+AGG - chr5_1:35474413-35474432 Msa0729030:intron 15.0%
!! TTAATCAAAAACAAAAGAAA+AGG + chr5_1:35474533-35474552 None:intergenic 15.0%
!!! GTTTTATTTTTCAAAATTAG+TGG - chr5_1:35474715-35474734 Msa0729030:intron 15.0%
!!! TTTTTATGAACAAAACATAT+AGG - chr5_1:35475227-35475246 Msa0729030:intron 15.0%
!!! ATTTTAATTATATTAGGTAG+TGG + chr5_1:35475372-35475391 None:intergenic 15.0%
!! ACTACCTAATATAATTAAAA+TGG - chr5_1:35475371-35475390 Msa0729030:intron 15.0%
!! ACTTCAGTTAAATTAAAAAT+AGG + chr5_1:35476624-35476643 None:intergenic 15.0%
!! CTTTGTTCAATTTATTTAAA+TGG - chr5_1:35477908-35477927 Msa0729030:intron 15.0%
!! TTCAATTTATTTAAATGGTT+TGG - chr5_1:35477913-35477932 Msa0729030:intron 15.0%
!! CTAATAAACCTAATAATAAT+AGG + chr5_1:35478429-35478448 None:intergenic 15.0%
!! CTATTATTATTAGGTTTATT+AGG - chr5_1:35478427-35478446 Msa0729030:intron 15.0%
!!! GTTTCTTTGTTTTTAATAGA+TGG - chr5_1:35471134-35471153 Msa0729030:three_prime_UTR 20.0%
!!! ATGATTAGTGAATTTTTGTT+AGG + chr5_1:35472563-35472582 None:intergenic 20.0%
!!! TTCATATTCTTTTTGTAATC+TGG + chr5_1:35472622-35472641 None:intergenic 20.0%
!! AACATTTGTCAAAAACAATT+AGG - chr5_1:35472647-35472666 Msa0729030:CDS 20.0%
!! TAAAAACGAAAACAAAAATC+TGG + chr5_1:35473177-35473196 None:intergenic 20.0%
!!! GGAAAGTGTTTTTTTTTTTT+TGG + chr5_1:35473667-35473686 None:intergenic 20.0%
!!! GATTTGTAAAGATGTTTTAA+TGG - chr5_1:35474084-35474103 Msa0729030:intron 20.0%
!! AGAAGGAAAAAAAAAACAAT+CGG + chr5_1:35474215-35474234 None:intergenic 20.0%
!!! GCATTTTGTTTGATATTTTA+GGG - chr5_1:35474435-35474454 Msa0729030:intron 20.0%
!!! ATTTTAATGCTTTTGTATGT+TGG + chr5_1:35475259-35475278 None:intergenic 20.0%
!!! AACATACAAAAGCATTAAAA+TGG - chr5_1:35475258-35475277 Msa0729030:intron 20.0%
!!! GAAACTTATTTTGAAAATGA+TGG - chr5_1:35475294-35475313 Msa0729030:intron 20.0%
!! TAATTAAAATGGATATAAGG+TGG - chr5_1:35475382-35475401 Msa0729030:intron 20.0%
!! CAAGATCAGAAATATATATT+AGG + chr5_1:35475487-35475506 None:intergenic 20.0%
!! ATATGATGACTATGAATATA+TGG - chr5_1:35475721-35475740 Msa0729030:intron 20.0%
!! TTCTAGTAATGTTACAATTT+CGG - chr5_1:35475816-35475835 Msa0729030:intron 20.0%
!!! TAGTGTAACATTTTAAATTG+TGG - chr5_1:35476743-35476762 Msa0729030:intron 20.0%
!!! TGTTATGTTTTGTGATTTTT+AGG - chr5_1:35476954-35476973 Msa0729030:intron 20.0%
!!! GTTTTCTATTTCTTAATTTG+CGG + chr5_1:35477323-35477342 None:intergenic 20.0%
!!! CATATTTTTGATAAGATTGA+AGG + chr5_1:35477345-35477364 None:intergenic 20.0%
!!! AAAGAATTTTGTCCTTTAAA+TGG + chr5_1:35477460-35477479 None:intergenic 20.0%
!! AATTCGAATATGAGATATTA+AGG - chr5_1:35477504-35477523 Msa0729030:intron 20.0%
!! ATTCGAATATGAGATATTAA+GGG - chr5_1:35477505-35477524 Msa0729030:intron 20.0%
!!! ATTTCAGTTTTTTATCTTTC+AGG - chr5_1:35477619-35477638 Msa0729030:intron 20.0%
!! ATTGTAGGATAAAGAATAAA+GGG - chr5_1:35477657-35477676 Msa0729030:intron 20.0%
!!! AATTTATTTAAATGGTTTGG+TGG - chr5_1:35477916-35477935 Msa0729030:intron 20.0%
!!! AATAAGTTGCTCTAAAATTT+TGG + chr5_1:35478329-35478348 None:intergenic 20.0%
!! AAGTTCAAAAACAAGTAATT+AGG - chr5_1:35478378-35478397 Msa0729030:intron 20.0%
!! AACAAGTAATTAGGTTTATT+AGG - chr5_1:35478387-35478406 Msa0729030:intron 20.0%
!! ATAAACCTAATAATAATAGG+TGG + chr5_1:35478426-35478445 None:intergenic 20.0%
!! GATATATATACATCAAGAAT+AGG + chr5_1:35478491-35478510 None:intergenic 20.0%
!!! TTTTTAAACTAAGGTTTTGA+AGG + chr5_1:35478575-35478594 None:intergenic 20.0%
!!! CTCTTTAGTTTTAATTTGAT+GGG + chr5_1:35478743-35478762 None:intergenic 20.0%
!!! TCTCTTTAGTTTTAATTTGA+TGG + chr5_1:35478744-35478763 None:intergenic 20.0%
! AAAAGAAACATGCATGAATT+AGG + chr5_1:35471099-35471118 None:intergenic 25.0%
!!! TTTGTTTTTAATAGATGGTG+AGG - chr5_1:35471139-35471158 Msa0729030:three_prime_UTR 25.0%
! CAACAATAACAAAACATATG+AGG + chr5_1:35471176-35471195 None:intergenic 25.0%
!!! GTGTTAGATTGATTTGAATT+TGG - chr5_1:35471239-35471258 Msa0729030:three_prime_UTR 25.0%
! TAATAATCAAAGCAAACCTA+GGG + chr5_1:35471273-35471292 None:intergenic 25.0%
!! TAGGTTTGCTTTGATTATTA+GGG - chr5_1:35471273-35471292 Msa0729030:three_prime_UTR 25.0%
! TGAGTTTATGATTGTAGATT+TGG - chr5_1:35471308-35471327 Msa0729030:three_prime_UTR 25.0%
! TGGATGCTATTAGTAAAATT+TGG + chr5_1:35471541-35471560 None:intergenic 25.0%
!!! AAAATTTTTAGCATCAGACA+TGG + chr5_1:35471606-35471625 None:intergenic 25.0%
! GGGAAAATTGAAAAAAAATG+TGG + chr5_1:35471683-35471702 None:intergenic 25.0%
!! AAGGTGTTATGAGATATTTA+GGG + chr5_1:35471734-35471753 None:intergenic 25.0%
! ACACCTTGTCAAAAAAAAAA+AGG - chr5_1:35471747-35471766 Msa0729030:CDS 25.0%
! CACCTTGTCAAAAAAAAAAA+GGG - chr5_1:35471748-35471767 Msa0729030:CDS 25.0%
!!! AACCCTTTTTTTTTTTGACA+AGG + chr5_1:35471753-35471772 None:intergenic 25.0%
!!! TCGAAAGAATCTTTTTTACA+GGG + chr5_1:35471821-35471840 None:intergenic 25.0%
!!! ATCGAAAGAATCTTTTTTAC+AGG + chr5_1:35471822-35471841 None:intergenic 25.0%
!!! TAGGATTTAATTTTAGCGAA+TGG - chr5_1:35472666-35472685 Msa0729030:intron 25.0%
!!! TCGAAAGAATCTTTTTTTAC+AGG - chr5_1:35473593-35473612 Msa0729030:CDS 25.0%
!!! CGAAAGAATCTTTTTTTACA+GGG - chr5_1:35473594-35473613 Msa0729030:intron 25.0%
!!! GAAAGAATCTTTTTTTACAG+GGG - chr5_1:35473595-35473614 Msa0729030:intron 25.0%
!!! AAAGAATCTTTTTTTACAGG+GGG - chr5_1:35473596-35473615 Msa0729030:intron 25.0%
! GTTTATGAACAACACAAATT+GGG + chr5_1:35473833-35473852 None:intergenic 25.0%
!!! ATTTTGCGATTGATTTTGTT+AGG + chr5_1:35473855-35473874 None:intergenic 25.0%
! TGTTCAATTTATTCTCAAAC+TGG - chr5_1:35474017-35474036 Msa0729030:intron 25.0%
! AACAGATCTATAATTTCAGA+AGG + chr5_1:35474232-35474251 None:intergenic 25.0%
!! GAAAAGTTATGAGCTTTATA+TGG - chr5_1:35474285-35474304 Msa0729030:intron 25.0%
! TTCTCGTTCATTTGATTAAA+AGG - chr5_1:35474342-35474361 Msa0729030:intron 25.0%
! TCTCGTTCATTTGATTAAAA+GGG - chr5_1:35474343-35474362 Msa0729030:intron 25.0%
!!! GGCATTTTGTTTGATATTTT+AGG - chr5_1:35474434-35474453 Msa0729030:intron 25.0%
!!! TTTCAAGTTTATGTCAGTTT+GGG + chr5_1:35474649-35474668 None:intergenic 25.0%
! AATAGAATATTGAATCGATG+TGG - chr5_1:35474880-35474899 Msa0729030:intron 25.0%
! ATAGAATATTGAATCGATGT+GGG - chr5_1:35474881-35474900 Msa0729030:intron 25.0%
! TCTCTCAATTAAAACATACA+GGG - chr5_1:35475187-35475206 Msa0729030:intron 25.0%
! TCAAAATAAAGTTAGGTTAG+TGG + chr5_1:35475408-35475427 None:intergenic 25.0%
! TTAACATTTAGTCCATCAAT+TGG + chr5_1:35475461-35475480 None:intergenic 25.0%
! TCTAGTAATGTTACAATTTC+GGG - chr5_1:35475817-35475836 Msa0729030:intron 25.0%
! TTATAAACCTGTTGTATTGT+TGG - chr5_1:35476107-35476126 Msa0729030:intron 25.0%
! TATAAACCTGTTGTATTGTT+GGG - chr5_1:35476108-35476127 Msa0729030:intron 25.0%
! GAAAATATGTTCAAAGTGTA+AGG + chr5_1:35476218-35476237 None:intergenic 25.0%
!! TTATGATGATGATCTTAAAC+AGG - chr5_1:35476363-35476382 Msa0729030:intron 25.0%
! ATATTGAAACATCATGTATC+TGG - chr5_1:35476714-35476733 Msa0729030:intron 25.0%
!!! TTTTTTGTCGTTAATGTTTG+TGG - chr5_1:35476863-35476882 Msa0729030:intron 25.0%
!! TAAGAGCATATAACTGATAT+TGG - chr5_1:35477003-35477022 Msa0729030:intron 25.0%
!!! TATTTCAATCCTTGTCATTT+TGG - chr5_1:35477229-35477248 Msa0729030:intron 25.0%
!!! ATTTCAATCCTTGTCATTTT+GGG - chr5_1:35477230-35477249 Msa0729030:intron 25.0%
! TGTTAGAAACTTGAAAATCT+AGG - chr5_1:35477283-35477302 Msa0729030:intron 25.0%
! ATATCTCATATTCGAATTTG+TGG + chr5_1:35477502-35477521 None:intergenic 25.0%
! TTCGAATATGAGATATTAAG+GGG - chr5_1:35477506-35477525 Msa0729030:intron 25.0%
!!! GTTTTTTATCTTTCAGGTTT+CGG - chr5_1:35477625-35477644 Msa0729030:intron 25.0%
! CATTGTAGGATAAAGAATAA+AGG - chr5_1:35477656-35477675 Msa0729030:intron 25.0%
! TTGTAGGATAAAGAATAAAG+GGG - chr5_1:35477658-35477677 Msa0729030:intron 25.0%
! GAGGGATATAATTTATAAAC+AGG - chr5_1:35477722-35477741 Msa0729030:intron 25.0%
! AGGAATAATAAACAGTTAGT+CGG - chr5_1:35477742-35477761 Msa0729030:intron 25.0%
! AAAGAAAATGAATAGAAAGG+AGG + chr5_1:35477826-35477845 None:intergenic 25.0%
! AGGAAAGAAAATGAATAGAA+AGG + chr5_1:35477829-35477848 None:intergenic 25.0%
! TCAATTCATTACAACTATCA+AGG + chr5_1:35478095-35478114 None:intergenic 25.0%
! TGATAGTTGTAATGAATTGA+AGG - chr5_1:35478095-35478114 Msa0729030:intron 25.0%
! GAATTGAAGGATATAGATTA+TGG - chr5_1:35478108-35478127 Msa0729030:intron 25.0%
! GAAGACATAAACCTAATAAT+AGG + chr5_1:35478466-35478485 None:intergenic 25.0%
! ATATATACATCAAGAATAGG+TGG + chr5_1:35478488-35478507 None:intergenic 25.0%
!!! GTTTTTTGTCTTTGTTTCAT+GGG + chr5_1:35478654-35478673 None:intergenic 25.0%
!!! TTAGAAACTGTTTTTGTGAT+GGG + chr5_1:35478686-35478705 None:intergenic 25.0%
!!! TTTAGAAACTGTTTTTGTGA+TGG + chr5_1:35478687-35478706 None:intergenic 25.0%
!! TTAGAAAATTTCTTTGGCTT+TGG + chr5_1:35478719-35478738 None:intergenic 25.0%
! ATGGGTTTAGAAAATTTCTT+TGG + chr5_1:35478725-35478744 None:intergenic 25.0%
! GAGAAAAAAAGTTTCTAAAC+CGG - chr5_1:35478760-35478779 Msa0729030:CDS 25.0%
ATTGACACTTCTTATGTGAT+GGG - chr5_1:35470989-35471008 Msa0729030:three_prime_UTR 30.0%
AATAGATGGTGAGGTTTAAA+CGG - chr5_1:35471148-35471167 Msa0729030:three_prime_UTR 30.0%
!!! GAATTTGGTTTTAAAACCCT+AGG - chr5_1:35471254-35471273 Msa0729030:three_prime_UTR 30.0%
CTAATAATCAAAGCAAACCT+AGG + chr5_1:35471274-35471293 None:intergenic 30.0%
! CTAGGTTTGCTTTGATTATT+AGG - chr5_1:35471272-35471291 Msa0729030:three_prime_UTR 30.0%
GACAATATTAGCATCAGAAA+TGG + chr5_1:35471399-35471418 None:intergenic 30.0%
TTCATTTGCATCAGAATTTG+TGG + chr5_1:35471442-35471461 None:intergenic 30.0%
AAATATAGCATCAGACTTTG+TGG + chr5_1:35471561-35471580 None:intergenic 30.0%
GGAAGAGTGAAAAAATTTGT+GGG + chr5_1:35471703-35471722 None:intergenic 30.0%
! CAAGGTGTTATGAGATATTT+AGG + chr5_1:35471735-35471754 None:intergenic 30.0%
!!! AAAGAATCTTTTTTACAGGG+GGG + chr5_1:35471818-35471837 None:intergenic 30.0%
!!! GAAAGAATCTTTTTTACAGG+GGG + chr5_1:35471819-35471838 None:intergenic 30.0%
!!! CGAAAGAATCTTTTTTACAG+GGG + chr5_1:35471820-35471839 None:intergenic 30.0%
GAATCTTTATATTACAGGGT+TGG + chr5_1:35473568-35473587 None:intergenic 30.0%
GACGGAATCTTTATATTACA+GGG + chr5_1:35473564-35473583 None:intergenic 30.0%
!!! TTTTTTTTATAGGGTACACG+TGG - chr5_1:35471989-35472008 Msa0729030:intron 30.0%
!!! TATTTTAGGACTGTTTCGTT+TGG + chr5_1:35472539-35472558 None:intergenic 30.0%
!!! ATTTTTTTTATAGGGACACG+TGG + chr5_1:35473427-35473446 None:intergenic 30.0%
GACGGAATCTTTATATTACA+GGG - chr5_1:35473564-35473583 Msa0729030:intron 30.0%
GAATCTTTATATTACAGGGT+TGG - chr5_1:35473568-35473587 Msa0729030:intron 30.0%
TATCTTTACCCCTGTAATAT+AGG + chr5_1:35473637-35473656 None:intergenic 30.0%
!!! CAAATTGGGAATTTTAGGTT+TGG + chr5_1:35473819-35473838 None:intergenic 30.0%
! CAACACAAATTGGGAATTTT+AGG + chr5_1:35473824-35473843 None:intergenic 30.0%
GGTTTATGAACAACACAAAT+TGG + chr5_1:35473834-35473853 None:intergenic 30.0%
AATCTAAACCATAAGAGAAG+AGG + chr5_1:35474068-35474087 None:intergenic 30.0%
!! ATTTTGTTTGTGAATGGGTT+TGG - chr5_1:35474459-35474478 Msa0729030:intron 30.0%
!!! GGCTTTTTCAACAAAAGAAA+AGG + chr5_1:35474565-35474584 None:intergenic 30.0%
TGATCTCTATGTACTGTTTA+AGG + chr5_1:35474626-35474645 None:intergenic 30.0%
!! GTTTCAAGTTTATGTCAGTT+TGG + chr5_1:35474650-35474669 None:intergenic 30.0%
!! AACTTGAAACAAGAAGTGTT+AGG - chr5_1:35474660-35474679 Msa0729030:intron 30.0%
!! AACAAGAAGTGTTAGGATTT+CGG - chr5_1:35474667-35474686 Msa0729030:intron 30.0%
ATAAAACCAAAAGCCATAAC+AGG + chr5_1:35474775-35474794 None:intergenic 30.0%
!!! TGTTATGGCTTTTGGTTTTA+TGG - chr5_1:35474774-35474793 Msa0729030:intron 30.0%
!!! GTTATGGCTTTTGGTTTTAT+GGG - chr5_1:35474775-35474794 Msa0729030:intron 30.0%
!!! TCTGCCATGTTGATTTTTTT+TGG - chr5_1:35474828-35474847 Msa0729030:intron 30.0%
!!! CTGCCATGTTGATTTTTTTT+GGG - chr5_1:35474829-35474848 Msa0729030:intron 30.0%
!! AGATTTGTTTGACTTGATCA+AGG + chr5_1:35474952-35474971 None:intergenic 30.0%
TGTAAAAGAGGTTTGAAGAT+AGG + chr5_1:35475017-35475036 None:intergenic 30.0%
!! CAACTTTCAAGTTTCAAGAT+AGG + chr5_1:35475044-35475063 None:intergenic 30.0%
CTCTCTCAATTAAAACATAC+AGG - chr5_1:35475186-35475205 Msa0729030:intron 30.0%
ATGATGCGGTAAATATTCAT+AGG - chr5_1:35475540-35475559 Msa0729030:intron 30.0%
CTCATTCAGCTAAAAAACAA+GGG + chr5_1:35475628-35475647 None:intergenic 30.0%
AAAATGTTCCTCAAGATCAA+TGG - chr5_1:35475955-35475974 Msa0729030:intron 30.0%
! TATATCCTTACTGAAAGTGT+TGG + chr5_1:35475984-35476003 None:intergenic 30.0%
GTTTATGTGGTTGAAAATTG+TGG - chr5_1:35476080-35476099 Msa0729030:intron 30.0%
! CAAATAGGAAAAGAGTACAT+GGG + chr5_1:35476169-35476188 None:intergenic 30.0%
! ACAAATAGGAAAAGAGTACA+TGG + chr5_1:35476170-35476189 None:intergenic 30.0%
ATCGCAGATAAGAAACAAAT+AGG + chr5_1:35476184-35476203 None:intergenic 30.0%
! AGGCTCTGATATTCAAAATT+TGG + chr5_1:35476282-35476301 None:intergenic 30.0%
TTGATGAATGTGAAACTAGA+TGG - chr5_1:35476407-35476426 Msa0729030:intron 30.0%
! AAAGCAATGTTTTCTCAAGT+GGG - chr5_1:35476513-35476532 Msa0729030:intron 30.0%
!! TGTTTTAAATGGCAGTGTAA+AGG + chr5_1:35476830-35476849 None:intergenic 30.0%
TATCAGTTATATGCTCTTAC+AGG + chr5_1:35477002-35477021 None:intergenic 30.0%
!! TAACTGATATTGGTTTCCTT+TGG - chr5_1:35477013-35477032 Msa0729030:intron 30.0%
!! AAAATTTTCAAGCTTCTACC+TGG - chr5_1:35477164-35477183 Msa0729030:intron 30.0%
!!! TTTCAATCCTTGTCATTTTG+GGG - chr5_1:35477231-35477250 Msa0729030:intron 30.0%
TTCATAGTATTTAGCTACGT+TGG - chr5_1:35477428-35477447 Msa0729030:intron 30.0%
TCATAGTATTTAGCTACGTT+GGG - chr5_1:35477429-35477448 Msa0729030:intron 30.0%
TACTATATAGAGTAGTTAGC+TGG - chr5_1:35477696-35477715 Msa0729030:intron 30.0%
! CTATTCATTTTCTTTCCTAG+AGG - chr5_1:35477831-35477850 Msa0729030:intron 30.0%
TTGAACAAAGTTATTGTCTC+AGG + chr5_1:35477898-35477917 None:intergenic 30.0%
! TAAACAACTTCCTGATGTTT+TGG + chr5_1:35477955-35477974 None:intergenic 30.0%
AAACATCAGGAAGTTGTTTA+AGG - chr5_1:35477955-35477974 Msa0729030:intron 30.0%
!! CAAATCTCTGTTAGTTTGTA+AGG - chr5_1:35478131-35478150 Msa0729030:intron 30.0%
! AAATTCTACTGTTGGTGAAT+AGG + chr5_1:35478289-35478308 None:intergenic 30.0%
! TCACCAACAGTAGAATTTTA+TGG - chr5_1:35478291-35478310 Msa0729030:intron 30.0%
ATGCCATAAAATTCTACTGT+TGG + chr5_1:35478297-35478316 None:intergenic 30.0%
GTCTTCCACCTATTATTATT+AGG - chr5_1:35478418-35478437 Msa0729030:intron 30.0%
TATGTCTTCCACCTATTATT+AGG - chr5_1:35478415-35478434 Msa0729030:intron 30.0%
GACATAAACCTAATAATAGG+TGG + chr5_1:35478463-35478482 None:intergenic 30.0%
ATATATCCCCTTGTATCAAA+TGG - chr5_1:35478504-35478523 Msa0729030:intron 30.0%
!!! GGTTTTTTGTCTTTGTTTCA+TGG + chr5_1:35478655-35478674 None:intergenic 30.0%
!!! TTTTTGTGATGGGTTTAGAA+GGG + chr5_1:35478676-35478695 None:intergenic 30.0%
GATTGACACTTCTTATGTGA+TGG - chr5_1:35470988-35471007 Msa0729030:three_prime_UTR 35.0%
ATAGATGGTGAGGTTTAAAC+GGG - chr5_1:35471149-35471168 Msa0729030:three_prime_UTR 35.0%
! CTTTGATTATTAGGGAGCAT+TGG - chr5_1:35471281-35471300 Msa0729030:three_prime_UTR 35.0%
!! GTAGATTTGGTGTGAAATTG+AGG - chr5_1:35471321-35471340 Msa0729030:three_prime_UTR 35.0%
!! GAAAGTTGCTATTTAGCTTC+AGG - chr5_1:35471358-35471377 Msa0729030:three_prime_UTR 35.0%
CAGAATTTGTGGATGCTAAA+TGG + chr5_1:35471431-35471450 None:intergenic 35.0%
! GAAATTTAGCTTCAGTCAGA+TGG - chr5_1:35471486-35471505 Msa0729030:three_prime_UTR 35.0%
GGGAAGAGTGAAAAAATTTG+TGG + chr5_1:35471704-35471723 None:intergenic 35.0%
! GAGATATTTAGGGAAAGTGT+GGG + chr5_1:35471724-35471743 None:intergenic 35.0%
TGAGATATTTAGGGAAAGTG+TGG + chr5_1:35471725-35471744 None:intergenic 35.0%
CGACGGAATCTTTATATTAC+AGG + chr5_1:35473563-35473582 None:intergenic 35.0%
! ATTTTTACAGGGGGTAAAAC+TGG + chr5_1:35472063-35472082 None:intergenic 35.0%
TTGGGAAGTTCAAAAGACAT+TGG - chr5_1:35472331-35472350 Msa0729030:intron 35.0%
AAAGAGAGAGATACAAAGAC+TGG - chr5_1:35472453-35472472 Msa0729030:intron 35.0%
AAGAGAGAGATACAAAGACT+GGG - chr5_1:35472454-35472473 Msa0729030:intron 35.0%
! TAATGATGTATGCCCGTTTT+GGG + chr5_1:35472507-35472526 None:intergenic 35.0%
! ATAATGATGTATGCCCGTTT+TGG + chr5_1:35472508-35472527 None:intergenic 35.0%
!! ACTTGGGTTTGTTATTGTGT+TGG + chr5_1:35472700-35472719 None:intergenic 35.0%
CTGAGAAGCTTGAATTACAT+AGG + chr5_1:35472842-35472861 None:intergenic 35.0%
CGACGGAATCTTTATATTAC+AGG - chr5_1:35473563-35473582 Msa0729030:intron 35.0%
! AAATCGCGTTTGTGTGTTTT+GGG + chr5_1:35473688-35473707 None:intergenic 35.0%
GAGAAGTGATTATGAGTGAT+GGG + chr5_1:35473786-35473805 None:intergenic 35.0%
TGAGAAGTGATTATGAGTGA+TGG + chr5_1:35473787-35473806 None:intergenic 35.0%
!! CAACAAAAGCATCGCAAATT+TGG + chr5_1:35473900-35473919 None:intergenic 35.0%
TCAATTGTCCTCTTCTCTTA+TGG - chr5_1:35474057-35474076 Msa0729030:intron 35.0%
!! TAGGGCATTTTGTTTGTGAA+TGG - chr5_1:35474453-35474472 Msa0729030:intron 35.0%
!! AGGGCATTTTGTTTGTGAAT+GGG - chr5_1:35474454-35474473 Msa0729030:intron 35.0%
CGATTCAATATTCTATTCCC+TGG + chr5_1:35474877-35474896 None:intergenic 35.0%
AAGATAGGCTCTTGTAAAAG+AGG + chr5_1:35475029-35475048 None:intergenic 35.0%
AAACTTAAGCTACTGCAAAG+TGG + chr5_1:35475087-35475106 None:intergenic 35.0%
!!! TTAGGTAGTGGACATTTTAG+TGG + chr5_1:35475360-35475379 None:intergenic 35.0%
!!! TCTTGTTTTCCTTGTAGACA+TGG - chr5_1:35475502-35475521 Msa0729030:intron 35.0%
TCGAAGATGTATGTATGATG+CGG - chr5_1:35475526-35475545 Msa0729030:intron 35.0%
CCTCATTCAGCTAAAAAACA+AGG + chr5_1:35475629-35475648 None:intergenic 35.0%
!!! CCTTGTTTTTTAGCTGAATG+AGG - chr5_1:35475626-35475645 Msa0729030:intron 35.0%
!! TTTTAGCTGAATGAGGCATA+AGG - chr5_1:35475633-35475652 Msa0729030:intron 35.0%
ATACACTTGCACTTTACACA+GGG + chr5_1:35475662-35475681 None:intergenic 35.0%
TATACACTTGCACTTTACAC+AGG + chr5_1:35475663-35475682 None:intergenic 35.0%
TGGCTATTAGGCTTCAATTT+CGG - chr5_1:35475913-35475932 Msa0729030:intron 35.0%
!! ATTGTGCAACACTGTTTTTC+TGG - chr5_1:35476027-35476046 Msa0729030:intron 35.0%
TTTAATCACAGCTCGATCAT+AGG + chr5_1:35476302-35476321 None:intergenic 35.0%
ATCGAGCTGTGATTAAATTC+AGG - chr5_1:35476305-35476324 Msa0729030:intron 35.0%
TCGAGCTGTGATTAAATTCA+GGG - chr5_1:35476306-35476325 Msa0729030:intron 35.0%
GACGAAGAATTTATCGAAAG+AGG - chr5_1:35476466-35476485 Msa0729030:intron 35.0%
! CAAAGCAATGTTTTCTCAAG+TGG - chr5_1:35476512-35476531 Msa0729030:intron 35.0%
CTTACCAACAAAATTCTGCA+CGG - chr5_1:35476657-35476676 Msa0729030:intron 35.0%
! TAAACCGTGCAGAATTTTGT+TGG + chr5_1:35476664-35476683 None:intergenic 35.0%
! CTGCACGGTTTAGTTTATAT+TGG - chr5_1:35476672-35476691 Msa0729030:intron 35.0%
TTAACACTCAAATATCCTGC+TGG - chr5_1:35476896-35476915 Msa0729030:intron 35.0%
!! TCCTTTGGCTTGAATTTCAT+AGG - chr5_1:35477028-35477047 Msa0729030:intron 35.0%
!! CCTTTGGCTTGAATTTCATA+GGG - chr5_1:35477029-35477048 Msa0729030:intron 35.0%
!!! TTTTGATTTTGCCACTGAAC+TGG + chr5_1:35477135-35477154 None:intergenic 35.0%
!! TGGTGGTTTGTATTCTGTTT+TGG - chr5_1:35477566-35477585 Msa0729030:intron 35.0%
!! TGGTTTGTATTCTGTTTTGG+TGG - chr5_1:35477569-35477588 Msa0729030:intron 35.0%
AGAAAGGAGGCAAAAACAAA+GGG + chr5_1:35477813-35477832 None:intergenic 35.0%
TAGAAAGGAGGCAAAAACAA+AGG + chr5_1:35477814-35477833 None:intergenic 35.0%
! TTTTCTTTCCTAGAGGATGA+TGG - chr5_1:35477838-35477857 Msa0729030:intron 35.0%
ATCAGGAAGTTGTTTAAGGA+TGG - chr5_1:35477959-35477978 Msa0729030:intron 35.0%
TTAGTTGTGCTGAGTATTCT+AGG - chr5_1:35478237-35478256 Msa0729030:intron 35.0%
TCCTTTCCATTTGATACAAG+GGG + chr5_1:35478513-35478532 None:intergenic 35.0%
GTCCTTTCCATTTGATACAA+GGG + chr5_1:35478514-35478533 None:intergenic 35.0%
TGTCCTTTCCATTTGATACA+AGG + chr5_1:35478515-35478534 None:intergenic 35.0%
!!! GTTTTTGTGATGGGTTTAGA+AGG + chr5_1:35478677-35478696 None:intergenic 35.0%
!! TTCTTTGGCTTTGGTTTGAT+GGG + chr5_1:35478710-35478729 None:intergenic 35.0%
!! TTTCTTTGGCTTTGGTTTGA+TGG + chr5_1:35478711-35478730 None:intergenic 35.0%
! TCTGAGGCGAGGTATAAATA+TGG - chr5_1:35470922-35470941 Msa0729030:three_prime_UTR 40.0%
! TATGTGATGGGAAGAGTGAT+CGG - chr5_1:35471001-35471020 Msa0729030:three_prime_UTR 40.0%
! TGATGTTGTTGTTAGTGCCT+TGG - chr5_1:35471194-35471213 Msa0729030:three_prime_UTR 40.0%
GGATGCTAAATGGACACTAA+CGG + chr5_1:35471421-35471440 None:intergenic 40.0%
GTCTTTACCCCCTGTAATAT+AGG - chr5_1:35471778-35471797 Msa0729030:CDS 40.0%
!!! TTTTTTACAGGGGGGAAAAC+CGG + chr5_1:35471810-35471829 None:intergenic 40.0%
TCTTTACCCCCCTGTAATTT+AGG - chr5_1:35472031-35472050 Msa0729030:intron 40.0%
TGGAACTCGCCTAAATTACA+GGG + chr5_1:35472043-35472062 None:intergenic 40.0%
AGAGAGAGATACAAAGACTG+GGG - chr5_1:35472455-35472474 Msa0729030:intron 40.0%
!!! TTTTGGGTTTTACCTGGGTT+AGG + chr5_1:35472491-35472510 None:intergenic 40.0%
AACCCAGGTAAAACCCAAAA+CGG - chr5_1:35472491-35472510 Msa0729030:intron 40.0%
TCGATGAACCTGAGTGTAAA+CGG - chr5_1:35472766-35472785 Msa0729030:intron 40.0%
!! AAAAGTGTCCGTTTACACTC+AGG + chr5_1:35472777-35472796 None:intergenic 40.0%
!!! CTTTTTTTACAGGGGGAAAC+CGG - chr5_1:35473603-35473622 Msa0729030:intron 40.0%
TGTAATATAGGCGAGAGTTC+CGG + chr5_1:35473625-35473644 None:intergenic 40.0%
GAACTCTCGCCTATATTACA+GGG - chr5_1:35473625-35473644 Msa0729030:intron 40.0%
AACTCTCGCCTATATTACAG+GGG - chr5_1:35473626-35473645 Msa0729030:intron 40.0%
! GAAATCGCGTTTGTGTGTTT+TGG + chr5_1:35473689-35473708 None:intergenic 40.0%
TGAAGTGATTCTGCGTTTCA+TGG + chr5_1:35473727-35473746 None:intergenic 40.0%
! CGCAAATTTGGAGCGATTAA+GGG + chr5_1:35473888-35473907 None:intergenic 40.0%
! TCGCAAATTTGGAGCGATTA+AGG + chr5_1:35473889-35473908 None:intergenic 40.0%
TCGAACAGAAAGTAGCTTGA+AGG + chr5_1:35473968-35473987 None:intergenic 40.0%
! TTGTTTGTGAATGGGTTTGG+TGG - chr5_1:35474462-35474481 Msa0729030:intron 40.0%
! TGTCCTGTTTTCTGTTTAGG+TGG - chr5_1:35474739-35474758 Msa0729030:intron 40.0%
TGTCCACCTAAACAGAAAAC+AGG + chr5_1:35474745-35474764 None:intergenic 40.0%
! TGTTTTCTGTTTAGGTGGAC+AGG - chr5_1:35474744-35474763 Msa0729030:intron 40.0%
GCGCCCAAAAAAAATCAACA+TGG + chr5_1:35474835-35474854 None:intergenic 40.0%
ATATTGAATCGATGTGGGAC+CGG - chr5_1:35474886-35474905 Msa0729030:intron 40.0%
CATCAATTGGCAGCAAAAGA+TGG + chr5_1:35475448-35475467 None:intergenic 40.0%
! CATCTTTTGCTGCCAATTGA+TGG - chr5_1:35475446-35475465 Msa0729030:intron 40.0%
ATCTTCGATCCATGTCTACA+AGG + chr5_1:35475514-35475533 None:intergenic 40.0%
TGCGGTAAATATTCATAGGC+TGG - chr5_1:35475544-35475563 Msa0729030:intron 40.0%
GCGGTAAATATTCATAGGCT+GGG - chr5_1:35475545-35475564 Msa0729030:intron 40.0%
! CATAGCCTTTTCTCCAAACT+CGG + chr5_1:35475600-35475619 None:intergenic 40.0%
AGACTTAGTGAATCCTAGAG+AGG - chr5_1:35475682-35475701 Msa0729030:intron 40.0%
GGCTATTAGGCTTCAATTTC+GGG - chr5_1:35475914-35475933 Msa0729030:intron 40.0%
TTCGGGAAGTTTATGAGTGT+TGG - chr5_1:35475931-35475950 Msa0729030:intron 40.0%
TCGGGAAGTTTATGAGTGTT+GGG - chr5_1:35475932-35475951 Msa0729030:intron 40.0%
GTTGGAAACCATTGATCTTG+AGG + chr5_1:35475966-35475985 None:intergenic 40.0%
GGTTTCCAACACTTTCAGTA+AGG - chr5_1:35475976-35475995 Msa0729030:intron 40.0%
TTGTATTGTTGGGCTTAGGA+GGG - chr5_1:35476118-35476137 Msa0729030:intron 40.0%
CGAGCTGTGATTAAATTCAG+GGG - chr5_1:35476307-35476326 Msa0729030:intron 40.0%
GTGATTAAATTCAGGGGAGT+TGG - chr5_1:35476313-35476332 Msa0729030:intron 40.0%
TTATATCACAGACCATTGCG+CGG + chr5_1:35476769-35476788 None:intergenic 40.0%
CCCTATGAAATTCAAGCCAA+AGG + chr5_1:35477032-35477051 None:intergenic 40.0%
TCAGTGGCAAAATCAAAAGC+AGG - chr5_1:35477137-35477156 Msa0729030:intron 40.0%
CGAATTTGTGCTTGCATCAT+TGG - chr5_1:35477187-35477206 Msa0729030:intron 40.0%
TTTGTGCTTGCATCATTGGA+TGG - chr5_1:35477191-35477210 Msa0729030:intron 40.0%
CATAAGTCCCCAAAATGACA+AGG + chr5_1:35477241-35477260 None:intergenic 40.0%
TAGTATTTAGCTACGTTGGG+TGG - chr5_1:35477432-35477451 Msa0729030:intron 40.0%
GAATGAAGCTTCTTGTCACT+TGG - chr5_1:35477528-35477547 Msa0729030:intron 40.0%
TCACTTGGATCAACAAGTGT+TGG - chr5_1:35477543-35477562 Msa0729030:intron 40.0%
TTTCGGTTGCAGTTCATTGT+AGG - chr5_1:35477642-35477661 Msa0729030:intron 40.0%
TAGAGTAGTTAGCTGGTTAG+AGG - chr5_1:35477703-35477722 Msa0729030:intron 40.0%
AGAGTAGTTAGCTGGTTAGA+GGG - chr5_1:35477704-35477723 Msa0729030:intron 40.0%
TCCATTCATAAGCACTTTGC+AGG + chr5_1:35477779-35477798 None:intergenic 40.0%
GATGTATCAGAGCTGAAACA+GGG + chr5_1:35477867-35477886 None:intergenic 40.0%
TGATGTATCAGAGCTGAAAC+AGG + chr5_1:35477868-35477887 None:intergenic 40.0%
TCTTTGTAGGCCAAAACATC+AGG - chr5_1:35477942-35477961 Msa0729030:intron 40.0%
TTAAGGATGGCTCCATTATC+AGG - chr5_1:35477972-35477991 Msa0729030:intron 40.0%
! CTTAGTTGGCTTCCTGATAA+TGG + chr5_1:35477987-35478006 None:intergenic 40.0%
! ATGAAGGAGTACAAGAGGAA+GGG - chr5_1:35478034-35478053 Msa0729030:intron 40.0%
! TCAACCCTATTTGAAGTGCA+TGG - chr5_1:35478350-35478369 Msa0729030:intron 40.0%
CACTCCATGCACTTCAAATA+GGG + chr5_1:35478357-35478376 None:intergenic 40.0%
TCCCCTTGTATCAAATGGAA+AGG - chr5_1:35478509-35478528 Msa0729030:intron 40.0%
! TGATCCCATGGTTTGATGAT+CGG + chr5_1:35478618-35478637 None:intergenic 40.0%
AGAAGAGAAACATGATCCCA+TGG + chr5_1:35478630-35478649 None:intergenic 40.0%
TCTAAACCGGTCAAATCATC+AGG - chr5_1:35478773-35478792 Msa0729030:CDS 40.0%
GGGATTGGATTGAAGGTGAT+CGG - chr5_1:35471043-35471062 Msa0729030:three_prime_UTR 45.0%
GGTGATCGGAGAAAATGAGA+AGG - chr5_1:35471057-35471076 Msa0729030:three_prime_UTR 45.0%
! TGTTGTTGTTAGTGCCTTGG+TGG - chr5_1:35471197-35471216 Msa0729030:three_prime_UTR 45.0%
! TGGTGGTGATAGTGAGTAGA+TGG - chr5_1:35471217-35471236 Msa0729030:three_prime_UTR 45.0%
GAACTCGCCTATATTACAGG+GGG + chr5_1:35471788-35471807 None:intergenic 45.0%
GGAACTCGCCTATATTACAG+GGG + chr5_1:35471789-35471808 None:intergenic 45.0%
CGGAACTCGCCTATATTACA+GGG + chr5_1:35471790-35471809 None:intergenic 45.0%
CCTGTAATATAGGCGAGTTC+CGG - chr5_1:35471788-35471807 Msa0729030:intron 45.0%
AACTCGCCTAAATTACAGGG+GGG + chr5_1:35472040-35472059 None:intergenic 45.0%
GAACTCGCCTAAATTACAGG+GGG + chr5_1:35472041-35472060 None:intergenic 45.0%
GGAACTCGCCTAAATTACAG+GGG + chr5_1:35472042-35472061 None:intergenic 45.0%
CTGGAACTCGCCTAAATTAC+AGG + chr5_1:35472044-35472063 None:intergenic 45.0%
GACATTGGAAGAGCAACTTG+AGG - chr5_1:35472346-35472365 Msa0729030:intron 45.0%
GAGAGAGATACAAAGACTGG+GGG - chr5_1:35472456-35472475 Msa0729030:intron 45.0%
AGAGAGATACAAAGACTGGG+GGG - chr5_1:35472457-35472476 Msa0729030:intron 45.0%
ACCCAGGTAAAACCCAAAAC+GGG - chr5_1:35472492-35472511 Msa0729030:intron 45.0%
! TTATGCTTGCTGCTTGAGCA+GGG + chr5_1:35472733-35472752 None:intergenic 45.0%
! TTTATGCTTGCTGCTTGAGC+AGG + chr5_1:35472734-35472753 None:intergenic 45.0%
GGAACTCTCGCCTATATTAC+AGG - chr5_1:35473624-35473643 Msa0729030:intron 45.0%
TCTGCGTTTCATGGTTTGAG+AGG + chr5_1:35473718-35473737 None:intergenic 45.0%
AAGTAGCTTGAAGGCAGCAA+CGG + chr5_1:35473959-35473978 None:intergenic 45.0%
ACAGCTACACAATCTGGTCA+TGG - chr5_1:35474691-35474710 Msa0729030:intron 45.0%
CAGCTACACAATCTGGTCAT+GGG - chr5_1:35474692-35474711 Msa0729030:intron 45.0%
AGCTACACAATCTGGTCATG+GGG - chr5_1:35474693-35474712 Msa0729030:intron 45.0%
! GGCTGTCCTGTTTTCTGTTT+AGG - chr5_1:35474736-35474755 Msa0729030:intron 45.0%
TGGGCGCTTACTACAATTCA+CGG - chr5_1:35474848-35474867 Msa0729030:intron 45.0%
TACTACAATTCACGGTAGCC+AGG - chr5_1:35474856-35474875 Msa0729030:intron 45.0%
ACTACAATTCACGGTAGCCA+GGG - chr5_1:35474857-35474876 Msa0729030:intron 45.0%
TGGGTTCTCTAACTTTGACG+CGG + chr5_1:35474918-35474937 None:intergenic 45.0%
GATCAAGGAGAGAATGACCT+GGG + chr5_1:35474937-35474956 None:intergenic 45.0%
TGATCAAGGAGAGAATGACC+TGG + chr5_1:35474938-35474957 None:intergenic 45.0%
GGCAGCAAAAGATGGCATAA+TGG + chr5_1:35475440-35475459 None:intergenic 45.0%
ATTGCCAAAGTAGCCGAGTT+TGG - chr5_1:35475584-35475603 Msa0729030:intron 45.0%
TTCTCCAAACTCGGCTACTT+TGG + chr5_1:35475591-35475610 None:intergenic 45.0%
AGTAGCCGAGTTTGGAGAAA+AGG - chr5_1:35475592-35475611 Msa0729030:intron 45.0%
CGAGTTTGGAGAAAAGGCTA+TGG - chr5_1:35475598-35475617 Msa0729030:intron 45.0%
CTTAGTGAATCCTAGAGAGG+AGG - chr5_1:35475685-35475704 Msa0729030:intron 45.0%
TCATCTTCATCCTCCTCTCT+AGG + chr5_1:35475698-35475717 None:intergenic 45.0%
TTTACATGTGAGCCCTGTTG+TGG - chr5_1:35476053-35476072 Msa0729030:intron 45.0%
ACATAAACCCAGCCACAACA+GGG + chr5_1:35476068-35476087 None:intergenic 45.0%
CCTAAGCCCAACAATACAAC+AGG + chr5_1:35476117-35476136 None:intergenic 45.0%
CCTGTTGTATTGTTGGGCTT+AGG - chr5_1:35476114-35476133 Msa0729030:intron 45.0%
GTTGTATTGTTGGGCTTAGG+AGG - chr5_1:35476117-35476136 Msa0729030:intron 45.0%
TCAAGTGGGAGTTCGAAGTA+CGG - chr5_1:35476527-35476546 Msa0729030:intron 45.0%
GGAGTAACACTGCACAAATG+TGG - chr5_1:35476551-35476570 Msa0729030:intron 45.0%
GCTCGAATGGGTCAATTCTT+TGG - chr5_1:35476584-35476603 Msa0729030:intron 45.0%
TTTAAATTGTGGCCGCGCAA+TGG - chr5_1:35476754-35476773 Msa0729030:intron 45.0%
!! ATGACAGAAAGTGCTGCCAA+TGG - chr5_1:35477069-35477088 Msa0729030:intron 45.0%
CGTTGGGTGGATCCATTTAA+AGG - chr5_1:35477445-35477464 Msa0729030:intron 45.0%
!! CTTGGATCAACAAGTGTTGG+TGG - chr5_1:35477546-35477565 Msa0729030:intron 45.0%
!!! GTATTCTGTTTTGGTGGCGT+TGG - chr5_1:35477575-35477594 Msa0729030:intron 45.0%
!!! GTTTTGGTGGCGTTGGAATT+CGG - chr5_1:35477582-35477601 Msa0729030:intron 45.0%
! GCCTGCAAAGTGCTTATGAA+TGG - chr5_1:35477775-35477794 Msa0729030:intron 45.0%
GAGAGGGAGTGAATCTTAGT+TGG + chr5_1:35478001-35478020 None:intergenic 45.0%
! CATGAAGGAGTACAAGAGGA+AGG - chr5_1:35478033-35478052 Msa0729030:intron 45.0%
AAGGGACGTCATTCTGGATA+TGG - chr5_1:35478052-35478071 Msa0729030:intron 45.0%
GCACTCCATGCACTTCAAAT+AGG + chr5_1:35478358-35478377 None:intergenic 45.0%
! CCATGGTTTGATGATCGGTT+GGG + chr5_1:35478613-35478632 None:intergenic 45.0%
CCAACCGATCATCAAACCAT+GGG - chr5_1:35478611-35478630 Msa0729030:intron 45.0%
GTGAAGCCTGATGATTTGAC+CGG + chr5_1:35478782-35478801 None:intergenic 45.0%
! TTCAGACGGAAGCATGACAA+TGG + chr5_1:35478804-35478823 None:intergenic 45.0%
ATTGTCATGCTTCCGTCTGA+AGG - chr5_1:35478803-35478822 Msa0729030:CDS 45.0%
!!! TTATTTTTAAAATTTTTACA+GGG + chr5_1:35472074-35472093 None:intergenic 5.0%
!!! TTTATTTTTAAAATTTTTAC+AGG + chr5_1:35472075-35472094 None:intergenic 5.0%
!! TAAAAATAAAAAATAAAATC+TGG - chr5_1:35472085-35472104 Msa0729030:intron 5.0%
!!! TTATTTTTTTAAAAAAATTC+TGG - chr5_1:35472124-35472143 Msa0729030:intron 5.0%
!!! TTTAGTTTAATTAAAAATTT+AGG + chr5_1:35472872-35472891 None:intergenic 5.0%
!!! TATTTAAAATTTTAAAAATC+TGG + chr5_1:35472971-35472990 None:intergenic 5.0%
!! ATAAATAAAAATTGAAATAA+TGG + chr5_1:35473110-35473129 None:intergenic 5.0%
!!! ATAATTTTTTAAAAAAAATC+TGG + chr5_1:35473137-35473156 None:intergenic 5.0%
!! AAAAATAATAATTTAAATTC+TGG + chr5_1:35473249-35473268 None:intergenic 5.0%
! AATGCAATGGATCTGAGGCG+AGG - chr5_1:35470911-35470930 Msa0729030:three_prime_UTR 50.0%
GTGATCGGCAAAGAACTCGA+CGG - chr5_1:35471016-35471035 Msa0729030:three_prime_UTR 50.0%
TGTTGTTAGTGCCTTGGTGG+TGG - chr5_1:35471200-35471219 Msa0729030:three_prime_UTR 50.0%
ACTCACTATCACCACCACCA+AGG + chr5_1:35471214-35471233 None:intergenic 50.0%
CCGGAACTCGCCTATATTAC+AGG + chr5_1:35471791-35471810 None:intergenic 50.0%
GGGGACATAAAACCTAACCC+AGG - chr5_1:35472476-35472495 Msa0729030:intron 50.0%
!!! GCCCGTTTTGGGTTTTACCT+GGG + chr5_1:35472496-35472515 None:intergenic 50.0%
!!! TGCCCGTTTTGGGTTTTACC+TGG + chr5_1:35472497-35472516 None:intergenic 50.0%
TAACATAGCAAACCCGCGTG+CGG - chr5_1:35472588-35472607 Msa0729030:CDS 50.0%
AGTCACCTATTCTGCTGACG+TGG + chr5_1:35473481-35473500 None:intergenic 50.0%
TCAGATGACGTGGCATGACA+TGG + chr5_1:35473511-35473530 None:intergenic 50.0%
TGTCATGCCACGTCATCTGA+TGG - chr5_1:35473511-35473530 Msa0729030:intron 50.0%
GTCATGCCACGTCATCTGAT+GGG - chr5_1:35473512-35473531 Msa0729030:intron 50.0%
TCATGCCACGTCATCTGATG+GGG - chr5_1:35473513-35473532 Msa0729030:intron 50.0%
GGGGTCTCAAATGTGCTCAA+GGG - chr5_1:35473534-35473553 Msa0729030:intron 50.0%
GGGTCTCAAATGTGCTCAAG+GGG - chr5_1:35473535-35473554 Msa0729030:intron 50.0%
GGTCTCAAATGTGCTCAAGG+GGG - chr5_1:35473536-35473555 Msa0729030:intron 50.0%
TTCGGCACAGCTACACAATC+TGG - chr5_1:35474685-35474704 Msa0729030:intron 50.0%
! GAGCAGCCTGTTATGGCTTT+TGG - chr5_1:35474766-35474785 Msa0729030:intron 50.0%
CTCTAACTTTGACGCGGGAA+AGG + chr5_1:35474912-35474931 None:intergenic 50.0%
GGGTTCTCTAACTTTGACGC+GGG + chr5_1:35474917-35474936 None:intergenic 50.0%
GCGTCAAAGTTAGAGAACCC+AGG - chr5_1:35474917-35474936 Msa0729030:intron 50.0%
CACATAAACCCAGCCACAAC+AGG + chr5_1:35476069-35476088 None:intergenic 50.0%
CTGTTGTGGCTGGGTTTATG+TGG - chr5_1:35476067-35476086 Msa0729030:intron 50.0%
ACTGCACAAATGTGGCCGTT+GGG - chr5_1:35476559-35476578 Msa0729030:intron 50.0%
!! ACAGAAAGTGCTGCCAATGG+CGG - chr5_1:35477072-35477091 Msa0729030:intron 50.0%
GGTTCTCACTGGAGTTGTGA+AGG - chr5_1:35477094-35477113 Msa0729030:intron 50.0%
ACTGGAGTTGTGAAGGTCTC+TGG - chr5_1:35477101-35477120 Msa0729030:intron 50.0%
CTGGAGTTGTGAAGGTCTCT+GGG - chr5_1:35477102-35477121 Msa0729030:intron 50.0%
! TGGGCTTTTCACCAGTTCAG+TGG - chr5_1:35477121-35477140 Msa0729030:intron 50.0%
GATGCAAGCACAAATTCGCC+AGG + chr5_1:35477185-35477204 None:intergenic 50.0%
!! GGATCAACAAGTGTTGGTGG+TGG - chr5_1:35477549-35477568 Msa0729030:intron 50.0%
CAGGGTAACCATCATCCTCT+AGG + chr5_1:35477849-35477868 None:intergenic 50.0%
!! GGTTTGGTGGCTCTCTTTGT+AGG - chr5_1:35477929-35477948 Msa0729030:intron 50.0%
AAGAGGAAGGGACGTCATTC+TGG - chr5_1:35478046-35478065 Msa0729030:intron 50.0%
CCCAACCGATCATCAAACCA+TGG - chr5_1:35478610-35478629 Msa0729030:intron 50.0%
! CCCATGGTTTGATGATCGGT+TGG + chr5_1:35478614-35478633 None:intergenic 50.0%
ATGCTTCCGTCTGAAGGTGA+AGG - chr5_1:35478809-35478828 Msa0729030:CDS 50.0%
CAACCACCTTCACCTTCAGA+CGG + chr5_1:35478818-35478837 None:intergenic 50.0%
ATCGGCAAAGAACTCGACGG+CGG - chr5_1:35471019-35471038 Msa0729030:three_prime_UTR 55.0%
GGTCTCAAATGTGCTCAGGG+GGG + chr5_1:35471878-35471897 None:intergenic 55.0%
GGGTCTCAAATGTGCTCAGG+GGG + chr5_1:35471879-35471898 None:intergenic 55.0%
GGGGTCTCAAATGTGCTCAG+GGG + chr5_1:35471880-35471899 None:intergenic 55.0%
GGGGGTCTCAAATGTGCTCA+GGG + chr5_1:35473533-35473552 None:intergenic 55.0%
CAAGCCACGTCAGCAGACAA+GGG + chr5_1:35471941-35471960 None:intergenic 55.0%
AACATAGCAAACCCGCGTGC+GGG - chr5_1:35472589-35472608 Msa0729030:CDS 55.0%
GCAGGGAGTTGTTGGCACTT+GGG + chr5_1:35472716-35472735 None:intergenic 55.0%
AGCAGGGAGTTGTTGGCACT+TGG + chr5_1:35472717-35472736 None:intergenic 55.0%
CTGCTTGAGCAGGGAGTTGT+TGG + chr5_1:35472724-35472743 None:intergenic 55.0%
CATGCCACGTCATCTGATGG+GGG - chr5_1:35473514-35473533 Msa0729030:intron 55.0%
ATGCCACGTCATCTGATGGG+GGG - chr5_1:35473515-35473534 Msa0729030:intron 55.0%
GGGGGTCTCAAATGTGCTCA+AGG - chr5_1:35473533-35473552 Msa0729030:intron 55.0%
! GTGCTCAAGGGGGTTTTCGA+CGG - chr5_1:35473546-35473565 Msa0729030:intron 55.0%
TGGACAGGAGCAGCCTGTTA+TGG - chr5_1:35474759-35474778 Msa0729030:intron 55.0%
AACTTTGACGCGGGAAAGGC+CGG + chr5_1:35474908-35474927 None:intergenic 55.0%
ATGTGAGCCCTGTTGTGGCT+GGG - chr5_1:35476058-35476077 Msa0729030:intron 55.0%
AGTGGGAGTTCGAAGTACGG+AGG - chr5_1:35476530-35476549 Msa0729030:intron 55.0%
CACTGCACAAATGTGGCCGT+TGG - chr5_1:35476558-35476577 Msa0729030:intron 55.0%
GACCCATTCGAGCTTCCCAA+CGG + chr5_1:35476577-35476596 None:intergenic 55.0%
TCAGATAGACGCAGACCAGC+AGG + chr5_1:35476914-35476933 None:intergenic 55.0%
!! CAGAAAGTGCTGCCAATGGC+GGG - chr5_1:35477073-35477092 Msa0729030:intron 55.0%
ACTCCTTCATGCGCCTAGCA+CGG + chr5_1:35478024-35478043 None:intergenic 55.0%
! GGCGCATGAAGGAGTACAAG+AGG - chr5_1:35478029-35478048 Msa0729030:intron 55.0%
CTTCCGTCTGAAGGTGAAGG+TGG - chr5_1:35478812-35478831 Msa0729030:CDS 55.0%
GCAAAGAACTCGACGGCGGT+GGG - chr5_1:35471023-35471042 Msa0729030:three_prime_UTR 60.0%
CGGCGGTGGGATTGGATTGA+AGG - chr5_1:35471036-35471055 Msa0729030:three_prime_UTR 60.0%
! GTGCTCAGGGGGGTTTTCGA+CGG + chr5_1:35471868-35471887 None:intergenic 60.0%
GGGGGGTCTCAAATGTGCTC+AGG + chr5_1:35473532-35473551 None:intergenic 60.0%
TCACGCCACGTCATCAGCTG+GGG + chr5_1:35471901-35471920 None:intergenic 60.0%
GTCACGCCACGTCATCAGCT+GGG + chr5_1:35471902-35471921 None:intergenic 60.0%
GTCACCCTTGTCTGCTGACG+TGG - chr5_1:35471934-35471953 Msa0729030:intron 60.0%
GCAAGCCACGTCAGCAGACA+AGG + chr5_1:35471942-35471961 None:intergenic 60.0%
ACATAGCAAACCCGCGTGCG+GGG - chr5_1:35472590-35472609 Msa0729030:CDS 60.0%
GCGTGCCACGTCAGCAGAAT+AGG - chr5_1:35473473-35473492 Msa0729030:intron 60.0%
AGACCCCCCATCAGATGACG+TGG + chr5_1:35473521-35473540 None:intergenic 60.0%
CATGTGAGCCCTGTTGTGGC+TGG - chr5_1:35476057-35476076 Msa0729030:intron 60.0%
TGGCCGTTGGGAAGCTCGAA+TGG - chr5_1:35476571-35476590 Msa0729030:intron 60.0%
GGCCGTTGGGAAGCTCGAAT+GGG - chr5_1:35476572-35476591 Msa0729030:intron 60.0%
!! TGCCAATGGCGGGTTCTCAC+TGG - chr5_1:35477083-35477102 Msa0729030:intron 60.0%
CTCCAGTGAGAACCCGCCAT+TGG + chr5_1:35477088-35477107 None:intergenic 60.0%
TTCACTCCCTCTCCCGTGCT+AGG - chr5_1:35478008-35478027 Msa0729030:intron 60.0%
CTCCTTCATGCGCCTAGCAC+GGG + chr5_1:35478023-35478042 None:intergenic 60.0%
GGCAAAGAACTCGACGGCGG+TGG - chr5_1:35471022-35471041 Msa0729030:three_prime_UTR 65.0%
GAACTCGACGGCGGTGGGAT+TGG - chr5_1:35471028-35471047 Msa0729030:three_prime_UTR 65.0%
! AGACCCCCCAGCTGATGACG+TGG - chr5_1:35471893-35471912 Msa0729030:intron 65.0%
ACGCCACGTCATCAGCTGGG+GGG + chr5_1:35471899-35471918 None:intergenic 65.0%
CACGCCACGTCATCAGCTGG+GGG + chr5_1:35471900-35471919 None:intergenic 65.0%
CGTCACGCCACGTCATCAGC+TGG + chr5_1:35471903-35471922 None:intergenic 65.0%
! GCTGATGACGTGGCGTGACG+TGG - chr5_1:35471903-35471922 Msa0729030:intron 65.0%
! TCTGGTTTCGTCCCCGCACG+CGG + chr5_1:35472604-35472623 None:intergenic 65.0%
CATGCGCCTAGCACGGGAGA+GGG + chr5_1:35478017-35478036 None:intergenic 65.0%
TCATGCGCCTAGCACGGGAG+AGG + chr5_1:35478018-35478037 None:intergenic 65.0%
CTCCCGTGCTAGGCGCATGA+AGG - chr5_1:35478018-35478037 Msa0729030:intron 65.0%
CTGGTTTCGTCCCCGCACGC+GGG + chr5_1:35472603-35472622 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 35470908 35478840 35470908 ID=Msa0729030;Name=Msa0729030
chr5_1 mRNA 35470908 35478840 35470908 ID=Msa0729030-mRNA-1;Parent=Msa0729030;Name=Msa0729030-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0.25|0.44|0.77|0.87|1|9|759|295
chr5_1 exon 35470908 35471797 35470908 ID=Msa0729030-mRNA-1:exon:10969;Parent=Msa0729030-mRNA-1
chr5_1 exon 35472530 35472672 35472530 ID=Msa0729030-mRNA-1:exon:10968;Parent=Msa0729030-mRNA-1
chr5_1 exon 35472747 35472772 35472747 ID=Msa0729030-mRNA-1:exon:10967;Parent=Msa0729030-mRNA-1
chr5_1 exon 35473135 35473281 35473135 ID=Msa0729030-mRNA-1:exon:10966;Parent=Msa0729030-mRNA-1
chr5_1 exon 35473364 35473451 35473364 ID=Msa0729030-mRNA-1:exon:10965;Parent=Msa0729030-mRNA-1
chr5_1 exon 35473578 35473612 35473578 ID=Msa0729030-mRNA-1:exon:10964;Parent=Msa0729030-mRNA-1
chr5_1 exon 35473756 35473873 35473756 ID=Msa0729030-mRNA-1:exon:10963;Parent=Msa0729030-mRNA-1
chr5_1 exon 35474201 35474229 35474201 ID=Msa0729030-mRNA-1:exon:10962;Parent=Msa0729030-mRNA-1
chr5_1 exon 35478670 35478840 35478670 ID=Msa0729030-mRNA-1:exon:10961;Parent=Msa0729030-mRNA-1
chr5_1 CDS 35478670 35478840 35478670 ID=Msa0729030-mRNA-1:cds;Parent=Msa0729030-mRNA-1
chr5_1 CDS 35474201 35474229 35474201 ID=Msa0729030-mRNA-1:cds;Parent=Msa0729030-mRNA-1
chr5_1 CDS 35473756 35473873 35473756 ID=Msa0729030-mRNA-1:cds;Parent=Msa0729030-mRNA-1
chr5_1 CDS 35473578 35473612 35473578 ID=Msa0729030-mRNA-1:cds;Parent=Msa0729030-mRNA-1
chr5_1 CDS 35473364 35473451 35473364 ID=Msa0729030-mRNA-1:cds;Parent=Msa0729030-mRNA-1
chr5_1 CDS 35473135 35473281 35473135 ID=Msa0729030-mRNA-1:cds;Parent=Msa0729030-mRNA-1
chr5_1 CDS 35472747 35472772 35472747 ID=Msa0729030-mRNA-1:cds;Parent=Msa0729030-mRNA-1
chr5_1 CDS 35472530 35472672 35472530 ID=Msa0729030-mRNA-1:cds;Parent=Msa0729030-mRNA-1
chr5_1 CDS 35471667 35471797 35471667 ID=Msa0729030-mRNA-1:cds;Parent=Msa0729030-mRNA-1
chr5_1 three_prime_UTR 35470908 35471666 35470908 ID=Msa0729030-mRNA-1:three_prime_utr;Parent=Msa0729030-mRNA-1
Gene Sequence

>Msa0729030

ATGAATGCAATGGATCTGAGGCGAGGTATAAATATGGATGTTGATGCTGTTGTGACAAACTTGAAAAGCAGAGCACGAATGATTGACACTTCTTATGTGATGGGAAGAGTGATCGGCAAAGAACTCGACGGCGGTGGGATTGGATTGAAGGTGATCGGAGAAAATGAGAAGACATGGATCGAAGATGTATGTATGATGCGATTTACTGCTAGCAAAGATGCTGCTCATGCAATGAGGTTGGCTATTAGGCTTCAATTTCGGGAAGTTTATGAGTGTTGGGAAAATGTTCCTCAAGATCAATGGTTTCCAACACTTTCAGAGGGTGCAGCAGATTTTTGTTACTGTTTGCCCATAGCCTATGATCGAGCTGTGATTAAATTCAGGGGAGTTGGTGCTGACATAAATTTCAATTTGACTGATTATGATGATGATCTTAAACAGACGAAGAATTTATCGAAAGAGGAGTTTGTGCAAACACTTCGTCTACAAAGCAATGTTTTCTCAAGTGGGAGTTCGAAGTACGGAGGAGTAACACTGCACAAATGTGGCCGTTGGGAAGCTCGAATGGGTCAATTCTTTGGTAAAAAAGCAGCTACAAGTATTTGTACTTTCCTAAAGTGCTGCCAATGGCGGGTTCTCACTGGAGTTGTGAAGGTCTCTGGGCTTTTCACCAGTTCAGTGGCAAAATCAAAAGCAGGAAAGAAAATTTTCAAGCTTCTACCTGGCGAATTTGTGCTTGCATCATTGGATGGATTCAGCCAAAACATCAGGAAGTTGTTTAAGGATGGCTCCATTATCAGGAAGCCAACTAAGATTCACTCCCTCTCCCGTGCTAGGCGCATGAAGGAGTACAAGAGGAAGGGACGTCATTCTGGATATGGTATTTAA
Protein sequence

>Msa0729030

MNAMDLRRGINMDVDAVVTNLKSRARMIDTSYVMGRVIGKELDGGGIGLKVIGENEKTWIEDVCMMRFTASKDAAHAMRLAIRLQFREVYECWENVPQDQWFPTLSEGAADFCYCLPIAYDRAVIKFRGVGADINFNLTDYDDDLKQTKNLSKEEFVQTLRLQSNVFSSGSSKYGGVTLHKCGRWEARMGQFFGKKAATSICTFLKCCQWRVLTGVVKVSGLFTSSVAKSKAGKKIFKLLPGEFVLASLDGFSQNIRKLFKDGSIIRKPTKIHSLSRARRMKEYKRKGRHSGYGI*